+D GENES KO
#
KEGG Orthology (KO) - Candidatus Cloacimonas acidaminovorans
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:caci00010]
D CLOAM1376 putative Glucokinase (Glucose kinase) (glcK-like) K25026 glk; glucokinase [EC:2.7.1.2]
D CLOAM1751 pgi; Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLOAM0626 pfk; 6-phosphofructokinase (ATP-dependent phosphofructokinase) (ATP-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CLOAM1211 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-dependent phosphofructokinase) (PPi-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CLOAM1837 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLOAM1668 tpiA; Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLOAM1530 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLOAM1840 gapA; Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLOAM0802 pgk; 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CLOAM0341 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CLOAM1651 eno; enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLOAM0519 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLOAM1531 putative Pyruvate phosphate dikinase,PEP/pyruvate-binding:PEP-utilising enzyme, mobile region K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0324 putative pyruvate-ferredoxin oxidoreductase (por-like) or pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S domain K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLOAM0297 korA; 2-oxoglutarate ferredoxin oxidoreductase, alpha chain K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM1002 vorA; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM0296 korB; 2-oxoglutarate ferredoxin oxidoreductase, beta chain K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM1003 vorB; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM0516 cpsG; Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CLOAM1163 conserved hypothetical protein K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:caci00020]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0297 korA; 2-oxoglutarate ferredoxin oxidoreductase, alpha chain K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM1002 vorA; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM0296 korB; 2-oxoglutarate ferredoxin oxidoreductase, beta chain K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM1003 vorB; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM0295 korC; 2-oxoglutarate ferredoxin oxidoreductase, gamma chain K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CLOAM1004 vorC; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CLOAM0298 putative 2-oxoglutarate ferredoxin oxidoreductase, 4Fe-4S ferredoxin subunit, delta chain (korD) (fdx module) K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CLOAM1001 vorD; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit (ferredoxin) K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CLOAM0022 Tartrate dehydratase alpha subunit (ttdA)/Fumarate hydratase class I,alpha chain (N-terminal) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CLOAM0023 tartrate dehydratase beta subunit (ttdB)/fumarate hydratase class I, beta chain (C-terminal) K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CLOAM1717 putative S-methylmalonyl-CoA carboxyltransferase (Transcarboxylase) 5S and 1.3S subunits K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CLOAM1163 conserved hypothetical protein K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CLOAM0324 putative pyruvate-ferredoxin oxidoreductase (por-like) or pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S domain K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:caci00030]
D CLOAM1751 pgi; Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLOAM1603 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CLOAM1259 putative Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLOAM0751 rpiB; ribose 5-phosphate isomerase B, also acts as allose 6-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CLOAM1243 deoC; Deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D CLOAM0516 cpsG; Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CLOAM1613 prsA; ribose-phosphate pyrophosphokinase (RPPK) (phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CLOAM0709 aorA; Tungsten-containing aldehyde ferredoxin oxidoreductase, alpha chain K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D CLOAM0705 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CLOAM1837 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLOAM0626 pfk; 6-phosphofructokinase (ATP-dependent phosphofructokinase) (ATP-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CLOAM1211 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-dependent phosphofructokinase) (PPi-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:caci00040]
D CLOAM1468 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CLOAM1098 putative glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLOAM1603 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CLOAM1199 putative Sugar-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
C 00051 Fructose and mannose metabolism [PATH:caci00051]
D CLOAM1580 putative mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLOAM1012 Phosphoglucomutase/phosphomannomutase family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D CLOAM0516 cpsG; Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CLOAM0349 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase,truncation K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CLOAM1199 putative Sugar-phosphate aldolase K01629 rhaD; rhamnulose-1-phosphate aldolase [EC:4.1.2.19]
D CLOAM0626 pfk; 6-phosphofructokinase (ATP-dependent phosphofructokinase) (ATP-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CLOAM1211 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-dependent phosphofructokinase) (PPi-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CLOAM0663 GDP-mannose 6-dehydrogenase (GMD) K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D CLOAM1837 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLOAM1668 tpiA; Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLOAM0751 rpiB; ribose 5-phosphate isomerase B, also acts as allose 6-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:caci00052]
D CLOAM0101 Nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLOAM1469 galE; UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLOAM1098 putative glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLOAM0516 cpsG; Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CLOAM1376 putative Glucokinase (Glucose kinase) (glcK-like) K25026 glk; glucokinase [EC:2.7.1.2]
D CLOAM0626 pfk; 6-phosphofructokinase (ATP-dependent phosphofructokinase) (ATP-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CLOAM1211 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-dependent phosphofructokinase) (PPi-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00053 Ascorbate and aldarate metabolism
D CLOAM1468 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:caci00500]
D CLOAM1098 putative glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLOAM0642 Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CLOAM0878 putative 4-alpha-glucanotransferase K16150 K16150; glycogen synthase [EC:2.4.1.11]
D CLOAM0378 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D CLOAM1831 glgP; glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D CLOAM0877 putative alpha-amylase K07405 E3.2.1.1A; alpha-amylase [EC:3.2.1.1]
D CLOAM0972 putative Cyclomaltodextrinase K01208 cd; cyclomaltodextrinase / maltogenic alpha-amylase / neopullulanase [EC:3.2.1.54 3.2.1.133 3.2.1.135]
D CLOAM1039 putative 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D CLOAM0516 cpsG; Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CLOAM1376 putative Glucokinase (Glucose kinase) (glcK-like) K25026 glk; glucokinase [EC:2.7.1.2]
D CLOAM1751 pgi; Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:caci00520]
D CLOAM0957 glmS; glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-phosphate synthase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLOAM1490 putative glutamine-fructose-6-phosphate transaminase [isomerizing] (glucosamine--fructose-6-phosphate aminotransferase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLOAM0363 Bifunctional glmU protein [Includes: UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase] (partial, glmU fragment) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CLOAM1615 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLOAM1544 murB; UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLOAM0675 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CLOAM1565 mviM; predicted dehydrogenase and related proteins K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D CLOAM1218 wecB; UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
D CLOAM0691 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) (GalE-like) K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
D CLOAM1376 putative Glucokinase (Glucose kinase) (glcK-like) K25026 glk; glucokinase [EC:2.7.1.2]
D CLOAM0516 cpsG; Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CLOAM1098 putative glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLOAM1468 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CLOAM0101 Nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLOAM1469 galE; UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLOAM1751 pgi; Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLOAM1580 putative mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLOAM1012 Phosphoglucomutase/phosphomannomutase family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D CLOAM0349 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase,truncation K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CLOAM0659 DegT/DnrJ/EryC1/StrS family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
D CLOAM0663 GDP-mannose 6-dehydrogenase (GMD) K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D CLOAM0642 Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CLOAM0643 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D CLOAM0645 Lipopolysaccharide biosynthesis protein rfbH K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
C 00620 Pyruvate metabolism [PATH:caci00620]
D CLOAM0324 putative pyruvate-ferredoxin oxidoreductase (por-like) or pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S domain K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLOAM0297 korA; 2-oxoglutarate ferredoxin oxidoreductase, alpha chain K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM1002 vorA; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM0296 korB; 2-oxoglutarate ferredoxin oxidoreductase, beta chain K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM1003 vorB; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0181 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLOAM0615 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLOAM0741 putative acylphosphatase (Acylphosphate phosphohydrolase) K01512 acyP; acylphosphatase [EC:3.6.1.7]
D CLOAM0897 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CLOAM1714 mae; NAD-dependent malic enzyme (NAD-ME) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CLOAM1513 putative Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D CLOAM1771 putative S-Methylmalonyl-CoA decarboxylase,sodium-translocating subunit, beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D CLOAM1717 putative S-methylmalonyl-CoA carboxyltransferase (Transcarboxylase) 5S and 1.3S subunits K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CLOAM0022 Tartrate dehydratase alpha subunit (ttdA)/Fumarate hydratase class I,alpha chain (N-terminal) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CLOAM0023 tartrate dehydratase beta subunit (ttdB)/fumarate hydratase class I, beta chain (C-terminal) K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CLOAM1163 conserved hypothetical protein K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CLOAM0519 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLOAM1531 putative Pyruvate phosphate dikinase,PEP/pyruvate-binding:PEP-utilising enzyme, mobile region K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:caci00630]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLOAM0294 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D CLOAM0803 mutA; Methylmalonyl-CoA mutase small subunit (MCM-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CLOAM0804 mutB; Methylmalonyl-CoA mutase large subunit (MCM-alpha) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CLOAM1413 gyaR; glyoxylate reductase (glycolate:NAD+ oxidoreductase) K00015 gyaR; glyoxylate reductase [EC:1.1.1.26]
D CLOAM0962 putative Phosphoglycolate phosphatase (PGPase) (PGP) K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CLOAM1216 putative Phosphoglycolate phosphatase (PGPase) (PGP) K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CLOAM0630 glnA; glutamine synthetase (glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLOAM0752 glyA; serine hydroxymethyltransferase (serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLOAM1385 gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLOAM1384 gcvPB; glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLOAM1023 gcvT; aminomethyltransferase (Glycine cleavage system T protein) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0290 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CLOAM0705 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CLOAM1684 putative bifunctional glutamate synthase [NADPH] small chain / formate dehydrogenase large chain (Glutamate synthase beta subunit / formate dehydrogenase alpha subunit) K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
C 00640 Propanoate metabolism [PATH:caci00640]
D CLOAM0181 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLOAM0615 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0294 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D CLOAM0803 mutA; Methylmalonyl-CoA mutase small subunit (MCM-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CLOAM0804 mutB; Methylmalonyl-CoA mutase large subunit (MCM-alpha) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
C 00650 Butanoate metabolism [PATH:caci00650]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLOAM0042 atoD; Acetoacetate:butyrate CoA-transferase alpha subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLOAM0043 atoA; Acetoacetate:butyrate CoA-transferase beta subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D CLOAM0397 butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D CLOAM0749 pta; Phosphotransacetylase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D CLOAM1513 putative Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D CLOAM1771 putative S-Methylmalonyl-CoA decarboxylase,sodium-translocating subunit, beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D CLOAM0324 putative pyruvate-ferredoxin oxidoreductase (por-like) or pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S domain K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLOAM0297 korA; 2-oxoglutarate ferredoxin oxidoreductase, alpha chain K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM1002 vorA; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM0296 korB; 2-oxoglutarate ferredoxin oxidoreductase, beta chain K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM1003 vorB; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
C 00660 C5-Branched dibasic acid metabolism
C 00562 Inositol phosphate metabolism [PATH:caci00562]
D CLOAM0423 ino1; Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D CLOAM0421 conserved hypothetical protein K07281 ipct; 1L-myo-inositol 1-phosphate cytidylyltransferase [EC:2.7.7.74]
D CLOAM1668 tpiA; Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:caci00190]
D CLOAM1182 putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D CLOAM1686 [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit gamma (hymA-like) K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D CLOAM1685 [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase); putative signal peptide K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CLOAM1180 hymC; [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit alpha K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D CLOAM1052 V-type ATP synthase alpha chain 1 (V-type ATPase subunit A 1) K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D CLOAM1053 V-type ATP synthase beta chain 1 (V-type ATPase subunit B 1) K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D CLOAM1054 V-type ATP synthase subunit D K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D CLOAM1050 putative V-type ATPase, subunit E K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D CLOAM1055 putative V(Vacuolar)-type Na+ ATP synthase subunit I K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D CLOAM1056 putative V(Vacuolar)-type Na+-ATP synthase subunit K K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:caci00710]
D CLOAM0802 pgk; 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CLOAM1530 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLOAM1840 gapA; Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLOAM1837 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLOAM1259 putative Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLOAM0751 rpiB; ribose 5-phosphate isomerase B, also acts as allose 6-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CLOAM1668 tpiA; Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLOAM1603 rpe; D-ribulose-5-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CLOAM1163 conserved hypothetical protein K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CLOAM0519 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLOAM1531 putative Pyruvate phosphate dikinase,PEP/pyruvate-binding:PEP-utilising enzyme, mobile region K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00720 Other carbon fixation pathways [PATH:caci00720]
D CLOAM0324 putative pyruvate-ferredoxin oxidoreductase (por-like) or pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S domain K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLOAM0519 ppdK; pyruvate phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLOAM1531 putative Pyruvate phosphate dikinase,PEP/pyruvate-binding:PEP-utilising enzyme, mobile region K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLOAM1717 putative S-methylmalonyl-CoA carboxyltransferase (Transcarboxylase) 5S and 1.3S subunits K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CLOAM0022 Tartrate dehydratase alpha subunit (ttdA)/Fumarate hydratase class I,alpha chain (N-terminal) K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CLOAM0023 tartrate dehydratase beta subunit (ttdB)/fumarate hydratase class I, beta chain (C-terminal) K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLOAM0297 korA; 2-oxoglutarate ferredoxin oxidoreductase, alpha chain K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM1002 vorA; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLOAM0296 korB; 2-oxoglutarate ferredoxin oxidoreductase, beta chain K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM1003 vorB; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLOAM0295 korC; 2-oxoglutarate ferredoxin oxidoreductase, gamma chain K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CLOAM1004 vorC; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CLOAM0298 putative 2-oxoglutarate ferredoxin oxidoreductase, 4Fe-4S ferredoxin subunit, delta chain (korD) (fdx module) K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CLOAM1001 vorD; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit (ferredoxin) K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CLOAM0294 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D CLOAM0803 mutA; Methylmalonyl-CoA mutase small subunit (MCM-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CLOAM0804 mutB; Methylmalonyl-CoA mutase large subunit (MCM-alpha) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CLOAM0539 folD; FolD bifunctional protein [Includes: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase] K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CLOAM0615 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLOAM0181 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:caci00680]
