+F Repair protein KO #

  DNA Repair and Recombination Proteins - Capnocytophaga sp. FDAARGOS_737

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D FOC45_07700 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E FOC45_04095 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E FOC45_11395 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E FOC45_05205 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D FOC45_10525 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D FOC45_07700 methylated-DNA--[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E FOC45_04095 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E FOC45_11395 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E FOC45_05205 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E FOC45_01650 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E FOC45_01855 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E FOC45_07970 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E FOC45_11210 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E FOC45_02570 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E FOC45_03755 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E FOC45_01420 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E FOC45_09250 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E FOC45_05850 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FOC45_11210 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E FOC45_07970 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F FOC45_01600 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F FOC45_09450 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F FOC45_10105 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F FOC45_03730 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E FOC45_11460 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E FOC45_06025 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E FOC45_03410 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E FOC45_02015 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E FOC45_08205 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E FOC45_09480 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E FOC45_09815 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E FOC45_05440 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E FOC45_04180 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E FOC45_06615 dnaX; DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E FOC45_07970 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E FOC45_05850 AAA family ATPase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E FOC45_04695 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E FOC45_11400 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E FOC45_00550 DUF3127 domain-containing protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E FOC45_00040 recA; recombinase RecA K03553 recA; recombination protein RecA E FOC45_02075 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E FOC45_02465 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E FOC45_05455 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E FOC45_04085 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E FOC45_03645 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E FOC45_09525 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E FOC45_00040 recA; recombinase RecA K03553 recA; recombination protein RecA E FOC45_08095 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E FOC45_10055 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E FOC45_07365 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E FOC45_11530 AAA family ATPase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E FOC45_01855 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E FOC45_05895 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E FOC45_05510 recR; recombination protein RecR K06187 recR; recombination protein RecR E FOC45_05855 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E FOC45_02075 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E FOC45_02465 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E FOC45_05455 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E FOC45_03645 AAA family ATPase K03546 sbcC; DNA repair protein SbcC/Rad50 E FOC45_09525 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 E FOC45_05875 DUF853 family protein K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F FOC45_06635 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F FOC45_08805 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F FOC45_08775 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F FOC45_01840 integration host factor subunit beta K03530 hupB; DNA-binding protein HU-beta F FOC45_03685 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F FOC45_01855 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F FOC45_05895 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F FOC45_05510 recR; recombination protein RecR K06187 recR; recombination protein RecR F FOC45_07970 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F FOC45_05500 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F FOC45_06075 RecQ family ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F FOC45_02570 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F FOC45_03755 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F FOC45_01420 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D FOC45_09350 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D FOC45_00040 recA; recombinase RecA K03553 recA; recombination protein RecA D FOC45_05855 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D FOC45_04695 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D FOC45_11400 ssb; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D FOC45_00550 DUF3127 domain-containing protein K03111 ssb; single-strand DNA-binding protein D FOC45_10540 dinD; DNA damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D FOC45_11615 dinD; DNA damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D D FOC45_11255 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D FOC45_10525 dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D FOC45_05625 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D FOC45_05220 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D FOC45_05615 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D FOC45_10815 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D FOC45_06045 bifunctional oligoribonuclease/PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024