+E Transcription factors KO
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Transcription Factors - Clostridium acetobutylicum DSM 1731
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D SMB_G1242 scrFIBM; DNA-methyltransferase (cytosine-specific) K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D SMB_G1526 bsp6IM; DNA-methyltransferase (cytosine-specific), BSP6I Bsubtilis K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D SMB_G0435 transcriptional regulator K13653 K13653; AraC family transcriptional regulator
C LysR family
D SMB_G3504 citR; LysR family transcriptional regulator K19242 citR; LysR family transcriptional regulator, repressor for citA
D SMB_G0094 cysL; LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
C DeoR family
D SMB_G2986 lacR; lactose phosphotransferase system repressor lacR K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D SMB_G2991 lacR; lactose phosphotransferase system repressor lacR K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D SMB_G3002 lacR; lactose phosphotransferase system repressor lacR K02530 lacR; DeoR family transcriptional regulator, lactose phosphotransferase system repressor
D SMB_G0236 transcripcional regulator of sugar metabolism K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D SMB_G1429 sugar metabolism transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D SMB_G2895 spoIIID; stage III sporulation protein D, SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
C LacI family
D SMB_G0368 transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMB_G2998 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMB_G3073 ccpA; transcription regulator LacI K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D SMB_G0401 kdgR; KDG operon repressor K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D SMB_G0707 LacI family transcription regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D SMB_G1363 araR; LacI family transcription regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D SMB_G0194 yvoA; GntR family transcription regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D SMB_G3540 yurK; FadR family transcriptional regulator K03710 K03710; GntR family transcriptional regulator
D SMB_G2581 lldR; FadR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
C TetR/AcrR family
D SMB_P086 TetR/AcrR family transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon
D SMB_G3382 yxaF; AcrR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
D SMB_G2506 TetR/AcrR family transcriptional regulator K21453 icaR; TetR/AcrR family transcriptional regulator, biofilm operon repressor
C Lrp/AsnC family
D SMB_G0994 asnC; Lpr family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D SMB_G1492 lrpC; Lpr family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
C MarR family
D SMB_G2521 MarR family transcriptional regulator K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D SMB_G1594 ohrR; MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D SMB_G0782 adhR; MerR transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D SMB_G1707 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D SMB_G2669 ferric uptake regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
C CRP/FNR family
D SMB_P081 crp; CRP (cyclic AMP receptor protein) regulatory protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D SMB_G1536 fnr; FNR-like catabolite activator protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
D SMB_G2269 hypothetical protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D SMB_G1700 iscR; transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D SMB_P101 arsr; ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D SMB_G2275 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
C PadR family
D SMB_G3407 transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D SMB_G0584 yizB; transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D SMB_P151 transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D SMB_G1494 mntR; Iron-dependent transcription repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D SMB_G2651 iron-dependent transcription repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D SMB_G0543 glvR; RpiR family transcriptional regulator K03481 glvR; RpiR family transcriptional regulator, glv operon transcriptional regulator
D SMB_G3476 blaI; BlaI/MecI subfamily transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D SMB_G0217 birA; biotin-(acetyl-CoA carboxylase)ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SMB_G0603 birA; biotin-(acetyl-CoA carboxylase)ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D SMB_G2088 transcriptional regulator K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D SMB_G3261 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D SMB_G2869 hypothetical protein K02647 cdaR; carbohydrate diacid regulator
D SMB_G2748 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D SMB_G1811 codY; transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D SMB_G2587 CRO family transcriptional regulator K07727 K07727; putative transcriptional regulator
D SMB_G1488 transcriptional regulator K07729 K07729; putative transcriptional regulator
D SMB_G2508 transcriptional regulator K07729 K07729; putative transcriptional regulator
D SMB_G2530 transcriptional regulator K07729 K07729; putative transcriptional regulator
D SMB_G3361 transcriptional regulator K07729 K07729; putative transcriptional regulator
D SMB_G1894 transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D SMB_G0503 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D SMB_G0431 licT; transcriptional antiterminator licT K03488 licT; beta-glucoside operon transcriptional antiterminator
D SMB_G1431 BglG family transcriptional antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator
D SMB_G0582 sacT; SACPA operon antiterminator (sacT) K03480 glcT; transcriptional antiterminator
D SMB_G1378 glcT; BglG family transcriptional antiterminator K03480 glcT; transcriptional antiterminator
D SMB_G0157 mtlR; putative regulator of the PTS system for mannitol, MltR K03483 mtlR; mannitol operon transcriptional activator
C Others
D SMB_G3697 csoR; hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D SMB_G2301 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D SMB_G0316 stationary/sporulation regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D SMB_G1970 abrB; transcription regulator AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D SMB_G3688 transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D SMB_G3690 spoVT; stage V sporulation protein T transcriptional regulator AbrB-like protein K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D SMB_G3251 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D SMB_G3772 spo0J; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SMB_G3774 spoOJ; stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D SMB_G1343 glpP; glycerol-3-phosphate responsive antiterminator (mRNA-binding), GLPP K02443 glpP; glycerol uptake operon antiterminator
D SMB_G2107 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D SMB_G1301 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D SMB_G3228 ctsR; transciptional regulator CTSR K03708 ctsR; transcriptional regulator of stress and heat shock response
D SMB_G0722 putative transcriptional regulator K05311 cggR; central glycolytic genes regulator
D SMB_G2146 pyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D SMB_G1723 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D SMB_G2166 mraZ; cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 29, 2024
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Classification taken and modified from TRANSFAC 7.0