+F Repair protein KO
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DNA Repair and Recombination Proteins - Beta vulgaris (sugar beet)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 104900793 LOC104900793; DNA oxidative demethylase ALKBH2 isoform X1 K10859 ALKBH2; DNA oxidative demethylase [EC:1.14.11.33]
D 104907877 LOC104907877; DExH-box ATP-dependent RNA helicase DExH14 K18663 ASCC3; activating signal cointegrator complex subunit 3 [EC:5.6.2.4]
D 104892426 LOC104892426; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 104902628 LOC104902628; uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 104889174 LOC104889174; DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 104894489 LOC104894489; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 104884768 LOC104884768; uncharacterized protein LOC104884768 K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E 104906652 LOC104906652; N-glycosylase/DNA lyase OGG1 isoform X1 K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E 104888774 LOC104888774; endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 104894208 LOC104894208; putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
F 104890594 LOC104890594; DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
F 104889194 LOC104889194; DNA polymerase delta small subunit isoform X1 K02328 POLD2; DNA polymerase delta subunit 2
F 104891331 LOC104891331; uncharacterized protein LOC104891331 K03504 POLD3; DNA polymerase delta subunit 3
F 104890137 LOC104890137; uncharacterized protein LOC104890137 K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F 104900347 LOC104900347; DNA polymerase epsilon catalytic subunit A isoform X1 K02324 POLE; DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
F 104888021 LOC104888021; DNA polymerase epsilon subunit B K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F 104900308 LOC104900308; DNA polymerase II subunit B4 K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
E 104894393 LOC104894393; proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 104900019 LOC104900019; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 104903846 LOC104903846; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 104895393 LOC104895393; flap endonuclease 1 K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E 104902910 LOC104902910; DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
E 104904648 LOC104904648; DNA-repair protein XRCC1 K10803 XRCC1; DNA-repair protein XRCC1
D Other BER factors
E 104882954 LOC104882954; tyrosyl-DNA phosphodiesterase 1 isoform X1 K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E 104892527 LOC104892527; transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 104891387 LOC104891387; polynucleotide 3'-phosphatase ZDP isoform X1 K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E 104900512 LOC104900512; DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
E 104894635 LOC104894635; poly [ADP-ribose] polymerase 1 isoform X1 K24070 PARP1; poly [ADP-ribose] polymerase 1 [EC:2.4.2.30]
E 104898929 LOC104898929; poly [ADP-ribose] polymerase 2-A isoform X1 K28005 PARP2; poly [ADP-ribose] polymerase 2 [EC:2.4.2.30]
E 104900329 LOC104900329; protein ADP-ribosyltransferase PARP3 K10798 PARP3_4; protein mono-ADP-ribosyltransferase 3/4 [EC:2.4.2.-]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F 104895439 LOC104895439; DNA repair protein RAD4 isoform X1 K10838 XPC; xeroderma pigmentosum group C-complementing protein
F 104896513 LOC104896513; ubiquitin receptor RAD23c isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 104905940 LOC104905940; ubiquitin receptor RAD23d isoform X1 K10839 RAD23; UV excision repair protein RAD23
F 104907981 LOC104907981; probable ubiquitin receptor RAD23a isoform X1 K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F 104883468 LOC104883468; RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104899743 LOC104899743; RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104883798 LOC104883798; cullin-4 K10609 CUL4; cullin 4
F 104883320 LOC104883320; LOW QUALITY PROTEIN: DNA damage-binding protein 1-like K10610 DDB1; DNA damage-binding protein 1
F 104901181 LOC104901181; DNA damage-binding protein 1 isoform X1 K10610 DDB1; DNA damage-binding protein 1
F 104902748 LOC104902748; protein DAMAGED DNA-BINDING 2 K10140 DDB2; DNA damage-binding protein 2
E NER4 complex
F 104883458 LOC104883458; uncharacterized protein LOC104883458 isoform X1 K15082 RAD7; DNA repair protein RAD7
