+F Repair protein KO
#
DNA Repair and Recombination Proteins - Bipolaris zeicola
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D COCCADRAFT_39488 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D COCCADRAFT_27645 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D COCCADRAFT_103138 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E COCCADRAFT_103025 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E COCCADRAFT_6753 hypothetical protein K20813 TDG; thymine-DNA glycosylase [EC:3.2.2.29]
E COCCADRAFT_38353 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E COCCADRAFT_35738 hypothetical protein K10801 MBD4; methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
E COCCADRAFT_29100 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
E COCCADRAFT_96578 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E COCCADRAFT_33421 hypothetical protein K10771 APEX1; AP endonuclease 1 [EC:3.1.11.2]
E COCCADRAFT_471 hypothetical protein K10772 APEX2; AP endonuclease 2 [EC:3.1.11.2]
D Long Patch-BER factors
E DNA polymerase delta complex
F COCCADRAFT_36950 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
F COCCADRAFT_32667 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
F COCCADRAFT_93044 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
E DNA polymerase epsilon complex
F COCCADRAFT_3084 hypothetical protein K02325 POLE2; DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
F COCCADRAFT_33151 hypothetical protein K02326 POLE3; DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
F COCCADRAFT_39584 hypothetical protein K03506 POLE4; DNA polymerase epsilon subunit 4 [EC:2.7.7.7]
E COCCADRAFT_41633 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E COCCADRAFT_84154 hypothetical protein K04799 FEN1; flap endonuclease-1 [EC:3.1.-.-]
E COCCADRAFT_36267 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
D Short Patch-BER factors
D Other BER factors
E COCCADRAFT_8516 hypothetical protein K10862 TDP1; tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
E COCCADRAFT_6096 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E COCCADRAFT_101407 hypothetical protein K08073 PNKP; bifunctional polynucleotide phosphatase/kinase [EC:3.1.3.32 2.7.1.78]
E COCCADRAFT_8231 hypothetical protein K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4 [EC:2.4.2.30]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
F COCCADRAFT_66610 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F COCCADRAFT_88906 hypothetical protein K10838 XPC; xeroderma pigmentosum group C-complementing protein
F COCCADRAFT_36312 hypothetical protein K10839 RAD23; UV excision repair protein RAD23
E Cul4-DDB2 complex
F COCCADRAFT_95811 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F COCCADRAFT_6726 hypothetical protein K10609 CUL4; cullin 4
F COCCADRAFT_8611 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
E NER4 complex
F COCCADRAFT_34885 hypothetical protein K15082 RAD7; DNA repair protein RAD7
F COCCADRAFT_6221 hypothetical protein K15083 RAD16; DNA repair protein RAD16
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
F COCCADRAFT_95896 hypothetical protein K03006 RPB1; DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
F COCCADRAFT_101489 hypothetical protein K03010 RPB2; DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
F COCCADRAFT_81845 hypothetical protein K03011 RPB3; DNA-directed RNA polymerase II subunit RPB3
F COCCADRAFT_101950 hypothetical protein K03012 RPB4; DNA-directed RNA polymerase II subunit RPB4
F COCCADRAFT_99720 hypothetical protein K03013 RPABC1; DNA-directed RNA polymerases I, II, and III subunit RPABC1
F COCCADRAFT_3947 hypothetical protein K03014 RPABC2; DNA-directed RNA polymerases I, II, and III subunit RPABC2
F COCCADRAFT_85658 hypothetical protein K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7
F COCCADRAFT_107606 hypothetical protein K03016 RPABC3; DNA-directed RNA polymerases I, II, and III subunit RPABC3
