+D GENES KO
#
KEGG Orthology (KO) - Campylobacter avium
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:cavi00010]
D CAV_1523 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CAV_0491 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CAV_0765 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CAV_0677 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CAV_0679 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CAV_0678 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CAV_0387 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CAV_1631 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CAV_0417 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CAV_1619 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CAV_1133 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CAV_1132 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CAV_0030 zinc-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CAV_1640 zinc-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CAV_0354 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CAV_0792 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:cavi00020]
D CAV_1559 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CAV_0484 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CAV_1136 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CAV_1133 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CAV_1132 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CAV_1131 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CAV_1134 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CAV_0913 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CAV_0912 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CAV_0914 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CAV_0269 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CAV_1135 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CAV_0418 mqo; malate:quinone-oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D CAV_1013 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CAV_0791 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CAV_0792 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CAV_1619 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:cavi00030]
D CAV_1523 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CAV_0308 ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CAV_0434 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CAV_0224 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CAV_0118 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CAV_1262 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CAV_0354 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CAV_1275 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CAV_0765 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CAV_0491 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:cavi00040]
D CAV_0296 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0284 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0292 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_1522 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CAV_0308 ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CAV_0434 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:cavi00051]
D CAV_0354 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CAV_0491 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CAV_0765 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CAV_0677 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CAV_1262 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:cavi00052]
D CAV_0406 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CAV_0291 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CAV_1522 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CAV_0354 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CAV_0290 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
C 00053 Ascorbate and aldarate metabolism
D CAV_0296 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0284 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0292 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
C 00500 Starch and sucrose metabolism [PATH:cavi00500]
D CAV_1522 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CAV_0298 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CAV_0282 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CAV_0354 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CAV_1523 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cavi00520]
D CAV_1187 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CAV_1494 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CAV_0940 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CAV_0863 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CAV_1635 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CAV_0274 neuC; UDP-N-acetylglucosamine 2-epimerase K08068 siaA; UDP-N-acetylglucosamine 2-epimerase (hydrolysing) [EC:3.2.1.183]
D CAV_0275 neuB; sialic acid synthase (N-acetylneuraminic acid synthetase) K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]
D CAV_0737 aminotransferase, DegT/DnrJ/EryC1/StrS family K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CAV_1325 WxcM-like sugar O-acyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D CAV_1205 pseB; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CAV_1206 pseC; UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D CAV_1215 pseH; UDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D CAV_1214 pseG; UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranosyl transferase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D CAV_1218 pseI; pseudaminic acid synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D CAV_1211 pseF; CMP-pseudaminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D CAV_0411 pglF; UDP-N-acetylglucosamine C-6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D CAV_0412 pglE; UDP-4-amino-4,6-dideoxy-alpha-D-N-acetyl-D-glucosamine transaminase K15910 pglE; UDP-N-acetylbacillosamine transaminase [EC:2.6.1.34]
D CAV_0413 pglD; UDP-4-amino-4,6-dideoxy-alpha-D-N-acetyl-D-glucosamine N-acetyltransferase K15913 pglD; UDP-N-acetylbacillosamine N-acetyltransferase [EC:2.3.1.203]
D CAV_1242 legG; GDP-2,4-diacetamido-2,4, 6-trideoxy-alpha-D-glucopyranose hydrolase / 2-epimerase K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D CAV_1241 legI; legionaminic acid synthase K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D CAV_1245 legF; CMP-legionaminic acid synthetase K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D CAV_0293 dTDP-glucose 4,6-dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D CAV_0283 UDP-glucuronate decarboxylase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D CAV_0297 UDP-glucuronate decarboxylase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35]
D CAV_0354 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CAV_1522 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CAV_0296 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0284 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0292 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0406 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CAV_0291 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CAV_0290 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CAV_1523 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CAV_1221 legC; PLP-dependent GDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-hexos-4-ulose aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D CAV_0298 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CAV_0282 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CAV_0285 aminotransferase, DegT/DnrJ/EryC1/StrS family K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D CAV_0295 aminotransferase, DegT/DnrJ/EryC1/StrS family K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
C 00620 Pyruvate metabolism [PATH:cavi00620]
D CAV_1619 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CAV_1133 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CAV_1132 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CAV_0030 zinc-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CAV_1640 zinc-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CAV_0711 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CAV_0712 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CAV_0417 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CAV_1284 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CAV_1203 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CAV_1202 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CAV_0138 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CAV_0857 FAD/FMN-containing L-lactate dehydrogenase K18930 dld; D-lactate dehydrogenase
D CAV_0619 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CAV_1013 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CAV_0791 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CAV_1135 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CAV_0418 mqo; malate:quinone-oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D CAV_0269 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CAV_0913 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CAV_0912 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CAV_0914 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CAV_0792 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CAV_1153 hypothetical protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D CAV_1726 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cavi00630]
D CAV_1135 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CAV_1559 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CAV_0484 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CAV_0660 glycolate oxidase, subunit GlcD-related protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D CAV_0441 anaerobic glycerol-3-phosphate dehydrogenase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D CAV_1644 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D CAV_0961 putative phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CAV_0465 HAD-superfamily hydrolase, subfamily IA, probable phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CAV_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CAV_0426 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CAV_0927 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:cavi00640]
D CAV_0692 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D CAV_0711 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CAV_0712 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CAV_1284 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CAV_1203 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CAV_1202 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CAV_0138 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CAV_0694 prpC; 2-methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D CAV_0695 prpD; Fe/S-independent 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D CAV_0484 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CAV_0693 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
C 00650 Butanoate metabolism [PATH:cavi00650]
D CAV_0913 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CAV_0912 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CAV_0914 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CAV_1619 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CAV_1133 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CAV_1132 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CAV_1667 NADP-dependent alcohol dehydrogenase K23259 adh; isopropanol dehydrogenase (NADP+) [EC:1.1.1.80]
D CAV_1383 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CAV_1384 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:cavi00660]
D CAV_1383 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CAV_1384 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CAV_1373 putative citrate lyase beta subunit K18292 E4.1.3.25; (S)-citramalyl-CoA lyase [EC:4.1.3.25]
D CAV_1727 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CAV_1728 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CAV_1729 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
D CAV_0677 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:cavi00190]
D CAV_0199 hypothetical protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CAV_1150 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D CAV_1663 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D CAV_0913 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CAV_0912 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CAV_0914 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CAV_0335 petA; ubiquinol cytochrome c oxidoreductase PetABC, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CAV_0336 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CAV_0337 petC; ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CAV_1505 ccoN; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CAV_1504 ccoO; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CAV_1503 ccoQ; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CAV_1502 ccoP; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CAV_0355 cccA; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D CAV_1351 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CAV_1349 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CAV_1350 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CAV_1352 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CAV_1348 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CAV_1144 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CAV_1353 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CAV_1354 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CAV_0788 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CAV_1005 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D CAV_1229 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CAV_0472 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation in photosynthetic organisms
C 00720 Carbon fixation pathways in prokaryotes
C 00680 Methane metabolism [PATH:cavi00680]
D CAV_0426 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CAV_1631 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CAV_1135 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CAV_0765 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CAV_0491 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CAV_1359 molybdopterin-containing oxidoreductase II, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CAV_0711 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CAV_0712 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CAV_0387 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CAV_0801 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CAV_0185 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CAV_0117 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:cavi00910]
D CAV_0504 napA; periplasmic nitrate reductase NapAB, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D CAV_0501 napB; periplasmic nitrate reductase NapAB, small subunit, periplasmic diheme cytochrome c550 protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D CAV_0989 nrfA; formate-dependent nitrite reductase NrfAH, periplasmic pentaheme cytochrome c subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D CAV_0988 nrfH; formate-dependent nitrite reductase NrfAH, membrane-bound tetraheme cytochrome c subunit K15876 nrfH; cytochrome c nitrite reductase small subunit
D CAV_1294 npd; nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D CAV_0361 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CAV_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CAV_1704 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CAV_1721 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CAV_1460 canB; carbonic anhydrase, beta class K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:cavi00920]
D CAV_1484 cysN; sulfate adenylyltransferase, GTPase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CAV_1485 cysD; sulfate adenylyltransferase, subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CAV_0238 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CAV_1482 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D CAV_1481 cysQ1; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CAV_1558 cysQ2; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CAV_1053 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CAV_0372 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CAV_1716 metA; homoserine O-acetyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:cavi00061]
D CAV_1284 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CAV_1203 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CAV_1202 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CAV_0138 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CAV_1282 acpP2; acyl carrier protein K02078 acpP; acyl carrier protein
D CAV_1340 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CAV_0698 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CAV_1283 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CAV_0869 short chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CAV_0386 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CAV_0147 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:cavi00121]
D CAV_0650 short-chain dehydrogenase/reductase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:cavi00561]
D CAV_0030 zinc-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CAV_1640 zinc-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D CAV_0699 plsX; acyl phosphate synthase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CAV_1257 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CAV_1023 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CAV_1470 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CAV_0146 glycosyltransferase, family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00564 Glycerophospholipid metabolism [PATH:cavi00564]