F 104903338 LOC104903338; DNA repair protein RAD16 isoform X1 K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F 104897786 LOC104897786; DNA-directed RNA polymerase II subunit RPB1 K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F 104900705 LOC104900705; DNA-directed RNA polymerase II subunit RPB2 K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F 104904974 LOC104904974; DNA-directed RNA polymerases II, IV and V subunit 3 K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F 104899323 LOC104899323; DNA-directed RNA polymerase II subunit 4 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 104902640 LOC104902640; DNA-directed RNA polymerases IV and V subunit 4 isoform X1 K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F 104887552 LOC104887552; DNA-directed RNA polymerase V subunit 5C K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 104889472 LOC104889472; DNA-directed RNA polymerase V subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 104899275 LOC104899275; DNA-directed RNA polymerases II and IV subunit 5A K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 104904036 LOC104904036; DNA-directed RNA polymerases II and IV subunit 5A isoform X1 K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F 104905507 LOC104905507; DNA-directed RNA polymerases II, IV and V subunit 6A K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F 104900045 LOC104900045; DNA-directed RNA polymerase II subunit RPB7 K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F 104889864 LOC104889864; DNA-directed RNA polymerases II, IV and V subunit 8B K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F 104888412 LOC104888412; DNA-directed RNA polymerases II, IV and V subunit 9A K03017 RPB9; DNA-directed RNA polymerase II subunit RPB9
F 104908813 LOC104908813; DNA-directed RNA polymerases I, II, and III subunit RPABC5 K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F 104889793 LOC104889793; DNA-directed RNA polymerases II, IV and V subunit 11 K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F 104893387 LOC104893387; DNA-directed RNA polymerases II, IV and V subunit 12 K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F 104883468 LOC104883468; RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104899743 LOC104899743; RING-box protein 1a K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F 104883798 LOC104883798; cullin-4 K10609 CUL4; cullin 4
F 104883320 LOC104883320; LOW QUALITY PROTEIN: DNA damage-binding protein 1-like K10610 DDB1; DNA damage-binding protein 1
F 104901181 LOC104901181; DNA damage-binding protein 1 isoform X1 K10610 DDB1; DNA damage-binding protein 1
F 104902089 LOC104902089; WD repeat-containing protein ATCSA-1 isoform X1 K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F 104894721 LOC104894721; protein CHROMATIN REMODELING 8 K10841 ERCC6; DNA excision repair protein ERCC-6
F 104883064 LOC104883064; UV-stimulated scaffold protein A homolog K23720 UVSSA; UV-stimulated scaffold protein A
F 104900611 LOC104900611; transcription elongation factor 1 homolog K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E 104892522 LOC104892522; general transcription and DNA repair factor IIH helicase subunit XPB1 isoform X1 K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E 104897080 LOC104897080; general transcription and DNA repair factor IIH helicase subunit XPD K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E 104902675 LOC104902675; general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1 K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E 104884127 LOC104884127; general transcription factor IIH subunit 2 isoform X1 K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E 104891113 LOC104891113; general transcription and DNA repair factor IIH subunit TFB4 isoform X1 K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E 104900717 LOC104900717; general transcription and DNA repair factor IIH subunit TFB2 K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E 104891402 LOC104891402; general transcription and DNA repair factor IIH subunit TFB5-like K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 104898151 LOC104898151; general transcription and DNA repair factor IIH subunit TFB5 K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E 104893694 LOC104893694; cyclin-dependent kinase D-1 K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E 104890810 LOC104890810; cyclin-H1-1 isoform X1 K06634 CCNH; cyclin H
E 104901737 LOC104901737; uncharacterized protein LOC104901737 K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E 104884669 LOC104884669; LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 104893066 LOC104893066; replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 104907896 LOC104907896; replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 104886674 LOC104886674; replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 104902405 LOC104902405; replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 104887682 LOC104887682; replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Other NER factors
E 104907763 LOC104907763; DNA excision repair protein ERCC-1 isoform X1 K10849 ERCC1; DNA excision repair protein ERCC-1
E 104892834 LOC104892834; DNA repair endonuclease UVH1 isoform X1 K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E 104889188 LOC104889188; DNA repair protein UVH3 K10846 ERCC5; DNA excision repair protein ERCC-5