F COCCADRAFT_54419 hypothetical protein K03007 RPABC5; DNA-directed RNA polymerases I, II, and III subunit RPABC5
F COCCADRAFT_693 hypothetical protein K03008 RPB11; DNA-directed RNA polymerase II subunit RPB11
F COCCADRAFT_40509 hypothetical protein K03009 RPABC4; DNA-directed RNA polymerases I, II, and III subunit RPABC4
E Cul4-CSA complex
F COCCADRAFT_95811 hypothetical protein K03868 RBX1; E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
F COCCADRAFT_6726 hypothetical protein K10609 CUL4; cullin 4
F COCCADRAFT_8611 hypothetical protein K10610 DDB1; DNA damage-binding protein 1
F COCCADRAFT_9345 hypothetical protein K10570 ERCC8; DNA excision repair protein ERCC-8
E Other TCR factor
F COCCADRAFT_102197 hypothetical protein K10841 ERCC6; DNA excision repair protein ERCC-6
F COCCADRAFT_22458 hypothetical protein K25829 ELOF1; transcription elongation factor 1
D TFIIH complex
E COCCADRAFT_27055 hypothetical protein K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
E COCCADRAFT_88395 hypothetical protein K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
E COCCADRAFT_38206 hypothetical protein K03141 TFIIH1; transcription initiation factor TFIIH subunit 1
E COCCADRAFT_37452 hypothetical protein K03142 TFIIH2; transcription initiation factor TFIIH subunit 2
E COCCADRAFT_33192 hypothetical protein K03143 TFIIH3; transcription initiation factor TFIIH subunit 3
E COCCADRAFT_10299 hypothetical protein K03144 TFIIH4; transcription initiation factor TFIIH subunit 4
E COCCADRAFT_40756 hypothetical protein K10845 TTDA; TFIIH basal transcription factor complex TTD-A subunit
E COCCADRAFT_28875 hypothetical protein K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23]
E COCCADRAFT_25862 hypothetical protein K06634 CCNH; cyclin H
E COCCADRAFT_39417 hypothetical protein K10842 MNAT1; CDK-activating kinase assembly factor MAT1
D RPA (replication factor A)
E COCCADRAFT_26351 hypothetical protein K07466 RFA1; replication factor A1
E COCCADRAFT_37203 hypothetical protein K10739 RFA2; replication factor A2
E COCCADRAFT_97056 hypothetical protein K10740 RPA3; replication factor A3
D Other NER factors
E COCCADRAFT_32750 hypothetical protein K10847 XPA; DNA-repair protein complementing XP-A cells
E COCCADRAFT_1540 hypothetical protein K10849 ERCC1; DNA excision repair protein ERCC-1
E COCCADRAFT_39284 hypothetical protein K10848 ERCC4; DNA excision repair protein ERCC-4 [EC:3.1.-.-]
E COCCADRAFT_28555 hypothetical protein K10846 ERCC5; DNA excision repair protein ERCC-5
E COCCADRAFT_36267 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E COCCADRAFT_5384 hypothetical protein K15075 MET18; DNA repair/transcription protein MET18/MMS19
E COCCADRAFT_5157 hypothetical protein K03869 CUL3; cullin 3
E COCCADRAFT_33194 hypothetical protein K03872 ELOC; elongin-C
E COCCADRAFT_22535 hypothetical protein K15077 ELA1; elongin-A
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
E COCCADRAFT_83306 hypothetical protein K08735 MSH2; DNA mismatch repair protein MSH2
E COCCADRAFT_87085 hypothetical protein K08736 MSH3; DNA mismatch repair protein MSH3
E COCCADRAFT_94113 hypothetical protein K08737 MSH6; DNA mismatch repair protein MSH6
D MutL homologs
E COCCADRAFT_8613 hypothetical protein K08734 MLH1; DNA mismatch repair protein MLH1
E COCCADRAFT_34139 hypothetical protein K10858 PMS2; DNA mismatch repair protein PMS2
E COCCADRAFT_37355 hypothetical protein K08739 MLH3; DNA mismatch repair protein MLH3
D DNA polymerase delta complex
E COCCADRAFT_36950 hypothetical protein K02328 POLD2; DNA polymerase delta subunit 2
E COCCADRAFT_32667 hypothetical protein K03504 POLD3; DNA polymerase delta subunit 3
E COCCADRAFT_93044 hypothetical protein K03505 POLD4; DNA polymerase delta subunit 4
D RPA (replication factor A)
E COCCADRAFT_26351 hypothetical protein K07466 RFA1; replication factor A1
E COCCADRAFT_37203 hypothetical protein K10739 RFA2; replication factor A2
E COCCADRAFT_97056 hypothetical protein K10740 RPA3; replication factor A3
D RFC (replication factor C)