D CLOAM1684 putative bifunctional glutamate synthase [NADPH] small chain / formate dehydrogenase large chain (Glutamate synthase beta subunit / formate dehydrogenase alpha subunit) K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CLOAM0752 glyA; serine hydroxymethyltransferase (serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLOAM0705 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CLOAM1651 eno; enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLOAM1837 fbaA; fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLOAM0626 pfk; 6-phosphofructokinase (ATP-dependent phosphofructokinase) (ATP-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CLOAM1211 pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-dependent phosphofructokinase) (PPi-PFK) K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CLOAM0181 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLOAM0615 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLOAM0341 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CLOAM1772 serA; D-3-phosphoglycerate dehydrogenase (PGDH) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLOAM0992 serC; phosphoserine aminotransferase (PSAT) (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CLOAM1159 mdh; Malate dehydrogenase K05884 comC; L-2-hydroxycarboxylate dehydrogenase (NAD+) [EC:1.1.1.337]
C 00910 Nitrogen metabolism [PATH:caci00910]
D CLOAM0445 hcp; Hydroxylamine reductase (Hybrid-cluster protein) (HCP) K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D CLOAM1212 gdhB; NAD-specific glutamate dehydrogenase (NAD-GDH) (NADH-dependent glutamate dehydrogenase) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CLOAM0630 glnA; glutamine synthetase (glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLOAM0886 cpkA; carbamate kinase (carbamate kinase-like) (carbamate kinase-like carbamoylphosphate synthetase) K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00920 Sulfur metabolism [PATH:caci00920]
D CLOAM0268 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D CLOAM0983 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:caci00061]
D CLOAM0680 putative acyl carrier protein (acpP-like) K02078 acpP; acyl carrier protein
D CLOAM0252 acpP; Acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
D CLOAM0254 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLOAM0689 beta-ketoacyl-acyl carrier protein synthase (fabH-like) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLOAM0255 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLOAM0251 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLOAM0682 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM0253 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM0690 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM1381 lpxC_fabZ; LpxC/fabZ bifunctional enzyme [Includes: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase); (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase)] K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:caci00071]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:caci00561]
D CLOAM0705 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CLOAM0256 plsX; fatty acid/phospholipid synthesis protein,methyltransferase domain K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CLOAM0370 conserved hypothetical protein; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CLOAM0162 hypothetical protein; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CLOAM1445 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT) (plsC) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 00564 Glycerophospholipid metabolism [PATH:caci00564]
D CLOAM0870 gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CLOAM0370 conserved hypothetical protein; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CLOAM0162 hypothetical protein; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CLOAM1445 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT) (plsC) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLOAM1573 cdsA; Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CLOAM0330 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (Phosphatidylglycerophosphate synthase) (PGP synthase) K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CLOAM0005 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
D CLOAM0597 cls; cardiolipin synthetase 2 (Cardiolipin synthase 2) (CL synthase 2) K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:caci00230]
D CLOAM0516 cpsG; Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CLOAM1613 prsA; ribose-phosphate pyrophosphokinase (RPPK) (phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CLOAM0369 purF; amidophosphoribosyltransferase precursor (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLOAM0428 purD; phosphoribosylamine--glycine ligase (GARS) (glycinamide ribonucleotide synthetase) (phosphoribosylglycinamide synthetase) K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CLOAM1541 purN; phosphoribosylglycinamide formyltransferase (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CLOAM1016 purL; phosphoribosylformylglycinamidine synthase II (FGAM synthase II) (formylglycinamide ribonucleotide amidotransferase) (small PurL), ATP and FGAR binding domain K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D CLOAM0594 purS; phosphoribosylformylglycinamidine synthase III (FGAM synthase III) (formylglycinamide ribonucleotide amidotransferase), PurS component K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D CLOAM0593 purQ; phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (formylglycinamide ribonucleotide amidotransferase), glutaminase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CLOAM0611 purM; phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (phosphoribosyl-aminoimidazole synthetase) (AIR synthase) K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CLOAM0342 purE; phosphoribosylaminoimidazole carboxylase catalytic subunit (AIR carboxylase) (AIRC) K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CLOAM0764 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase) K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CLOAM0107 purB; adenylosuccinate lyase (adenylosuccinase) (ASL) (glutamyl-tRNA synthetase regulatory factor) K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CLOAM1899 purH; Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLOAM0524 putative 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CLOAM1796 putative 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CLOAM1168 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLOAM0405 Purine nucleoside phosphorylase 1 (Purine nucleoside phosphorylase I) (PNP I) (PU-NPase I) (Inosine phosphorylase) K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CLOAM1647 yaiE; conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CLOAM0827 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CLOAM0832 hpt; Hypoxanthine-guanine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D CLOAM1588 guaB; Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) (Superoxide-inducible protein 12) (SOI12) K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CLOAM0822 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CLOAM0517 Xanthosine triphosphate pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CLOAM1779 xdhA; xanthine dehydrogenase, FAD binding and 2Fe-2S ferredoxin-like subunits, medium and small chains K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4]
D CLOAM1780 xdhB; xanthine dehydrogenase, molybdenum binding subunit, large chain K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4]
D CLOAM0898 guaA; GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase) (GMP synthetase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CLOAM0436 putative guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D CLOAM0289 gmk; Guanylate kinase (GMP kinase) K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CLOAM0913 putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLOAM1253 nrdD; Anaerobic ribonucleoside-triphosphate reductase (Oxygen-sensitive ribonucleoside-triphosphate reductase) K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CLOAM1621 DGTP triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D CLOAM0753 putative Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CLOAM1151 putative Adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D CLOAM1343 putative Adenylate cyclase K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D CLOAM1850 purA; Adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS) (AMPSase) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CLOAM0847 putative Adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D CLOAM1703 putative adenosine deaminase 2 (Adenosine aminohydrolase 2) K01488 add; adenosine deaminase [EC:3.5.4.4]
D CLOAM0538 Ser/Thr protein phosphatase family protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D CLOAM1458 adk; Adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D CLOAM0362 HIT family protein K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D CLOAM0886 cpkA; carbamate kinase (carbamate kinase-like) (carbamate kinase-like carbamoylphosphate synthetase) K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:caci00240]
D CLOAM1784 Similar to Biotin carboxylase K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLOAM1311 pyrB; aspartate carbamoyltransferase (aspartate transcarbamylase) (ATCase) K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CLOAM1310 pyrC; dihydroorotase (DHOase) K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CLOAM1308 pyrD; dihydroorotate dehydrogenase, catalytic subunit (Dihydroorotate oxidase) (DHOdehase) (DHODase) (DHOD) K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D CLOAM1309 pyrK; dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D CLOAM1005 fused protein: Orotate phosphoribosyltransferase (pyrE-like) (C_terminal); unknown domain (N-terminal) K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CLOAM1720 pyrF; orotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase) K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CLOAM1888 pyrH; uridylate kinase (UK) (uridine monophosphate kinase) (UMP kinase) K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CLOAM0822 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CLOAM0993 maf; maf protein K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CLOAM0808 pyrG; CTP synthase (UTP--ammonia ligase) (CTP synthetase) K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CLOAM0819 Uridine kinase (Uridine monophosphokinase) (Cytidine monophosphokinase) K00876 udk; uridine kinase [EC:2.7.1.48]
D CLOAM1303 udk; Uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D CLOAM0524 putative 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CLOAM1796 putative 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CLOAM1168 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLOAM1647 yaiE; conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CLOAM1719 pyrR; Bifunctional protein : Pyrimidine operon regulatory protein; Uracil phosphoribosyltransferase (UPRTase) K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLOAM0538 Ser/Thr protein phosphatase family protein K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D CLOAM0999 indA; uncharacterized enzyme involved in pigment biosynthesis K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D CLOAM1645 deoA; Thymidine phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D CLOAM1514 cdd; Cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D CLOAM1253 nrdD; Anaerobic ribonucleoside-triphosphate reductase (Oxygen-sensitive ribonucleoside-triphosphate reductase) K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CLOAM0913 putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLOAM1358 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D CLOAM0356 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CLOAM0327 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CLOAM0402 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D CLOAM1631 putative dihydropyrimidine dehydrogenase [NADP+] (DPD) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) (pydA) K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:caci00250]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM0357 putative NADH-dependent fumarate reductase (frd) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CLOAM0923 ansB; L-asparaginase (L-asparagine amidohydrolase) (L-ASNase) K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CLOAM0669 putative Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CLOAM1585 asnB; asparagine synthetase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CLOAM1850 purA; Adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS) (AMPSase) K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CLOAM0107 purB; adenylosuccinate lyase (adenylosuccinase) (ASL) (glutamyl-tRNA synthetase regulatory factor) K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CLOAM1311 pyrB; aspartate carbamoyltransferase (aspartate transcarbamylase) (ATCase) K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CLOAM1212 gdhB; NAD-specific glutamate dehydrogenase (NAD-GDH) (NADH-dependent glutamate dehydrogenase) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CLOAM1154 rocA; Delta-1-pyrroline-5-carboxylate dehydrogenase (P5C dehydrogenase) K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D CLOAM0630 glnA; glutamine synthetase (glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLOAM1784 Similar to Biotin carboxylase K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLOAM0593 purQ; phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (formylglycinamide ribonucleotide amidotransferase), glutaminase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CLOAM0957 glmS; glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-phosphate synthase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLOAM1490 putative glutamine-fructose-6-phosphate transaminase [isomerizing] (glucosamine--fructose-6-phosphate aminotransferase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLOAM0369 purF; amidophosphoribosyltransferase precursor (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:caci00260]
D CLOAM0441 lysC; Aspartokinase 2 (Aspartokinase II) (Aspartate kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLOAM0633 asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLOAM0719 putative threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CLOAM1665 Low-specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D CLOAM0752 glyA; serine hydroxymethyltransferase (serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLOAM0705 putative hydroxypyruvate reductase K11529 gck; glycerate 2-kinase [EC:2.7.1.165]
D CLOAM0341 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CLOAM1772 serA; D-3-phosphoglycerate dehydrogenase (PGDH) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLOAM0992 serC; phosphoserine aminotransferase (PSAT) (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CLOAM0960 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D CLOAM1385 gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLOAM1384 gcvPB; glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLOAM1023 gcvT; aminomethyltransferase (Glycine cleavage system T protein) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0290 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00270 Cysteine and methionine metabolism [PATH:caci00270]
D CLOAM0983 Pyridoxal-5'-phosphate-dependent enzyme, beta subunit K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLOAM1025 class-II pyridoxal-phosphate-dependent aminotransferase (malY/patB-like) K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLOAM1766 metK; S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (MAT) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CLOAM0827 conserved hypothetical protein K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CLOAM1777 ssnA; Cytosine deaminase and related metal-dependent hydrolase K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D CLOAM1776 putative translation initiation factor, aIF-2BI family K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D CLOAM1471 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D CLOAM0441 lysC; Aspartokinase 2 (Aspartokinase II) (Aspartate kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLOAM0633 asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1772 serA; D-3-phosphoglycerate dehydrogenase (PGDH) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLOAM0992 serC; phosphoserine aminotransferase (PSAT) (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:caci00280]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0294 mce; methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1]
D CLOAM0803 mutA; Methylmalonyl-CoA mutase small subunit (MCM-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CLOAM0804 mutB; Methylmalonyl-CoA mutase large subunit (MCM-alpha) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis
C 00300 Lysine biosynthesis [PATH:caci00300]
D CLOAM0441 lysC; Aspartokinase 2 (Aspartokinase II) (Aspartate kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLOAM0633 asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLOAM0032 dapA; dihydrodipicolinate synthase (DHDPS) K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CLOAM0281 dapB; dihydrodipicolinate reductase (DHPR) K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CLOAM1024 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (Tetrahydrodipicolinate N-succinyltransferase) (THP succinyltransferase) (Tetrahydropicolinate succinylase) K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CLOAM0282 dapF; diaminopimelate epimerase (DAP epimerase) K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CLOAM1785 lysA; diaminopimelate decarboxylase (DAP decarboxylase) K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CLOAM0632 putative Metal-dependent amidase/aminoacylase/carboxypeptidase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
D CLOAM0729 putative kynurenine/alpha-aminoadipate aminotransferase precursor (KAT/AadAT) (kynurenine--oxoglutarate transaminase II) (kynurenine aminotransferase II) (kynurenine--oxoglutarate aminotransferase II) (2-aminoadipate transaminase) (2-aminoadipate aminotransferase) (Alpha-aminoadipate aminotransferase) (AadAT) K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D CLOAM0299 putative alanine--glyoxylate aminotransferase (alanine--glyoxylate transaminase) (Agt) K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D CLOAM0786 putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match,murE/murF-like) K15792 murEF; MurE/MurF fusion protein [EC:6.3.2.13 6.3.2.10]
C 00310 Lysine degradation [PATH:caci00310]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLOAM1349 kamA; L-lysine 2,3-aminomutase (KAM) (LAM) K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2]
D CLOAM1504 kamD; L-beta-lysine 5,6-aminomutase alpha subunit K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3]
D CLOAM1503 kamE; L-beta-lysine 5,6-aminomutase beta subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3]
D CLOAM1348 kdd; 3,5-diaminohexanoate dehydrogenase K18012 kdd; L-erythro-3,5-diaminohexanoate dehydrogenase [EC:1.4.1.11]
D CLOAM0912 kce; 3-keto-5-aminohexanoate cleavage enzyme K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247]
D CLOAM0042 atoD; Acetoacetate:butyrate CoA-transferase alpha subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLOAM0043 atoA; Acetoacetate:butyrate CoA-transferase beta subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
C 00220 Arginine biosynthesis [PATH:caci00220]
D CLOAM0089 argI; Ornithine carbamoyltransferase (OTCase) K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CLOAM0593 purQ; phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (formylglycinamide ribonucleotide amidotransferase), glutaminase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CLOAM0630 glnA; glutamine synthetase (glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLOAM1784 Similar to Biotin carboxylase K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLOAM0886 cpkA; carbamate kinase (carbamate kinase-like) (carbamate kinase-like carbamoylphosphate synthetase) K00926 arcC; carbamate kinase [EC:2.7.2.2]
D CLOAM1212 gdhB; NAD-specific glutamate dehydrogenase (NAD-GDH) (NADH-dependent glutamate dehydrogenase) K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism [PATH:caci00330]
D CLOAM0769 Peptidylarginine deiminase precursor (modular protein) K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D CLOAM1160 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
D CLOAM0660 putative GCN5-related N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D CLOAM1147 putative ornithine/acetylornithine/succinyldiaminopimelate aminotransferase (ornithine/acetylornithine/succinyldiaminopimelate transaminase) (dapC-like) K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D CLOAM1154 rocA; Delta-1-pyrroline-5-carboxylate dehydrogenase (P5C dehydrogenase) K00294 E1.2.1.88; 1-pyrroline-5-carboxylate dehydrogenase [EC:1.2.1.88]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:caci00340]