E 104902910 LOC104902910; DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 104883138 LOC104883138; MMS19 nucleotide excision repair protein homolog isoform X1 K15075 MET18; DNA repair/transcription protein MET18/MMS19
E 104907504 LOC104907504; protein CIA1 isoform X1 K24730 CIAO1; cytosolic iron-sulfur protein assembly protein CIAO1
E 104893044 LOC104893044; protein AE7 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 104895022 LOC104895022; protein AE7-like 1 K26403 CIAO2; cytosolic iron-sulfur assembly component 2
E 104897936 LOC104897936; cullin-3A K03869 CUL3; cullin 3
E 104900041 LOC104900041; uncharacterized protein LOC104900041 K03872 ELOC; elongin-C
E 104906637 LOC104906637; uncharacterized protein LOC104906637 isoform X1 K03873 ELOB; elongin-B
E 104903581 LOC104903581; uncharacterized protein LOC104903581 isoform X1 K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 104908225 LOC104908225; DNA mismatch repair protein MSH2 K08735 MSH2; DNA mismatch repair protein MSH2
E 104906479 LOC104906479; DNA mismatch repair protein MSH3 K08736 MSH3; DNA mismatch repair protein MSH3
E 104894756 LOC104894756; DNA mismatch repair protein MSH6 K08737 MSH6; DNA mismatch repair protein MSH6
E 104902177 LOC104902177; DNA mismatch repair protein MSH7 isoform X1 K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E 104899413 LOC104899413; DNA mismatch repair protein MLH1 isoform X1 K08734 MLH1; DNA mismatch repair protein MLH1
E 104899154 LOC104899154; DNA mismatch repair protein PMS1 isoform X1 K10858 PMS2; DNA mismatch repair protein PMS2
E 104895732 LOC104895732; DNA mismatch repair protein MLH3 isoform X1 K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E 104890594 LOC104890594; DNA polymerase delta catalytic subunit K02327 POLD1; DNA polymerase delta subunit 1 [EC:2.7.7.7]
E 104889194 LOC104889194; DNA polymerase delta small subunit isoform X1 K02328 POLD2; DNA polymerase delta subunit 2
E 104891331 LOC104891331; uncharacterized protein LOC104891331 K03504 POLD3; DNA polymerase delta subunit 3
E 104890137 LOC104890137; uncharacterized protein LOC104890137 K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E 104884669 LOC104884669; LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 104893066 LOC104893066; replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 104907896 LOC104907896; replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 104886674 LOC104886674; replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 104902405 LOC104902405; replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 104887682 LOC104887682; replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D RFC (replication factor C)
E 104896137 LOC104896137; replication factor C subunit 1 isoform X1 K10754 RFC1; replication factor C subunit 1
E 104887304 LOC104887304; replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 104892328 LOC104892328; replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
E 104891078 LOC104891078; replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
E 104908347 LOC104908347; replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E 104894393 LOC104894393; proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
E 104900019 LOC104900019; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 104903846 LOC104903846; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
E 104882922 LOC104882922; exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 104893686 LOC104893686; exonuclease 1 K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E 104902910 LOC104902910; DNA ligase 1 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E 104889014 LOC104889014; uncharacterized protein LOC104889014 K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E 104907235 LOC104907235; double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 104889779 LOC104889779; DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 104896702 LOC104896702; nibrin homolog K10867 NBN; nibrin
D BRCA1-core complex
E 104899222 LOC104899222; BRCA1-associated RING domain protein 1 K10683 BARD1; BRCA1-associated RING domain protein 1
E 104901168 LOC104901168; protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1 K10683 BARD1; BRCA1-associated RING domain protein 1
D BRCA1-A complex
E 104886487 LOC104886487; uncharacterized protein LOC104886487 K20776 BABAM; BRISC and BRCA1-A complex member 1
E 104905121 LOC104905121; uncharacterized protein LOC104905121 K12173 BRE; BRCA1-A complex subunit BRE
E 104904591 LOC104904591; uncharacterized protein LOC104904591 K11864 BRCC3; BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
D BRCA1-B complex
E 104901128 LOC104901128; uncharacterized protein LOC104901128 isoform X1 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
E 104893213 LOC104893213; uncharacterized protein LOC104893213 isoform X1 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