E COCCADRAFT_103809 hypothetical protein K10754 RFC1; replication factor C subunit 1
E COCCADRAFT_96026 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
E COCCADRAFT_94780 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
E COCCADRAFT_40649 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D Other MMR factors
E COCCADRAFT_41633 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
E COCCADRAFT_26966 hypothetical protein K10746 EXO1; exonuclease 1 [EC:3.1.-.-]
E COCCADRAFT_36267 hypothetical protein K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
E COCCADRAFT_21570 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
E COCCADRAFT_96096 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E COCCADRAFT_4982 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
E COCCADRAFT_96096 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E COCCADRAFT_4982 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D BRCA complex
D RecA family proteins
D Rad52 family proteins
E COCCADRAFT_40831 hypothetical protein K10873 RAD52; DNA repair and recombination protein RAD52
D Rad54 family proteins
E COCCADRAFT_29544 hypothetical protein K10875 RAD54L; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
E COCCADRAFT_84792 hypothetical protein K10877 RAD54B; DNA repair and recombination protein RAD54B [EC:5.6.2.-]
D RecQ family DNA helicases
E COCCADRAFT_91164 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
D Bloom's syndrome complex (BTR)
E COCCADRAFT_91164 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E COCCADRAFT_97731 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E COCCADRAFT_35212 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D RPA (replication factor A)
E COCCADRAFT_26351 hypothetical protein K07466 RFA1; replication factor A1
E COCCADRAFT_37203 hypothetical protein K10739 RFA2; replication factor A2
E COCCADRAFT_97056 hypothetical protein K10740 RPA3; replication factor A3
D Protein phosphatase 4
E COCCADRAFT_33470 hypothetical protein K17491 SMEK; protein phosphatase 4 regulatory subunit 3
D AP-5 complex
D SMC5-SMC6 complex
E COCCADRAFT_9264 hypothetical protein K22803 SMC5; structural maintenance of chromosomes protein 5
E COCCADRAFT_24776 hypothetical protein K22804 SMC6; structural maintenance of chromosomes protein 6
E COCCADRAFT_8151 hypothetical protein K22817 NSMCE1; non-structural maintenance of chromosomes element 1 [EC:2.3.2.27]
E COCCADRAFT_93796 hypothetical protein K22756 NSMCE2; E3 SUMO-protein ligase NSE2 [EC:2.3.2.-]
E COCCADRAFT_28469 hypothetical protein K22825 NSMCE4; non-structural maintenance of chromosomes element 4
D Other HR factors
E COCCADRAFT_33177 hypothetical protein K10881 SHFM1; 26 proteasome complex subunit DSS1
E COCCADRAFT_7928 hypothetical protein K10992 SFR1; Swi5-dependent recombination DNA repair protein 1
E COCCADRAFT_5843 hypothetical protein K15078 SLX1; structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
E COCCADRAFT_39193 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E COCCADRAFT_6637 hypothetical protein K15338 GEN1; holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
E COCCADRAFT_39298 hypothetical protein K11339 MORF4L1; mortality factor 4-like protein 1
E COCCADRAFT_91419 hypothetical protein K22766 FIGNL1; fidgetin-like protein 1 [EC:5.6.2.-]
E COCCADRAFT_107589 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E COCCADRAFT_7223 hypothetical protein K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]
E COCCADRAFT_87631 hypothetical protein K14635 MPH1; ATP-dependent DNA helicase MPH1 [EC:5.6.2.4]
C NHEJ (non-homologous end-joining)
D DNA-PK complex
E COCCADRAFT_90040 hypothetical protein K10884 XRCC6; ATP-dependent DNA helicase 2 subunit 1
E COCCADRAFT_3233 hypothetical protein K10885 XRCC5; ATP-dependent DNA helicase 2 subunit 2
D MRX complex
E COCCADRAFT_96096 hypothetical protein K10865 MRE11; double-strand break repair protein MRE11
E COCCADRAFT_4982 hypothetical protein K10866 RAD50; DNA repair protein RAD50 [EC:3.6.-.-]
