+F Repair protein KO #

  DNA Repair and Recombination Proteins - Bacillus velezensis YAU B9601-Y2

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D BANAU_1268 ogt; methylated-DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BANAU_3702 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BANAU_3763 yxlJ; DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BANAU_0790 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BANAU_2200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D BANAU_0476 RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_3381 yvcI; NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_3819 mutT3; 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_2974 ytkD; Nucleoside triphosphatase ytkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_0392 mutT1; MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_1885 yncF3; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BANAU_1830 yncF1; putative deoxyuridine 5'-triphosphate nucleotidohydrolase yncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D BANAU_1268 ogt; methylated-DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BANAU_3972 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-] D BANAU_3971 adaB; O6-methylguanine-DNA methyltransferase AdaB K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E BANAU_3702 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E BANAU_0745 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E BANAU_3763 yxlJ; DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E BANAU_0790 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E BANAU_2827 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E BANAU_2200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E BANAU_2494 yqfS; deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E BANAU_3521 ywqL; deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E BANAU_2682 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BANAU_1801 yorK; SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E BANAU_0618 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E BANAU_2828 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E BANAU_3412 uvrA; UvrABC system protein A UvrA protein K03701 uvrA; excinuclease ABC subunit A E BANAU_3413 uvrB; UvrABC system protein B Protein uvrB K03702 uvrB; excinuclease ABC subunit B E BANAU_2770 uvrC1; UvrABC system protein C Protein uvrC K03703 uvrC; excinuclease ABC subunit C E BANAU_3252 yvgS; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BANAU_1090 yjcD; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BANAU_0617 pcrA; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BANAU_2828 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E BANAU_0618 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F BANAU_0106 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F BANAU_0107 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F BANAU_0142 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F BANAU_3621 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta F BANAU_1521 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F BANAU_0055 mfd; transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E BANAU_1659 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS E BANAU_2780 mutSB; DNA mismatch repair protein mutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E BANAU_1660 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E BANAU_2416 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E BANAU_2415 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E BANAU_2845 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BANAU_1802 yorL; SPBc2 prophage-derived DNA polymerase yorL K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E BANAU_1612 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E BANAU_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E BANAU_2537 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E BANAU_0031 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E BANAU_0020 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E BANAU_0618 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E BANAU_3252 yvgS; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BANAU_1090 yjcD; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BANAU_0617 pcrA; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E BANAU_3541 ywpH; Single-stranded DNA-binding protein SSB K03111 ssb; single-strand DNA-binding protein E BANAU_3974 ssb; Single-stranded DNA-binding protein SSB K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E BANAU_2668 recD; exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E BANAU_1649 recA; Protein recA Recombinase A K03553 recA; recombination protein RecA E BANAU_2695 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BANAU_2694 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E BANAU_1523 priA; primosomal protein N' (replication factor Y,superfamily II helicase) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E BANAU_0985 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E BANAU_0984 sbcD; DNA double-strand break repair protein mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E BANAU_1649 recA; Protein recA Recombinase A K03553 recA; recombination protein RecA E BANAU_0086 radA; radA-like DNA repair protein K04485 radA; DNA repair protein RadA/Sms E BANAU_0004 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF E BANAU_1539 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E BANAU_2682 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BANAU_1801 yorK; SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E BANAU_2508 recO; DNA repair protein recO Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) E BANAU_0022 recR; Recombination protein RecR K06187 recR; recombination protein RecR E BANAU_2410 recN; DNA repair protein recN Recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N) E BANAU_2197 recU; Holliday junction resolvase recU K03700 recU; recombination protein U E BANAU_2695 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E BANAU_2694 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E BANAU_0983 addA; recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E BANAU_0982 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E BANAU_0985 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50 E BANAU_0984 sbcD; DNA double-strand break repair protein mre11 K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E BANAU_1255 ykoV; Protein Ku70 Protein mus-51 K10979 ku; DNA end-binding protein Ku E BANAU_1254 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F BANAU_0007 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F BANAU_0006 gyrB; DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F BANAU_1565 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F BANAU_2246 hbs; DNA-binding protein HU DNA-binding protein II K03530 hupB; DNA-binding protein HU-beta F BANAU_1750 hup; putative HU-related DNA-binding protein (phage SPbeta) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F BANAU_2682 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BANAU_1801 yorK; SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F BANAU_2508 recO; DNA repair protein recO Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O) F BANAU_0022 recR; Recombination protein RecR K06187 recR; recombination protein RecR F BANAU_0618 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F BANAU_2018 yocI; putative ATP-dependent DNA helicase YocI K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BANAU_2269 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F BANAU_3412 uvrA; UvrABC system protein A UvrA protein K03701 uvrA; excinuclease ABC subunit A F BANAU_3413 uvrB; UvrABC system protein B Protein uvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D BANAU_2371 yqjH; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BANAU_2335 yqjW; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BANAU_1715 uvrX; DNA polymerase V K03502 umuC; DNA polymerase V C Other SOS response factors D BANAU_1649 recA; Protein recA Recombinase A K03553 recA; recombination protein RecA D BANAU_1891 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D BANAU_2410 recN; DNA repair protein recN Recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N) D BANAU_3541 ywpH; Single-stranded DNA-binding protein SSB K03111 ssb; single-strand DNA-binding protein D BANAU_3974 ssb; Single-stranded DNA-binding protein SSB K03111 ssb; single-strand DNA-binding protein D BANAU_0777 recX; Regulatory protein recX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D BANAU_2781 yshC; putative protein YshC K02347 polX; DNA polymerase (family X) C DNA helicases D BANAU_2180 dinG1; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D BANAU_2206 dinG3; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D BANAU_0476 RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_3381 yvcI; NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_3819 mutT3; 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_2974 ytkD; Nucleoside triphosphatase ytkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_0392 mutT1; MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BANAU_1885 yncF3; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BANAU_1830 yncF1; putative deoxyuridine 5'-triphosphate nucleotidohydrolase yncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BANAU_1697 nrdE1; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BANAU_1826 nrdE3; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BANAU_1827 bnrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D BANAU_1698 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D BANAU_2849 ytqI; hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024