E 104894746 LOC104894746; BRCT domain-containing protein At4g02110 K10728 TOPBP1; topoisomerase (DNA) II binding protein 1
D BRCA1-C complex
E 104907235 LOC104907235; double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 104889779 LOC104889779; DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
E 104896702 LOC104896702; nibrin homolog K10867 NBN; nibrin
D BRCA complex
E 104892556 LOC104892556; protein BREAST CANCER SUSCEPTIBILITY 2 homolog B K08775 BRCA2; breast cancer 2 susceptibility protein
E 104901695 LOC104901695; DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
D RecA family proteins
E 104901695 LOC104901695; DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 104905386 LOC104905386; DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 104900458 LOC104900458; DNA repair protein RAD51 homolog 4 isoform X1 K10871 RAD51L3; RAD51-like protein 3
E 104884415 LOC104884415; DNA repair protein XRCC2 homolog K10879 XRCC2; DNA-repair protein XRCC2
E 104907735 LOC104907735; DNA repair protein XRCC3 homolog K10880 XRCC3; DNA-repair protein XRCC3
D Rad52 family proteins
E 104892891 LOC104892891; DNA repair RAD52-like protein 1, mitochondrial K26556 RAD52-1; DNA repair RAD52-like protein 1, mitochondrial
E 104897449 LOC104897449; DNA repair RAD52-like protein 2, chloroplastic K26558 RAD52-2; DNA repair RAD52-like protein 2, chloroplastic
D Rad54 family proteins
E 104903989 LOC104903989; protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 104904306 LOC104904306; protein CHROMATIN REMODELING 35 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 104904480 LOC104904480; protein CHROMATIN REMODELING 25 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 104905956 LOC104905956; SNF2 domain-containing protein CLASSY 1 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 104908084 LOC104908084; SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E 104908089 LOC104908089; SNF2 domain-containing protein CLASSY 4 K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
D RecQ family DNA helicases
E 104890390 LOC104890390; ATP-dependent DNA helicase Q-like 1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 104893131 LOC104893131; ATP-dependent DNA helicase Q-like 2 isoform X1 K10899 RECQL; ATP-dependent DNA helicase Q1 [EC:5.6.2.4]
E 104890300 LOC104890300; ATP-dependent DNA helicase Q-like SIM K10900 WRN; werner syndrome ATP-dependent helicase [EC:5.6.2.4]
E 104883967 LOC104883967; ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104904548 LOC104904548; ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104897626 LOC104897626; ATP-dependent DNA helicase Q-like 5 K10730 RECQL4; ATP-dependent DNA helicase Q4 [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E 104883967 LOC104883967; ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104904548 LOC104904548; ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104889718 LOC104889718; DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 104890580 LOC104890580; DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 104908057 LOC104908057; recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 104903603 LOC104903603; uncharacterized protein LOC104903603 K15365 RMI2; RecQ-mediated genome instability protein 2
D RPA (replication factor A)
E 104884669 LOC104884669; LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 104893066 LOC104893066; replication protein A 70 kDa DNA-binding subunit A K07466 RFA1; replication factor A1
E 104907896 LOC104907896; replication protein A 70 kDa DNA-binding subunit B K07466 RFA1; replication factor A1
E 104886674 LOC104886674; replication protein A 32 kDa subunit A K10739 RFA2; replication factor A2
E 104902405 LOC104902405; replication protein A 32 kDa subunit B K10739 RFA2; replication factor A2
E 104887682 LOC104887682; replication protein A 14 kDa subunit B K10740 RPA3; replication factor A3
D Protein phosphatase 4
E 104891764 LOC104891764; serine/threonine-protein phosphatase PP-X isozyme 2 K15423 PPP4C; serine/threonine-protein phosphatase 4 catalytic subunit [EC:3.1.3.16]
E 104908946 LOC104908946; uncharacterized protein LOC104908946 K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2
E 104888409 LOC104888409; uncharacterized protein LOC104888409 K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
E 104902615 LOC104902615; uncharacterized protein LOC104902615 K19022 AP5B1; AP-5 complex subunit beta-1
E 104902394 LOC104902394; AP-5 complex subunit mu isoform X1 K19023 AP5M1; AP-5 complex subunit mu-1
E 104907057 LOC104907057; uncharacterized protein LOC104907057 K19025 AP5Z1; AP-5 complex subunit zeta-1
D SMC5-SMC6 complex
E 104907608 LOC104907608; structural maintenance of chromosomes protein 5 isoform X1 K22803 SMC5; structural maintenance of chromosomes protein 5
E 104906625 LOC104906625; structural maintenance of chromosomes protein 6B isoform X1 K22804 SMC6; structural maintenance of chromosomes protein 6
