+F Repair protein KO
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DNA Repair and Recombination Proteins - Bacillus velezensis YAU B9601-Y2
%
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BANAU_1268 ogt; methylated-DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BANAU_3702 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BANAU_3763 yxlJ; DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BANAU_0790 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BANAU_2200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D BANAU_0476 RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_3381 yvcI; NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_3819 mutT3; 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_2974 ytkD; Nucleoside triphosphatase ytkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_0392 mutT1; MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_1885 yncF3; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BANAU_1830 yncF1; putative deoxyuridine 5'-triphosphate nucleotidohydrolase yncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D BANAU_1268 ogt; methylated-DNA-protein cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D BANAU_3972 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D BANAU_3971 adaB; O6-methylguanine-DNA methyltransferase AdaB K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E BANAU_3702 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E BANAU_0745 alkA; DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E BANAU_3763 yxlJ; DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E BANAU_0790 yfhQ; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E BANAU_2827 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E BANAU_2200 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E BANAU_2494 yqfS; deoxyribonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
E BANAU_3521 ywqL; deoxyribonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7]
D RecJ
E BANAU_2682 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BANAU_1801 yorK; SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E BANAU_0618 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E BANAU_2828 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E BANAU_3412 uvrA; UvrABC system protein A UvrA protein K03701 uvrA; excinuclease ABC subunit A
E BANAU_3413 uvrB; UvrABC system protein B Protein uvrB K03702 uvrB; excinuclease ABC subunit B
E BANAU_2770 uvrC1; UvrABC system protein C Protein uvrC K03703 uvrC; excinuclease ABC subunit C
E BANAU_3252 yvgS; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BANAU_1090 yjcD; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BANAU_0617 pcrA; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BANAU_2828 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E BANAU_0618 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F BANAU_0106 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F BANAU_0107 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F BANAU_0142 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F BANAU_3621 rpoE; DNA-directed RNA polymerase subunit delta K03048 rpoE; DNA-directed RNA polymerase subunit delta
F BANAU_1521 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F BANAU_0055 mfd; transcription-repair coupling factor (superfamily II helicase) K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E BANAU_1659 mutS; DNA mismatch repair protein mutS K03555 mutS; DNA mismatch repair protein MutS
E BANAU_2780 mutSB; DNA mismatch repair protein mutS K07456 mutS2; DNA mismatch repair protein MutS2
D Molecular matchmaker
E BANAU_1660 mutL; DNA mismatch repair protein mutL K03572 mutL; DNA mismatch repair protein MutL
D Strand discrimination factor
D DNA exonucleases
E BANAU_2416 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E BANAU_2415 xseB; exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E BANAU_2845 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BANAU_1802 yorL; SPBc2 prophage-derived DNA polymerase yorL K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E BANAU_1612 polC; DNA polymerase III PolC K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
E BANAU_0002 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E BANAU_2537 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E BANAU_0031 holB; DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E BANAU_0020 dnaX; DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E BANAU_0618 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E BANAU_3252 yvgS; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BANAU_1090 yjcD; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BANAU_0617 pcrA; DNA helicase II / ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E BANAU_3541 ywpH; Single-stranded DNA-binding protein SSB K03111 ssb; single-strand DNA-binding protein
E BANAU_3974 ssb; Single-stranded DNA-binding protein SSB K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E BANAU_2668 recD; exodeoxyribonuclease V alpha subunit K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
E BANAU_1649 recA; Protein recA Recombinase A K03553 recA; recombination protein RecA
E BANAU_2695 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BANAU_2694 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E BANAU_1523 priA; primosomal protein N' (replication factor Y,superfamily II helicase) K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
