+F Repair protein KO #

  DNA Repair and Recombination Proteins - Chloroflexus aurantiacus

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D Caur_1407 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Caur_0714 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Caur_3505 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E Caur_1441 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Caur_2920 helix-hairpin-helix motif K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Caur_0780 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C SOSS complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D Caur_0445 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Caur_2932 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D Caur_1407 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D Caur_0714 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Caur_3505 Deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D Caur_0440 deoxyribodipyrimidine photolyase-related protein K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13] C BER (base exicision repair) D DNA glycosylases E Caur_0987 phage SPO1 DNA polymerase-related protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E Caur_0244 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E Caur_1441 HhH-GPD family protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Caur_2920 helix-hairpin-helix motif K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E Caur_1873 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E Caur_0780 DNA-(apurinic or apyrimidinic site) lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E Caur_1056 apurinic endonuclease Apn1 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E Caur_2347 Deoxyribonuclease V K05982 nfi; deoxyribonuclease V [EC:3.1.21.7] D RecJ E Caur_1134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E Caur_0241 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E Caur_0341 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E Caur_1688 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Caur_2643 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A E Caur_1064 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B E Caur_2033 excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C E Caur_0724 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Caur_1305 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Caur_1834 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Caur_0341 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E Caur_0241 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F Caur_0874 DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F Caur_0873 DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F Caur_2396 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F Caur_2500 DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F Caur_3096 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E Caur_2954 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E Caur_1183 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E Caur_1133 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E Caur_3738 exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E Caur_3737 Exonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E Caur_1016 DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E Caur_2639 DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E Caur_2419 DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E Caur_1930 DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E Caur_1621 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Caur_2725 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Caur_3069 DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E Caur_0523 DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E Caur_0241 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E Caur_0724 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Caur_1305 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Caur_1834 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E Caur_0870 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Caur_1024 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Caur_1583 single-strand binding protein K03111 ssb; single-strand DNA-binding protein E Caur_0075 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Caur_0721 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Caur_1151 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Caur_2526 D12 class N6 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E Caur_3352 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E Caur_0824 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E Caur_1359 recA protein K03553 recA; recombination protein RecA E Caur_1418 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Caur_3085 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Caur_1044 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E Caur_3842 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E Caur_2245 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Caur_1629 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E Caur_1359 recA protein K03553 recA; recombination protein RecA E Caur_0447 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E Caur_3876 DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E Caur_0261 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Caur_3561 AAA-4 family protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E Caur_1134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E Caur_2924 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E Caur_0521 recombination protein RecR K06187 recR; recombination protein RecR E Caur_0610 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E Caur_1418 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E Caur_3085 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E Caur_1044 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor E Caur_0555 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E Caur_2951 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E Caur_3385 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E Caur_2245 SMC domain protein K03546 sbcC; DNA repair protein SbcC/Rad50 E Caur_1629 nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F Caur_1241 DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F Caur_3009 DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F Caur_3917 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F Caur_0664 histone family protein DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F Caur_1134 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F Caur_2924 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F Caur_0521 recombination protein RecR K06187 recR; recombination protein RecR F Caur_0241 DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F Caur_2049 ATP-dependent DNA helicase, RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F Caur_1688 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Caur_2643 excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A F Caur_1064 excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D Caur_1359 recA protein K03553 recA; recombination protein RecA D Caur_0477 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D Caur_0610 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D Caur_0870 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Caur_1024 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Caur_1583 single-strand binding protein K03111 ssb; single-strand DNA-binding protein D Caur_1124 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D Caur_0445 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Caur_2932 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D Caur_1750 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D Caur_3331 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D Caur_3016 phosphoesterase RecJ domain protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 23, 2026