E 104899928 LOC104899928; uncharacterized protein LOC104899928 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 104901801 LOC104901801; LOW QUALITY PROTEIN: uncharacterized protein LOC104901801 K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E 104891470 LOC104891470; E3 SUMO-protein ligase MMS21 K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E 104889203 LOC104889203; non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
E 104889902 LOC104889902; non-structural maintenance of chromosomes element 4 homolog A K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E 104895492 LOC104895492; uncharacterized protein LOC104895492 isoform X1 K10882 EME1; crossover junction endonuclease EME1 [EC:3.1.22.-]
E 104906325 LOC104906325; LOW QUALITY PROTEIN: crossover junction endonuclease MUS81 K08991 MUS81; crossover junction endonuclease MUS81 [EC:3.1.22.-]
E 104894253 LOC104894253; protein DSS1 HOMOLOG ON CHROMOSOME V K10881 SHFM1; 26 proteasome complex subunit DSS1
E 104900278 LOC104900278; uncharacterized protein LOC104900278 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 104907463 LOC104907463; structure-specific endonuclease subunit slx1 isoform X1 K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E 104905482 LOC104905482; flap endonuclease GEN-like 1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 104906477 LOC104906477; single-strand DNA endonuclease 1 isoform X1 K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E 104895461 LOC104895461; uncharacterized protein LOC104895461 K19026 SPG11; spatacsin
E 104887752 LOC104887752; uncharacterized protein LOC104887752 isoform X1 K19027 ZFYVE26; zinc finger FYVE domain-containing protein 26
E 104894890 LOC104894890; protein MRG1 isoform X1 K11339 MORF4L1; mortality factor 4-like protein 1
E 104897395 LOC104897395; uncharacterized protein LOC104897395 isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 104907653 LOC104907653; uncharacterized protein LOC104907653 isoform X1 K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
E 104895347 LOC104895347; ATPase family AAA domain-containing protein FIGL1 K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E 104897797 LOC104897797; uncharacterized protein LOC104897797 K25770 ZSWIM7; zinc finger SWIM domain-containing protein 7
E 104907345 LOC104907345; uncharacterized protein LOC104907345 K27803 HROB; homologous recombination OB-fold protein
E 104884306 LOC104884306; probable DNA helicase MCM8 isoform X1 K10737 MCM8; DNA helicase MCM8 [EC:5.6.2.4]
E 104904228 LOC104904228; probable DNA helicase MCM9 isoform X1 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4]
E 104896380 LOC104896380; uncharacterized protein LOC104896380 K28623 MRNIP; MRN complex-interacting protein
E 104889780 LOC104889780; 3'-5' exonuclease isoform X1 K22807 WRNexo; werner syndrome-like exonuclease [EC:3.1.11.-]
E 104891835 LOC104891835; DNA-dependent metalloprotease WSS1 isoform X1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 104907275 LOC104907275; DNA-dependent metalloprotease WSS1 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E 104897966 LOC104897966; single-stranded DNA-binding protein WHY1, chloroplastic isoform X1 K26559 WHY1; single-stranded DNA-binding protein WHY1
E 104892868 LOC104892868; single-stranded DNA-binding protein WHY2, mitochondrial K26561 WHY2; single-stranded DNA-binding protein WHY2
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E 104905416 LOC104905416; ATP-dependent DNA helicase 2 subunit KU80 isoform X1 K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E 104907235 LOC104907235; double-strand break repair protein MRE11 isoform X1 K10865 MRE11; double-strand break repair protein MRE11
E 104889779 LOC104889779; DNA repair protein RAD50 K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E 104890064 LOC104890064; DNA ligase 4 K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E 104888754 LOC104888754; DNA repair protein XRCC4 K10886 XRCC4; DNA-repair protein XRCC4
D X-family DNA polymerases
E 104900512 LOC104900512; DNA polymerase lambda isoform X1 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-]
D Other NHEJ factors
E 104892527 LOC104892527; transcription factor bHLH140 K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E 104900976 LOC104900976; uncharacterized protein LOC104900976 K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
E 104888575 LOC104888575; structural maintenance of chromosomes flexible hinge domain-containing protein GMI1 isoform X1 K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1
C FA (Fanconi anemia) pathway
D FA core complex
E 104895878 LOC104895878; DEAD-box ATP-dependent RNA helicase FANCM isoform X1 K10896 FANCM; fanconi anemia group M protein
D FA core complex binding factors
E 104885108 LOC104885108; protein MHF1 homolog isoform X1 K11511 APITD1; centromere protein S
E 104908568 LOC104908568; protein MHF2 homolog K15360 STRA13; centromere protein X