D CLOAM0138 putative aromatic amino acid aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLOAM0919 putative Histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D CLOAM0511 hutH; histidine ammonia-lyase (Histidase) K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D CLOAM1099 hutU; urocanate hydratase (Urocanase) (Imidazolonepropionate hydrolase) K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D CLOAM0424 hutI; imidazolonepropionase (imidazolone-5-propionate hydrolase) K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D CLOAM0177 ftcd; Formimidoyltransferase-cyclodeaminase (Formiminotransferase-cyclodeaminase) (FTCD) [Includes: Glutamate formimidoyltransferase (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoyltetrahydrofolate cyclodeaminase (Formiminotetrahydrofolate cyclodeaminase)] K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4]
C 00350 Tyrosine metabolism [PATH:caci00350]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM0138 putative aromatic amino acid aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:caci00360]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM0138 putative aromatic amino acid aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00380 Tryptophan metabolism [PATH:caci00380]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:caci00400]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM0138 putative aromatic amino acid aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:caci00410]
D CLOAM1081 panD; Aspartate 1-decarboxylase precursor (Aspartate alpha-decarboxylase) K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CLOAM1082 panC; Pantoate--beta-alanine ligase (Pantothenate synthetase) (Pantoate activating enzyme) K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CLOAM1631 putative dihydropyrimidine dehydrogenase [NADP+] (DPD) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) (pydA) K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2]
C 00430 Taurine and hypotaurine metabolism [PATH:caci00430]
D CLOAM0615 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLOAM0181 ackA; acetate kinase A (propionate kinase 2) K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:caci00450]
D CLOAM1025 class-II pyridoxal-phosphate-dependent aminotransferase (malY/patB-like) K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLOAM1697 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CLOAM0440 Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:caci00460]
D CLOAM0923 ansB; L-asparaginase (L-asparagine amidohydrolase) (L-ASNase) K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CLOAM0752 glyA; serine hydroxymethyltransferase (serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:caci00470]
D CLOAM1339 ddlB; D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLOAM0593 purQ; phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (formylglycinamide ribonucleotide amidotransferase), glutaminase domain K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CLOAM0911 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CLOAM0784 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLOAM0282 dapF; diaminopimelate epimerase (DAP epimerase) K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CLOAM1785 lysA; diaminopimelate decarboxylase (DAP decarboxylase) K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CLOAM1504 kamD; L-beta-lysine 5,6-aminomutase alpha subunit K01844 kamD; beta-lysine 5,6-aminomutase alpha subunit [EC:5.4.3.3]
D CLOAM1503 kamE; L-beta-lysine 5,6-aminomutase beta subunit K18011 kamE; beta-lysine 5,6-aminomutase beta subunit [EC:5.4.3.3]
C 00480 Glutathione metabolism [PATH:caci00480]
D CLOAM0131 pepA; cytosol aminopeptidase (leucine aminopeptidase) (LAP) (leucyl aminopeptidase) (aminopeptidase A/I) K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CLOAM1160 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:caci00540]
D CLOAM1380 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CLOAM1381 lpxC_fabZ; LpxC/fabZ bifunctional enzyme [Includes: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase); (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase)] K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D CLOAM1382 lpxD; UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CLOAM1417 putative UDP-2,3-diacylglucosamine hydrolase (lpxH-like) K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CLOAM1069 putative lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CLOAM0762 putative tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CLOAM0743 carbohydrate isomerase, KpsF/GutQ family K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CLOAM1765 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CLOAM1764 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CLOAM1795 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CLOAM0901 putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CLOAM1049 putative Lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CLOAM1702 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CLOAM0368 Carbohydrate kinase, PfkB K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D CLOAM1177 gmbH; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CLOAM0367 Glycerol-3-phosphate cytidyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D CLOAM0418 putative ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CLOAM1569 hypothetical protein K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CLOAM1695 putative Glycosyl transferase, family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
C 00542 O-Antigen repeat unit biosynthesis [PATH:caci00542]
D CLOAM0554 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLOAM0636 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:caci00541]
D CLOAM1098 putative glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLOAM0101 Nucleoside-diphosphate-sugar epimerase (UDP-glucose 4-epimerase) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLOAM1469 galE; UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLOAM1468 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CLOAM0279 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLOAM0644 putative dTDP-6-deoxy-D-glucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CLOAM0642 Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CLOAM0643 CDP-glucose 4,6-dehydratase K01709 rfbG; CDP-glucose 4,6-dehydratase [EC:4.2.1.45]
D CLOAM0645 Lipopolysaccharide biosynthesis protein rfbH K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D CLOAM1580 putative mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLOAM1012 Phosphoglucomutase/phosphomannomutase family protein K01840 manB; phosphomannomutase [EC:5.4.2.8]
D CLOAM0349 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase,truncation K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CLOAM0659 DegT/DnrJ/EryC1/StrS family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
D CLOAM0363 Bifunctional glmU protein [Includes: UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase] (partial, glmU fragment) K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CLOAM0675 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CLOAM1565 mviM; predicted dehydrogenase and related proteins K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D CLOAM1218 wecB; UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
D CLOAM0691 UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) (GalE-like) K02473 wbpP; UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine 4-epimerase [EC:5.1.3.7 5.1.3.-]
C 00550 Peptidoglycan biosynthesis [PATH:caci00550]
D CLOAM1615 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLOAM1544 murB; UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLOAM0781 murC; UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CLOAM0784 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLOAM1339 ddlB; D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLOAM0786 putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match,murE/murF-like) K15792 murEF; MurE/MurF fusion protein [EC:6.3.2.13 6.3.2.10]
D CLOAM1574 ispU; Undecaprenyl pyrophosphate synthetase (UPP synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLOAM1041 putative undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLOAM0785 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase (UDP-MurNAc-pentapeptide phosphotransferase) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLOAM0782 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CLOAM0934 Monofunctional biosynthetic peptidoglycan transglycosylase (Monofunctional TGase) (fragment) K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CLOAM1238 mrcA; penicillin-binding bifunctional protein 1A (PBP-1a) (PBP1a) [Includes: penicillin-insensitive transglycosylase (peptidoglycan TGase); penicillin-sensitive transpeptidase (DD-transpeptidase)] K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLOAM1803 mrdA; Penicillin-binding protein 2 (PBP-2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:caci00552]
D CLOAM1041 putative undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLOAM0554 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLOAM0636 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:caci00543]
D CLOAM0554 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLOAM0636 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLOAM1579 Alginate O-acetylation protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:caci00730]
D CLOAM1487 Conserved hypothetical protein; putative ThiF domain K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D CLOAM1691 iscS; Cysteine desulfurase (ThiI transpersulfidase) (NifS protein homolog) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLOAM0921 hydG; Fe-hydrogenase assembly protein,S-adenosylmethionine radical protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D CLOAM0157 dxs; 1-deoxy-D-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CLOAM0034 putative GTPase YjeQ K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CLOAM0118 putative Thiamine pyrophosphokinase (TPK) (Thiamine diphosphokinase) (thiN-like) K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D CLOAM1458 adk; Adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:caci00740]
D CLOAM1453 ribA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CLOAM1819 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CLOAM1423 ribE; riboflavin synthase beta chain K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CLOAM0451 putative riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CLOAM0270 ribF; Riboflavin biosynthesis protein [Includes: Riboflavin kinase (Flavokinase); FMN adenylyltransferase (FAD pyrophosphorylase) (FAD synthetase)] K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
C 00750 Vitamin B6 metabolism [PATH:caci00750]
D CLOAM0285 pdxK; Pyridoxine kinase (Pyridoxal kinase) (Vitamin B6 kinase) (Pyridoxamine kinase) (PN/PL/PM kinase) K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D CLOAM0992 serC; phosphoserine aminotransferase (PSAT) (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CLOAM0719 putative threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:caci00760]
D CLOAM0357 putative NADH-dependent fumarate reductase (frd) K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CLOAM0328 nadA; quinolinate synthetase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D CLOAM1857 nadC; nicotinate-nucleotide pyrophosphorylase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D CLOAM0405 Purine nucleoside phosphorylase 1 (Purine nucleoside phosphorylase I) (PNP I) (PU-NPase I) (Inosine phosphorylase) K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CLOAM0524 putative 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CLOAM1796 putative 5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45]
D CLOAM1168 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLOAM0053 putative nicotinate (nicotinamide) nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CLOAM0890 npdA; NAD-dependent deacetylase (Regulatory protein SIR2 homolog) K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D CLOAM0035 putative inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase) (modular protein) K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:caci00770]
D CLOAM1642 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate hydroxymethyltransferase) K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CLOAM1082 panC; Pantoate--beta-alanine ligase (Pantothenate synthetase) (Pantoate activating enzyme) K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CLOAM1150 putative Pantothenate kinase type III (PanK,CoaX) K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D CLOAM1437 dfp; Coenzyme A biosynthesis bifunctional protein coaBC (DNA/pantothenate metabolism flavoprotein) [Includes: Phosphopantothenoylcysteine decarboxylase (PPCDC) (CoaC); Phosphopantothenate--cysteine ligase (Phosphopantothenoylcysteine synthase) (PPC synthetase) (PPCS) (CoaB)] K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CLOAM1088 coaD; Phosphopantetheine adenylyltransferase (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CLOAM0986 coaE; Dephospho-CoA kinase (Dephosphocoenzyme A kinase) K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CLOAM1460 acpS; Holo-[acyl-carrier-protein] synthase (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CLOAM1631 putative dihydropyrimidine dehydrogenase [NADP+] (DPD) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) (pydA) K00207 DPYD; dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2]
D CLOAM1081 panD; Aspartate 1-decarboxylase precursor (Aspartate alpha-decarboxylase) K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:caci00780]
D CLOAM0251 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLOAM0682 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM0253 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM0690 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM1164 8-amino-7-oxononanoate synthase (AONS) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase) K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CLOAM0448 hydEF; Fe-hydrogenase assembly protein (partial,N-terminal), S-adenosylmethionine(SAM) radical protein K01012 bioB; biotin synthase [EC:2.8.1.6]
D CLOAM1441 putative biotin ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:caci00785]
D CLOAM0056 lplA; Lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM1385 gcvPA; glycine dehydrogenase [decarboxylating] subunit 1 (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLOAM1384 gcvPB; glycine dehydrogenase [decarboxylating] subunit 2 (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLOAM1023 gcvT; aminomethyltransferase (Glycine cleavage system T protein) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLOAM0290 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:caci00790]
D CLOAM0916 conserved hypothetical protein K09007 folE2; GTP cyclohydrolase IB [EC:3.5.4.16]
D CLOAM0365 folB; Dihydroneopterin aldolase (DHNA) K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D CLOAM0988 folP; Dihydropteroate synthase (DHPS) (Dihydropteroate pyrophosphorylase) K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CLOAM1093 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D CLOAM1707 folC; FolC bifunctional protein [Includes: Folylpolyglutamate synthase (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolylpolyglutamate synthase); Dihydrofolate synthase] K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CLOAM1453 ribA; 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CLOAM1792 6-pyruvoyl tetrahydrobiopterin synthase family protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLOAM1484 Radical SAM K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CLOAM0922 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
C 00670 One carbon pool by folate [PATH:caci00670]
D CLOAM1093 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D CLOAM0539 folD; FolD bifunctional protein [Includes: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase] K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CLOAM0752 glyA; serine hydroxymethyltransferase (serine methylase) (SHMT) K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLOAM1541 purN; phosphoribosylglycinamide formyltransferase (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CLOAM1899 purH; Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLOAM0177 ftcd; Formimidoyltransferase-cyclodeaminase (Formiminotransferase-cyclodeaminase) (FTCD) [Includes: Glutamate formimidoyltransferase (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoyltetrahydrofolate cyclodeaminase (Formiminotetrahydrofolate cyclodeaminase)] K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4]
D CLOAM0008 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CLOAM1023 gcvT; aminomethyltransferase (Glycine cleavage system T protein) K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:caci00130]
D CLOAM1666 wrbA; putative conserved flavoprotein K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:caci00900]
D CLOAM0157 dxs; 1-deoxy-D-xylulose-5-phosphate synthase (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CLOAM1853 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CLOAM1491 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D CLOAM0435 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CLOAM1489 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (MECPS) (MECDP-synthase) K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D CLOAM0381 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLOAM0326 ispA; Geranylgeranyl pyrophosphate synthetase homolog (GGPP synthetase) (Farnesyltranstransferase) K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CLOAM1320 putative geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CLOAM1574 ispU; Undecaprenyl pyrophosphate synthetase (UPP synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CLOAM1259 putative Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:caci00523]
D CLOAM0279 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLOAM0644 putative dTDP-6-deoxy-D-glucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D CLOAM0279 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:caci00261]
D CLOAM0441 lysC; Aspartokinase 2 (Aspartokinase II) (Aspartate kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLOAM0633 asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLOAM0032 dapA; dihydrodipicolinate synthase (DHDPS) K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CLOAM0281 dapB; dihydrodipicolinate reductase (DHPR) K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:caci00521]
D CLOAM1376 putative Glucokinase (Glucose kinase) (glcK-like) K25026 glk; glucokinase [EC:2.7.1.2]
D CLOAM0516 cpsG; Phosphomannomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CLOAM0423 ino1; Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D CLOAM0279 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLOAM0644 putative dTDP-6-deoxy-D-glucose-3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D CLOAM1376 putative Glucokinase (Glucose kinase) (glcK-like) K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis
D CLOAM0279 rffG; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:caci00401]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM0138 putative aromatic amino acid aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
C 00333 Prodigiosin biosynthesis
D CLOAM0254 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLOAM0682 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM0253 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM0690 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CLOAM0680 putative acyl carrier protein (acpP-like) K02078 acpP; acyl carrier protein
D CLOAM0252 acpP; Acyl carrier protein (ACP) K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D CLOAM1766 metK; S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (MAT) K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:caci00362]
D CLOAM1513 putative Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D CLOAM1771 putative S-Methylmalonyl-CoA decarboxylase,sodium-translocating subunit, beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation [PATH:caci00627]
D CLOAM0741 putative acylphosphatase (Acylphosphate phosphohydrolase) K01512 acyP; acylphosphatase [EC:3.6.1.7]
D CLOAM0042 atoD; Acetoacetate:butyrate CoA-transferase alpha subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLOAM0043 atoA; Acetoacetate:butyrate CoA-transferase beta subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:caci03020]
