+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidatus Cloacimonas acidaminovorans

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CLOAM1461 Methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CLOAM0039 putative endonuclease III (nth-like) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CLOAM0327 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CLOAM1461 Methylated-DNA--protein-cysteine methyltransferase (6-O-methylguanine-DNA methyltransferase) (MGMT) (O-6-methylguanine-DNA-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CLOAM0287 ung; Uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CLOAM1877 putative formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CLOAM0039 putative endonuclease III (nth-like) K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CLOAM1175 xthA; Exonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E CLOAM0321 putative ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CLOAM1265 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E CLOAM0971 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A E CLOAM0820 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B E CLOAM0765 hypothetical protein K03703 uvrC; excinuclease ABC subunit C E CLOAM0791 Excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E CLOAM0549 uvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLOAM0486 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CLOAM0456 rpoB; RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CLOAM0455 rpoC; RNA polymerase, beta' subunit; binds Zn(II) K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CLOAM1113 rpoA; DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CLOAM0548 putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CLOAM0950 DNA mismatch repair protein K03555 mutS; DNA mismatch repair protein MutS E CLOAM1824 putative recombination and DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2 E CLOAM0391 hypothetical protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E CLOAM1302 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CLOAM0245 xseA; Exonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CLOAM0325 xseB; Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CLOAM1746 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CLOAM1536 putative DNA polymerase III, beta chain (dnaN-like) K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CLOAM1040 putative DNA polymerase III, delta subunit (holA-like) K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CLOAM0793 putative DNA polymerase III, delta prime subunit (holB-like) K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CLOAM1210 DNA polymerase III, gamma/tau subunits (fragment) K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CLOAM0549 uvrD; Superfamily I DNA and RNA helicases K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLOAM0486 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLOAM1609 Single-stranded DNA-binding protein (modular protein) K03111 ssb; single-strand DNA-binding protein E CLOAM0204 N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CLOAM0203 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CLOAM0502 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CLOAM0503 putative N6 adenine-specific DNA methyltransferase, D12 class K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CLOAM1327 Modification methylase MjaIII (Adenine-specific methyltransferase MjaIII) (M.MjaIII) K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CLOAM1869 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E CLOAM0929 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CLOAM1679 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CLOAM0930 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CLOAM0274 Primosomal protein n K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E CLOAM1869 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA E CLOAM0710 radA; DNA repair protein radA homolog (DNA repair protein sms homolog); putative ATP-dependent protease, with nucleoside triP hydrolase and multiheme cytochrome domains K04485 radA; DNA repair protein RadA/Sms E CLOAM1537 putative putative DNA repair and genetic recombination (recF-like) K03629 recF; DNA replication and repair protein RecF E CLOAM1698 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CLOAM0321 putative ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CLOAM1265 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CLOAM1059 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E CLOAM0450 recR; recombination protein RecR K06187 recR; recombination protein RecR E CLOAM0036 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CLOAM0929 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CLOAM1679 ruvB; Holliday junction helicase, subunit B K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CLOAM0930 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E CLOAM0855 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 E CLOAM1290 conserved hypothetical protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CLOAM1331 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CLOAM1332 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CLOAM1733 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CLOAM0973 hupA; HU, DNA-binding transcriptional regulator, alpha subunit K03530 hupB; DNA-binding protein HU-beta F CLOAM1727 DNA-binding protein HU (DNA-binding protein II) (TL29) K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CLOAM0321 putative ssDNA exonuclease, 5'--> 3'-specific K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CLOAM1265 hypothetical protein K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CLOAM1059 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F CLOAM0450 recR; recombination protein RecR K06187 recR; recombination protein RecR F CLOAM0968 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F CLOAM0971 uvrA; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC K03701 uvrA; excinuclease ABC subunit A F CLOAM0820 uvrB; excinulease of nucleotide excision repair, DNA damage recognition component K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CLOAM0980 dinP; Nucleotidyltransferase/DNA polymerase involved in DNA repair K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CLOAM0776 Protein umuC K03502 umuC; DNA polymerase V D CLOAM0975 Protein umuD [Contains: Protein umuD'] K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D CLOAM1869 recA; DNA strand exchange and recombination protein with protease and nuclease activity K03553 recA; recombination protein RecA D CLOAM0036 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CLOAM1609 Single-stranded DNA-binding protein (modular protein) K03111 ssb; single-strand DNA-binding protein D CLOAM1868 hypothetical protein K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CLOAM1545 putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (dnaQ-like) (DinG-like helicase) K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D CLOAM0327 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CLOAM0913 putative B12-dependent ribonucleoside-diphosphate/-triphosphate reductase (nrdJ-like) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C Others D CLOAM0268 hypothetical protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024