+F Repair protein KO #

  DNA Repair and Recombination Proteins - Candidatus Paracaedimonas acanthamoebae

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D IM40_03390 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D IM40_01215 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E IM40_06475 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E IM40_04290 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E IM40_06620 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D IM40_00370 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IM40_08810 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IM40_03345 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IM40_01625 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D IM40_03390 hypothetical protein K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D IM40_01560 cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D IM40_01215 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E IM40_06475 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E IM40_04290 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E IM40_03010 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E IM40_00715 hypothetical protein K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E IM40_06620 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E IM40_07655 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E IM40_03670 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E IM40_00240 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E IM40_05410 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E IM40_03610 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E IM40_03525 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IM40_00240 DNA polymerase K02335 polA; DNA polymerase I [EC:2.7.7.7] E IM40_03670 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F IM40_06215 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F IM40_06210 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F IM40_02140 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F IM40_06355 hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F IM40_01885 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E IM40_07050 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D Molecular matchmaker E IM40_00925 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E IM40_06915 hypothetical protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E IM40_03635 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E IM40_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E IM40_01250 hypothetical protein K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] E IM40_05240 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E IM40_09055 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D DNA ligase E IM40_03670 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E IM40_03525 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E IM40_02945 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E IM40_08215 recombinase RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E IM40_10845 recombinase RecD K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E IM40_01355 recombinase RecA K03553 recA; recombination protein RecA E IM40_06715 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E IM40_06720 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D RecFOR pathway proteins E IM40_01355 recombinase RecA K03553 recA; recombination protein RecA E IM40_04655 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E IM40_00015 hypothetical protein K03629 recF; DNA replication and repair protein RecF E IM40_00060 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E IM40_08725 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E IM40_04185 recombinase RecR K06187 recR; recombination protein RecR E IM40_03675 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) E IM40_06715 hypothetical protein K03550 ruvA; holliday junction DNA helicase RuvA E IM40_06720 Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E IM40_06945 hypothetical protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E IM40_06950 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F IM40_02940 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F IM40_00020 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F IM40_06525 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F IM40_09835 hypothetical protein K03530 hupB; DNA-binding protein HU-beta F IM40_09980 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F IM40_10615 hypothetical protein K03530 hupB; DNA-binding protein HU-beta F IM40_03775 hypothetical protein K03530 hupB; DNA-binding protein HU-beta F IM40_11320 hypothetical protein K03530 hupB; DNA-binding protein HU-beta F IM40_05210 transcriptional regulator HU subunit alpha K03530 hupB; DNA-binding protein HU-beta F IM40_06285 hypothetical protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F IM40_08725 hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F IM40_04185 recombinase RecR K06187 recR; recombination protein RecR F IM40_03670 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F IM40_05940 hypothetical protein K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein F IM40_02955 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F IM40_04190 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F IM40_05410 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D IM40_09345 hypothetical protein K03502 umuC; DNA polymerase V D IM40_10175 hypothetical protein K03502 umuC; DNA polymerase V D IM40_10760 hypothetical protein K03502 umuC; DNA polymerase V D IM40_05790 hypothetical protein K03502 umuC; DNA polymerase V D IM40_09340 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D IM40_10180 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D IM40_10755 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D IM40_10975 hypothetical protein K03503 umuD; DNA polymerase V [EC:3.4.21.-] D IM40_01390 DNA polymerase V K03503 umuD; DNA polymerase V [EC:3.4.21.-] C Other SOS response factors D IM40_01355 recombinase RecA K03553 recA; recombination protein RecA D IM40_03675 hypothetical protein K03631 recN; DNA repair protein RecN (Recombination protein N) D IM40_02945 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D IM40_00370 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IM40_08810 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IM40_03345 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D IM40_01625 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D IM40_04390 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D IM40_10435 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D IM40_10440 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024