E BANAU_0985 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E BANAU_0984 sbcD; DNA double-strand break repair protein mre11 K03547 sbcD; DNA repair protein SbcD/Mre11
D RecFOR pathway proteins
E BANAU_1649 recA; Protein recA Recombinase A K03553 recA; recombination protein RecA
E BANAU_0086 radA; radA-like DNA repair protein K04485 radA; DNA repair protein RadA/Sms
E BANAU_0004 recF; DNA replication and repair protein recF K03629 recF; DNA replication and repair protein RecF
E BANAU_1539 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E BANAU_2682 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BANAU_1801 yorK; SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E BANAU_2508 recO; DNA repair protein recO Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O)
E BANAU_0022 recR; Recombination protein RecR K06187 recR; recombination protein RecR
E BANAU_2410 recN; DNA repair protein recN Recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N)
E BANAU_2197 recU; Holliday junction resolvase recU K03700 recU; recombination protein U
E BANAU_2695 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
E BANAU_2694 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D AddAB pathway proteins
E BANAU_0983 addA; recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
E BANAU_0982 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D Other HR factor
D Archaeal homologous recombinant proteins
E BANAU_0985 sbcC; Nuclease sbcCD subunit C K03546 sbcC; DNA repair protein SbcC/Rad50
E BANAU_0984 sbcD; DNA double-strand break repair protein mre11 K03547 sbcD; DNA repair protein SbcD/Mre11
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
E BANAU_1255 ykoV; Protein Ku70 Protein mus-51 K10979 ku; DNA end-binding protein Ku
E BANAU_1254 ligD; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F BANAU_0007 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F BANAU_0006 gyrB; DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F BANAU_1565 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
F BANAU_2246 hbs; DNA-binding protein HU DNA-binding protein II K03530 hupB; DNA-binding protein HU-beta
F BANAU_1750 hup; putative HU-related DNA-binding protein (phage SPbeta) K03530 hupB; DNA-binding protein HU-beta
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F BANAU_2682 yrvE; single-stranded-DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BANAU_1801 yorK; SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F BANAU_2508 recO; DNA repair protein recO Recombination protein O K03584 recO; DNA repair protein RecO (recombination protein O)
F BANAU_0022 recR; Recombination protein RecR K06187 recR; recombination protein RecR
F BANAU_0618 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F BANAU_2018 yocI; putative ATP-dependent DNA helicase YocI K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BANAU_2269 recQ; RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F BANAU_3412 uvrA; UvrABC system protein A UvrA protein K03701 uvrA; excinuclease ABC subunit A
F BANAU_3413 uvrB; UvrABC system protein B Protein uvrB K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D BANAU_2371 yqjH; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D BANAU_2335 yqjW; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D BANAU_1715 uvrX; DNA polymerase V K03502 umuC; DNA polymerase V
C Other SOS response factors
D BANAU_1649 recA; Protein recA Recombinase A K03553 recA; recombination protein RecA
D BANAU_1891 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D BANAU_2410 recN; DNA repair protein recN Recombination protein N K03631 recN; DNA repair protein RecN (Recombination protein N)
D BANAU_3541 ywpH; Single-stranded DNA-binding protein SSB K03111 ssb; single-strand DNA-binding protein
D BANAU_3974 ssb; Single-stranded DNA-binding protein SSB K03111 ssb; single-strand DNA-binding protein
D BANAU_0777 recX; Regulatory protein recX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
D BANAU_2781 yshC; putative protein YshC K02347 polX; DNA polymerase (family X)
C DNA helicases
D BANAU_2180 dinG1; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D BANAU_2206 dinG3; ATP-dependent DNA helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
C Modulation of nucleotide pools
D BANAU_0476 RNA pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_3381 yvcI; NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_3819 mutT3; 7,8-dihydro-8-oxoguanine triphosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_2974 ytkD; Nucleoside triphosphatase ytkD K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_0392 mutT1; MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D BANAU_1885 yncF3; dUTP pyrophosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BANAU_1830 yncF1; putative deoxyuridine 5'-triphosphate nucleotidohydrolase yncF K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D BANAU_1697 nrdE1; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BANAU_1826 nrdE3; ribonucleoside-diphosphate reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D BANAU_1827 bnrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D BANAU_1698 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D BANAU_2849 ytqI; hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024