D Bloom's syndrome complex (BTR)
E 104883967 LOC104883967; ATP-dependent DNA helicase Q-like 3 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104904548 LOC104904548; ATP-dependent DNA helicase Q-like 4A isoform X1 K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E 104889718 LOC104889718; DNA topoisomerase 3-beta isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 104890580 LOC104890580; DNA topoisomerase 3-alpha isoform X1 K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E 104908057 LOC104908057; recQ-mediated genome instability protein 1 isoform X1 K10990 RMI1; RecQ-mediated genome instability protein 1
E 104903603 LOC104903603; uncharacterized protein LOC104903603 K15365 RMI2; RecQ-mediated genome instability protein 2
D FANCD2-I complex
D Downstream FA components
E 104892556 LOC104892556; protein BREAST CANCER SUSCEPTIBILITY 2 homolog B K08775 BRCA2; breast cancer 2 susceptibility protein
E 104901128 LOC104901128; uncharacterized protein LOC104901128 isoform X1 K15362 BRIP1; fanconi anemia group J protein [EC:5.6.2.3]
D Other FA pathway factors
E 104888519 LOC104888519; fanconi-associated nuclease 1 homolog isoform X1 K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E 104901695 LOC104901695; DNA repair protein RAD51 homolog K04482 RAD51; DNA repair protein RAD51
E 104905386 LOC104905386; DNA repair protein RAD51 homolog 3 isoform X1 K10870 RAD51L2; RAD51-like protein 2
E 104908733 LOC104908733; uncharacterized protein LOC104908733 isoform X1 K11137 TELO2; telomere length regulation protein
E 104890989 LOC104890989; uncharacterized protein LOC104890989 K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
E 104902517 LOC104902517; phytochrome-associated serine/threonine-protein phosphatase K15498 PPP6C; serine/threonine-protein phosphatase 6 catalytic subunit [EC:3.1.3.16]
E 104901230 LOC104901230; uncharacterized protein LOC104901230 isoform X1 K15501 PPP6R3; serine/threonine-protein phosphatase 6 regulatory subunit 3
E 104891722 LOC104891722; uncharacterized protein LOC104891722 isoform X1 K15503 ANKRD44; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B
D Ubiquitin ligases
D Others
E 104900548 LOC104900548; uncharacterized protein LOC104900548 K23314 WRAP53; telomerase Cajal body protein 1
E 104899313 LOC104899313; uncharacterized protein LOC104899313 K24752 WDR70; WD repeat-containing protein 70
E 104889014 LOC104889014; uncharacterized protein LOC104889014 K24755 WDR76; WD repeat-containing protein 76
E 104894418 LOC104894418; uncharacterized protein LOC104894418 K28434 HMCES; abasic site processing protein HMCES
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D 104898859 LOC104898859; DNA polymerase eta isoform X1 K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D 104904866 LOC104904866; DNA polymerase kappa isoform X1 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D 104904934 LOC104904934; DNA repair protein REV1 isoform X1 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
D 104890826 LOC104890826; DNA polymerase zeta catalytic subunit isoform X1 K02350 REV3L; DNA polymerase zeta [EC:2.7.7.7]
C A-family DNA polymerase
C Rad6 epistasis group
D 104897962 LOC104897962; ubiquitin-conjugating enzyme E2 2 K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D 104903614 LOC104903614; DNA repair protein RAD5A K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D 104889518 LOC104889518; putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D 104899836 LOC104899836; ubiquitin-conjugating enzyme E2 variant 1D K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant
D 104891426 LOC104891426; ubiquitin-conjugating enzyme E2 35 isoform X1 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
D 104903539 LOC104903539; ubiquitin-conjugating enzyme E2 36 K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D 104894393 LOC104894393; proliferating cell nuclear antigen-like K04802 PCNA; proliferating cell nuclear antigen
D 104900019 LOC104900019; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
D 104903846 LOC104903846; proliferating cell nuclear antigen K04802 PCNA; proliferating cell nuclear antigen
B Check point factors
C Rad9-Hus1-Rad1 complex
D 104890310 LOC104890310; uncharacterized protein LOC104890310 K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D 104899203 LOC104899203; uncharacterized protein LOC104899203 K10903 HUS1; HUS1 checkpoint protein
D 104893006 LOC104893006; uncharacterized protein LOC104893006 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D 104895311 LOC104895311; cell cycle checkpoint protein RAD17 isoform X1 K06662 HRAD17; cell cycle checkpoint protein
D 104887304 LOC104887304; replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 104892328 LOC104892328; replication factor C subunit 2 K10755 RFC2_4; replication factor C subunit 2/4
D 104891078 LOC104891078; replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
