+F Repair protein KO #

  DNA Repair and Recombination Proteins - Blautia pseudococcoides

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D A4V09_06385 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E A4V09_04085 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E A4V09_10795 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E A4V09_03305 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E A4V09_23520 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E A4V09_15385 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E A4V09_12995 helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D A4V09_06455 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A4V09_11610 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D A4V09_06385 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E A4V09_04085 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E A4V09_10795 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E A4V09_14070 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E A4V09_15850 endonuclease VIII K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E A4V09_23520 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E A4V09_15385 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E A4V09_13060 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E A4V09_04820 endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D RecJ E A4V09_09845 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E A4V09_02950 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E A4V09_05000 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E A4V09_06610 uvrA; ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A E A4V09_02275 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E A4V09_15160 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E A4V09_00905 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E A4V09_02035 nucleotide excision repair endonuclease K03703 uvrC; excinuclease ABC subunit C E A4V09_14330 DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A4V09_03660 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A4V09_05000 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E A4V09_02950 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F A4V09_17850 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F A4V09_17845 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F A4V09_15450 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F A4V09_07855 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F A4V09_21015 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E A4V09_06950 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E A4V09_23550 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 E A4V09_17805 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E A4V09_06945 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor E A4V09_09000 restriction endonuclease K03573 mutH; DNA mismatch repair protein MutH D DNA exonucleases E A4V09_03760 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E A4V09_03765 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E A4V09_19125 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E A4V09_14765 PolC-type DNA polymerase III K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E A4V09_19855 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E A4V09_02240 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E A4V09_20495 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E A4V09_06995 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E A4V09_07630 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E A4V09_23525 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E A4V09_16880 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E A4V09_02950 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E A4V09_14330 DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A4V09_03660 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E A4V09_02135 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E A4V09_18315 hypothetical protein K03111 ssb; single-strand DNA-binding protein E A4V09_09005 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] E A4V09_14315 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E A4V09_18215 hypothetical protein K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E A4V09_02285 AAA family ATPase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E A4V09_03850 recombinase RecA K03553 recA; recombination protein RecA E A4V09_05975 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E A4V09_05980 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E A4V09_02590 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E A4V09_05425 ATP-binding cassette family protein K03546 sbcC; DNA repair protein SbcC/Rad50 E A4V09_05420 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E A4V09_03850 recombinase RecA K03553 recA; recombination protein RecA E A4V09_10930 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E A4V09_22095 hypothetical protein K04485 radA; DNA repair protein RadA/Sms E A4V09_19845 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E A4V09_14520 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E A4V09_06045 DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E A4V09_00335 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E A4V09_09845 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E A4V09_03175 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E A4V09_16870 recombination protein RecR K06187 recR; recombination protein RecR E A4V09_03795 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E A4V09_06150 Holliday junction resolvase RecU K03700 recU; recombination protein U E A4V09_05975 Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E A4V09_05980 Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E A4V09_15975 helicase-exonuclease AddAB subunit AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E A4V09_17175 type I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E A4V09_05425 ATP-binding cassette family protein K03546 sbcC; DNA repair protein SbcC/Rad50 E A4V09_05420 hypothetical protein K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E A4V09_04270 Ku protein K10979 ku; DNA end-binding protein Ku E A4V09_04265 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F A4V09_19835 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F A4V09_11695 DNA topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F A4V09_19840 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F A4V09_11700 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F A4V09_14985 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F A4V09_13340 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F A4V09_09845 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F A4V09_03175 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F A4V09_16870 recombination protein RecR K06187 recR; recombination protein RecR F A4V09_02950 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F A4V09_20085 DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F A4V09_06610 uvrA; ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A F A4V09_02275 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F A4V09_15160 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D A4V09_09140 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D A4V09_13040 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D A4V09_08775 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D A4V09_03850 recombinase RecA K03553 recA; recombination protein RecA D A4V09_06505 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D A4V09_03795 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D A4V09_02135 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D A4V09_18315 hypothetical protein K03111 ssb; single-strand DNA-binding protein D A4V09_03855 RecX family transcriptional regulator K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D A4V09_07105 Rad3-related DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D A4V09_06740 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D A4V09_06455 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D A4V09_11610 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D A4V09_03080 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A4V09_13930 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D A4V09_03085 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D A4V09_11650 DHH family phosphoesterase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024