+D Transcription factors KO #

  Transcription Factors - Collimonas arenae

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D LT85_0020 Modification methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D LT85_0993 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D LT85_2540 hypothetical protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D LT85_1783 Transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D LT85_1309 transcriptional regulator K13652 K13652; AraC family transcriptional regulator D LT85_4205 putative transcription regulator protein K13652 K13652; AraC family transcriptional regulator D LT85_1258 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D LT85_4913 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D LT85_3176 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K17736 cdhR; AraC family transcriptional regulator, carnitine catabolism transcriptional activator D LT85_1453 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator D LT85_1476 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain K21826 gbdR; AraC family transcriptional regulator, glycine betaine-responsive activator C LysR family D LT85_0092 gcvA; Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_0649 gcvA; Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_0815 Glycine cleavage system transcriptional activator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_1362 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_1427 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_1464 gcvA; Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_2662 hypothetical protein co-occurring with RecR K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_4355 Transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_4775 gcvA; Glycine cleavage system transcriptional activator GcvA K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D LT85_1865 metR; Transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D LT85_3215 metR; Transcriptional activator MetR K03576 metR; LysR family transcriptional regulator, regulator for metE and metH D LT85_0839 Hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D LT85_0548 Chromosome initiation inhibitor K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor D LT85_4248 Cyn operon transcriptional activator K11921 cynR; LysR family transcriptional regulator, cyn operon transcriptional activator D LT85_4024 cysB; Cys regulon transcriptional activator CysB K13634 cysB; LysR family transcriptional regulator, cys regulon transcriptional activator D LT85_1558 Alkanesulfonate utilization operon LysR-family regulator CbI K13635 cbl; LysR family transcriptional regulator, cys regulon transcriptional activator D LT85_2498 LysR-family transcriptional regulator K14057 abgR; LysR family transcriptional regulator, regulator of abg operon D LT85_2415 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme K16135 dmlR; LysR family transcriptional regulator, transcriptional activator for dmlA D LT85_3782 ybhD; LysR family transcriptional regulator YbhD K17737 dhcR; LysR family transcriptional regulator, carnitine catabolism transcriptional activator D LT85_3389 Glycine cleavage system transcriptional activator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D LT85_0357 Transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D LT85_1957 putative transcription regulator protein of MDR efflux pump cluster K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D LT85_2441 Transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D LT85_2510 LysR family transcriptional regulator K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D LT85_3684 putative transcription regulator protein of MDR efflux pump cluster K18900 bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC D LT85_0266 Transcriptional regulator K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D LT85_3226 LysR family regulatory protein K19338 nac; LysR family transcriptional regulator, nitrogen assimilation regulatory protein D LT85_4536 Transcriptional regulator K21645 hypT; LysR family transcriptional regulator, hypochlorite-specific transcription factor HypT D LT85_2631 cysB; Cys regulon transcriptional activator CysB K21703 cbbR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator D LT85_0147 Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family) K21757 benM; LysR family transcriptional regulator, benzoate and cis,cis-muconate-responsive activator of ben and cat genes C DeoR family D LT85_0827 Glycerol-3-phosphate regulon repressor K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D LT85_1349 Xylose activator XylR (AraC family) K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LT85_1629 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LT85_4664 Ribose operon repressor K02529 galR; LacI family transcriptional regulator, galactose operon repressor D LT85_0766 Transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D LT85_0826 Transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D LT85_4981 Gluconate utilization system Gnt-I transcriptional repressor K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D LT85_2255 Histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D LT85_1580 putative transcriptional regulator of N-Acetylglucosamine utilization K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D LT85_2902 Putative alkanesulfonate metabolism utilization regulator K03710 K03710; GntR family transcriptional regulator D LT85_4884 Transcriptional regulator K03710 K03710; GntR family transcriptional regulator D LT85_2595 Transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D LT85_4737 Transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D LT85_4941 Transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase C TetR/AcrR family D LT85_3662 betI; HTH-type transcriptional regulator BetI K02167 betI; TetR/AcrR family transcriptional regulator, transcriptional repressor of bet genes D LT85_0925 Transcription repressor of multidrug efflux pump acrAB operon K03577 acrR; TetR/AcrR family transcriptional regulator, acrAB operon