+D Transcription factors KO #

  Transcription Factors - Burkholderia humptydooensis MSMB43

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D AQ610_02765 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D AQ610_29305 DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Stork head/winged helix factors C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG TOX C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D AQ610_00745 AraC family transcriptional regulator K04033 eutR; AraC family transcriptional regulator, ethanolamine operon transcriptional activator D AQ610_20630 AraC family transcriptional regulator K05372 ybtA; AraC family transcriptional regulator D AQ610_09575 hypothetical protein K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA D AQ610_04245 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D AQ610_24675 AraC family transcriptional regulator K07506 K07506; AraC family transcriptional regulator D AQ610_00725 XRE family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AQ610_18155 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D AQ610_27450 transcriptional regulator K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D AQ610_30800 short-chain dehydrogenase K13633 ftrA; AraC family transcriptional regulator, transcriptional activator FtrA D AQ610_27825 AraC family transcriptional regulator K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D AQ610_06320 AraC family transcriptional regulator K21825 argR; AraC family transcriptional regulator, L-arginine-responsive activator D AQ610_23650 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D AQ610_27915 AraC family transcriptional regulator K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D AQ610_11425 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_16635 XRE family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_16975 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_17255 transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_19325 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_20270 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_20880 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_25940 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_26390 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D AQ610_24270 LysR family transcriptional regulator K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D AQ610_05190 LysR family transcriptional regulator K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D AQ610_30595 LysR family transcriptional regulator K03717 nhaR; LysR family transcriptional regulator, transcriptional activator of nhaA D AQ610_03575 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D AQ610_19655 LysR family transcriptional regulator K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D AQ610_20835 chromosome replication initiation inhibitor protein K05596 argP; LysR family transcriptional regulator, arginine and lysine transport system/DNA replication regulator D AQ610_03170 transcriptional regulator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D AQ610_14360 transcriptional regulator K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D AQ610_10275 transcriptional regulator K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D AQ610_20095 LysR family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D AQ610_19555 LysR family transcriptional regulator K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D AQ610_11990 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D AQ610_15355 transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D AQ610_21080 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D AQ610_11345 LysR family transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D AQ610_03290 LysR family transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D AQ610_26970 LysR family transcriptional regulator K21699 bauR; LysR family transcriptional regulator, transcriptional activator for bauABCD operon D AQ610_29910 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes D AQ610_29975 LysR family transcriptional regulator K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes C DeoR family D AQ610_15505 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D AQ610_23420 AraC family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D AQ610_09260 AraC family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AQ610_10255 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AQ610_27925 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D AQ610_08890 LacI family transcriptional regulator K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor D AQ610_23475 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor C GntR family D AQ610_03610 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D AQ610_06565 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D AQ610_19185 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D AQ610_14650 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D AQ610_16300 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D AQ610_22040 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AQ610_24075 GntR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator D AQ610_12030 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AQ610_21050 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AQ610_21960 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AQ610_24805 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AQ610_27075 DNA-binding protein K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D AQ610_28140 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D AQ610_23940 transcriptional repressor BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D AQ610_15050 TetR family transcriptional regulator K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D AQ610_17855 dihydroorotate oxidase K05501 slmA; TetR/AcrR family transcriptional regulator D AQ610_21020 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D AQ610_07110 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AQ610_07155 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AQ610_07600 transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AQ610_27115 TetR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D AQ610_10120 TetR family transcriptional regulator K18129 mexZ; TetR/AcrR family transcriptional regulator, mexXY operon repressor D AQ610_30690 TetR family transcriptional regulator K22108 kstR2; TetR/AcrR family transcriptional regulator, cholesterol catabolism regulator C Lrp/AsnC family D AQ610_12530 AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D AQ610_00455 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_01200 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_01370 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_05680 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_12025 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_14865 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_17025 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_22095 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_22955 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_26100 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_26680 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D AQ610_12240 transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D AQ610_16965 AsnC family transcriptional regulator K26601 azlB; Lrp/AsnC family transcriptional regulator, repressor for azl operon C LuxR family D AQ610_26230 LuxR family transcriptional regulator K19666 solR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR D AQ610_22935 LuxR family transcriptional regulator K19731 cciR; LuxR family transcriptional regulator, quorum-sensing system regulator CciR D AQ610_21770 LuxR family transcriptional regulator K20330 toxJ; LuxR family transcriptional regulator, activator of tox operons C MarR family D AQ610_29370 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D AQ610_21380 MerR family transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator C Fur family D AQ610_03195 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D AQ610_14990 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator C IclR family D AQ610_21025 IclR family transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D AQ610_24810 4-hydroxyphenylpyruvate dioxygenase K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D AQ610_12790 IclR family transcriptional regulator K20329 qsmR; IclR family transcriptional regulator, positive regulator for flagellar biogenesis C CRP/FNR family D AQ610_14690 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D AQ610_19660 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D AQ610_24830 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D AQ610_30040 Crp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D AQ610_06450 Crp/Fnr family transcriptional regulator K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D AQ610_06835 Rrf2 family transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D AQ610_06400 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D AQ610_08285 Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D AQ610_16320 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D AQ610_24010 ArsR family transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family D AQ610_00130 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator C Other families D AQ610_03250 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D AQ610_16700 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D AQ610_03420 Fis family transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D AQ610_20670 propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D AQ610_22855 gluconate transporter K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D AQ610_08325 Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AQ610_27735 Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D AQ610_19990 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator D AQ610_29410 molybdenum-dependent transcriptional regulator K02019 modE; molybdate transport system regulatory protein D AQ610_08815 Cro/Cl family transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D AQ610_00625 putA; transcriptional regulator K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D AQ610_07965 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D AQ610_00550 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AQ610_18380 nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AQ610_18965 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AQ610_31695 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D AQ610_03740 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor D AQ610_00115 PaaX family transcriptional regulator K02616 paaX; phenylacetic acid degradation operon negative regulatory protein D AQ610_26265 transcription elongation factor GreAB K06140 rnk; regulator of nucleoside diphosphate kinase D AQ610_04430 uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D AQ610_12035 transcriptional regulator K07734 paiB; transcriptional regulator D AQ610_04420 hypothetical protein K07735 algH; putative transcriptional regulator D AQ610_17815 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D AQ610_31325 conjugal transfer protein TraR K06204 dksA; RNA polymerase-binding transcription factor D AQ610_04115 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR D AQ610_02595 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025 #
Classification taken and modified from TRANSFAC 7.0