D CAV_1141 gpsA; glycerol 3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CAV_1257 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CAV_1023 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CAV_1470 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CAV_1171 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D CAV_0751 SAM-dependent methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71]
D CAV_1175 cdsA; CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CAV_1298 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CAV_0497 psd; phosphatidylserine decarboxylase, proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CAV_0367 pgsA; phosphatidylglycerophosphate synthase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CAV_0239 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
C 00565 Ether lipid metabolism [PATH:cavi00565]
D CAV_1171 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D CAV_1171 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D CAV_1171 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:cavi00592]
D CAV_1171 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
D CAV_1277 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:cavi00230]
D CAV_0354 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CAV_1275 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CAV_1566 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CAV_0753 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CAV_0009 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CAV_0899 purL; phosphoribosylformylglycinamidine synthase PurLQS, PurL subunit K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D CAV_1020 purS; phosphoribosylformylglycinamidine synthase PurLQS, PurS subunit K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D CAV_1021 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CAV_1732 purM; phosphoribosylformylglycinamide cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CAV_0516 purE; 5-aminoimidazole ribonucleotide (AIR) carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CAV_1019 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CAV_0027 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CAV_0896 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CAV_1264 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CAV_0109 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CAV_0266 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CAV_0363 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CAV_0702 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CAV_1195 putative dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CAV_1191 putative nucleotide phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CAV_1087 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CAV_0343 gmk; deoxyguanylate kinase / guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CAV_0028 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CAV_1454 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CAV_1292 spoT; ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CAV_1255 gppA; guanosine-5'-triphosphate, 3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CAV_0438 exopolyphosphatase, Ppx/GppA family K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CAV_1391 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CAV_1004 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CAV_1238 HIT family hydrolase, FHIT branch K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D CAV_1482 cysC; adenylylsulfate kinase K00860 cysC; adenylylsulfate kinase [EC:2.7.1.25]
D CAV_1484 cysN; sulfate adenylyltransferase, GTPase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CAV_1485 cysD; sulfate adenylyltransferase, subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CAV_0238 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:cavi00240]
D CAV_1653 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CAV_0158 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CAV_1072 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CAV_1140 dihydroorotase, subgroup IIa K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CAV_1472 pyrC; dihydroorotase, homodimeric type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CAV_0646 pyrD; dihydroorotate dehydrogenase 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D CAV_1456 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CAV_1509 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CAV_1290 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CAV_0702 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CAV_1669 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CAV_0109 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CAV_1204 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D CAV_0028 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CAV_1454 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CAV_1050 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CAV_1668 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CAV_0482 short-chain dehydrogenase/reductase, subgroup 5 K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:cavi00250]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_1645 ansB; asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CAV_1661 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D CAV_0083 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D CAV_0889 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CAV_0793 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CAV_1391 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CAV_0027 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CAV_1072 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CAV_1704 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CAV_1721 gltD; glutamate synthase, small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CAV_0096 putA; proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CAV_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CAV_1653 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CAV_0158 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CAV_1021 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CAV_1187 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CAV_1566 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:cavi00260]
D CAV_0722 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CAV_0402 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CAV_1552 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CAV_0132 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CAV_0616 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CAV_0426 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CAV_0387 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CAV_0801 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CAV_0185 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CAV_0117 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D CAV_0482 short-chain dehydrogenase/reductase, subgroup 5 K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D CAV_1298 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CAV_0045 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CAV_0478 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CAV_1251 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CAV_1250 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:cavi00270]
D CAV_1053 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CAV_0372 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CAV_1057 metC; cystathionine-beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CAV_1286 putative C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CAV_1083 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CAV_1028 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CAV_1339 pfs; multifunctional 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D CAV_0266 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CAV_1725 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CAV_0768 acd; 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]
D CAV_0722 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CAV_0402 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CAV_1552 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CAV_1716 metA; homoserine O-acetyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D CAV_1717 metY; O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D CAV_1628 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_1135 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CAV_0045 sdaA; L-serine deaminase I K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CAV_0801 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CAV_0185 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:cavi00280]
D CAV_1628 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cavi00290]
D CAV_0478 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CAV_1727 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CAV_1728 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CAV_1729 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D CAV_1383 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CAV_1384 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CAV_1385 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CAV_0124 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CAV_1628 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CAV_1153 hypothetical protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D CAV_1726 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:cavi00300]
D CAV_1552 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CAV_0722 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CAV_0402 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CAV_0648 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CAV_1565 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CAV_0234 dapD; tetrahydrodipicolinate succinylase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CAV_1646 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CAV_1314 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CAV_1734 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CAV_0125 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CAV_0228 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CAV_0946 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
D CAV_0656 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:cavi00220]
D CAV_0444 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CAV_0889 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CAV_0793 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CAV_1715 arginase K01476 rocF; arginase [EC:3.5.3.1]
D CAV_1021 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CAV_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_0063 argO; acetyltransferase K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1]
D CAV_1647 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D CAV_0064 argC; N-acetyl-gamma-glutamylphosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D CAV_1646 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:cavi00330]
D CAV_1052 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D CAV_0321 aguB; N-carbamoylputrescine amidohydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D CAV_0103 nspC; carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96]
D CAV_1715 arginase K01476 rocF; arginase [EC:3.5.3.1]
D CAV_0622 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CAV_0096 putA; proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_0656 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:cavi00340]
D CAV_0209 hisG(L); ATP phosphoribosyltransferase, hexameric long form K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CAV_0156 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D CAV_0154 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D CAV_0153 hisH; imidazole glycerol phosphate synthase HisFH, HisH subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CAV_0155 hisF; imidazole glycerol phosphate synthase HisFH, HisF subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CAV_0207 hisBJ; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D CAV_0303 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0177 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0208 hisD; histidinal dehydrogenase / histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:cavi00350]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_0303 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0177 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:cavi00360]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_0303 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0177 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0656 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00380 Tryptophan metabolism [PATH:cavi00380]
D CAV_0361 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CAV_1644 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cavi00400]
D CAV_0529 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CAV_0309 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CAV_0851 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CAV_0249 aroD; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CAV_0429 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D CAV_0166 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CAV_0797 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CAV_1636 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CAV_1247 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CAV_1248 trpDG; anthranilate phosphoribosyltransferase / anthranilate synthase component II K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D CAV_1249 trpF; phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D CAV_1237 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D CAV_1251 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CAV_1250 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D CAV_0176 pheA; chorismate mutase / prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D CAV_0136 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_0303 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0177 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:cavi00410]
D CAV_0982 panD; aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CAV_0983 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:cavi00430]
D CAV_1661 alanine dehydrogenase K00259 ald; alanine dehydrogenase [EC:1.4.1.1]
D CAV_0712 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CAV_0711 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:cavi00450]
D CAV_1057 metC; cystathionine-beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CAV_1286 putative C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CAV_1083 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CAV_0436 NADPH oxidoreductase, putative flavodoxin quinone reductase FqrB K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CAV_1555 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CAV_1484 cysN; sulfate adenylyltransferase, GTPase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CAV_1485 cysD; sulfate adenylyltransferase, subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CAV_0238 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CAV_0489 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:cavi00460]
D CAV_0361 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CAV_1645 ansB; asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CAV_0426 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:cavi00470]
D CAV_0377 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CAV_0656 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CAV_0640 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CAV_1021 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CAV_1379 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CAV_0389 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CAV_1734 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CAV_0125 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:cavi00480]
D CAV_0686 lactam utilization protein, LamB/YcsF family K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D CAV_1266 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CAV_0931 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CAV_1136 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:cavi00540]
D CAV_0148 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CAV_0134 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CAV_0941 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CAV_0113 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CAV_0111 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CAV_0617 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CAV_0383 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CAV_1512 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CAV_0310 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CAV_0996 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CAV_0307 putative 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CAV_0615 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CAV_0521 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CAV_0403 waaM; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CAV_1469 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CAV_0145 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CAV_1331 waaE; D,D-heptose 1-phosphate adenosyltransferase / 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D CAV_1333 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CAV_1332 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D CAV_0404 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CAV_0328 waaF; heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CAV_0684 opgE; phosphoethanolamine transferase K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cavi00541]