D CLOAM0456 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLOAM0455 rpoC; RNA polymerase, beta' subunit; binds Zn(II) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLOAM1113 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:caci03010]
D CLOAM1220 30S ribosomal subunit protein S1 (modular protein) K02945 RP-S1; small subunit ribosomal protein S1
D CLOAM1687 putative Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CLOAM1890 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CLOAM1134 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CLOAM1114 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLOAM1123 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CLOAM1610 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CLOAM0453 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CLOAM1126 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CLOAM1893 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CLOAM1141 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CLOAM1115 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CLOAM0454 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CLOAM1116 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CLOAM1127 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CLOAM1474 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CLOAM1467 rpsP; Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CLOAM1131 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CLOAM1608 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CLOAM1136 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CLOAM0933 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CLOAM1822 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CLOAM0459 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CLOAM1137 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CLOAM1140 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CLOAM1139 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CLOAM1128 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CLOAM1125 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CLOAM0457 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CLOAM1606 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CLOAM0458 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CLOAM0460 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CLOAM1894 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CLOAM1130 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CLOAM1121 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CLOAM1133 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CLOAM1112 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CLOAM1124 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CLOAM1462 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CLOAM0531 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CLOAM0293 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CLOAM1135 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CLOAM1138 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CLOAM1129 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CLOAM1612 rplY; ribosoma protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CLOAM0292 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CLOAM1411 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CLOAM1132 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CLOAM1122 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CLOAM0173 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CLOAM0257 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CLOAM0463 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CLOAM0547 rpmH; 50S ribosomal subunit protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CLOAM0530 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CLOAM1117 rpmJ; 50S ribosomal subunit protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CLOAM_23s_1 ribosomal RNA 23s K01980 23SrRNA; 23S ribosomal RNA
D CLOAM_5s_1 ribosomal RNA 5s K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:caci00970]
D CLOAMtRNA28 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLOAMtRNA46 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLOAMtRNA6 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLOAMtRNA26 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLOAMtRNA8 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLOAMtRNA16 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLOAMtRNA10 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLOAMtRNA35 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLOAMtRNA4 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLOAMtRNA44 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLOAMtRNA40 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLOAMtRNA32 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLOAMtRNA34 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLOAMtRNA37 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLOAMtRNA22 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLOAMtRNA36 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLOAMtRNA21 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLOAMtRNA20 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLOAMtRNA24 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLOAMtRNA25 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLOAMtRNA5 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLOAMtRNA14 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLOAMtRNA7 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLOAMtRNA1 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLOAMtRNA41 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLOAMtRNA42 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CLOAMtRNA39 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLOAMtRNA19 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLOAMtRNA18 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLOAM0997 gltX; Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLOAM1207 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CLOAM1696 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLOAM1540 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLOAM0728 Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLOAM0316 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CLOAM0616 putative glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CLOAM0744 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLOAM1669 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLOAM0734 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLOAM0440 Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLOAM0008 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CLOAM0259 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLOAM1110 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLOAM0569 Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLOAM1688 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLOAM0359 Arginyl-tRNA synthetase 1 (Arginine--tRNA ligase 1) (ArgRS 1) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLOAM0426 Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLOAM0335 putative Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLOAM0515 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLOAM0533 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLOAM0534 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLOAM0627 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLOAM1432 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:caci03060]
D CLOAM1120 secY; preprotein translocase secY subunit, essential membrane protein K03076 secY; preprotein translocase subunit SecY
D CLOAM0462 secE; Preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D CLOAM1170 secG; protein-export membrane protein secG, essential membrane protein K03075 secG; preprotein translocase subunit SecG
D CLOAM1010 secD; protein-export membrane protein secD, accessory membrane protein K03072 secD; preprotein translocase subunit SecD
D CLOAM1009 secF; protein-export membrane protein secF, accessory membrane protein K03074 secF; preprotein translocase subunit SecF
D CLOAM0006 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CLOAM0544 Preprotein translocase subunit YidC (modular protein) K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLOAM1732 secA; preprotein translocase secA subunit, essential ATPase protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLOAM1602 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLOAM0799 ftsY; Cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLOAM1675 putative signal peptidase I (lepB) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLOAM0407 Signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:caci04122]
D CLOAM1691 iscS; Cysteine desulfurase (ThiI transpersulfidase) (NifS protein homolog) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLOAM1161 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLOAM0896 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / fibronectin/fibrinogen-binding protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLOAM1487 Conserved hypothetical protein; putative ThiF domain K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:caci03018]
D CLOAM1651 eno; enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLOAM1473 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CLOAM0909 putative ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLOAM0952 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CLOAM0537 KH domain/HD domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CLOAM0757 dnaK; Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D CLOAM1649 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:caci03030]
D CLOAM1746 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLOAM1210 DNA polymerase III, gamma/tau subunits (fragment) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLOAM0793 putative DNA polymerase III, delta prime subunit (holB-like) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLOAM1040 putative DNA polymerase III, delta subunit (holA-like) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLOAM1536 putative DNA polymerase III, beta chain (dnaN-like) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLOAM1089 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CLOAM1825 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CLOAM1609 Single-stranded DNA-binding protein (modular protein) K03111 ssb; single-strand DNA-binding protein
D CLOAM1007 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CLOAM1706 putative Ribonuclease H K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:caci03410]
D CLOAM0039 putative endonuclease III (nth-like) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CLOAM1877 putative formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CLOAM0287 ung; Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLOAM1175 xthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CLOAM0321 putative ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLOAM1265 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:caci03420]
D CLOAM0548 putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CLOAM0971 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D CLOAM0820 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D CLOAM0765 hypothetical protein K03703 uvrC; excinuclease ABC subunit C
D CLOAM0791 Excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D CLOAM0549 uvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLOAM0486 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:caci03430]
D CLOAM0950 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D CLOAM1824 putative recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLOAM0391 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLOAM1302 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D CLOAM0549 uvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLOAM0486 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLOAM0245 xseA; Exonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CLOAM0325 xseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CLOAM0321 putative ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLOAM1265 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLOAM1609 Single-stranded DNA-binding protein (modular protein) K03111 ssb; single-strand DNA-binding protein
D CLOAM1746 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLOAM1536 putative DNA polymerase III, beta chain (dnaN-like) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLOAM1210 DNA polymerase III, gamma/tau subunits (fragment) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLOAM1040 putative DNA polymerase III, delta subunit (holA-like) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLOAM0793 putative DNA polymerase III, delta prime subunit (holB-like) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLOAM0204 N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0203 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0502 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0503 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM1327 Modification methylase MjaIII (Adenine-specific methyltransferase MjaIII) (M.MjaIII) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:caci03440]
D CLOAM0321 putative ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLOAM1265 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLOAM1609 Single-stranded DNA-binding protein (modular protein) K03111 ssb; single-strand DNA-binding protein
D CLOAM1537 putative putative DNA repair and genetic recombination (recF-like) K03629 recF; DNA replication and repair protein RecF
D CLOAM1059 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O)
D CLOAM0450 recR; recombination protein RecR K06187 recR; recombination protein RecR
D CLOAM1869 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D CLOAM0929 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CLOAM1679 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CLOAM0930 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CLOAM1698 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CLOAM1746 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLOAM1536 putative DNA polymerase III, beta chain (dnaN-like) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLOAM1210 DNA polymerase III, gamma/tau subunits (fragment) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLOAM1040 putative DNA polymerase III, delta subunit (holA-like) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLOAM0793 putative DNA polymerase III, delta prime subunit (holB-like) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLOAM0274 Primosomal protein n K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:caci02010]
D CLOAM1091 hypothetical protein K02064 thiB; thiamine transport system substrate-binding protein
D CLOAM1539 potD; spermidine/putrescine-binding periplasmic protein precursor (SPBP) K11069 potD; spermidine/putrescine transport system substrate-binding protein
D CLOAM0766 potC; Spermidine/putrescine transport system permease protein potC (ABC transporter) K11070 potC; spermidine/putrescine transport system permease protein
D CLOAM0767 potB; Spermidine/putrescine transport system permease protein potB (ABC transporter) K11071 potB; spermidine/putrescine transport system permease protein
D CLOAM0768 potA; Spermidine/putrescine import ATP-binding protein potA (ABC transporter) K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D CLOAM1845 ycjV; putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CLOAM1097 hypothetical protein; putative signal peptide K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CLOAM0133 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CLOAM0169 hypothetical protein; putative signal peptide K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CLOAM1090 conserved hypothetical protein; putative membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CLOAM1095 transporter, putative (modular protein) K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CLOAM1374 hypothetical protein; putative membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CLOAM1094 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CLOAM1236 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CLOAM1373 hypothetical protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CLOAM1518 Phosphonates-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D CLOAM1644 ABC-type phosphonates transport system permease protein precursor K02042 phnE; phosphonate transport system permease protein
D CLOAM1519 phnC; phosphonate/organophosphate ester transporter subunit; ATP-binding component of ABC superfamily K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D CLOAM0130 znuA; ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding (lipo)protein (surface adhesin A) K09815 znuA; zinc transport system substrate-binding protein
D CLOAM0128 ABC transporter, permease protein K09816 znuB; zinc transport system permease protein
D CLOAM0129 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CLOAM1354 Putative cobalt transport system permease protein (ABC transporter) (cbiQ-like) K16785 ecfT; energy-coupling factor transport system permease protein
D CLOAM0956 hypothetical protein; putative membrane protein K09696 natB; sodium transport system permease protein
D CLOAM0955 ccmA; ABC-type multidrug transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLOAM1268 hypothetical protein; putative membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D CLOAM0143 hypothetical protein; putative membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D CLOAM1269 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D CLOAM0967 putative Permease YjgP/YjgQ K07091 lptF; lipopolysaccharide export system permease protein
D CLOAM0966 putative Permease K11720 lptG; lipopolysaccharide export system permease protein
D CLOAM1759 lptB; putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CLOAM0412 ABC transporter, ATP-binding protein, MsbA family (modular protein) K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CLOAM1019 putative ABC transporter, transmembrane region:ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLOAM1522 mdlB; ABC-type multidrug/protein/lipid transport system, ATPase component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLOAM1020 putative ABC transporter (membrane (N-terminal),atp_bind (C-terminal)) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLOAM1521 ABC transporter, transmembrane region:ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:caci02060]
D CLOAM1752 putative PEP-protein phosphotransferase of PTS system (enzyme I) K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CLOAM1753 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D CLOAM0343 hypothetical protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
C 03070 Bacterial secretion system [PATH:caci03070]
D CLOAM0087 hypothetical protein; putative signal peptide K12340 tolC; outer membrane protein
D CLOAM1010 secD; protein-export membrane protein secD, accessory membrane protein K03072 secD; preprotein translocase subunit SecD
D CLOAM1009 secF; protein-export membrane protein secF, accessory membrane protein K03074 secF; preprotein translocase subunit SecF
D CLOAM0462 secE; Preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D CLOAM1170 secG; protein-export membrane protein secG, essential membrane protein K03075 secG; preprotein translocase subunit SecG
D CLOAM1120 secY; preprotein translocase secY subunit, essential membrane protein K03076 secY; preprotein translocase subunit SecY
D CLOAM0006 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CLOAM0544 Preprotein translocase subunit YidC (modular protein) K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLOAM1732 secA; preprotein translocase secA subunit, essential ATPase protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLOAM0799 ftsY; Cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLOAM1602 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:caci02020]
D CLOAM1866 degQ; protease degQ K04771 degP; serine protease Do [EC:3.4.21.107]
D CLOAM0010 protease degQ (fragment) K04771 degP; serine protease Do [EC:3.4.21.107]
D CLOAM0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D CLOAM1714 mae; NAD-dependent malic enzyme (NAD-ME) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CLOAM0663 GDP-mannose 6-dehydrogenase (GMD) K00066 algD; GDP-mannose 6-dehydrogenase [EC:1.1.1.132]
D CLOAM0955 ccmA; ABC-type multidrug transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLOAM0956 hypothetical protein; putative membrane protein K09696 natB; sodium transport system permease protein
