+F Repair protein KO #

  DNA Repair and Recombination Proteins - Clostridium felsineum DSM 793

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CLAUR_003240 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CLAUR_019490 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CLAUR_040920 hypothetical protein K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] E CLAUR_017340 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E CLAUR_008520 dinG_1; 3'-5' exonuclease DinG K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CLAUR_003500 nudG_1; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CLAUR_027260 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CLAUR_038580 nudG_2; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CLAUR_002440 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CLAUR_003240 ogt; Methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] C BER (base exicision repair) D DNA glycosylases E CLAUR_019760 udg; Type-4 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CLAUR_025240 tmung; Type-4 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CLAUR_019490 Putative 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CLAUR_003220 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CLAUR_017340 nth; Endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CLAUR_025210 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CLAUR_004800 nfo; endonuclease 4 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] E CLAUR_041310 nfi; Endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E CLAUR_009920 recJ_2; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CLAUR_041420 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CLAUR_012000 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CLAUR_021080 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A E CLAUR_021090 uvrB_2; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B E CLAUR_016630 uvrC_1; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E CLAUR_021030 uvrC_2; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C E CLAUR_013310 helD_1; DNA helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_013510 yjcD; Putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_016020 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_018150 helD_2; DNA helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_041410 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_012000 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CLAUR_041420 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CLAUR_035230 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CLAUR_035240 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CLAUR_035600 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CLAUR_008050 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CLAUR_034240 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CLAUR_006660 mutS_1; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E CLAUR_001200 mutS2_1; Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 E CLAUR_029740 mutS2_2; Endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E CLAUR_006670 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CLAUR_005540 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CLAUR_005550 xseB; Exodeoxyribonuclease 7 small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CLAUR_020950 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CLAUR_031520 polC; DNA polymerase III PolC-type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] E CLAUR_028070 dnaN_1; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CLAUR_041910 dnaN_2; Beta sliding clamp K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CLAUR_011530 yqeN; putative protein YqeN K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CLAUR_024170 hypothetical protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CLAUR_016490 dinG_2; 3'-5' exonuclease DinG K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CLAUR_043890 dinG_3; 3'-5' exonuclease DinG K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CLAUR_026850 hypothetical protein K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] E CLAUR_041840 ruvB_2; Holliday junction ATP-dependent DNA helicase RuvB K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CLAUR_041420 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CLAUR_013310 helD_1; DNA helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_013510 yjcD; Putative ATP-dependent DNA helicase YjcD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_016020 uvrD; DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_018150 helD_2; DNA helicase IV K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_041410 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CLAUR_014150 ssbB; Single-stranded DNA-binding protein B K03111 ssb; single-strand DNA-binding protein E CLAUR_028250 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CLAUR_041890 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CLAUR_038250 recD2_2; ATP-dependent RecD-like DNA helicase K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CLAUR_006880 recA; Protein RecA K03553 recA; recombination protein RecA E CLAUR_001980 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CLAUR_001990 ruvB_1; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CLAUR_008030 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CLAUR_040660 smc_2; Chromosome partition protein Smc K03546 sbcC; DNA repair protein SbcC/Rad50 E CLAUR_040650 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E CLAUR_006880 recA; Protein RecA K03553 recA; recombination protein RecA E CLAUR_034630 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CLAUR_028050 recF_2; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E CLAUR_007880 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CLAUR_009920 recJ_2; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CLAUR_011300 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CLAUR_026830 recR; Recombination protein RecR K06187 recR; recombination protein RecR E CLAUR_005610 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CLAUR_001980 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CLAUR_001990 ruvB_1; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D AddAB pathway proteins E CLAUR_002240 addA; ATP-dependent helicase/nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E CLAUR_002230 addB; ATP-dependent helicase/deoxyribonuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E CLAUR_022910 cas1_1; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 E CLAUR_033900 cas1_3; CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins E CLAUR_040660 smc_2; Chromosome partition protein Smc K03546 sbcC; DNA repair protein SbcC/Rad50 E CLAUR_040650 sbcD; Nuclease SbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CLAUR_028020 gyrA_2; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CLAUR_028030 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CLAUR_007180 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CLAUR_034290 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CLAUR_009920 recJ_2; Single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CLAUR_011300 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CLAUR_026830 recR; Recombination protein RecR K06187 recR; recombination protein RecR F CLAUR_041420 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F CLAUR_041270 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CLAUR_021080 uvrA; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A F CLAUR_021090 uvrB_2; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CLAUR_024390 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CLAUR_006880 recA; Protein RecA K03553 recA; recombination protein RecA D CLAUR_006720 lexA_1; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CLAUR_005610 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CLAUR_047760 dnaE1; DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CLAUR_014150 ssbB; Single-stranded DNA-binding protein B K03111 ssb; single-strand DNA-binding protein D CLAUR_028250 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CLAUR_041890 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CLAUR_000370 recX; Regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D CLAUR_003500 nudG_1; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CLAUR_027260 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CLAUR_038580 nudG_2; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CLAUR_002440 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CLAUR_012980 nrdJ; Vitamin B12-dependent ribonucleotide reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CLAUR_033300 nrdE; Ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CLAUR_033310 nrdB; Ribonucleoside-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D CLAUR_006990 nrnA; Bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024