D CAV_1522 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CAV_0406 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CAV_0291 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CAV_0290 UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CAV_0296 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0284 nucleotide sugar dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_0292 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CAV_1319 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CAV_1320 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CAV_0298 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CAV_0282 glucose-1-phosphate cytidylyltransferase K00978 rfbF; glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33]
D CAV_0285 aminotransferase, DegT/DnrJ/EryC1/StrS family K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D CAV_0295 aminotransferase, DegT/DnrJ/EryC1/StrS family K12452 ascC; CDP-4-dehydro-6-deoxyglucose reductase, E1 [EC:1.17.1.1]
D CAV_1221 legC; PLP-dependent GDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-hexos-4-ulose aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
D CAV_0940 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CAV_0274 neuC; UDP-N-acetylglucosamine 2-epimerase K08068 siaA; UDP-N-acetylglucosamine 2-epimerase (hydrolysing) [EC:3.2.1.183]
D CAV_0275 neuB; sialic acid synthase (N-acetylneuraminic acid synthetase) K01654 neuB; N-acetylneuraminate synthase [EC:2.5.1.56]
D CAV_1205 pseB; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CAV_1206 pseC; UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D CAV_1215 pseH; UDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D CAV_1214 pseG; UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranosyl transferase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D CAV_1218 pseI; pseudaminic acid synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D CAV_1211 pseF; CMP-pseudaminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D CAV_0411 pglF; UDP-N-acetylglucosamine C-6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D CAV_0737 aminotransferase, DegT/DnrJ/EryC1/StrS family K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CAV_1325 WxcM-like sugar O-acyltransferase K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
C 00550 Peptidoglycan biosynthesis [PATH:cavi00550]
D CAV_0863 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CAV_1635 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CAV_0360 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CAV_0389 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CAV_0228 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CAV_0640 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CAV_0946 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CAV_0937 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CAV_1590 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CAV_0388 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CAV_1015 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CAV_0745 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CAV_1464 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CAV_0715 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CAV_0741 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:cavi00552]
D CAV_1590 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CAV_0458 glycosyltransferase, family 2 K18704 tarL; CDP-ribitol ribitolphosphotransferase / teichoic acid ribitol-phosphate polymerase [EC:2.7.8.14 2.7.8.47]
D CAV_0146 glycosyltransferase, family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:cavi00543]
D CAV_1053 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:cavi00730]
D CAV_0871 thiC; HMP-P synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D CAV_0674 thiD; hydroxymethylpyrimidine kinase / phosphohydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CAV_1317 thiF; ThiS adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D CAV_1311 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CAV_0326 thiH; ThiGH complex, tyrosine lyase subunit ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D CAV_0181 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CAV_1318 thiG; ThiGH complex, thiazole synthase subunit ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D CAV_0325 thiamine monophosphate synthase/TENI family protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CAV_0675 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CAV_1477 thiL; thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D CAV_1004 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CAV_0384 transcriptional regulator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:cavi00740]
D CAV_0446 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CAV_0966 ribAB; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CAV_0006 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CAV_1511 ribH; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, beta subunit) K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CAV_0267 ribE; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, alpha subunit) K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CAV_0731 ribF; bifunctional riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CAV_1048 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:cavi00750]
D CAV_0185 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CAV_0440 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D CAV_0439 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D CAV_0616 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:cavi00760]
D CAV_1453 pncBI; nicotinate phosphoribosyltransferase, subgroup A K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D CAV_0109 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CAV_0680 nadD; nicotinate-mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CAV_0618 nadE; NAD synthetase, NH3-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D CAV_0366 cinA; competence/damage-inducible domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D CAV_1337 pncA; pyrazinamidase / nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D CAV_1312 npdA; NAD-dependent protein deacetylase, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D CAV_1002 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:cavi00770]
D CAV_1383 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CAV_1384 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CAV_1385 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CAV_0124 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CAV_0984 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CAV_0983 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CAV_0419 coaX; pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D CAV_0939 dfp; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CAV_1049 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CAV_1733 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CAV_0352 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CAV_1628 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CAV_0982 panD; aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:cavi00780]
D CAV_0214 bioC; malonyl-[acp] methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D CAV_1283 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CAV_0869 short chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CAV_0386 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CAV_0147 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CAV_0213 DUF452 domain protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D CAV_0212 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CAV_0211 bioA; 7,8-diaminopelargonic acid synthase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CAV_1657 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D CAV_1561 bioB; biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CAV_1357 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:cavi00790]
D CAV_0017 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CAV_0519 NIF3 domain protein K22391 E3.5.4.16; GTP cyclohydrolase I [EC:3.5.4.16]
D CAV_0168 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D CAV_0248 folK; 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D CAV_0725 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CAV_0781 folC; bifunctional folypolyglutamate synthetase / dihydrofolate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CAV_0446 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CAV_0966 ribAB; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CAV_1542 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CAV_1541 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CAV_0062 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CAV_1705 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CAV_0193 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CAV_1415 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CAV_0105 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CAV_0848 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CAV_0862 moeA2; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CAV_0106 moeA1; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CAV_1172 mobA; molybdenum cofactor guanylyltransferase protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:cavi00670]
D CAV_0875 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CAV_0426 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CAV_0009 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CAV_0896 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CAV_1216 formyltransferase domain-containing protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CAV_1358 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CAV_1668 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CAV_0927 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D CAV_1084 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D CAV_0664 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:cavi00860]
D CAV_0495 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1199 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1155 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D CAV_0873 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CAV_0445 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CAV_1152 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CAV_0463 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D CAV_1305 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CAV_0442 hemN2; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D CAV_1492 hypothetical membrane protein (UPF0093 domain) K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D CAV_0739 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D CAV_0047 chuZ; iron-responsive cellular heme oxygenase K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cavi00130]
D CAV_0196 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D CAV_1151 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D CAV_1048 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CAV_0183 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D CAV_1198 mqnA2; 6-amino-6-deoxyfutalosine synthase K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D CAV_1189 menaquinone biosynthesis protein, SCO4494 family K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D CAV_0250 metallo-dependent hydrolase, subgroup D K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D CAV_1339 pfs; multifunctional 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D CAV_0954 mqnC; dehypoxanthinylfutalosine cyclase K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D CAV_1633 mqnD; 1,4-dihydroxy-6-naphthoate synthase K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:cavi00900]
D CAV_0181 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CAV_1176 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CAV_0236 ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D CAV_1066 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CAV_0943 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CAV_0798 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D CAV_1048 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CAV_0225 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CAV_1156 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CAV_0937 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CAV_0224 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:cavi00523]
D CAV_1319 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CAV_1320 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D CAV_1320 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:cavi00261]
D CAV_1484 cysN; sulfate adenylyltransferase, GTPase subunit CysN K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CAV_1485 cysD; sulfate adenylyltransferase, subunit CysD K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CAV_0238 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CAV_0722 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CAV_0402 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CAV_0648 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CAV_1565 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:cavi00521]
D CAV_0354 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CAV_1319 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CAV_1320 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:cavi00525]
D CAV_1319 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CAV_1320 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:cavi00401]
D CAV_0136 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_0303 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0177 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CAV_1247 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D CAV_1340 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CAV_0869 short chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CAV_0386 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CAV_1282 acpP2; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:cavi00999]
D CAV_1028 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CAV_0429 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:cavi00362]
D CAV_0079 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CAV_1073 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CAV_0126 carboxymuconolactone decarboxylase family protein K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
C 00627 Aminobenzoate degradation [PATH:cavi00627]
D CAV_0361 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CAV_1048 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D CAV_0079 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CAV_1073 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
D CAV_0361 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D CAV_0079 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CAV_1073 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:cavi03020]
D CAV_1117 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CAV_1116 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CAV_1682 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CAV_1291 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:cavi03010]
D CAV_0799 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CAV_0338 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CAV_1605 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CAV_1683 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CAV_1616 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CAV_0610 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CAV_0813 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CAV_1613 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CAV_1496 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CAV_1598 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CAV_1684 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CAV_0812 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CAV_1685 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CAV_1612 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CAV_0973 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CAV_0524 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CAV_1608 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CAV_0612 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CAV_1603 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CAV_0254 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CAV_1389 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CAV_1120 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CAV_1602 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CAV_1599 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CAV_1600 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CAV_1611 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CAV_1614 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CAV_1118 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CAV_0890 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CAV_1119 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CAV_1121 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CAV_1495 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CAV_1609 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CAV_1617 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CAV_1606 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CAV_1681 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CAV_1615 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CAV_0528 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CAV_1719 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CAV_0091 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CAV_1604 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CAV_1601 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CAV_1610 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CAV_0121 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CAV_0092 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CAV_0433 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CAV_1607 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CAV_1546 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CAV_0700 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CAV_1125 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CAV_1720 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CAV_1686 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CAV_1365 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CAV_1451 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CAV_1364 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CAV_1448 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CAV_1363 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CAV_1447 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:cavi00970]