D CLOAM0630 glnA; glutamine synthetase (glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLOAM0876 putative sigma-54 dependent DNA-binding response regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
D CLOAM0042 atoD; Acetoacetate:butyrate CoA-transferase alpha subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLOAM0043 atoA; Acetoacetate:butyrate CoA-transferase beta subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLOAM1757 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CLOAM1401 putative Pilus biogenesis protein tapA precursor K02650 pilA; type IV pilus assembly protein PilA
D CLOAM1448 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLOAM0087 hypothetical protein; putative signal peptide K12340 tolC; outer membrane protein
D CLOAM0675 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D CLOAM1160 Ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:caci02024]
D CLOAM1448 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLOAM1819 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CLOAM0544 Preprotein translocase subunit YidC (modular protein) K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLOAM0304 putative serine peptidase precursor; putative signal peptide K14645 K14645; serine protease [EC:3.4.21.-]
D CLOAM0462 secE; Preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D CLOAM1170 secG; protein-export membrane protein secG, essential membrane protein K03075 secG; preprotein translocase subunit SecG
D CLOAM1120 secY; preprotein translocase secY subunit, essential membrane protein K03076 secY; preprotein translocase subunit SecY
D CLOAM0006 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CLOAM1732 secA; preprotein translocase secA subunit, essential ATPase protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLOAM0799 ftsY; Cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLOAM1602 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
C 02040 Flagellar assembly [PATH:caci02040]
D CLOAM0739 putative RNA polymerase, sigma S (sigma 38) factor K03086 rpoD; RNA polymerase primary sigma factor
D CLOAM1826 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D CLOAM1757 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CLOAM1651 eno; enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism [PATH:caci04980]
D CLOAM0805 argK; ATPase/kinase associated with arginine transport K07588 MMAA; GTPase [EC:3.6.5.-]
D CLOAM0803 mutA; Methylmalonyl-CoA mutase small subunit (MCM-beta) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
D CLOAM0804 mutB; Methylmalonyl-CoA mutase large subunit (MCM-alpha) K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:caci01501]
D CLOAM1033 hypothetical protein; putative signal peptide K03585 acrA; membrane fusion protein, multidrug efflux system
D CLOAM0087 hypothetical protein; putative signal peptide K12340 tolC; outer membrane protein
D CLOAM1238 mrcA; penicillin-binding bifunctional protein 1A (PBP-1a) (PBP1a) [Includes: penicillin-insensitive transglycosylase (peptidoglycan TGase); penicillin-sensitive transpeptidase (DD-transpeptidase)] K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLOAM1803 mrdA; Penicillin-binding protein 2 (PBP-2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:caci01502]
D CLOAM1339 ddlB; D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLOAM0785 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase (UDP-MurNAc-pentapeptide phosphotransferase) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLOAM0782 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:caci01503]
D CLOAM1516 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLOAM1866 degQ; protease degQ K04771 degP; serine protease Do [EC:3.4.21.107]
D CLOAM0010 protease degQ (fragment) K04771 degP; serine protease Do [EC:3.4.21.107]
D CLOAM1033 hypothetical protein; putative signal peptide K03585 acrA; membrane fusion protein, multidrug efflux system
D CLOAM0087 hypothetical protein; putative signal peptide K12340 tolC; outer membrane protein
D CLOAM1380 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:caci01000]
C 01001 Protein kinases [BR:caci01001]
D CLOAM0927 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D CLOAM1190 Anti-sigma regulatory factor (Ser/Thr protein kinase) (modular protein) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D CLOAM0434 putative Non-specific protein-tyrosine kinase K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
C 01009 Protein phosphatases and associated proteins [BR:caci01009]
D CLOAM1471 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D CLOAM1689 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CLOAM1722 hypothetical protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:caci01002]
D CLOAM0407 Signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CLOAM0731 putative bifunctional prepilin leader peptidase and methylase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLOAM0898 guaA; GMP synthase [glutamine-hydrolyzing] (Glutamine amidotransferase) (GMP synthetase) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CLOAM0369 purF; amidophosphoribosyltransferase precursor (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLOAM0957 glmS; glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-phosphate synthase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLOAM1490 putative glutamine-fructose-6-phosphate transaminase [isomerizing] (glucosamine--fructose-6-phosphate aminotransferase) K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLOAM0669 putative Asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CLOAM1585 asnB; asparagine synthetase (Glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CLOAM0033 Peptidase M16, C-terminal:Peptidase M16,N-terminal K06972 PITRM1; presequence protease [EC:3.4.24.-]
D CLOAM0917 putative zinc protease (metalloendopeptidase) (ymxG module) K07263 pqqL; zinc protease [EC:3.4.24.-]
D CLOAM0080 putative Peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D CLOAM0131 pepA; cytosol aminopeptidase (leucine aminopeptidase) (LAP) (leucyl aminopeptidase) (aminopeptidase A/I) K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CLOAM0280 putative peptidase T (tripeptide aminopeptidase) (aminotripeptidase) (tripeptidase) (yqjE) K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D CLOAM0632 putative Metal-dependent amidase/aminoacylase/carboxypeptidase K05823 dapL; N-acetyldiaminopimelate deacetylase [EC:3.5.1.47]
D CLOAM1119 map; methionine aminopeptidase (MAP) (peptidase M) K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CLOAM1087 pepP; Xaa-Pro aminopeptidase (X-Pro aminopeptidase) (aminopeptidase P II) (APP-II) (aminoacylproline aminopeptidase) K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CLOAM1092 hypothetical protein K19689 ampS; aminopeptidase [EC:3.4.11.-]
D CLOAM0831 ftsH; Cell division protein FtsH, ATP-dependent zinc protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLOAM1145 htpX; Zn-dependent protease with chaperone function K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D CLOAM1502 putative zinc metallopeptidase K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CLOAM0998 conserved hypothetical protein K16203 dppA1; D-amino peptidase [EC:3.4.11.-]
D CLOAM1866 degQ; protease degQ K04771 degP; serine protease Do [EC:3.4.21.107]
D CLOAM0010 protease degQ (fragment) K04771 degP; serine protease Do [EC:3.4.21.107]
D CLOAM0304 putative serine peptidase precursor; putative signal peptide K14645 K14645; serine protease [EC:3.4.21.-]
D CLOAM1085 clpP; proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CLOAM1447 lon; DNA-binding ATP-dependent protease La; heat shock K-protein K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CLOAM0975 Protein umuD [Contains: Protein umuD'] K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D CLOAM1675 putative signal peptidase I (lepB) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLOAM0355 ctpA; tail-specific protease precursor (carboxy-terminal processing protease precursor) (C-terminal processing peptidase) K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CLOAM0188 putative Tricorn protease homolog K08676 tri; tricorn protease [EC:3.4.21.-]
D CLOAM0825 putative tricorn protease (tri); putative signal peptide K08676 tri; tricorn protease [EC:3.4.21.-]
D CLOAM1029 putative Acid phosphatase K04773 sppA; protease IV [EC:3.4.21.-]
D CLOAM1902 putative protease IV (signal peptide peptidase) K04773 sppA; protease IV [EC:3.4.21.-]
D CLOAM0830 hslV; peptidase component of the HslUV protease K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D CLOAM0309 conserved hypothetical protein K03568 tldD; TldD protein
C 01003 Glycosyltransferases [BR:caci01003]
D CLOAM1680 glycosyl transferase, group 2 family protein K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D CLOAM0878 putative 4-alpha-glucanotransferase K16150 K16150; glycogen synthase [EC:2.4.1.11]
D CLOAM0934 Monofunctional biosynthetic peptidoglycan transglycosylase (Monofunctional TGase) (fragment) K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CLOAM1238 mrcA; penicillin-binding bifunctional protein 1A (PBP-1a) (PBP1a) [Includes: penicillin-insensitive transglycosylase (peptidoglycan TGase); penicillin-sensitive transpeptidase (DD-transpeptidase)] K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLOAM0554 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLOAM0636 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:caci01005]
D CLOAM1380 lpxA; UDP-N-acetylglucosamine acetyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CLOAM1069 putative lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CLOAM1381 lpxC_fabZ; LpxC/fabZ bifunctional enzyme [Includes: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase); (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase)] K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D CLOAM1382 lpxD; UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CLOAM1417 putative UDP-2,3-diacylglucosamine hydrolase (lpxH-like) K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CLOAM0762 putative tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CLOAM1049 putative Lipid A biosynthesis acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CLOAM0901 putative 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CLOAM1765 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CLOAM1795 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CLOAM1764 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CLOAM0743 carbohydrate isomerase, KpsF/GutQ family K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CLOAM0368 Carbohydrate kinase, PfkB K21344 rfaE1; D-glycero-beta-D-manno-heptose-7-phosphate kinase [EC:2.7.1.167]
D CLOAM0367 Glycerol-3-phosphate cytidyltransferase K21345 rfaE2; D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase [EC:2.7.7.70]
D CLOAM0418 putative ADP-heptose:LPS heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CLOAM1569 hypothetical protein K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CLOAM1695 putative Glycosyl transferase, family 9 K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CLOAM1702 gmhA; phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CLOAM1177 gmbH; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CLOAM0554 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLOAM0636 putative UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLOAM1566 putative UDP-N-acetylglucosamine 4-epimerase K19997 gnu; GlcNAc-P-P-Und epimerase [EC:5.1.3.26]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:caci01011]
D CLOAM1615 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLOAM1544 murB; UDP-N-acetylenolpyruvoylglucosamine reductase (UDP-N-acetylmuramate dehydrogenase) K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLOAM0781 murC; UDP-N-acetylmuramate--L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase) K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CLOAM0784 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid adding enzyme) K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLOAM0786 putative bifunctional MurE/MurF enzyme [Includes: UDP-N-acetylmuramoylalanyl-D-glutamate--2; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (UDP-MurNAc-pentapeptide synthetase)] (partial match,murE/murF-like) K15792 murEF; MurE/MurF fusion protein [EC:6.3.2.13 6.3.2.10]
D CLOAM1339 ddlB; D-alanine--D-alanine ligase (D-alanylalanine synthetase) (D-Ala-D-Ala ligase) K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLOAM0911 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CLOAM0785 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase (UDP-MurNAc-pentapeptide phosphotransferase) K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLOAM0782 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CLOAM1041 putative undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLOAM0792 conserved hypothetical protein; putative membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D CLOAM1238 mrcA; penicillin-binding bifunctional protein 1A (PBP-1a) (PBP1a) [Includes: penicillin-insensitive transglycosylase (peptidoglycan TGase); penicillin-sensitive transpeptidase (DD-transpeptidase)] K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLOAM1803 mrdA; Penicillin-binding protein 2 (PBP-2) K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CLOAM0934 Monofunctional biosynthetic peptidoglycan transglycosylase (Monofunctional TGase) (fragment) K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28]
D CLOAM1709 putative Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CLOAM1508 predicted periplasmic solute-binding protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CLOAM1000 hypothetical protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CLOAM1516 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:caci01004]
D CLOAM0254 fabD; malonyl-CoA-[acyl-carrier-protein] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLOAM0689 beta-ketoacyl-acyl carrier protein synthase (fabH-like) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLOAM0255 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLOAM0251 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLOAM0682 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM0253 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM0690 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLOAM1381 lpxC_fabZ; LpxC/fabZ bifunctional enzyme [Includes: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (UDP-3-O-acyl-GlcNAc deacetylase); (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase ((3R)-hydroxymyristoyl ACP dehydrase)] K16363 lpxC-fabZ; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase / 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:3.5.1.108 4.2.1.59]
D CLOAM1438 putative beta-ketoacyl-acyl-carrier-protein reductase (fabG-like) K11610 mabA; beta-ketoacyl ACP reductase [EC:1.1.1.100]
D CLOAM0256 plsX; fatty acid/phospholipid synthesis protein,methyltransferase domain K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CLOAM0370 conserved hypothetical protein; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CLOAM0162 hypothetical protein; putative membrane protein K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CLOAM1445 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase (1-AGP acyltransferase) (1-AGPAT) (Lysophosphatidic acid acyltransferase) (LPAAT) (plsC) K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:caci01006]
D CLOAM0326 ispA; Geranylgeranyl pyrophosphate synthetase homolog (GGPP synthetase) (Farnesyltranstransferase) K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CLOAM1320 putative geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CLOAM1574 ispU; Undecaprenyl pyrophosphate synthetase (UPP synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLOAM1301 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:caci01007]
D CLOAM1207 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CLOAM0997 gltX; Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLOAM0627 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLOAM1432 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CLOAM0734 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLOAM0359 Arginyl-tRNA synthetase 1 (Arginine--tRNA ligase 1) (ArgRS 1) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLOAM0440 Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLOAM0569 Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLOAM0259 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLOAM1110 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLOAM1688 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLOAM1540 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLOAM0728 Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLOAM0335 putative Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLOAM0515 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLOAM0316 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CLOAM0616 putative glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CLOAM1669 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLOAM0426 Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLOAM0744 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLOAM1696 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLOAM0533 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLOAM0534 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLOAM0614 aspC; PLP-dependent aspartate aminotransferase (Transaminase A) (ASPAT) (class-I pyridoxal-phosphate-dependent aminotransferase) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM1245 putative alanine transaminase (class-I pyridoxal-phosphate-dependent aminotransferase) (alaT/patA-like) K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLOAM0138 putative aromatic amino acid aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLOAM0960 kbl; glycine C-acetyltransferase K00639 kbl; glycine C-acetyltransferase [EC:2.3.1.29]
D CLOAM1164 8-amino-7-oxononanoate synthase (AONS) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase) K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CLOAM1025 class-II pyridoxal-phosphate-dependent aminotransferase (malY/patB-like) K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLOAM1147 putative ornithine/acetylornithine/succinyldiaminopimelate aminotransferase (ornithine/acetylornithine/succinyldiaminopimelate transaminase) (dapC-like) K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13]
D CLOAM0992 serC; phosphoserine aminotransferase (PSAT) (phosphoserine transaminase) K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CLOAM0659 DegT/DnrJ/EryC1/StrS family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:caci03000]
D CLOAM1906 hypothetical protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLOAM1448 hypothetical protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLOAM0746 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D CLOAM1441 putative biotin ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CLOAM0278 parB-like domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLOAM0755 hypothetical protein K03705 hrcA; heat-inducible transcriptional repressor
D CLOAM1719 pyrR; Bifunctional protein : Pyrimidine operon regulatory protein; Uracil phosphoribosyltransferase (UPRTase) K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLOAM0790 mraZ; Protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:caci03021]
D CLOAM1113 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLOAM0456 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLOAM0455 rpoC; RNA polymerase, beta' subunit; binds Zn(II) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLOAM0739 putative RNA polymerase, sigma S (sigma 38) factor K03086 rpoD; RNA polymerase primary sigma factor
D CLOAM1826 rpoD; RNA polymerase sigma factor K03086 rpoD; RNA polymerase primary sigma factor
D CLOAM1757 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CLOAM0263 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D CLOAM1422 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D CLOAM0461 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D CLOAM1190 Anti-sigma regulatory factor (Ser/Thr protein kinase) (modular protein) K17752 rsbT; serine/threonine-protein kinase RsbT [EC:2.7.11.1]
D CLOAM0806 putative bifunctional signal transducer for sigma factor regulation / phosphoserine phosphatase K07315 rsbU_P; phosphoserine phosphatase RsbU/P [EC:3.1.3.3]
D CLOAM0366 conserved hypothetical protein K03803 rseC; sigma-E factor negative regulatory protein RseC
D CLOAM0049 putative transcription elongation factor K03624 greA; transcription elongation factor GreA
