+E Ribosome biogenesis KO
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Ribosome Biogenesis - Cryobacterium arcticum
%
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D PA27867_2124 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D PA27867_2009 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
D PA27867_0065 Cell division protein FtsH K13525 VCP; transitional endoplasmic reticulum ATPase
C Other pre-60S particles
B Other ribosome biogenesis factors
C PA27867_1635 GTPase Era K03595 era; GTPase
C PA27867_1946 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C PA27867_2415 DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C PA27867_0880 Transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
C PA27867_1855 N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
C PA27867_0300 transcription antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D PA27867_2397 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D PA27867_1839 Methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D PA27867_3484 SAM-dependent methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PA27867_1154 16S rRNA methyltransferase K00564 rsmC; 16S rRNA (guanine1207-N2)-methyltransferase [EC:2.1.1.172]
D PA27867_2132 Methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D PA27867_1630 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D PA27867_3825 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D PA27867_1575 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D PA27867_2400 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D PA27867_1194 Hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D PA27867_1720 SAM-dependent methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D PA27867_2805 tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D PA27867_1194 Hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D PA27867_1323 Pseudouridylate synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D PA27867_1204 MFS transporter K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D PA27867_1592 Pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C PA27867_2737 GCN5 family acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C PA27867_2109 Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
B rRNA processing factors
C PA27867_2124 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C PA27867_1953 ribonuclease G K08300 rne; ribonuclease E [EC:3.1.26.12]
C PA27867_1867 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
B rRNA helicases
C PA27867_1336 cold-shock protein K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C PA27867_1635 GTPase Era K03595 era; GTPase
C PA27867_0690 GTPase K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C PA27867_1207 GTP-binding protein Der K03977 engA; GTPase
C PA27867_1946 GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
C PA27867_1155 GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C PA27867_0821 translation factor SUA5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C PA27867_1876 Guanosine-3'''',5''''-bis(Diphosphate) 3''''-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C PA27867_0883 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C PA27867_1940 Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
C PA27867_1633 heat-shock protein K07042 ybeY; probable rRNA maturation factor
C PA27867_0956 GTP-binding protein K06942 ychF; ribosome-binding ATPase
C PA27867_2126 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024