D CAV_1450 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CAV_1579 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CAV_0073 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CAV_0072 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CAV_0815 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CAV_0854 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CAV_1303 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CAV_1076 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CAV_1080 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CAV_1689 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CAV_0965 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CAV_0261 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CAV_1078 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CAV_0861 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CAV_1128 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CAV_1691 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CAV_0071 tRNA-His K14226 tRNA-His; tRNA His
D CAV_1449 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CAV_0074 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CAV_0734 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CAV_0787 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CAV_1690 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CAV_1079 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CAV_1082 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CAV_1075 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CAV_0005 tRNA-Met K14230 tRNA-Met; tRNA Met
D CAV_0466 tRNA-Met K14230 tRNA-Met; tRNA Met
D CAV_0964 tRNA-Met K14230 tRNA-Met; tRNA Met
D CAV_1091 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CAV_0070 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CAV_0992 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CAV_0004 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CAV_1688 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CAV_1130 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CAV_1127 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CAV_1124 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CAV_1129 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CAV_1077 tRNA-Val K14237 tRNA-Val; tRNA Val
D CAV_0067 tRNA-Val K14237 tRNA-Val; tRNA Val
D CAV_1081 tRNA-Val K14237 tRNA-Val; tRNA Val
D CAV_0495 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1199 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_0364 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CAV_1142 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CAV_0422 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CAV_0736 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CAV_1003 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CAV_0518 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CAV_0962 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CAV_1591 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CAV_0164 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CAV_0644 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CAV_0489 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CAV_1216 formyltransferase domain-containing protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CAV_1358 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CAV_0771 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CAV_0778 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CAV_0365 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CAV_0425 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CAV_0345 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CAV_1154 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CAV_1051 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CAV_0795 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CAV_0796 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CAV_1293 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CAV_0165 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:cavi03060]
D CAV_1618 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CAV_1123 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CAV_1458 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CAV_0776 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CAV_0777 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CAV_0775 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CAV_0902 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CAV_1182 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CAV_0523 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CAV_1536 srpB; bacterial signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D CAV_0666 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CAV_0344 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CAV_0719 twin arginine translocation system, TatB family protein K03117 tatB; sec-independent protein translocase protein TatB
D CAV_0718 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
D CAV_0876 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CAV_1493 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:cavi04122]
D CAV_1311 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CAV_0240 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CAV_0143 putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CAV_0105 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CAV_0193 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CAV_0104 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D CAV_1415 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CAV_0848 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CAV_1316 thiS; thiamin biosynthesis protein K03154 thiS; sulfur carrier protein
D CAV_1317 thiF; ThiS adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:cavi03018]
D CAV_0721 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CAV_1631 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CAV_0756 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CAV_0608 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CAV_1308 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CAV_0663 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CAV_1698 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CAV_0967 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CAV_1145 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CAV_1229 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CAV_0472 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:cavi03030]
D CAV_0435 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CAV_0268 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CAV_1307 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CAV_0724 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CAV_0609 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CAV_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CAV_0942 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CAV_0579 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CAV_0142 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CAV_0611 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CAV_1638 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CAV_1380 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CAV_0728 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:cavi03410]
D CAV_0763 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CAV_0078 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CAV_0906 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CAV_1468 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CAV_1670 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CAV_0728 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:cavi03420]
D CAV_0784 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CAV_0976 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D CAV_0600 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D CAV_1085 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D CAV_0769 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CAV_1069 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CAV_0728 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:cavi03430]
D CAV_0359 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D CAV_0769 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CAV_1069 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CAV_0184 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CAV_0362 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CAV_1670 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CAV_0611 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CAV_0268 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CAV_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CAV_1307 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CAV_0609 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CAV_0724 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CAV_0435 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CAV_0728 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CAV_1673 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:cavi03440]
D CAV_1670 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CAV_0611 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CAV_0453 recR; recombination protein K06187 recR; recombination protein RecR
D CAV_1632 recA; recombinase K03553 recA; recombination protein RecA
D CAV_0641 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CAV_1520 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CAV_1740 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CAV_0636 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CAV_1497 addA; exonuclease V, helicase AddA K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D CAV_0268 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CAV_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CAV_1307 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CAV_0609 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CAV_0724 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CAV_0435 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CAV_0596 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus and Lyssavirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:cavi02010]
D CAV_0215 modA; molybdenum ABC transporter ModABC, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CAV_0217 modB; molybdenum ABC transporter ModABC, permease protein K02018 modB; molybdate transport system permease protein
D CAV_0218 modC; molybdenum ABC transporter ModABC, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CAV_0832 putative spermidine transporter, periplasmic spermidine-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D CAV_1193 lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D CAV_0221 lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CAV_0223 lipid asymmetry ABC transporter MlaABCDEF, permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CAV_0222 lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CAV_0950 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CAV_0949 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D CAV_0948 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D CAV_0947 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CAV_0190 amino acid ABC transporter, periplasmic aspartate/glutamate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein
D CAV_0191 aspartate/glutamate ABC transporter, permease protein K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D CAV_0192 aspartate/glutamate ABC transporter, permease protein K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D CAV_0189 amino acid ABC transporter, ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D CAV_0393 livJ; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CAV_0394 livK; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CAV_0395 livH; high-affinity branched-chain amino acid transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CAV_0396 livM; high-affinity branched-chain amino acid transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CAV_0397 livG; high-affinity branched-chain amino acid transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CAV_0398 livF; high-affinity branched-chain amino acid transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CAV_1044 metQ1; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CAV_1045 metQ2; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CAV_1046 metQ3; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CAV_1474 inner membrane lipoprotein NlpA K02073 metQ; D-methionine transport system substrate-binding protein
D CAV_0773 metI; DL-methionine ABC transporter MetINQ, permease protein K02072 metI; D-methionine transport system permease protein
D CAV_0772 metN; DL-methionine ABC transporter MetINQ, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CAV_1410 znuA; zinc ABC transporter ZnuABC, periplasmic zinc-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CAV_1412 znuB; zinc ABC transporter ZnuABC, membrane protein K09816 znuB; zinc transport system permease protein
D CAV_1411 znuC; zinc ABC transporter ZnuABC, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CAV_0381 kpsE; capsular polysaccharide export system, inner membrane protein K10107 kpsE; capsular polysaccharide transport system permease protein
D CAV_0379 kpsM; capsular polysaccharide export system, inner membrane protein K09688 kpsM; capsular polysaccharide transport system permease protein
D CAV_0380 kpsT; capsular polysaccharide export system, ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D CAV_0935 putative lipooligosaccharide transport system, permease component (LptF family) K07091 lptF; lipopolysaccharide export system permease protein
D CAV_0123 putative lipooligosaccharide transport system, permease component (LptG family) K11720 lptG; lipopolysaccharide export system permease protein
D CAV_0886 putative lipooligosaccharide transport system, ATP-binding component (LptB family) K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CAV_1288 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CAV_1287 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CAV_0645 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CAV_0705 macB; macrolide-specific efflux protein, ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CAV_0077 multidrug ABC transporter, membrane protein/ATP-binding protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:cavi03070]
D CAV_1231 cmeD; multidrug efflux system CmeDEF, outer membrane component CmeD K12340 tolC; outer membrane protein
D CAV_1621 ctsD; transformation system, type II secretion system secretin protein CtsD K02453 gspD; general secretion pathway protein D
D CAV_1259 ctsF; transformation system, type II secretion system membrane protein CtsF K02455 gspF; general secretion pathway protein F
D CAV_1179 ctsG; transformation system, putative pseudopilin protein CtsG K02456 gspG; general secretion pathway protein G
D CAV_0597 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CAV_0776 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CAV_0777 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CAV_1123 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CAV_1458 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CAV_1618 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CAV_0775 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CAV_0902 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CAV_1182 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CAV_0666 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CAV_0523 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CAV_0344 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CAV_0719 twin arginine translocation system, TatB family protein K03117 tatB; sec-independent protein translocase protein TatB
D CAV_0718 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
D CAV_1108 type IV secretion system protein VirB6 K03201 virB6; type IV secretion system protein VirB6
D CAV_0819 type VI secretion system, secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp
D CAV_0831 type VI secretion system, ImcF family protein K11891 impL; type VI secretion system protein ImpL
D CAV_0830 type VI secretion system, DotU protein K11892 impK; type VI secretion system protein ImpK
D CAV_0823 type VI secretion system, ClpV1 family ATPase K11907 vasG; type VI secretion system protein VasG
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:cavi02020]
D CAV_0950 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CAV_0957 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CAV_0845 flaC; flagellar secreted protein K02406 fliC; flagellin
D CAV_1168 flaA; flagellin K02406 fliC; flagellin
D CAV_1170 flaB; flagellin K02406 fliC; flagellin
D CAV_0244 fliA; RNA polymerase sigma28 factor K02405 fliA; RNA polymerase sigma factor FliA