D CLOAM0952 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:caci03019]
D CLOAM1903 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D CLOAM0250 rnc; dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLOAM0537 KH domain/HD domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CLOAM0909 putative ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLOAM0272 putative 3'-5' exoribonuclease yhaM K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D CLOAM1651 eno; enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLOAM1473 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CLOAM0952 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CLOAM0757 dnaK; Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D CLOAM1649 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
C 03041 Spliceosome
C 03011 Ribosome [BR:caci03011]
D CLOAM1220 30S ribosomal subunit protein S1 (modular protein) K02945 RP-S1; small subunit ribosomal protein S1
D CLOAM1687 putative Ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CLOAM1890 rpsB; 30S ribosomal subunit protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CLOAM1134 rpsC; 30S ribosomal subunit protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CLOAM1114 rpsD; 30S ribosomal subunit protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLOAM1123 rpsE; 30S ribosomal subunit protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CLOAM1610 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CLOAM0453 rpsG; 30S ribosomal subunit protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CLOAM1126 rpsH; 30S ribosomal subunit protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CLOAM1893 rpsI; 30S ribosomal subunit protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CLOAM1141 rpsJ; 30S ribosomal subunit protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CLOAM1115 rpsK; 30S ribosomal subunit protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CLOAM0454 rpsL; 30S ribosomal subunit protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CLOAM1116 rpsM; 30S ribosomal subunit protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CLOAM1127 rpsN; ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CLOAM1474 rpsO; 30S ribosomal subunit protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CLOAM1467 rpsP; Ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CLOAM1131 rpsQ; 30S ribosomal subunit protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CLOAM1608 rpsR; 30S ribosomal subunit protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CLOAM1136 rpsS; 30S ribosomal subunit protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CLOAM0933 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CLOAM1822 rpsU; 30S ribosomal subunit protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CLOAM0459 rplA; 50S ribosomal subunit protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CLOAM1137 rplB; 50S ribosomal subunit protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CLOAM1140 rplC; 50S ribosomal subunit protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CLOAM1139 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CLOAM1128 rplE; 50S ribosomal subunit protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CLOAM1125 rplF; 50S ribosomal subunit protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CLOAM1606 rplI; ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CLOAM0458 rplJ; ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CLOAM0460 rplK; 50S ribosomal subunit protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CLOAM0457 rplL; 50S ribosomal subunit protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CLOAM1894 rplM; 50S ribosomal subunit protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CLOAM1130 rplN; 50S ribosomal subunit protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CLOAM1121 rplO; 50S ribosomal subunit protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CLOAM1133 rplP; 50S ribosomal subunit protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CLOAM1112 rplQ; 50S ribosomal subunit protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CLOAM1124 rplR; 50S ribosomal subunit protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CLOAM1462 rplS; 50S ribosomal subunit protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CLOAM0531 rplT; 50S ribosomal subunit protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CLOAM0293 rplU; 50S ribosomal subunit protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CLOAM1135 rplV; 50S ribosomal subunit protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CLOAM1138 rplW; 50S ribosomal subunit protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CLOAM1129 rplX; ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CLOAM0292 rpmA; 50S ribosomal subunit protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CLOAM1411 rpmB; ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CLOAM1132 rpmC; ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CLOAM1122 rpmD; 50S ribosomal subunit protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CLOAM0173 rpmE; 50S ribosomal subunit protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CLOAM0257 rpmF; ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CLOAM0463 rpmG; ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CLOAM0547 rpmH; 50S ribosomal subunit protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CLOAM0530 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CLOAM1117 rpmJ; 50S ribosomal subunit protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CLOAM1612 rplY; ribosoma protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CLOAM_5s_1 ribosomal RNA 5s K01985 5SrRNA; 5S ribosomal RNA
D CLOAM_23s_1 ribosomal RNA 23s K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:caci03009]
D CLOAM0250 rnc; dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLOAM1148 era; GTP-binding protein Era K03595 era; GTPase
D CLOAM0122 obg; DNA-binding GTPase involved in cell partioning K03979 obgE; GTPase [EC:3.6.5.-]
D CLOAM0263 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D CLOAM1422 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D CLOAM0461 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D CLOAM1814 ksgA; Dimethyladenosine transferase (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CLOAM0928 putative 16S rRNA m5C967 methyltransferase,S-adenosyl-L-methionine-dependent K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CLOAM0759 conserved hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CLOAM0276 putative S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division (gidB-like) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CLOAM0789 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CLOAM0961 predicted methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CLOAM1178 putative tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CLOAM0737 conserved hypothetical protein K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CLOAM1242 putative radical SAM-dependent enzyme (yfgB) K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CLOAM1144 trmA; SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CLOAM0345 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CLOAM1454 rluA; Pseudouridylate synthase, 23S RNA-specific K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CLOAM0358 putative Ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CLOAM0625 putative Acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CLOAM1465 hypothetical protein K02860 rimM; 16S rRNA processing protein RimM
D CLOAM1431 putative 2-alkenal reductase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D CLOAM1903 cafA; ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
D CLOAM1509 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CLOAM0034 putative GTPase YjeQ K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CLOAM0371 engA; GTP-binding protein K03977 engA; GTPase
D CLOAM0044 hflX; GTPase K03665 hflX; GTPase
D CLOAM0267 putative ribosome-binding factor A (rbfA-like) K02834 rbfA; ribosome-binding factor A
D CLOAM0262 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D CLOAM0360 conserved hypothetical protein K09710 ybeB; ribosome-associated protein
D CLOAM1232 conserved hypothetical protein K07042 ybeY; probable rRNA maturation factor
D CLOAM1755 ribosome-associated, sigma 54 modulation protein (modular protein) K05808 hpf; ribosome hibernation promoting factor
D CLOAM0346 conserved hypothetical protein K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:caci03016]
D CLOAM0553 hypothetical protein K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CLOAM0426 Prolyl-tRNA synthetase 2 (Proline--tRNA ligase 2) (ProRS 2) K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLOAM0569 Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS) K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLOAM1110 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLOAM0440 Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLOAM1207 glnS; glutamyl-tRNA synthetase K01886 QARS; glutaminyl-tRNA synthetase [EC:6.1.1.18]
D CLOAM0359 Arginyl-tRNA synthetase 1 (Arginine--tRNA ligase 1) (ArgRS 1) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLOAM1688 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLOAM1540 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLOAM1696 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLOAM0728 Asparaginyl-tRNA synthetase (Asparagine--tRNA ligase) (AsnRS) K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLOAM0744 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLOAM1669 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLOAM0734 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLOAM0259 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLOAM0335 putative Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLOAM0515 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLOAM0533 pheS; phenylalanine tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLOAM0534 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLOAM0627 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLOAM1432 Tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CLOAM1800 dtd; D-tyrosyl-tRNA deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D CLOAM0797 putative tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CLOAM0514 putative pseudouridylate synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CLOAM0269 truB; Pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CLOAM1691 iscS; Cysteine desulfurase (ThiI transpersulfidase) (NifS protein homolog) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLOAM1301 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CLOAM0156 trmE; tRNA modification GTPase trmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CLOAM1794 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CLOAM0634 hypothetical protein K01147 rnb; exoribonuclease II [EC:3.1.13.1]
D CLOAM1870 conserved hypothetical protein K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D CLOAM0316 glyQ; glycine tRNA synthetase, alpha subunit K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CLOAM0616 putative glycine tRNA synthetase, beta subunit K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CLOAM0997 gltX; Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS) K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLOAM0948 Cytosine/adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D CLOAM0795 dihydrouridine synthase family protein K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CLOAM0906 miaB; tRNA-i(6)A37 modification enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CLOAM1542 putative MiaB-like tRNA modifying enzyme K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D CLOAM1464 trmD; tRNA (guanine-1-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CLOAM0400 putative rRNA methylase K03437 spoU; RNA methyltransferase, TrmH family
D CLOAM1161 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLOAM0896 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / fibronectin/fibrinogen-binding protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLOAM1440 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CLOAM0922 exsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CLOAM1792 6-pyruvoyl tetrahydrobiopterin synthase family protein K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLOAM1484 Radical SAM K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CLOAM1273 conserved hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D CLOAM1501 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CLOAM0833 putative tRNA(Ile)-lysidine synthase (tilS-like) K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CLOAM1370 putative Peptidase M22, glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CLOAM1638 predicted ATPase or kinase K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CLOAM0420 Putative Molybdenum cofactor biosynthesis protein (ygdL-like); putative ThiF domain K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CLOAM0909 putative ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLOAM1473 pnp; polynucleotide phosphorylase/polyadenylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:caci03012]
D CLOAM0266 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CLOAM0529 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CLOAM0528 putative fused ATP-binding subunits of ABC superfamily protein involved in precise excision of transposons K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D CLOAM1828 putative transporter fused subunits of ABC superfamily: ATP-binding components K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D CLOAM1889 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D CLOAM0464 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D CLOAM0932 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CLOAM1619 fusA-; translation elongation factor G K02355 fusA; elongation factor G
D CLOAM0175 prfA; peptide chain release factor RF-1 K02835 prfA; peptide chain release factor 1
D CLOAM1887 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D CLOAM1616 modification methylase, HemK family K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CLOAM1611 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CLOAM1118 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CLOAM0572 efp; elongation factor P K02356 efp; elongation factor P
D CLOAM1575 prfB; Protein chain release factor B K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:caci03110]
D CLOAM0334 clpB; protein disaggregation chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CLOAM1086 clpX; ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CLOAM0829 hslU; molecular chaperone and ATPase component of HslUV protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D CLOAM1689 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CLOAM0757 dnaK; Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D CLOAM1649 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLOAM0758 dnaJ; Chaperone protein DnaJ (Heat shock protein 40) (HSP40) K03686 dnaJ; molecular chaperone DnaJ
D CLOAM0438 putative chaperonin, 33 kDa family K04083 hslO; molecular chaperone Hsp33
D CLOAM0756 grpE; GrpE protein K03687 GRPE; molecular chaperone GrpE
D CLOAM0112 putative Molecular chaperone (small heat shock protein) K13993 HSP20; HSP20 family protein
D CLOAM1852 hypothetical protein K13993 HSP20; HSP20 family protein
D CLOAM0817 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D CLOAM1866 degQ; protease degQ K04771 degP; serine protease Do [EC:3.4.21.107]
D CLOAM0010 protease degQ (fragment) K04771 degP; serine protease Do [EC:3.4.21.107]
D CLOAM0831 ftsH; Cell division protein FtsH, ATP-dependent zinc protease K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLOAM0304 putative serine peptidase precursor; putative signal peptide K14645 K14645; serine protease [EC:3.4.21.-]
D CLOAM0949 hypothetical protein; putative signal peptide K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D CLOAM1011 putative Peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D CLOAM0003 hypothetical protein; putative signal peptide K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CLOAM1300 putative Parvulin-like peptidyl-prolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CLOAM0004 putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor K03771 surA; peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8]
D CLOAM0816 trx; thioredoxin K03671 TXN; thioredoxin
D CLOAM0711 putative glutaredoxin K03676 grxC; glutaredoxin 3
C 04131 Membrane trafficking [BR:caci04131]
D CLOAM0822 ndk; nucleoside diphosphate kinase (NDK) (NDP kinase) (nucleoside-2-P kinase) K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CLOAM0888 hypothetical protein K15620 GOLPH3; golgi phosphoprotein 3
D CLOAM1530 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLOAM1840 gapA; Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLOAM0341 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CLOAM1689 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CLOAM1538 putative MFS transporter family protein K06902 UMF1; MFS transporter, UMF1 family
C 04121 Ubiquitin system
C 03051 Proteasome [BR:caci03051]
D CLOAM1689 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:caci03032]
D CLOAM0973 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K03530 hupB; DNA-binding protein HU-beta
D CLOAM1727 DNA-binding protein HU (DNA-binding protein II) (TL29) K03530 hupB; DNA-binding protein HU-beta
D CLOAM0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D CLOAM1089 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CLOAM1825 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CLOAM1609 Single-stranded DNA-binding protein (modular protein) K03111 ssb; single-strand DNA-binding protein
D CLOAM1746 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLOAM1536 putative DNA polymerase III, beta chain (dnaN-like) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLOAM1040 putative DNA polymerase III, delta subunit (holA-like) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLOAM0793 putative DNA polymerase III, delta prime subunit (holB-like) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLOAM1210 DNA polymerase III, gamma/tau subunits (fragment) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLOAM1007 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CLOAM1706 putative Ribonuclease H K03471 rnhC; ribonuclease HIII [EC:3.1.26.4]
D CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLOAM0204 N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0203 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0502 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0503 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM1327 Modification methylase MjaIII (Adenine-specific methyltransferase MjaIII) (M.MjaIII) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM1331 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CLOAM1332 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CLOAM1733 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:caci03036]
D CLOAM0250 rnc; dsRNA-specific ribonuclease K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLOAM0177 ftcd; Formimidoyltransferase-cyclodeaminase (Formiminotransferase-cyclodeaminase) (FTCD) [Includes: Glutamate formimidoyltransferase (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoyltetrahydrofolate cyclodeaminase (Formiminotetrahydrofolate cyclodeaminase)] K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4]
D CLOAM0973 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K03530 hupB; DNA-binding protein HU-beta
D CLOAM1727 DNA-binding protein HU (DNA-binding protein II) (TL29) K03530 hupB; DNA-binding protein HU-beta
D CLOAM0001 dnaA; chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D CLOAM0779 ftsA; Cell division and septation protein ftsA, ATPase domain K03590 ftsA; cell division protein FtsA
D CLOAM0347 ftsK; DNA translocase ftsK (DNA translocase SpoIIIE) K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CLOAM0780 Putative cell division protein FtsQ (ftsQ-like) K03589 ftsQ; cell division protein FtsQ
D CLOAM0783 ftsW; Essential cell division protein FtsW K03588 ftsW; cell division protein FtsW
D CLOAM0778 ftsZ; Cell division protein FtsZ, tubulin-like GTP-binding protein and GTPase K03531 ftsZ; cell division protein FtsZ
D CLOAM0535 hypothetical protein K09892 zapB; cell division protein ZapB
D CLOAM1516 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLOAM1033 hypothetical protein; putative signal peptide K03585 acrA; membrane fusion protein, multidrug efflux system