D 104908347 LOC104908347; replication factor C subunit 3 K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D 104893006 LOC104893006; uncharacterized protein LOC104893006 K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D 104888327 LOC104888327; uncharacterized protein LOC104888327 isoform X1 K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D 104902688 LOC104902688; uncharacterized protein LOC104902688 isoform X1 K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
C Triple T complex
D 104908733 LOC104908733; uncharacterized protein LOC104908733 isoform X1 K11137 TELO2; telomere length regulation protein
D 104887100 LOC104887100; uncharacterized protein LOC104887100 isoform X1 K20403 TTI1; TELO2-interacting protein 1
D 104883411 LOC104883411; LOW QUALITY PROTEIN: uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
D 104903721 LOC104903721; LOW QUALITY PROTEIN: uncharacterized protein At2g39910 K23115 TTI2; TELO2-interacting protein 2
C BAG6-UBL4A-GET4 complex
D 104901844 LOC104901844; ubiquitin-like domain-containing protein CIP73 K23390 BAG6; large proline-rich protein BAG6
C SOSS complex
D 104889197 LOC104889197; uncharacterized protein LOC104889197 K28889 NABP; SOSS complex subunit B
C Other check point factors
D 104903878 LOC104903878; serine/threonine-protein kinase ATR K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D 104894278 LOC104894278; serine/threonine-protein kinase ATM isoform X1 K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D 104891554 LOC104891554; 14-3-3 protein 1 K06630 YWHAE; 14-3-3 protein epsilon
D 104891933 LOC104891933; 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 104895805 LOC104895805; 14-3-3-like protein GF14 iota K06630 YWHAE; 14-3-3 protein epsilon
D 104896024 LOC104896024; 14-3-3 protein 2 isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 104896060 LOC104896060; 14-3-3-like protein GF14 kappa K06630 YWHAE; 14-3-3 protein epsilon
D 104900484 LOC104900484; 14-3-3-like protein D isoform X1 K06630 YWHAE; 14-3-3 protein epsilon
D 104903545 LOC104903545; 14-3-3-like protein D K06630 YWHAE; 14-3-3 protein epsilon
D 104905814 LOC104905814; 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 104908435 LOC104908435; 14-3-3-like protein K06630 YWHAE; 14-3-3 protein epsilon
D 104898957 LOC104898957; wee1-like protein kinase K06632 WEE1; wee1-like protein kinase [EC:2.7.11.1]
D 104884769 LOC104884769; uncharacterized protein LOC104884769 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 104899077 LOC104899077; uncharacterized protein LOC104899077 isoform X1 K20780 MDC1; mediator of DNA damage checkpoint protein 1
D 104889260 LOC104889260; serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104889959 LOC104889959; serine/threonine-protein kinase Nek6 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104891123 LOC104891123; serine/threonine-protein kinase Nek3 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104894549 LOC104894549; serine/threonine-protein kinase Nek2 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104899845 LOC104899845; serine/threonine-protein kinase Nek5 isoform X1 K08857 NEK1_4_5; serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
D 104893205 LOC104893205; uncharacterized protein LOC104893205 isoform X1 K22422 DONSON; protein downstream neighbor of Son
D 104900334 LOC104900334; protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 K12196 VPS4; vacuolar protein-sorting-associated protein 4
D 104884550 LOC104884550; uncharacterized protein LOC104884550 K25059 SDE2; replication stress response regulator SDE2
D 104887767 LOC104887767; protein DECREASED SIZE EXCLUSION LIMIT 1 isoform X1 K24770 DSE1; protein decreased size exclusion limit 1
B Other factors with a suspected DNA repair function
C DNA polymerases
D 104884718 LOC104884718; helicase and polymerase-containing protein TEBICHI isoform X1 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7]
D 104904785 LOC104904785; rDNA transcriptional regulator pol5 K02331 POL5; DNA polymerase phi [EC:2.7.7.7]
D 104888354 LOC104888354; uncharacterized protein LOC104888354 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7]
C Nucleases
D 104888897 LOC104888897; DNA cross-link repair protein SNM1 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 104895399 LOC104895399; uncharacterized protein LOC104895399 isoform X1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 104897095 LOC104897095; DNA cross-link repair protein SNM1 K15340 DCLRE1A; DNA cross-link repair 1A protein
D 104903041 LOC104903041; uncharacterized protein LOC104903041 K15341 DCLRE1B; DNA cross-link repair 1B protein [EC:3.1.-.-]
D 104886733 LOC104886733; uncharacterized protein LOC104886733 isoform X1 K21813 ENDOV; endonuclease V [EC:3.1.26.-]
D 104893980 LOC104893980; uncharacterized protein LOC104893980 isoform X1 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-]
D 104909099 LOC104909099; endonuclease 1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