D CAV_0980 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CAV_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CAV_0603 dcuB; anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CAV_1067 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CAV_1188 putative uridylyltransferase GlnD K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D CAV_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CAV_0885 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CAV_0709 hydC; [NiFe] hydrogenase, cytochrome b subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D CAV_1260 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CAV_1400 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0102 MCP-domain signal transduction protein (DUF3365 domain) K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1476 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1648 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1706 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0152 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0171 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0188 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0204 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0116 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CAV_0115 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CAV_1302 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CAV_1261 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CAV_0114 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CAV_0510 TRAP dicarboxylate transporter DctPQM, solute-binding protein DctP K11688 dctP; C4-dicarboxylate-binding protein DctP
D CAV_0509 TRAP dicarboxylate transporter DctPQM, permease subunit DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D CAV_0508 TRAP dicarboxylate transporter DctPQM, permease subunit DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D CAV_0335 petA; ubiquinol cytochrome c oxidoreductase PetABC, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CAV_0336 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CAV_0337 petC; ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CAV_0355 cccA; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D CAV_1505 ccoN; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CAV_1504 ccoO; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CAV_1503 ccoQ; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CAV_1502 ccoP; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CAV_1231 cmeD; multidrug efflux system CmeDEF, outer membrane component CmeD K12340 tolC; outer membrane protein
D CAV_0758 low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis [PATH:cavi04148]
D CAV_1715 arginase K01476 rocF; arginase [EC:3.5.3.1]
D CAV_0335 petA; ubiquinol cytochrome c oxidoreductase PetABC, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:cavi02024]
D CAV_1725 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CAV_1247 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CAV_0529 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CAV_1370 spermidine/putrescine ABC transporter, periplasmic substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D CAV_1368 spermidine/putrescine ABC transporter, permease component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CAV_1369 spermidine/putrescine ABC transporter, permease component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CAV_1367 spermidine/putrescine ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CAV_0393 livJ; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CAV_0394 livK; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CAV_0395 livH; high-affinity branched-chain amino acid transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CAV_0396 livM; high-affinity branched-chain amino acid transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CAV_0397 livG; high-affinity branched-chain amino acid transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CAV_0398 livF; high-affinity branched-chain amino acid transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CAV_0446 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CAV_0006 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CAV_1654 putative inner membrane transporter, YdcZ family K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CAV_1405 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CAV_0902 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CAV_1123 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CAV_1458 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CAV_1618 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CAV_0775 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CAV_1182 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CAV_0666 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CAV_0523 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:cavi02030]
D CAV_1400 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0102 MCP-domain signal transduction protein (DUF3365 domain) K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1476 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1648 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1706 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0152 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0171 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0188 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0204 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0115 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CAV_0116 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CAV_1302 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CAV_1261 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CAV_0114 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CAV_1260 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CAV_0179 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CAV_0243 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CAV_1253 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CAV_0242 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CAV_0980 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CAV_0767 putative outer membrane protein K02557 motB; chemotaxis protein MotB
D CAV_0981 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:cavi02040]
D CAV_0742 fliE; flagellar proximal rod protein K02408 fliE; flagellar hook-basal body complex protein FliE
D CAV_0178 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D CAV_0179 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CAV_0180 fliH; flagellar export apparatus, flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CAV_0018 fliI; flagellar export apparatus, flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CAV_0057 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CAV_0353 fliL; flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D CAV_0243 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CAV_1253 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CAV_0242 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CAV_0613 fliP; flagellar export apparatus, flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CAV_1634 fliQ; flagellar export apparatus, flagellar basal body protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CAV_0341 fliR; flagellar export apparatus, flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CAV_0971 flhA; flagellar export apparatus, flagellar biosynthetic protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CAV_0697 flhB; flagellar export apparatus, flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CAV_1047 flgA; flagellar basal body P-ring biosynthesis protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CAV_0744 flgB; flagellar proximal rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D CAV_0743 flgC; flagellar proximal rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D CAV_0056 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CAV_0055 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D CAV_0144 flgE2; flagellar hook protein, epsilonproteobacterial variant K02390 flgE; flagellar hook protein FlgE
D CAV_0836 flgG2; flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D CAV_0837 flgG; flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D CAV_0713 flgH; flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D CAV_1274 flgI; flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D CAV_1273 putative flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D CAV_1270 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D CAV_0735 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D CAV_0749 flgP; LPP20 family lipoprotein K09860 flgP; outer membrane protein FlgP
D CAV_0750 flgQ; flagellar-associated protein FlgQ K24346 flgQ; flagellar motility protein FlgQ
D CAV_0845 flaC; flagellar secreted protein K02406 fliC; flagellin
D CAV_1168 flaA; flagellin K02406 fliC; flagellin
D CAV_1170 flaB; flagellin K02406 fliC; flagellin
D CAV_0669 fliD; flagellar filament cap protein K02407 fliD; flagellar hook-associated protein 2
D CAV_0670 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CAV_0980 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CAV_0767 putative outer membrane protein K02557 motB; chemotaxis protein MotB
D CAV_0981 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CAV_0835 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
D CAV_0885 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CAV_0244 fliA; RNA polymerase sigma28 factor K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CAV_1631 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:cavi01501]
D CAV_1403 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CAV_1404 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CAV_1405 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CAV_1231 cmeD; multidrug efflux system CmeDEF, outer membrane component CmeD K12340 tolC; outer membrane protein
D CAV_0745 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CAV_0715 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CAV_0741 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:cavi01502]
D CAV_0640 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CAV_0377 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CAV_0946 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CAV_0388 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CAV_1015 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cavi01503]
D CAV_1469 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CAV_1295 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CAV_0957 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CAV_1403 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CAV_1404 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CAV_1231 cmeD; multidrug efflux system CmeDEF, outer membrane component CmeD K12340 tolC; outer membrane protein
D CAV_0148 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:cavi01000]
C 01001 Protein kinases [BR:cavi01001]
D CAV_0955 cprS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CAV_1406 dccS; two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CAV_0454 racS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CAV_0532 flgS; two-component system, sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D CAV_0115 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:cavi01009]
D CAV_1024 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CAV_0117 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:cavi01002]
D CAV_1493 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CAV_0936 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CAV_0710 hydD; [NiFe] hydrogenase maturation protease HydD K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D CAV_1087 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CAV_1378 lipoprotein, NlpC/P60 family K13695 nlpC; probable lipoprotein NlpC
D CAV_1566 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CAV_1704 gltB; glutamate synthase, large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CAV_1187 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CAV_0206 DJ-1/PfpI family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CAV_0314 hypothetical protein K07052 K07052; CAAX protease family protein
D CAV_1071 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D CAV_1266 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CAV_1314 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CAV_0931 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CAV_1574 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CAV_1037 pepP; proline aminopeptidase P K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CAV_1300 ftsH2; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CAV_0849 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CAV_0368 RseP-like zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CAV_0957 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CAV_0015 clpP; ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CAV_0673 lon; DNA-binding, ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CAV_0876 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CAV_1018 ctpA; carboxyl-terminal protease family protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CAV_0251 sppA; signal peptide peptidase protease IV K04773 sppA; protease IV [EC:3.4.21.-]
D CAV_0891 hslV; heat shock protein HslVU, ATP-dependent protease subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D CAV_0515 collagenase-like peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D CAV_1463 alpha-2-macroglobulin domain-containing protein K06894 yfhM; alpha-2-macroglobulin
C 01003 Glycosyltransferases [BR:cavi01003]
D CAV_0146 glycosyltransferase, family 1 K19002 mgs; 1,2-diacylglycerol 3-alpha-glucosyltransferase [EC:2.4.1.337]
D CAV_1464 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CAV_0745 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CAV_0415 pglA; N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase K15914 pglA; N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase [EC:2.4.1.290]
D CAV_0408 pglH; GalNAc-alpha-(1,4)-GalNAc-alpha-(1, 3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase K17249 pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]
D CAV_0409 pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase K17250 pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase [EC:2.4.1.293]
D CAV_0410 pglJ; N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase K17248 pglJ; N-acetylgalactosamine-N,N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase [EC:2.4.1.291]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:cavi01005]
D CAV_0148 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CAV_0111 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CAV_0134 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CAV_0941 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CAV_0113 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CAV_0617 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CAV_0403 waaM; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CAV_0521 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CAV_1469 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CAV_1512 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CAV_0307 putative 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CAV_0615 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CAV_0310 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CAV_0996 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CAV_0383 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CAV_0404 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CAV_0328 waaF; heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CAV_0684 opgE; phosphoethanolamine transferase K19353 eptC; heptose-I-phosphate ethanolaminephosphotransferase [EC:2.7.8.-]
D CAV_0145 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CAV_1333 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CAV_1331 waaE; D,D-heptose 1-phosphate adenosyltransferase / 7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D CAV_1332 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cavi01011]
D CAV_0863 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CAV_1635 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CAV_0360 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CAV_0389 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CAV_0228 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CAV_0640 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CAV_0377 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CAV_1379 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CAV_0388 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CAV_1015 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CAV_1590 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CAV_0643 murJ; lipid II flippase K03980 murJ; putative peptidoglycan lipid II flippase
D CAV_0745 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CAV_1464 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CAV_0715 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CAV_0741 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CAV_0493 slt; soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CAV_0998 mltD; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D CAV_1138 YceG-like protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CAV_0997 rlpA; rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CAV_1295 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:cavi01004]
D CAV_1340 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CAV_0698 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CAV_1283 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CAV_0869 short chain dehydrogenase/reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CAV_0386 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CAV_0147 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CAV_1277 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D CAV_0692 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D CAV_0699 plsX; acyl phosphate synthase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CAV_1257 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CAV_1023 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:cavi01006]