D CLOAM0404 putative Cell division initiation protein,DivIVA-like K04074 divIVA; cell division initiation protein
D CLOAM1807 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLOAM1806 hypothetical protein; putative signal peptide K03570 mreC; rod shape-determining protein MreC
D CLOAM1804 hypothetical protein; putative membrane protein K03571 mreD; rod shape-determining protein MreD
D CLOAM1802 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D CLOAM0277 soj protein K03496 parA; chromosome partitioning protein
D CLOAM0278 parB-like domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLOAM1794 gidA; glucose-inhibited division protein A K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CLOAM0276 putative S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division (gidB-like) K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CLOAM1589 Tyrosine recombinase xerD K04763 xerD; integrase/recombinase XerD
D CLOAM1682 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLOAM1650 Filamentation induced by cAMP protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D CLOAM1275 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D CLOAM1793 putative GTP-binding protein engB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:caci03400]
D CLOAM1461 Methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CLOAM0039 putative endonuclease III (nth-like) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CLOAM0327 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CLOAM0287 ung; Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLOAM1877 putative formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CLOAM1175 xthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CLOAM0321 putative ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLOAM1265 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLOAM0971 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A
D CLOAM0820 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B
D CLOAM0765 hypothetical protein K03703 uvrC; excinuclease ABC subunit C
D CLOAM0791 Excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D CLOAM0549 uvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLOAM0486 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLOAM0456 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLOAM0455 rpoC; RNA polymerase, beta' subunit; binds Zn(II) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLOAM1113 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLOAM0548 putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CLOAM0950 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS
D CLOAM1824 putative recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLOAM0391 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLOAM1302 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D CLOAM0245 xseA; Exonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CLOAM0325 xseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CLOAM1746 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLOAM1536 putative DNA polymerase III, beta chain (dnaN-like) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLOAM1040 putative DNA polymerase III, delta subunit (holA-like) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLOAM0793 putative DNA polymerase III, delta prime subunit (holB-like) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLOAM1210 DNA polymerase III, gamma/tau subunits (fragment) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLOAM1609 Single-stranded DNA-binding protein (modular protein) K03111 ssb; single-strand DNA-binding protein
D CLOAM0204 N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0203 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0502 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0503 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM1327 Modification methylase MjaIII (Adenine-specific methyltransferase MjaIII) (M.MjaIII) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM1869 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA
D CLOAM0929 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CLOAM1679 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CLOAM0930 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CLOAM0274 Primosomal protein n K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CLOAM0710 radA; DNA repair protein radA homolog (DNA repair protein sms homolog); putative ATP-dependent protease, with nucleoside triP hydrolase and multiheme cytochrome domains K04485 radA; DNA repair protein RadA/Sms
D CLOAM1537 putative putative DNA repair and genetic recombination (recF-like) K03629 recF; DNA replication and repair protein RecF
D CLOAM1698 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CLOAM1059 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O)
D CLOAM0450 recR; recombination protein RecR K06187 recR; recombination protein RecR
D CLOAM0036 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CLOAM0855 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D CLOAM1290 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D CLOAM1331 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CLOAM1332 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CLOAM1733 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CLOAM0973 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K03530 hupB; DNA-binding protein HU-beta
D CLOAM1727 DNA-binding protein HU (DNA-binding protein II) (TL29) K03530 hupB; DNA-binding protein HU-beta
D CLOAM0980 dinP; Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D CLOAM0776 Protein umuC K03502 umuC; DNA polymerase V
D CLOAM0975 Protein umuD [Contains: Protein umuD'] K03503 umuD; DNA polymerase V [EC:3.4.21.-]
D CLOAM1868 hypothetical protein K03565 recX; regulatory protein
D CLOAM1545 putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D CLOAM0913 putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLOAM0268 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:caci03029]
D CLOAM0266 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CLOAM0529 infC; protein chain initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CLOAM1889 tsf; elongation factor Ts K02357 tsf; elongation factor Ts
D CLOAM0464 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D CLOAM0932 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CLOAM1619 fusA-; translation elongation factor G K02355 fusA; elongation factor G
D CLOAM1148 era; GTP-binding protein Era K03595 era; GTPase
D CLOAM0627 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLOAM1110 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLOAM1540 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLOAM0359 Arginyl-tRNA synthetase 1 (Arginine--tRNA ligase 1) (ArgRS 1) K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLOAM1609 Single-stranded DNA-binding protein (modular protein) K03111 ssb; single-strand DNA-binding protein
D CLOAM1493 hypothetical protein; putative signal peptide K07277 SAM50; outer membrane protein insertion porin family
D CLOAM0757 dnaK; Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D CLOAM0756 grpE; GrpE protein K03687 GRPE; molecular chaperone GrpE
D CLOAM1649 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLOAM0817 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D CLOAM0758 dnaJ; Chaperone protein DnaJ (Heat shock protein 40) (HSP40) K03686 dnaJ; molecular chaperone DnaJ
D CLOAM1691 iscS; Cysteine desulfurase (ThiI transpersulfidase) (NifS protein homolog) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLOAM0544 Preprotein translocase subunit YidC (modular protein) K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLOAM1689 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:caci02000]
D CLOAM0412 ABC transporter, ATP-binding protein, MsbA family (modular protein) K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CLOAM1019 putative ABC transporter, transmembrane region:ABC transporter related K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLOAM1522 mdlB; ABC-type multidrug/protein/lipid transport system, ATPase component K18889 mdlA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLOAM1020 putative ABC transporter (membrane (N-terminal),atp_bind (C-terminal)) K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLOAM1521 ABC transporter, transmembrane region:ABC transporter related K18890 mdlB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLOAM1433 putative fused transporter subunits of ABC superfamily: ATP-binding components K15738 uup; ABC transport system ATP-binding/permease protein
D CLOAM1091 hypothetical protein K02064 thiB; thiamine transport system substrate-binding protein
D CLOAM1539 potD; spermidine/putrescine-binding periplasmic protein precursor (SPBP) K11069 potD; spermidine/putrescine transport system substrate-binding protein
D CLOAM0766 potC; Spermidine/putrescine transport system permease protein potC (ABC transporter) K11070 potC; spermidine/putrescine transport system permease protein
D CLOAM0767 potB; Spermidine/putrescine transport system permease protein potB (ABC transporter) K11071 potB; spermidine/putrescine transport system permease protein
D CLOAM0768 potA; Spermidine/putrescine import ATP-binding protein potA (ABC transporter) K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D CLOAM0807 putative ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CLOAM1845 ycjV; putative sugar transporter subunit: ATP-binding component of ABC superfamily transporter K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CLOAM0354 ybbM; putative UPF0014 membrane protein ybbM K02069 STAR2; UDP-glucose/iron transport system permease protein
D CLOAM0353 ybbL; Putative ABC transporter ATP-binding protein K02068 STAR1; UDP-glucose/iron transport system ATP-binding protein
D CLOAM1097 hypothetical protein; putative signal peptide K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CLOAM0133 hypothetical protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CLOAM0169 hypothetical protein; putative signal peptide K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CLOAM1090 conserved hypothetical protein; putative membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CLOAM1095 transporter, putative (modular protein) K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CLOAM1374 hypothetical protein; putative membrane protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CLOAM1094 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CLOAM1236 ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CLOAM1373 hypothetical protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CLOAM1096 hypothetical protein; putative signal peptide K18480 linN; cholesterol transport system auxiliary component
D CLOAM0889 putative Sugar ABC transporter, periplasmic sugar-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D CLOAM1247 malF; ABC-type sugar transport systems, permease components K02025 ABC.MS.P; multiple sugar transport system permease protein
D CLOAM1248 Sugar permeases (modular protein) K02026 ABC.MS.P1; multiple sugar transport system permease protein
D CLOAM1518 Phosphonates-binding protein K02044 phnD; phosphonate transport system substrate-binding protein
D CLOAM1644 ABC-type phosphonates transport system permease protein precursor K02042 phnE; phosphonate transport system permease protein
D CLOAM1519 phnC; phosphonate/organophosphate ester transporter subunit; ATP-binding component of ABC superfamily K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2]
D CLOAM1632 putative ABC-type amino acid transport system,periplasmic component K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CLOAM0599 Putative vitamin B12 transport system permease protein (ABC transporter) (btuC-like) K02015 ABC.FEV.P; iron complex transport system permease protein
D CLOAM0064 ABC transporter related (fragment) K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CLOAM0598 Putative vitamin B12-binding periplasmic protein precursor (ABC transporter) (btuF-like) K25034 btuF; cobalamin transport system substrate-binding protein
D CLOAM0130 znuA; ABC-type Mn/Zn transport system, periplasmic Mn/Zn-binding (lipo)protein (surface adhesin A) K09815 znuA; zinc transport system substrate-binding protein
D CLOAM0128 ABC transporter, permease protein K09816 znuB; zinc transport system permease protein
D CLOAM0129 ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CLOAM1354 Putative cobalt transport system permease protein (ABC transporter) (cbiQ-like) K16785 ecfT; energy-coupling factor transport system permease protein
D CLOAM1355 Putative cobalt import ATP-binding protein (ABC transporter) (cbiO-like) K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLOAM0967 putative Permease YjgP/YjgQ K07091 lptF; lipopolysaccharide export system permease protein
D CLOAM0966 putative Permease K11720 lptG; lipopolysaccharide export system permease protein
D CLOAM1759 lptB; putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CLOAM0956 hypothetical protein; putative membrane protein K09696 natB; sodium transport system permease protein
D CLOAM0955 ccmA; ABC-type multidrug transport system, ATPase component K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLOAM0622 nosY; ABC-type transport system involved in multi-copper enzyme maturation, permease component K25151 gldF; gliding motility-associated transport system permease protein
D CLOAM0621 ccmA1; ABC-type multidrug transport system, ATPase component K25152 gldA; gliding motility-associated transport system ATP-binding protein
D CLOAM0623 hypothetical protein; putative signal peptide K25153 gldG; gliding motility-associatede transport system auxiliary component
D CLOAM1268 hypothetical protein; putative membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D CLOAM0143 hypothetical protein; putative membrane protein K09808 lolC_E; lipoprotein-releasing system permease protein
D CLOAM1269 ABC transporter, ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-]
D CLOAM0084 ABC-type transport systems, involved in lipoprotein release, permease components K02004 ABC.CD.P; putative ABC transport system permease protein
D CLOAM1734 putative ABC-type transport systems, involved in lipoprotein release, permease components K02004 ABC.CD.P; putative ABC transport system permease protein
D CLOAM1897 putative ABC-type transport systems, involved in lipoprotein release, permease components K02004 ABC.CD.P; putative ABC transport system permease protein
D CLOAM0085 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLOAM1896 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLOAM1146 putative Na+ driven multidrug efflux pump K26937 dinF; MATE family, multidrug efflux pump
D CLOAM1538 putative MFS transporter family protein K06902 UMF1; MFS transporter, UMF1 family
D CLOAM1752 putative PEP-protein phosphotransferase of PTS system (enzyme I) K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CLOAM1753 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D CLOAM0343 hypothetical protein K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-]
D CLOAM1449 hypothetical protein; putative membrane protein K10716 kch; voltage-gated potassium channel
D CLOAM1406 hypothetical protein; putative membrane protein K07114 yfbK; Ca-activated chloride channel homolog
D CLOAM1407 BatA protein (fragment) K07114 yfbK; Ca-activated chloride channel homolog
D CLOAM0608 MotA/TolQ/ExbB proton channel family protein (modular protein) K03561 exbB; biopolymer transport protein ExbB
D CLOAM0991 MotA/TolQ/ExbB proton channel family protein (fragment) K03561 exbB; biopolymer transport protein ExbB
D CLOAM1739 hypothetical protein; putative membrane protein K03561 exbB; biopolymer transport protein ExbB
D CLOAM0990 hypothetical protein K03559 exbD; biopolymer transport protein ExbD
D CLOAM1791 Transporter K03284 corA; magnesium transporter
D CLOAM1233 CBS domain protein (modular protein) K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLOAM0176 putative CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLOAM0065 hypothetical protein; putative signal peptide K16092 btuB; vitamin B12 transporter
D CLOAM0087 hypothetical protein; putative signal peptide K12340 tolC; outer membrane protein
D CLOAM1493 hypothetical protein; putative signal peptide K07277 SAM50; outer membrane protein insertion porin family
D CLOAM0052 hypothetical protein; putative signal peptide K05807 bamD; outer membrane protein assembly factor BamD
D CLOAM1457 Trk-type K+ transport systems, membrane components (modular protein) K03498 trkH; trk/ktr system potassium uptake protein
D CLOAM1456 trkA; K+ transport systems, NAD-binding component K03499 trkA; trk/ktr system potassium uptake protein
D CLOAM0379 Chromate transporter K07240 chrA; chromate transporter
D CLOAM0380 Chromate transport protein K07240 chrA; chromate transporter
D CLOAM0742 putative Na/Pi cotransporter II-related K03324 yjbB; phosphate:Na+ symporter
D CLOAM1158 conserved hypothetical protein; putative membrane protein K03325 ACR3; arsenite transporter
D CLOAM0792 conserved hypothetical protein; putative membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D CLOAM0135 putative Auxin Efflux Carrier K24180 mleP; malate permease and related proteins
D CLOAM0783 ftsW; Essential cell division protein FtsW K03588 ftsW; cell division protein FtsW
D CLOAM0605 hypothetical protein K03832 tonB; periplasmic protein TonB
D CLOAM1022 hppA; Pyrophosphate-energized proton pump (Pyrophosphate-energized inorganic pyrophosphatase) (H+-PPase) (Membrane-bound proton-translocating pyrophosphatase) K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1]
D CLOAM1513 putative Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D CLOAM1771 putative S-Methylmalonyl-CoA decarboxylase,sodium-translocating subunit, beta chain K20509 madB; carboxybiotin decarboxylase [EC:7.2.4.1]
D CLOAM1715 putative S-methylmalonyl-CoA carboxyltransferase (Transcarboxylase) 12S subunit K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D CLOAM1768 putative S-Methylmalonyl-CoA decarboxylase, alpha chain K01604 mmdA; methylmalonyl-CoA decarboxylase subunit alpha [EC:7.2.4.3]
D CLOAM1033 hypothetical protein; putative signal peptide K03585 acrA; membrane fusion protein, multidrug efflux system
D CLOAM0434 putative Non-specific protein-tyrosine kinase K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3]
D CLOAM1905 feoB; Ferrous ion uptake system protein FeoB (predicted GTPase) K04759 feoB; ferrous iron transport protein B
C 02044 Secretion system [BR:caci02044]
D CLOAM0087 hypothetical protein; putative signal peptide K12340 tolC; outer membrane protein
D CLOAM0731 putative bifunctional prepilin leader peptidase and methylase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLOAM1401 putative Pilus biogenesis protein tapA precursor K02650 pilA; type IV pilus assembly protein PilA
D CLOAM1390 type IV pilus biogenesis protein PilB K02652 pilB; type IV pilus assembly protein PilB
D CLOAM1389 type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC
D CLOAM1396 putative type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
D CLOAM1392 hypothetical protein; putative signal peptide K02666 pilQ; type IV pilus assembly protein PilQ
D CLOAM1400 pilT-; twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D CLOAM0403 YGGT family protein (fragment) K02221 yggT; YggT family protein
D CLOAM1700 putative ComEA protein-related protein K02237 comEA; competence protein ComEA
D CLOAM1358 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D CLOAM0390 hypothetical protein; putative membrane protein K02238 comEC; competence protein ComEC
D CLOAM1732 secA; preprotein translocase secA subunit, essential ATPase protein K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLOAM1010 secD; protein-export membrane protein secD, accessory membrane protein K03072 secD; preprotein translocase subunit SecD
D CLOAM0462 secE; Preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D CLOAM1009 secF; protein-export membrane protein secF, accessory membrane protein K03074 secF; preprotein translocase subunit SecF
D CLOAM1170 secG; protein-export membrane protein secG, essential membrane protein K03075 secG; preprotein translocase subunit SecG
D CLOAM1120 secY; preprotein translocase secY subunit, essential membrane protein K03076 secY; preprotein translocase subunit SecY
D CLOAM1602 ffh; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLOAM0799 ftsY; Cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLOAM0006 yajC; Preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CLOAM0544 Preprotein translocase subunit YidC (modular protein) K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:caci02042]