repressor D LT85_4627 slmA; Transcriptional regulator SlmA K05501 slmA; TetR/AcrR family transcriptional regulator D LT85_2406 Transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator D LT85_0083 Transcriptional regulator K19736 aefR; TetR/AcrR family transcriptional regulator, regulator of autoinduction and epiphytic fitness D LT85_0073 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D LT85_2009 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D LT85_3241 Transcriptional regulator K16137 nemR; TetR/AcrR family transcriptional regulator, transcriptional repressor for nem operon D LT85_1415 Transcriptional regulator K16138 uidR; TetR/AcrR family transcriptional regulator, repressor for uid operon C Lrp/AsnC family D LT85_0365 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_0963 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_1076 Putative HTH-type transcriptional regulator ybaO K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_1719 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_2803 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_3194 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_3745 Transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_3771 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_4573 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_4703 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_4819 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_4977 Leucine-responsive regulatory protein K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D LT85_0931 Transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D LT85_3040 Transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family C MarR family D LT85_2992 Transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D LT85_0317 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D LT85_1092 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D LT85_4257 Organic hydroperoxide resistance transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D LT85_1208 Mercuric resistance operon regulatory protein K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D LT85_1613 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D LT85_3264 soxR; Redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D LT85_4403 Ferric uptake regulation protein FUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D LT85_4593 Zinc uptake regulation protein ZUR K03711 fur; Fur family transcriptional regulator, ferric uptake regulator C IclR family D LT85_0149 Transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D LT85_1750 Transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D LT85_1780 Transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D LT85_1912 Transcriptional regulator K02624 pcaR; IclR family transcriptional regulator, pca regulon regulatory protein D LT85_0077 Transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D LT85_2342 transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D LT85_4632 transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D LT85_2623 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase K21563 dnr; CRP/FNR family transcriptional regulator, dissimilatory nitrate respiration regulator C Rrf2 family D LT85_1416 iscR; Iron-sulfur cluster regulator IscR K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor D LT85_2207 nsrR; Nitrite-sensitive transcriptional repressor NsrR K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D LT85_2967 Transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family C PadR family C Other families D LT85_3316 transcriptional regulator K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D LT85_4790 Biotin operon repressor / Biotin-protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D LT85_4504 DNA-binding protein Fis K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D LT85_3290 prpR; Propionate catabolism operon regulatory protein PrpR K02688 prpR; transcriptional regulator, propionate catabolism operon regulatory protein D LT85_0071 hypothetical protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB D LT85_0186 hypothetical protein K18831 higA; HTH-type transcriptional regulator / antitoxin HigA D LT85_0249 Molybdate-binding domain of ModE K02019 modE; molybdate transport system regulatory protein D LT85_3183 DNA-binding domain of ModE K02019 modE; molybdate transport system regulatory protein D LT85_3789 Transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D LT85_4975 Proline dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D LT85_5003 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D LT85_4958 parB; Chromosome (plasmid) partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D LT85_4401 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D LT85_2105 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D LT85_2106 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D LT85_2107 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D LT85_2125 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D LT85_2518 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D LT85_2524 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D LT85_2807 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D LT85_2815 hypothetical protein K22486 hilA; transcriptional regulator HilA, main transcriptional regulator of SPI1 D LT85_4899 Regulator of nucleoside diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D LT85_0882 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D LT85_0982 Transcriptional regulator in PFGI-1-like cluster K07733 alpA; prophage regulatory protein D LT85_0761 FMN-binding negative transcriptional regulator K07734 paiB; transcriptional regulator D LT85_0880 yqgE; UPF0301 protein YqgE K07735 algH; putative transcriptional regulator D LT85_4595 C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor D LT85_3890 nrdR; Ribonucleotide reductase transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D LT85_4501 mraZ; Cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 18, 2025 #
Classification taken and modified from TRANSFAC 7.0