D 104909100 LOC104909100; endonuclease 4 isoform X1 K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D 104902824 LOC104902824; switch 2 isoform X1 K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D 104887874 LOC104887874; pre-mRNA-processing factor 19 K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D 104890617 LOC104890617; cell division cycle 5-like protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D 104893690 LOC104893690; pre-mRNA-splicing factor SPF27 homolog K12861 BCAS2; pre-mRNA-splicing factor SPF27
D 104899050 LOC104899050; protein pleiotropic regulatory locus 1 K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D 104896345 LOC104896345; nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 104893124 LOC104893124; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D 104895476 LOC104895476; ribonucleoside-diphosphate reductase large subunit K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D 104907976 LOC104907976; ribonucleoside-diphosphate reductase small chain A K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D 104892426 LOC104892426; deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E 104902628 LOC104902628; uracil-DNA glycosylase, mitochondrial K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E 104882981 LOC104882981; DNA-3-methyladenine glycosylase 1 isoform X1 K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E 104889174 LOC104889174; DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E 104894489 LOC104894489; adenine DNA glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E 104887122 LOC104887122; uncharacterized protein LOC104887122 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104896146 LOC104896146; uncharacterized protein LOC104896146 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104904875 LOC104904875; uncharacterized protein LOC104904875 isoform X1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E 104904537 LOC104904537; formamidopyrimidine-DNA glycosylase isoform X1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E 104888774 LOC104888774; endonuclease III homolog 1, chloroplastic isoform X1 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
E 104894208 LOC104894208; putative DNA glycosylase At3g47830 K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E 104889420 LOC104889420; DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1 K01142 xthA; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
D DNA polymerase I
E 104889482 LOC104889482; DNA polymerase I A, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E 104889482 LOC104889482; DNA polymerase I A, chloroplastic/mitochondrial isoform X1 K02335 polA; DNA polymerase I [EC:2.7.7.7]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F 125493612 LOC125493612; LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit beta'-like K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F 130591596 LOC130591596; LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit alpha-like K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E 104900714 LOC104900714; uncharacterized protein LOC104900714 K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E 104908216 LOC104908216; single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E 104907597 LOC104907597; DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 104909036 LOC104909036; DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D RecFOR pathway proteins
E 104907597 LOC104907597; DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
E 104909036 LOC104909036; DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
E 104903728 LOC104903728; uncharacterized protein LOC104903728 isoform X1 K04485 radA; DNA repair protein RadA/Sms
E 104896864 LOC104896864; ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F 104883791 LOC104883791; DNA gyrase subunit A, chloroplastic/mitochondrial K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F 104889495 LOC104889495; DNA gyrase subunit B, chloroplastic/mitochondrial K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
F 104891323 LOC104891323; uncharacterized protein LOC104891323 isoform X1 K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
D 104907597 LOC104907597; DNA repair protein recA homolog 1, chloroplastic isoform X1 K03553 recA; recombination protein RecA
D 104909036 LOC104909036; DNA repair protein recA homolog 3, mitochondrial isoform X1 K03553 recA; recombination protein RecA
D 104908216 LOC104908216; single-stranded DNA-binding protein, mitochondrial K03111 ssb; single-strand DNA-binding protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D 104896345 LOC104896345; nudix hydrolase 1 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D 104893124 LOC104893124; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
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#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 23, 2026