D DNA Ligase 4 complex
E COCCADRAFT_3251 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
E COCCADRAFT_86870 hypothetical protein K10777 LIG4; DNA ligase 4 [EC:6.5.1.1]
D X-family DNA polymerases
E COCCADRAFT_8760 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
E COCCADRAFT_893 hypothetical protein K10981 POL4; DNA polymerase IV [EC:2.7.7.7]
D Other NHEJ factors
E COCCADRAFT_6096 hypothetical protein K10863 APTX; aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
E COCCADRAFT_105687 hypothetical protein K19619 TDP2; tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
E COCCADRAFT_110698 hypothetical protein K11511 APITD1; centromere protein S
D Bloom's syndrome complex (BTR)
E COCCADRAFT_91164 hypothetical protein K10901 BLM; bloom syndrome protein [EC:5.6.2.4]
E COCCADRAFT_97731 hypothetical protein K03165 TOP3; DNA topoisomerase III [EC:5.6.2.1]
E COCCADRAFT_35212 hypothetical protein K15364 NCE4; RecQ-mediated genome instability protein 1
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
E COCCADRAFT_98842 hypothetical protein K15363 FAN1; fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
E COCCADRAFT_34551 hypothetical protein K11137 TELO2; telomere length regulation protein
E COCCADRAFT_84955 hypothetical protein K15361 WDR48; WD repeat-containing protein 48
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
E COCCADRAFT_22763 hypothetical protein K23314 WRAP53; telomerase Cajal body protein 1
E COCCADRAFT_1116 hypothetical protein K24752 WDR70; WD repeat-containing protein 70
E COCCADRAFT_21570 hypothetical protein K24755 WDR76; WD repeat-containing protein 76
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D COCCADRAFT_9596 hypothetical protein K03509 POLH; DNA polymerase eta [EC:2.7.7.7]
D COCCADRAFT_103824 hypothetical protein K03510 POLI; DNA polymerase iota [EC:2.7.7.7]
D COCCADRAFT_35462 hypothetical protein K03511 POLK; DNA polymerase kappa [EC:2.7.7.7]
D COCCADRAFT_23826 hypothetical protein K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-]
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
D COCCADRAFT_33912 hypothetical protein K10573 UBE2A; ubiquitin-conjugating enzyme E2 A [EC:2.3.2.23]
D COCCADRAFT_3382 hypothetical protein K10627 RAD18; E3 ubiquitin-protein ligase RAD18 [EC:2.3.2.27]
D COCCADRAFT_90635 hypothetical protein K15505 RAD5; DNA repair protein RAD5 [EC:5.6.2.-]
D COCCADRAFT_92479 hypothetical protein K15711 SMARCA3; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
D COCCADRAFT_32039 hypothetical protein K10580 UBE2N; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23]
C Other TLS factors
D COCCADRAFT_41633 hypothetical protein K04802 PCNA; proliferating cell nuclear antigen
D COCCADRAFT_7237 hypothetical protein K26957 GCNA; germ cell nuclear acidic protein
B Check point factors
C Rad9-Hus1-Rad1 complex
D COCCADRAFT_86472 hypothetical protein K10994 RAD9A; cell cycle checkpoint control protein RAD9A [EC:3.1.11.2]
D COCCADRAFT_98230 hypothetical protein K10903 HUS1; HUS1 checkpoint protein
D COCCADRAFT_6591 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C HRAD17(Rad24)-RFC complex
D COCCADRAFT_2904 hypothetical protein K06662 HRAD17; cell cycle checkpoint protein
D COCCADRAFT_96026 hypothetical protein K10755 RFC2_4; replication factor C subunit 2/4
D COCCADRAFT_94780 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
D COCCADRAFT_40649 hypothetical protein K10756 RFC3_5; replication factor C subunit 3/5
C Rad17-Mec3-Ddc1 complex
D COCCADRAFT_6591 hypothetical protein K02830 HRAD1; cell cycle checkpoint protein [EC:3.1.11.2]
C FPC (fork protection complex)
D COCCADRAFT_3613 hypothetical protein K10997 TIMELESS; replication fork protection complex subunit TIMELESS/Tof1/Swi1
D COCCADRAFT_1350 hypothetical protein K10998 TIPIN; replication fork protection complex subunit TIPIN/Csm3/Swi3
D COCCADRAFT_1599 hypothetical protein K11272 MRC1; mediator of replication checkpoint protein 1
C Triple T complex