D CAV_0225 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CAV_1156 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CAV_0937 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CAV_0197 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CAV_0196 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:cavi01007]
D CAV_0495 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1199 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1293 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CAV_0165 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CAV_0644 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CAV_0345 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CAV_0489 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CAV_0365 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CAV_0771 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CAV_0778 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CAV_0425 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CAV_1003 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CAV_1051 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CAV_0518 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CAV_0962 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CAV_0164 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CAV_1154 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CAV_1591 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CAV_0736 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CAV_0795 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CAV_0796 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CAV_1054 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CAV_1551 aspartate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D CAV_0303 aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0177 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CAV_0212 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CAV_1286 putative C-S lyase K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CAV_1646 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CAV_0211 bioA; 7,8-diaminopelargonic acid synthase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CAV_0873 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CAV_0656 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CAV_1628 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CAV_0185 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CAV_0737 aminotransferase, DegT/DnrJ/EryC1/StrS family K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CAV_1221 legC; PLP-dependent GDP-2-acetamido-2,6-dideoxy-alpha-D-xylo-hexos-4-ulose aminotransferase K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:cavi00194]
D CAV_1348 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CAV_1349 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CAV_1350 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CAV_1351 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CAV_1352 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CAV_1353 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CAV_1354 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CAV_0788 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CAV_1144 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CAV_0872 putative ATPase-related protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:cavi03000]
D CAV_1402 cmeR; multidrug efflux system CmeABC transcriptional regulator, TetR family K18992 cmeR; TetR/AcrR family transcriptional regulator, cmeABC operon repressor
D CAV_0959 hspR; heat shock transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D CAV_0424 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CAV_0182 perR; peroxide stress transcriptional regulator PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D CAV_0507 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D CAV_1357 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CAV_0096 putA; proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CAV_1409 putative DNA binding protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D CAV_0629 transcriptional regulator, FrmR family K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D CAV_1355 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CAV_0384 transcriptional regulator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 03021 Transcription machinery [BR:cavi03021]
D CAV_1682 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CAV_1117 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CAV_1116 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CAV_1291 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CAV_0835 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
D CAV_0885 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CAV_0244 fliA; RNA polymerase sigma28 factor K02405 fliA; RNA polymerase sigma factor FliA
D CAV_0923 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D CAV_1510 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D CAV_1122 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D CAV_0112 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CAV_1308 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:cavi03019]
D CAV_1637 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CAV_1698 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CAV_0663 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CAV_0608 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CAV_1631 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CAV_0756 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CAV_1308 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CAV_0967 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CAV_1145 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CAV_1229 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CAV_0472 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CAV_0721 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CAV_1067 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:cavi03011]
D CAV_0799 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CAV_0338 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CAV_1605 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CAV_1683 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CAV_1616 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CAV_0610 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CAV_0813 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CAV_1613 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CAV_1496 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CAV_1598 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CAV_1684 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CAV_0812 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CAV_1685 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CAV_1612 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CAV_0973 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CAV_0524 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CAV_1608 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CAV_0612 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CAV_1603 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CAV_0254 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CAV_1389 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CAV_1120 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CAV_1602 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CAV_1599 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CAV_1600 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CAV_1611 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CAV_1614 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CAV_0890 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CAV_1119 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CAV_1121 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CAV_1118 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CAV_1495 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CAV_1609 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CAV_1617 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CAV_1606 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CAV_1681 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CAV_1615 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CAV_0528 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CAV_1719 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CAV_0091 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CAV_1604 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CAV_1601 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CAV_1610 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CAV_0092 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CAV_0433 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CAV_1607 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CAV_1546 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CAV_0700 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CAV_1125 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CAV_1720 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CAV_1686 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CAV_0121 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CAV_1363 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CAV_1447 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CAV_1365 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CAV_1451 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CAV_1364 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CAV_1448 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:cavi03009]
D CAV_1637 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CAV_0893 era; GTP-binding protein K03595 era; GTPase
D CAV_0065 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D CAV_0923 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D CAV_1510 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D CAV_1122 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D CAV_1699 rsmA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CAV_1545 rsmE; 16S rRNA m3U1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CAV_0447 gidB; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CAV_0654 rsmH; 16S rRNA m4C1402 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CAV_1547 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CAV_0730 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CAV_1548 rRNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CAV_0139 SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CAV_1701 rlmN; 23S rRNA m2A2503 methyltransferase / tRNA m2A37 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CAV_1697 rluB; 23S rRNA pseudouridine 2605 synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CAV_0026 23S rRNA pseudouridine synthase, RluD family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CAV_0522 rluA; 23S rRNA and tRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CAV_0468 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CAV_1208 acetyltransferase, RimI family K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CAV_0526 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D CAV_1487 radical SAM methylthiotransferase, MiaB/RimO family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D CAV_1301 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D CAV_0605 Holliday junction resolvase-like protein (UPF0081 domain) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CAV_0167 engA; GTP-binding protein K03977 engA; GTPase
D CAV_1292 spoT; ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CAV_0129 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CAV_0128 DUF150 domain protein K09748 rimP; ribosome maturation factor RimP
D CAV_0681 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein
D CAV_1267 ychF; GTP-binding protein, putative GTP-dependent translation factor K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:cavi03016]
D CAV_0928 cca; multifunctional tRNA nucleotidyl transferase / 2'3'-cyclic phosphodiesterase / 2' nucleotidase/phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D CAV_0495 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1199 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1154 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CAV_0365 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CAV_0778 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CAV_0489 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CAV_0345 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CAV_0425 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CAV_1003 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CAV_0736 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CAV_1591 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CAV_0164 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CAV_0644 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CAV_0771 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CAV_1051 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CAV_0795 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CAV_0796 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CAV_1293 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CAV_0165 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CAV_0794 PKCI-related HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CAV_0470 trmI; tRNA m7G46 methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CAV_0934 truA; tRNA pseudouridine synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CAV_1068 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CAV_1478 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D CAV_1311 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CAV_0197 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CAV_0900 mnmE; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, GTPase component K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CAV_0333 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CAV_1481 cysQ1; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CAV_1558 cysQ2; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CAV_0904 rnpA; ribonuclease P, protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D CAV_1016 rnpB; ribonuclease P, RNA component K01978 rnpB; M1 RNA
D CAV_0518 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CAV_0962 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CAV_0141 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CAV_0921 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CAV_0732 cmoA; carboxy-S-adenosyl-L-methionine synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D CAV_0634 cmoB; tRNA (cmo5U34)-carboxymethyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D CAV_0480 trmA; tRNA m5U54 methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D CAV_0527 trmD; tRNA m1G37 methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CAV_0205 rRNA methylase, SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CAV_1234 tRNA m6A37 methyltransferase TrmN6 K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D CAV_0240 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CAV_0143 putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CAV_1338 tRNA C32 thiolase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CAV_1296 mnmC; bifunctional 5-methylaminomethyl-2-thiouridine-forming methyltransferase / FAD-dependent demodification enzyme K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D CAV_0717 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CAV_0062 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CAV_1542 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CAV_1541 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CAV_1705 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CAV_0081 DUF208 domain protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D CAV_0853 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CAV_1488 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CAV_0133 tsaB; N6-L-threonylcarbamoyladenine synthase, TsaB subunit K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CAV_1178 tsaD; N6-L-threonylcarbamoyladenine synthase, TsaD subunit K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CAV_0887 tsaE; N6-L-threonylcarbamoyladenine synthase, TsaE subunit K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CAV_0108 dinucleotide-utilizing enzyme, molybdopterin/thiamine biosynthesis family 1 K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CAV_0608 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CAV_0756 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:cavi03012]
D CAV_0130 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CAV_1592 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CAV_0339 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D CAV_1126 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CAV_0814 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CAV_0253 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CAV_1457 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D CAV_0807 hemK; protein-(glutamine-N5) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CAV_0122 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CAV_1687 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CAV_1017 efp; translation elongation factor EF-P K02356 efp; elongation factor P
D CAV_0859 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:cavi03110]
D CAV_1062 clpA; ATP-dependent Clp protease, ATP-binding subunit K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D CAV_0628 clpB; ATP-dependent Clp protease, ATP-binding subunit K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CAV_0149 clpX; ATP-dependent ClpXP protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CAV_0892 hslU; heat shock protein HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D CAV_1024 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CAV_0967 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CAV_1145 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CAV_1011 DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D CAV_0456 dnaJ; DnaK system heat shock co-chaperone K03686 dnaJ; molecular chaperone DnaJ