D CLOAM1233 CBS domain protein (modular protein) K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLOAM0176 putative CBS domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:caci02022]
D CLOAM0876 putative sigma-54 dependent DNA-binding response regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX
C 02035 Bacterial motility proteins [BR:caci02035]
D CLOAM1400 pilT-; twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D CLOAM1401 putative Pilus biogenesis protein tapA precursor K02650 pilA; type IV pilus assembly protein PilA
D CLOAM1390 type IV pilus biogenesis protein PilB K02652 pilB; type IV pilus assembly protein PilB
D CLOAM1389 type IV pilus biogenesis protein PilC K02653 pilC; type IV pilus assembly protein PilC
D CLOAM0731 putative bifunctional prepilin leader peptidase and methylase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLOAM1392 hypothetical protein; putative signal peptide K02666 pilQ; type IV pilus assembly protein PilQ
D CLOAM1396 putative type IV pilus biogenesis protein PilM K02662 pilM; type IV pilus assembly protein PilM
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:caci04812]
D CLOAM0773 conserved hypothetical protein K06990 MEMO1; MEMO1 family protein
D CLOAM1807 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLOAM0778 ftsZ; Cell division protein FtsZ, tubulin-like GTP-binding protein and GTPase K03531 ftsZ; cell division protein FtsZ
D CLOAM0779 ftsA; Cell division and septation protein ftsA, ATPase domain K03590 ftsA; cell division protein FtsA
D CLOAM0277 soj protein K03496 parA; chromosome partitioning protein
D CLOAM0278 parB-like domain protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:caci04147]
D CLOAM1689 Chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CLOAM1651 eno; enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate hydro-lyase) K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLOAM1530 Glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLOAM1840 gapA; Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLOAM0802 pgk; 3-phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CLOAM1564 ahpC; Peroxiredoxin K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D CLOAM1649 groL; Cpn60 chaperonin GroEL, large subunit of GroESL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLOAM0757 dnaK; Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) K04043 dnaK; molecular chaperone DnaK
D CLOAM1751 pgi; Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLOAM1588 guaB; Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD) (Superoxide-inducible protein 12) (SOI12) K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CLOAM0464 tufB; protein chain elongation factor EF-Tu (duplicate of tufA) K02358 tuf; elongation factor Tu
D CLOAM0810 putative acetyl-CoA acetyltransferase with thiolase domain (YqeF) K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLOAM1471 ahcY; S-adenosyl-L-homocysteine hydrolase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1]
D CLOAM1458 adk; Adenylate kinase (ATP-AMP transphosphorylase) K00939 adk; adenylate kinase [EC:2.7.4.3]
D CLOAM0177 ftcd; Formimidoyltransferase-cyclodeaminase (Formiminotransferase-cyclodeaminase) (FTCD) [Includes: Glutamate formimidoyltransferase (Glutamate formiminotransferase) (Glutamate formyltransferase); Formimidoyltetrahydrofolate cyclodeaminase (Formiminotetrahydrofolate cyclodeaminase)] K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase [EC:2.1.2.5 4.3.1.4]
D CLOAM0630 glnA; glutamine synthetase (glutamate--ammonia ligase) K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLOAM1772 serA; D-3-phosphoglycerate dehydrogenase (PGDH) K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLOAM1899 purH; Bifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (AICAR transformylase); IMP cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)] K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLOAM1756 lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLOAM1668 tpiA; Triosephosphate isomerase (TIM) (Triose-phosphate isomerase) K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLOAM0341 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:caci02048]
D CLOAM0855 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D CLOAM1290 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1
D CLOAM0856 conserved hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D CLOAM1289 conserved hypothetical protein K09951 cas2; CRISPR-associated protein Cas2
D CLOAM1291 putative CRISPR-associated helicase Cas3, core K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D CLOAM1288 conserved hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D CLOAM1294 hypothetical protein K19114 csh1; CRISPR-associated protein Csh1
D CLOAM1293 conserved hypothetical protein K19115 csh2; CRISPR-associated protein Csh2
D CLOAM1292 conserved hypothetical protein K19116 cas5h; CRISPR-associated protein Cas5h
D CLOAM0841 hypothetical protein K07016 csm1; CRISPR-associated protein Csm1
D CLOAM0843 conserved hypothetical protein K09002 csm3; CRISPR-associated protein Csm3
D CLOAM0844 hypothetical protein K19139 csm4; CRISPR-associated protein Csm4
D CLOAM0845 hypothetical protein K19140 csm5; CRISPR-associated protein Csm5
D CLOAM0220 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CLOAM0489 conserved hypothetical protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CLOAM0219 putative Type I restriction-modification system specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CLOAM0217 Type I restriction-modification system methyltransferase subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CLOAM0488 Restriction modification system DNA specificity domain:N-6 DNA methylase:Type I restriction-modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CLOAM0204 N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0203 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0502 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0503 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM1327 Modification methylase MjaIII (Adenine-specific methyltransferase MjaIII) (M.MjaIII) K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CLOAM0937 conserved hypothetical protein K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CLOAM0337 putative Modification methylase TaqI (Adenine-specific methyltransferase TaqI) (M.TaqI) K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CLOAM1838 BstYI methyltransferase K07319 yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CLOAM0155 Modification methylase (fragment) K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D CLOAM0148 DNA methylase N-4/N-6 K24451 zim; modification methylase
D CLOAM1257 Type II restriction modification system,methylation subunit K24451 zim; modification methylase
D CLOAM0150 putative Modification methylase MjaI (N-4 cytosine-specific methyltransferase MjaI) (M.MjaI) K24451 zim; modification methylase
D CLOAM1103 Modification methylase, type III R/M system K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CLOAM1864 conserved hypothetical protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D CLOAM0778 ftsZ; Cell division protein FtsZ, tubulin-like GTP-binding protein and GTPase K03531 ftsZ; cell division protein FtsZ
D CLOAM1807 mreB; cell wall structural complex MreBCD, actin-like component MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLOAM1691 iscS; Cysteine desulfurase (ThiI transpersulfidase) (NifS protein homolog) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:caci01504]
D CLOAM1033 hypothetical protein; putative signal peptide K03585 acrA; membrane fusion protein, multidrug efflux system
D CLOAM0087 hypothetical protein; putative signal peptide K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:caci03100]
D CLOAMtRNA28 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLOAMtRNA46 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLOAMtRNA6 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLOAMtRNA26 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLOAMtRNA8 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLOAMtRNA16 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLOAMtRNA10 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLOAMtRNA35 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLOAMtRNA4 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLOAMtRNA44 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLOAMtRNA40 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLOAMtRNA32 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLOAMtRNA34 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLOAMtRNA37 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLOAMtRNA22 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLOAMtRNA36 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLOAMtRNA21 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLOAMtRNA20 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLOAMtRNA24 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLOAMtRNA25 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLOAMtRNA5 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLOAMtRNA14 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLOAMtRNA7 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLOAMtRNA1 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLOAMtRNA41 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLOAMtRNA42 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CLOAMtRNA39 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLOAMtRNA19 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLOAMtRNA18 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLOAM_23s_1 ribosomal RNA 23s K01980 23SrRNA; 23S ribosomal RNA
D CLOAM_5s_1 ribosomal RNA 5s K01985 5SrRNA; 5S ribosomal RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CLOAM1731 putative NADH-dependent butanol dehydrogenase K19955 adh2; alcohol dehydrogenase [EC:1.1.1.-]
D CLOAM0722 putative dehydrogenase, 2Fe-2S ferredoxin-like subunit, small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D CLOAM1596 putative dehydrogenase, 2Fe-2S ferredoxin-like subunit, small chain K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D CLOAM1597 putative dehydrogenase, FAD binding subunit,medium chain K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3]
D CLOAM1038 iorA; indolepyruvate ferredoxin oxidoreductase, alpha chain K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D CLOAM1037 iorB; indolepyruvate ferredoxin oxidoreductase, beta chain K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D CLOAM1184 putative ferredoxin, 2Fe-2S (thioredoxin-like [2Fe-2S] ferredoxin) (hymB-like partial match) K17992 hndB; NADP-reducing hydrogenase subunit HndB [EC:1.12.1.3]
D CLOAM1183 hymB; [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3]
D CLOAM1181 putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like) K18331 hndC; NADP-reducing hydrogenase subunit HndC [EC:1.12.1.3]
D CLOAM1366 dfx; rubredoxin-dependent superoxide reductase (SOR) (desulfoferrodoxin) K05919 dfx; superoxide reductase [EC:1.15.1.2]
D CLOAM0902 putative enzyme with radical SAM domain K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLOAM1254 putative anaerobic ribonucleotide reductase activating enzyme (NrdG) K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLOAM1515 putative enzyme with radical SAM domain protein (Fe-S protein) K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLOAM1167 pcm; L-isoaspartate protein carboxylmethyltransferase type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D CLOAM0318 putative Apolipoprotein N-acyltransferase precursor K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D CLOAM0019 putative acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270]
D CLOAM0212 hypothetical protein K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D CLOAM0105 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CLOAM0809 putative Glutamate-1-semialdehyde 2,1-aminomutase (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) K21585 kat; 3-aminobutanoyl-CoA transaminase [EC:2.6.1.111]
D CLOAM0915 putative ApbE-like lipoprotein precursor K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D CLOAM1200 RNA-directed DNA polymerase (Reverse transcriptase) K00986 ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]
D CLOAM0987 conserved hypothetical protein K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D CLOAM1754 hprK; HPr kinase/phosphorylase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D CLOAM1594 putative Formyl-CoA transferase K18702 uctC; CoA:oxalate CoA-transferase [EC:2.8.3.19]
D CLOAM1829 ymdB; conserved hypothetical protein K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D CLOAM0261 conserved hypothetical protein; putative thioesterase domain K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CLOAM1321 putative capsular polysaccharide biosynthesis homolog ywqE K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D CLOAM1027 putative PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D CLOAM1231 hypothetical protein; putative membrane protein K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D CLOAM0419 hypothetical protein K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CLOAM1263 tatD; Mg-dependent DNase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CLOAM1654 putative Micrococcal nuclease K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D CLOAM0215 Chain A, D20c mutant of T4 lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D CLOAM0490 Chain A, D20c mutant of T4 lysozyme K01185 E3.2.1.17; lysozyme [EC:3.2.1.17]
D CLOAM0007 def; polypeptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CLOAM0687 conserved hypothetical protein; putative polysaccharide deacetylase domain K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D CLOAM0339 putative endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CLOAM1325 MoxR family protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D CLOAM1410 MoxR family protein K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D CLOAM1674 putative predicted sugar kinase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CLOAM0918 hgdC; Activator of (R)-2-hydroxyglutaryl-CoA dehydratase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLOAM0672 hypothetical protein K17810 asl; D-aspartate ligase [EC:6.3.1.12]
D CLOAM0864 Capsule biosynthesis protein CapB K01932 capB; gamma-polyglutamate synthase [EC:6.3.2.-]
D CLOAM1527 rnfD; electron transport complex protein rnfD K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D CLOAM1528 electron transport complex protein rnfC, NAD and 4Fe-4S binding subunit (rnfC fragment) K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D CLOAM1523 electron transport complex protein rnfB,polyferredoxin subunit (rnfB module) K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D CLOAM0754 Cation transport ATPase K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D CLOAM0745 cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
C 99982 Energy metabolism
D CLOAM1600 FdrA K02381 fdrA; FdrA protein
D CLOAM1526 RnfG; electron transport complex protein rnfG; FMN-binding domain K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D CLOAM1525 rnfE; electron transport complex protein rnfE K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D CLOAM1524 rnfA; electron transport complex protein rnfA K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D CLOAM0163 predicted enzyme with a TIM-barrel fold K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D CLOAM1324 hypothetical protein; putative membrane protein K07027 K07027; glycosyltransferase 2 family protein
C 99987 Cofactor metabolism
D CLOAM1488 putative Molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D CLOAM1335 cold-shock domain family protein K03704 cspA; cold shock protein
C 99974 Translation
C 99975 Protein processing
D CLOAM1084 hypothetical protein K03545 tig; trigger factor
D CLOAM1778 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CLOAM1782 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
D CLOAM0713 conserved hypothetical protein K07397 yhfA; putative redox protein
D CLOAM1179 putative MPT insertase (molybdopyranopterin monophosphate insertase) (Xanthine dehydrogenase accessory protein) (chaperone XdhC) (XdhC) K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D CLOAM0117 DNA recombination protein rmuC homolog K09760 rmuC; DNA recombination protein RmuC
D CLOAM0487 conserved hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family
D CLOAM1743 conserved hypothetical protein K07460 yraN; putative endonuclease
D CLOAM0121 DNA processing protein DprA, putative (fragment) K04096 smf; DNA processing protein
D CLOAM1378 ATPase, AAA family K07478 ycaJ; putative ATPase
D CLOAM0144 hypothetical protein K07483 K07483; transposase
D CLOAM0563 hypothetical protein K07491 rayT; REP-associated tyrosine transposase
D CLOAM0588 transposase (fragment) K07491 rayT; REP-associated tyrosine transposase
D CLOAM0695 transposase (fragment) K07491 rayT; REP-associated tyrosine transposase
D CLOAM0233 hypothetical protein K07497 K07497; putative transposase
D CLOAM0476 hypothetical protein K07497 K07497; putative transposase
D CLOAM0145 Integrase, catalytic domain (fragment) K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D CLOAM0449 conserved hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CLOAM0136 putative low-affinity inorganic phosphate transporter (pitA-like) K03306 TC.PIT; inorganic phosphate transporter, PiT family
C 99978 Cell growth
D CLOAM0543 predicted RNA-binding protein (modular protein) K06346 jag; spoIIIJ-associated protein
D CLOAM1618 hypothetical protein K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
C 99993 Cell motility
C 99995 Signaling proteins
D CLOAM0883 phoH family protein K07175 phoH2; PhoH-like ATPase
C 99992 Structural proteins
D CLOAM1383 hypothetical protein; putative signal peptide K06142 hlpA; outer membrane protein
D CLOAM0865 Capsule biosynthesis protein CapC K22116 capC; gamma-polyglutamate biosynthesis protein CapC
D CLOAM0620 hypothetical protein; putative signal peptide K02005 ABC.CD.TX; HlyD family secretion protein
D CLOAM0086 putative efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D CLOAM1477 conserved hypothetical protein; putative membrane protein K11744 tqsA; AI-2 transport protein TqsA
C 99994 Others
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CLOAM1823 hypothetical protein; putative membrane protein K03558 cvpA; membrane protein required for colicin V production
D CLOAM1879 Putative ATP dependant helicase yprA K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D CLOAM0954 putative Patatin K07001 K07001; NTE family protein
D CLOAM1013 hypothetical protein; putative signal peptide K07001 K07001; NTE family protein
D CLOAM1898 hypothetical protein; putative membrane protein K07058 K07058; membrane protein
D CLOAM1213 conserved hypothetical protein; putative LemA family protein K03744 lemA; LemA protein
C 99997 Function unknown
D CLOAM1452 conserved hypothetical protein K06872 K06872; uncharacterized protein
D CLOAM1835 conserved hypothetical protein K06921 K06921; uncharacterized protein
D CLOAM0940 putative Abortive infection protein K06926 K06926; uncharacterized protein
D CLOAM1466 KH domain protein K06960 K06960; uncharacterized protein
D CLOAM0977 putative Membrane protein, precursor K07090 K07090; uncharacterized protein
D CLOAM1858 hypothetical protein K07164 K07164; uncharacterized protein
D CLOAM0545 conserved hypothetical protein K08998 K08998; uncharacterized protein
D CLOAM1810 hypothetical protein; putative signal peptide K09005 K09005; uncharacterized protein
D CLOAM1871 conserved hypothetical protein K09129 K09129; uncharacterized protein
D CLOAM0772 conserved hypothetical protein K09141 K09141; uncharacterized protein
D CLOAM0394 conserved hypothetical protein K09163 K09163; uncharacterized protein
D CLOAM0674 conserved hypothetical protein K09726 K09726; uncharacterized protein
D CLOAM0009 hypothetical protein; putative membrane protein K09729 K09729; uncharacterized protein
D CLOAM0826 hypothetical protein K09749 K09749; uncharacterized protein
D CLOAM1637 conserved hypothetical protein K09797 K09797; uncharacterized protein
D CLOAM1042 hypothetical protein K09798 K09798; uncharacterized protein
D CLOAM1809 conserved hypothetical protein K09798 K09798; uncharacterized protein
D CLOAM0186 conserved hypothetical protein K01163 K01163; uncharacterized protein
D CLOAM1664 conserved hypothetical protein K07502 yprB; uncharacterized protein
D CLOAM0137 conserved hypothetical protein K07220 K07220; uncharacterized protein
D CLOAM0264 hypothetical protein K07742 ylxR; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 15, 2024