+F Repair protein KO #

  DNA Repair and Recombination Proteins - Burkholderia sp. CCGE1001

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BC1001_2862 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BC1001_4542 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BC1001_4938 DNA photolyase FAD-binding protein protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BC1001_3140 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BC1001_5682 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BC1001_0305 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BC1001_0946 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E BC1001_3728 helicase c2 K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BC1001_3097 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BC1001_5373 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BC1001_2809 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BC1001_2862 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BC1001_4542 methylated-DNA/protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BC1001_3580 Ada DNA repair protein and transcriptional regulator, AraC family K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BC1001_4938 DNA photolyase FAD-binding protein protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E BC1001_3140 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BC1001_6000 Uracil-DNA glycosylase superfamily K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E BC1001_1445 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BC1001_2190 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BC1001_3617 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BC1001_5208 Uracil-DNA glycosylase superfamily K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E BC1001_2223 HhH-GPD family protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BC1001_3579 Methylated-DNA--(protein)-cysteine S-methyltransferase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BC1001_5682 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BC1001_0305 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BC1001_3427 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E BC1001_0304 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BC1001_0946 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BC1001_0072 exodeoxyribonuclease III Xth K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E BC1001_2316 exodeoxyribonuclease III Xth K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] E BC1001_5215 exodeoxyribonuclease III Xth K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E BC1001_2282 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BC1001_2170 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BC1001_4947 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BC1001_0325 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E BC1001_1234 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E BC1001_1138 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E BC1001_2526 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E BC1001_2445 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BC1001_2576 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BC1001_4947 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BC1001_2170 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BC1001_3289 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BC1001_3288 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BC1001_3255 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BC1001_2710 DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BC1001_1720 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BC1001_2233 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E BC1001_0464 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BC1001_2844 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BC1001_4952 exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BC1001_0965 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BC1001_0002 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BC1001_0745 DNA polymerase III chi subunit HolC K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E BC1001_3021 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BC1001_1674 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BC1001_2512 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BC1001_2703 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E BC1001_1809 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BC1001_2170 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BC1001_2445 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BC1001_2576 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BC1001_0327 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E BC1001_1993 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein E BC1001_0890 DNA mismatch endonuclease Vsr K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BC1001_1364 exodeoxyribonuclease V, beta subunit K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] E BC1001_1363 exodeoxyribonuclease V, gamma subunit K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] E BC1001_1365 exodeoxyribonuclease V, alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BC1001_2943 recA protein K03553 recA; recombination protein RecA E BC1001_2989 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BC1001_2990 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BC1001_2988 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E BC1001_3515 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BC1001_1851 putative primosomal replication protein N, PriB K02686 priB; primosomal replication protein N D RecFOR pathway proteins E BC1001_2943 recA protein K03553 recA; recombination protein RecA E BC1001_2185 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E BC1001_0422 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BC1001_3450 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BC1001_2282 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BC1001_2534 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E BC1001_1807 recombination protein RecR K06187 recR; recombination protein RecR E BC1001_0444 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E BC1001_0975 exonuclease RdgC K03554 rdgC; recombination associated protein RdgC E BC1001_2989 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BC1001_2990 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BC1001_2988 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BC1001_1736 Ku protein K10979 ku; DNA end-binding protein Ku E BC1001_1735 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E BC1001_1764 DNA ligase D K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BC1001_2639 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BC1001_0003 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BC1001_3744 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BC1001_1702 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F BC1001_1991 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F BC1001_3558 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F BC1001_4048 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BC1001_2282 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BC1001_2534 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F BC1001_1807 recombination protein RecR K06187 recR; recombination protein RecR F BC1001_2170 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F BC1001_2985 transcriptional regulator, Fis family K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F BC1001_2407 integration host factor, alpha subunit K04764 ihfA; integration host factor subunit alpha F BC1001_2630 integration host factor, beta subunit K05788 ihfB; integration host factor subunit beta E Supressor F BC1001_3287 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BC1001_5354 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BC1001_0325 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F BC1001_1234 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F BC1001_1138 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B F BC1001_0126 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F BC1001_3422 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F BC1001_3876 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F BC1001_4825 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F BC1001_5047 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F BC1001_5931 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS F BC1001_6007 histone family protein nucleoid-structuring protein H-NS K03746 hns; DNA-binding protein H-NS B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BC1001_5306 DNA-directed DNA polymerase K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D BC1001_2943 recA protein K03553 recA; recombination protein RecA D BC1001_1866 transcriptional repressor, LexA family K01356 lexA; repressor LexA [EC:3.4.21.88] D BC1001_0444 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BC1001_4066 DNA polymerase B exonuclease K02336 polB; DNA polymerase II [EC:2.7.7.7] D BC1001_1124 hypothetical protein K14160 imuA; protein ImuA D BC1001_5933 hypothetical protein K14160 imuA; protein ImuA D BC1001_1125 UMUC domain protein DNA-repair protein K14161 imuB; protein ImuB D BC1001_1126 DNA polymerase III, alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BC1001_0327 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D BC1001_1993 single-strand binding protein/Primosomal replication protein n K03111 ssb; single-strand DNA-binding protein D BC1001_2942 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D BC1001_3493 UvrD/REP helicase K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D BC1001_2237 helicase c2 K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BC1001_3753 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D BC1001_4186 DEAD/H associated domain protein K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D BC1001_3097 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BC1001_5373 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BC1001_2809 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BC1001_3075 ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BC1001_5658 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BC1001_3074 Ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 29, 2025