D CAV_0958 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D CAV_0898 Dna-J like membrane chaperone protein K05801 djlA; DnaJ like chaperone protein
D CAV_0968 grpE; DnaK system nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D CAV_1146 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D CAV_0957 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CAV_1300 ftsH2; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CAV_0849 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CAV_1144 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CAV_0375 copper-binding protein (DUF461 domain) K09796 pccA; periplasmic copper chaperone A
D CAV_1039 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CAV_1043 hypB; hydrogenase nickel insertion protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CAV_0350 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CAV_0653 putative periplasmic folding chaperone K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D CAV_1341 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D CAV_0764 peb4; SurA-like chaperone / peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CAV_1554 trx; thioredoxin K03671 TXN; thioredoxin
D CAV_1197 putative thioredoxin-like protein, DsbA family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CAV_0471 dsbD; thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:cavi04131]
D CAV_0702 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CAV_0679 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CAV_0417 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CAV_1024 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:cavi03051]
D CAV_1024 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:cavi03032]
D CAV_1638 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CAV_0371 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CAV_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CAV_0942 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CAV_0579 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CAV_0142 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CAV_0611 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CAV_0268 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CAV_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CAV_0609 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CAV_0724 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CAV_0435 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CAV_1307 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CAV_1380 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CAV_0728 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CAV_1673 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CAV_0748 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CAV_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CAV_1514 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CAV_1115 DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:cavi03036]
D CAV_1637 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CAV_0371 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CAV_0958 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D CAV_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CAV_1718 DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D CAV_0652 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CAV_1287 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CAV_0741 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CAV_1159 ftsK; DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CAV_1014 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CAV_1288 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CAV_0651 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CAV_1295 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CAV_1403 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CAV_0150 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CAV_0151 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D CAV_0467 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D CAV_1356 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D CAV_1355 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CAV_0333 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CAV_0447 gidB; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CAV_0882 xerH; integrase/recombinase K04763 xerD; integrase/recombinase XerD
D CAV_0235 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CAV_0714 engB; ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:cavi03400]
D CAV_0485 ogt; O6-alkylguanine-DNA-alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CAV_0078 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CAV_0763 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CAV_0906 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CAV_1468 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CAV_1670 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CAV_0728 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CAV_0976 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D CAV_0600 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D CAV_1085 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D CAV_0769 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CAV_1069 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CAV_1117 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CAV_1116 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CAV_1682 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CAV_1291 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CAV_0784 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CAV_0359 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D CAV_0184 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CAV_0362 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CAV_0268 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CAV_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CAV_0609 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CAV_0724 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CAV_0435 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CAV_1307 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CAV_0611 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CAV_1673 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CAV_1497 addA; exonuclease V, helicase AddA K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
D CAV_1632 recA; recombinase K03553 recA; recombination protein RecA
D CAV_0641 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CAV_1520 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CAV_1740 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CAV_0596 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CAV_1149 radA; DNA repair and recombination protein K04485 radA; DNA repair protein RadA/Sms
D CAV_0636 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CAV_0453 recR; recombination protein K06187 recR; recombination protein RecR
D CAV_1001 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CAV_0748 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CAV_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CAV_1514 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CAV_0371 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CAV_0028 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CAV_1454 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:cavi03029]
D CAV_0336 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CAV_0130 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CAV_1592 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CAV_0339 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D CAV_1126 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CAV_0814 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CAV_0893 era; GTP-binding protein K03595 era; GTPase
D CAV_1293 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CAV_0778 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CAV_1003 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CAV_0345 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CAV_0364 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CAV_1142 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CAV_0422 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CAV_0611 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CAV_0137 beta-barrel assembly machinery complex, BamA/YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CAV_0967 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CAV_0968 grpE; DnaK system nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D CAV_1145 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CAV_1146 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D CAV_1011 DnaJ domain protein K03686 dnaJ; molecular chaperone DnaJ
D CAV_0456 dnaJ; DnaK system heat shock co-chaperone K03686 dnaJ; molecular chaperone DnaJ
D CAV_1311 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CAV_0235 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CAV_0902 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CAV_0373 cytochrome oxidase biogenesis protein, Sco1/SenC/PrrC family K07152 SCO1; protein SCO1
D CAV_1024 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:cavi02000]
D CAV_0645 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CAV_0407 pglK; flippase K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D CAV_0705 macB; macrolide-specific efflux protein, ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CAV_0077 multidrug ABC transporter, membrane protein/ATP-binding protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D CAV_0804 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D CAV_0215 modA; molybdenum ABC transporter ModABC, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CAV_0217 modB; molybdenum ABC transporter ModABC, permease protein K02018 modB; molybdate transport system permease protein
D CAV_0218 modC; molybdenum ABC transporter ModABC, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CAV_0832 putative spermidine transporter, periplasmic spermidine-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein
D CAV_1370 spermidine/putrescine ABC transporter, periplasmic substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D CAV_1368 spermidine/putrescine ABC transporter, permease component K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CAV_1369 spermidine/putrescine ABC transporter, permease component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CAV_1367 spermidine/putrescine ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CAV_0221 lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CAV_0223 lipid asymmetry ABC transporter MlaABCDEF, permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CAV_0222 lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CAV_0220 putative lipid asymmetry ABC transporter MlaABCDEF component MlaB K18480 linN; cholesterol transport system auxiliary component
D CAV_1193 lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D CAV_0950 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CAV_0949 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D CAV_0948 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D CAV_0947 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CAV_0190 amino acid ABC transporter, periplasmic aspartate/glutamate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein
D CAV_0191 aspartate/glutamate ABC transporter, permease protein K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D CAV_0192 aspartate/glutamate ABC transporter, permease protein K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D CAV_0189 amino acid ABC transporter, ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D CAV_0393 livJ; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CAV_0394 livK; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CAV_0395 livH; high-affinity branched-chain amino acid transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CAV_0396 livM; high-affinity branched-chain amino acid transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CAV_0397 livG; high-affinity branched-chain amino acid transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CAV_0398 livF; high-affinity branched-chain amino acid transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CAV_1044 metQ1; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CAV_1045 metQ2; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CAV_1046 metQ3; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CAV_1474 inner membrane lipoprotein NlpA K02073 metQ; D-methionine transport system substrate-binding protein
D CAV_0773 metI; DL-methionine ABC transporter MetINQ, permease protein K02072 metI; D-methionine transport system permease protein
D CAV_0772 metN; DL-methionine ABC transporter MetINQ, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CAV_0933 cjaA; amino acid ABC transporter, periplasmic cysteine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CAV_0459 papP; pathogenesis-associated glutamine ABC transporter, permease protein K02029 ABC.PA.P; polar amino acid transport system permease protein
D CAV_0460 ABC transporter, His/Glu/Gln/Arg/opine family protein (permease protein) K02029 ABC.PA.P; polar amino acid transport system permease protein
D CAV_0461 papQ; pathogenesis-associated glutamine ABC transporter, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D CAV_1575 nikZ; nickel ABC transporter, periplasmic nickel-binding protein K25103 nikZ; nickel transport system substrate-binding protein
D CAV_0203 nikY; nickel ABC transporter, permease protein K25104 nikY; nickel transport system permease protein
D CAV_0202 nikX; nickel ABC transporter, permease protein K25105 nikX; nickel transport system permease protein
D CAV_0201 nikW; nickel ABC transporter, ATP-binding protein K25106 nikW; nickel transport system ATP-binding protein [EC:7.2.2.11]
D CAV_0200 nikV; nickel ABC transporter, ATP-binding protein K25107 nikV; nickel transport system ATP-binding protein [EC:7.2.2.11]
D CAV_1163 ceuE; enterochelin ABC transporter CeuBCDE, periplasmic substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D CAV_1161 ceuC; enterochelin ABC transporter CeuBCDE, permease protein K25283 yclO; iron-siderophore transport system permease protein
D CAV_1160 ceuB; enterochelin ABC transporter CeuBCDE, permease protein K25284 yclN; iron-siderophore transport system permease protein
D CAV_1162 ceuD; enterochelin ABC transporter CeuBCDE, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D CAV_0052 chuD; heme ABC transporter ChuBCD, periplasmic substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D CAV_0050 chuB; heme ABC transporter ChuBCD, permease protein K25027 btuC; cobalamin transport system permease protein
D CAV_0051 chuC; heme ABC transporter ChuBCD, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D CAV_1410 znuA; zinc ABC transporter ZnuABC, periplasmic zinc-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CAV_1412 znuB; zinc ABC transporter ZnuABC, membrane protein K09816 znuB; zinc transport system permease protein
D CAV_1411 znuC; zinc ABC transporter ZnuABC, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CAV_0379 kpsM; capsular polysaccharide export system, inner membrane protein K09688 kpsM; capsular polysaccharide transport system permease protein
D CAV_0381 kpsE; capsular polysaccharide export system, inner membrane protein K10107 kpsE; capsular polysaccharide transport system permease protein
D CAV_0380 kpsT; capsular polysaccharide export system, ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D CAV_0935 putative lipooligosaccharide transport system, permease component (LptF family) K07091 lptF; lipopolysaccharide export system permease protein
D CAV_0123 putative lipooligosaccharide transport system, permease component (LptG family) K11720 lptG; lipopolysaccharide export system permease protein
D CAV_0886 putative lipooligosaccharide transport system, ATP-binding component (LptB family) K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CAV_1288 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CAV_1287 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CAV_1183 lolC; lipoprotein releasing system, transmembrane protein, LolC/E family K02004 ABC.CD.P; putative ABC transport system permease protein
D CAV_0340 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CAV_1166 sodium/dicarboxylate cotransporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D CAV_0602 MATE family efflux protein K26937 dinF; MATE family, multidrug efflux pump
D CAV_1694 kgtP; alpha-ketoglutarate permease K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D CAV_1413 major facilitator superfamily transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D CAV_0231 drug resistance transporter, Bcr/CflA family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D CAV_0757 major facilitator superfamily transporter K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D CAV_1680 putative sugar efflux permease, major facilitator superfamily K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D CAV_1374 major facilitator superfamily transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D CAV_1007 major facilitator superfamily transporter K26602 yihN; MFS transporter, GlpU family, inner membrane protein
D CAV_1459 BAX inhibitor (BI)-1 like protein (UPF0005 domain) K19416 yccA; modulator of FtsH protease
D CAV_1461 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein
D CAV_0657 Mg/Co/Ni transporter, MgtE family K06213 mgtE; magnesium transporter
D CAV_0980 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CAV_0767 putative outer membrane protein K02557 motB; chemotaxis protein MotB
D CAV_0981 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CAV_1540 exbB; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CAV_1346 tolR; Tol-Pal system subunit TolR K03559 exbD; biopolymer transport protein ExbD