D COCCADRAFT_34551 hypothetical protein K11137 TELO2; telomere length regulation protein
D COCCADRAFT_24307 hypothetical protein K20403 TTI1; TELO2-interacting protein 1
C BAG6-UBL4A-GET4 complex
D COCCADRAFT_9371 hypothetical protein K23388 UBL4; ubiquitin-like protein 4
D COCCADRAFT_40494 hypothetical protein K23387 GET4; golgi to ER traffic protein 4
C Other check point factors
D COCCADRAFT_23277 hypothetical protein K06640 ATR; serine/threonine-protein kinase ATR [EC:2.7.11.1]
D COCCADRAFT_8175 hypothetical protein K04728 ATM; serine-protein kinase ATM [EC:2.7.11.1]
D COCCADRAFT_4193 hypothetical protein K02216 CHEK1; serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
D COCCADRAFT_37277 hypothetical protein K06641 CHEK2; serine/threonine-protein kinase CHEK2 [EC:2.7.11.1]
D COCCADRAFT_7734 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D COCCADRAFT_35802 hypothetical protein K06630 YWHAE; 14-3-3 protein epsilon
D COCCADRAFT_1850 hypothetical protein K03114 SWE1; mitosis inhibitor protein kinase SWE1 [EC:2.7.11.1]
D COCCADRAFT_25992 hypothetical protein K24664 FKH; forkhead protein FKH
D COCCADRAFT_35189 hypothetical protein K12196 VPS4; vacuolar protein-sorting-associated protein 4
D COCCADRAFT_35621 hypothetical protein K25059 SDE2; replication stress response regulator SDE2
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
D COCCADRAFT_25559 hypothetical protein K15340 DCLRE1A; DNA cross-link repair 1A protein
D COCCADRAFT_106769 hypothetical protein K17815 EXO5; exonuclease V [EC:3.1.-.-]
D COCCADRAFT_38536 hypothetical protein K05986 NUCS; nuclease S1 [EC:3.1.30.1]
C Helicases
D COCCADRAFT_39018 hypothetical protein K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2 [EC:5.6.2.-]
C PSO4 complex
D COCCADRAFT_109016 hypothetical protein K10599 PRPF19; pre-mRNA-processing factor 19 [EC:2.3.2.27]
D COCCADRAFT_106807 hypothetical protein K12860 CDC5L; pre-mRNA-splicing factor CDC5/CEF1
D COCCADRAFT_88725 hypothetical protein K12861 BCAS2; pre-mRNA-splicing factor SPF27
D COCCADRAFT_28732 hypothetical protein K12862 PLRG1; pleiotropic regulator 1
C Modulation of nucleotide pools
D COCCADRAFT_87863 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D COCCADRAFT_9767 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D COCCADRAFT_26803 hypothetical protein K10807 RRM1; ribonucleoside-diphosphate reductase subunit M1 [EC:1.17.4.1]
D COCCADRAFT_106699 hypothetical protein K10808 RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D COCCADRAFT_39488 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D COCCADRAFT_27645 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D COCCADRAFT_103138 hypothetical protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E COCCADRAFT_103025 hypothetical protein K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E COCCADRAFT_36593 hypothetical protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
E COCCADRAFT_38353 hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E COCCADRAFT_7568 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E COCCADRAFT_96578 hypothetical protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D RecJ
D DNA ligase
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E COCCADRAFT_39497 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
E TRCF (transcription-repair coupling factor)
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
D DNA polymerase III holoenzyme
D DNA ligase
D Other MMR factors
E COCCADRAFT_39497 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
D RecFOR pathway proteins
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
E Facilitator
E Supressor
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C Other SOS response factors
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
C Modulation of nucleotide pools
D COCCADRAFT_87863 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D COCCADRAFT_9767 hypothetical protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
C Others
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024