D CAV_1539 exbD; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D CAV_0330 heavy-metal-associated domain protein, putative copper metallochaperone CopZ K08364 merP; periplasmic mercuric ion binding protein
D CAV_1336 hypothetical membrane protein (DUF21 domain), possible TlyC family hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CAV_1399 putative outer membrane protein K16079 omp31; outer membrane immunogenic protein
D CAV_0637 TonB-dependent siderophore receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D CAV_0048 chuA; heme uptake system outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CAV_0049 TonB-dependent heme receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CAV_1231 cmeD; multidrug efflux system CmeDEF, outer membrane component CmeD K12340 tolC; outer membrane protein
D CAV_1405 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CAV_0137 beta-barrel assembly machinery complex, BamA/YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CAV_0672 beta-barrel assembly machinery complex, BamD/YfiO lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D CAV_0994 putative lipooligosaccharide transport system, periplasmic component (LptA family) K09774 lptA; lipopolysaccharide export system protein LptA
D CAV_0755 putative lipooligosaccharide transport system, OM component (LptD family) K04744 lptD; LPS-assembly protein
D CAV_0322 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D CAV_0039 zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family
D CAV_1404 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CAV_1655 multidrug efflux system protein, EmrE family K18924 ykkC; paired small multidrug resistance pump
D CAV_1656 multidrug efflux system protein, EmrE family K18925 ykkD; paired small multidrug resistance pump
D CAV_0331 multidrug efflux system protein, EmrE family K11742 mdtI; spermidine export protein MdtI
D CAV_0332 multidrug efflux system protein, EmrE family K11743 mdtJ; spermidine export protein MdtJ
D CAV_1654 putative inner membrane transporter, YdcZ family K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CAV_0084 anaerobic C4-dicarboxylate transporter, DcuA/DcuB family K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D CAV_0086 anaerobic C4-dicarboxylate transporter, DcuA/DcuB family K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D CAV_0603 dcuB; anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CAV_0097 lctP; L-lactate permease K03303 lutP; lactate permease
D CAV_0685 tellurite-resistance/dicarboxylate transporter (TDT) family protein K03304 tehA; tellurite resistance protein
D CAV_0095 putP; sodium/proline symporter K11928 putP; sodium/proline symporter
D CAV_0866 putative cation/acetate symporter ActP K14393 actP; cation/acetate symporter
D CAV_1376 nhaA1; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D CAV_1377 nhaA2; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D CAV_1090 ktrB; potassium transporter KtrAB, KtrB subunit K03498 trkH; trk/ktr system potassium uptake protein
D CAV_1089 ktrA; potassium transporter KtrAB, KtrA subunit K03499 trkA; trk/ktr system potassium uptake protein
D CAV_1190 xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D CAV_0046 sdaC; L-serine transporter K03837 sdaC; serine transporter
D CAV_0510 TRAP dicarboxylate transporter DctPQM, solute-binding protein DctP K11688 dctP; C4-dicarboxylate-binding protein DctP
D CAV_0509 TRAP dicarboxylate transporter DctPQM, permease subunit DctQ K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit
D CAV_0508 TRAP dicarboxylate transporter DctPQM, permease subunit DctM K11690 dctM; C4-dicarboxylate transporter, DctM subunit
D CAV_1537 Na+/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter
D CAV_1074 arsenite efflux membrane protein K03893 arsB; arsenical pump membrane protein
D CAV_1058 anaerobic C4-dicarboxylate transporter, DcuC family K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D CAV_1724 anaerobic C4-dicarboxylate transporter, DcuC family K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D CAV_0643 murJ; lipid II flippase K03980 murJ; putative peptidoglycan lipid II flippase
D CAV_0696 putative membrane protein, predicted permease K24180 mleP; malate permease and related proteins
D CAV_1313 transporter, LysE family K06895 lysE; L-lysine exporter family protein LysE/ArgO
D CAV_0531 transporter, LysE family K05834 rhtB; homoserine/homoserine lactone efflux protein
D CAV_0924 branched-chain amino acid transport protein, AzlC family K26605 azlC; branched chain amino acid efflux pump
D CAV_0925 branched-chain amino acid transport protein, AzlD family K26606 azlD; branched chain amino acid efflux pump
D CAV_1014 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CAV_1345 tolA; Tol-Pal system subunit TolA K03832 tonB; periplasmic protein TonB
D CAV_1538 tonB; energy transduction protein TonB K03832 tonB; periplasmic protein TonB
D CAV_1343 pal; Tol-Pal system peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D CAV_1344 tolB; Tol-Pal system translocation protein TolB K03641 tolB; TolB protein
D CAV_1359 molybdopterin-containing oxidoreductase II, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CAV_1403 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CAV_0704 macA; macrolide-specific efflux protein, membrane fusion protein MacA K13888 macA; membrane fusion protein, macrolide-specific efflux system
D CAV_1465 putative ABC long-chain fatty acid transporter, fused permease and ATPase components K17938 sbmA; peptide/bleomycin uptake transporter
C 02044 Secretion system [BR:cavi02044]
D CAV_1231 cmeD; multidrug efflux system CmeDEF, outer membrane component CmeD K12340 tolC; outer membrane protein
D CAV_1621 ctsD; transformation system, type II secretion system secretin protein CtsD K02453 gspD; general secretion pathway protein D
D CAV_1259 ctsF; transformation system, type II secretion system membrane protein CtsF K02455 gspF; general secretion pathway protein F
D CAV_1179 ctsG; transformation system, putative pseudopilin protein CtsG K02456 gspG; general secretion pathway protein G
D CAV_0597 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CAV_0936 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CAV_0494 putative membrane protein, YGGT family K02221 yggT; YggT family protein
D CAV_0170 competence protein, ComEA family K02237 comEA; competence protein ComEA
D CAV_1743 putative competence protein K02238 comEC; competence protein ComEC
D CAV_0747 ctsW; transformation system, predicted amidophosphoribosyltransferase CtsW K02242 comFC; competence protein ComFC
D CAV_0971 flhA; flagellar export apparatus, flagellar biosynthetic protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CAV_0697 flhB; flagellar export apparatus, flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CAV_0838 flhB2; FlhB C-terminus-related protein K04061 flhB2; flagellar biosynthesis protein
D CAV_0178 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D CAV_0180 fliH; flagellar export apparatus, flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CAV_0018 fliI; flagellar export apparatus, flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CAV_1253 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CAV_0242 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CAV_0613 fliP; flagellar export apparatus, flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CAV_1634 fliQ; flagellar export apparatus, flagellar basal body protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CAV_0341 fliR; flagellar export apparatus, flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CAV_1108 type IV secretion system protein VirB6 K03201 virB6; type IV secretion system protein VirB6
D CAV_1197 putative thioredoxin-like protein, DsbA family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CAV_0831 type VI secretion system, ImcF family protein K11891 impL; type VI secretion system protein ImpL
D CAV_0830 type VI secretion system, DotU protein K11892 impK; type VI secretion system protein ImpK
D CAV_0829 type VI secretion system, ImpJ protein K11893 impJ; type VI secretion system protein ImpJ
D CAV_0822 tssG; type VI secretion system protein K11895 impH; type VI secretion system protein ImpH
D CAV_0821 tssF; type VI secretion system protein K11896 impG; type VI secretion system protein ImpG
D CAV_0820 tssE; type VI secretion system, baseplate protein K11897 impF; type VI secretion system protein ImpF
D CAV_0818 type VI secretion system, VipB protein K11900 impC; type VI secretion system protein ImpC
D CAV_0817 type VI secretion system, VipA protein K11901 impB; type VI secretion system protein ImpB
D CAV_0816 type VI secretion system, ImpA protein K11902 impA; type VI secretion system protein ImpA
D CAV_0819 type VI secretion system, secreted protein Hcp K11903 hcp; type VI secretion system secreted protein Hcp
D CAV_0823 type VI secretion system, ClpV1 family ATPase K11907 vasG; type VI secretion system protein VasG
D CAV_1182 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CAV_0776 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CAV_1123 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CAV_0777 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CAV_1458 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CAV_1618 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CAV_0523 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CAV_0666 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CAV_0775 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CAV_0902 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CAV_0344 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CAV_0719 twin arginine translocation system, TatB family protein K03117 tatB; sec-independent protein translocase protein TatB
D CAV_0718 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:cavi02042]
D CAV_1425 cdtA; cytolethal distending toxin, subunit CdtA K11013 cdtA; cytolethal distending toxin subunit A
D CAV_1424 cdtB; cytolethal distending toxin, subunit CdtB K11014 cdtB; cytolethal distending toxin subunit B
D CAV_1423 cdtC; cytolethal distending toxin, subunit CdtC K11015 cdtC; cytolethal distending toxin subunit C
D CAV_1336 hypothetical membrane protein (DUF21 domain), possible TlyC family hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:cavi02022]
D CAV_0955 cprS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CAV_1406 dccS; two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CAV_0454 racS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CAV_0956 cprR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CAV_1256 cosR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CAV_0455 racR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CAV_0532 flgS; two-component system, sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D CAV_0401 flgR; sigma54-dependent response regulator K02481 flgR; two-component system, NtrC family, response regulator
D CAV_0115 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CAV_1302 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CAV_1261 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CAV_0114 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
C 02035 Bacterial motility proteins [BR:cavi02035]
D CAV_0115 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CAV_0116 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CAV_1260 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CAV_1261 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CAV_1302 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CAV_0114 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CAV_1400 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0102 MCP-domain signal transduction protein (DUF3365 domain) K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1476 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1648 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_1706 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0152 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0171 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0188 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0204 Cache sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CAV_0180 fliH; flagellar export apparatus, flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CAV_0018 fliI; flagellar export apparatus, flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CAV_0613 fliP; flagellar export apparatus, flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CAV_1634 fliQ; flagellar export apparatus, flagellar basal body protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CAV_0341 fliR; flagellar export apparatus, flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D CAV_0971 flhA; flagellar export apparatus, flagellar biosynthetic protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CAV_0697 flhB; flagellar export apparatus, flagellar biosynthetic protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D CAV_0179 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CAV_0243 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CAV_1253 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CAV_0242 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CAV_0178 fliF; flagellar MS-ring protein K02409 fliF; flagellar M-ring protein FliF
D CAV_1274 flgI; flagellar P-ring protein K02394 flgI; flagellar P-ring protein FlgI
D CAV_1047 flgA; flagellar basal body P-ring biosynthesis protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CAV_0713 flgH; flagellar L-ring protein K02393 flgH; flagellar L-ring protein FlgH
D CAV_0353 fliL; flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D CAV_0742 fliE; flagellar proximal rod protein K02408 fliE; flagellar hook-basal body complex protein FliE
D CAV_0057 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CAV_0744 flgB; flagellar proximal rod protein K02387 flgB; flagellar basal-body rod protein FlgB
D CAV_0743 flgC; flagellar proximal rod protein K02388 flgC; flagellar basal-body rod protein FlgC
D CAV_0056 flgD; flagellar hook assembly protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CAV_0836 flgG2; flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D CAV_0837 flgG; flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D CAV_1273 putative flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D CAV_0055 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D CAV_0144 flgE2; flagellar hook protein, epsilonproteobacterial variant K02390 flgE; flagellar hook protein FlgE
D CAV_1270 flgK; flagellar hook-associated protein K02396 flgK; flagellar hook-associated protein 1
D CAV_0735 flgL; flagellar hook-associated protein K02397 flgL; flagellar hook-associated protein 3 FlgL
D CAV_0749 flgP; LPP20 family lipoprotein K09860 flgP; outer membrane protein FlgP
D CAV_0750 flgQ; flagellar-associated protein FlgQ K24346 flgQ; flagellar motility protein FlgQ
D CAV_0845 flaC; flagellar secreted protein K02406 fliC; flagellin
D CAV_1168 flaA; flagellin K02406 fliC; flagellin
D CAV_1170 flaB; flagellin K02406 fliC; flagellin
D CAV_0669 fliD; flagellar filament cap protein K02407 fliD; flagellar hook-associated protein 2
D CAV_0670 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CAV_0244 fliA; RNA polymerase sigma28 factor K02405 fliA; RNA polymerase sigma factor FliA
D CAV_0980 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CAV_0767 putative outer membrane protein K02557 motB; chemotaxis protein MotB
D CAV_0981 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CAV_0621 fliW; flagellar assembly protein K13626 fliW; flagellar assembly factor FliW
D CAV_0668 flaG; flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D CAV_0247 flhF; flagellar biosynthesis (GTP-binding) protein K02404 flhF; flagellar biosynthesis protein FlhF
D CAV_0246 flhG; flagellar biosynthesis protein K04562 flhG; flagellar biosynthesis protein FlhG
D CAV_0936 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:cavi04812]
D CAV_0150 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CAV_0651 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CAV_0652 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CAV_1356 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D CAV_1355 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:cavi04147]
D CAV_1024 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CAV_1631 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CAV_0679 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CAV_0678 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CAV_0417 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CAV_0987 ahpC; alkyl hydroperoxide reductase protein, peroxidase component K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D CAV_1145 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CAV_0967 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CAV_1523 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CAV_0363 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CAV_1126 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CAV_0794 PKCI-related HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CAV_1004 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CAV_1264 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CAV_0793 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CAV_0889 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CAV_0491 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CAV_0513 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CAV_0445 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CAV_0801 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CAV_0896 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CAV_0677 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:cavi02048]
D CAV_1432 hsdR1; type I restriction/modification system, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CAV_1585 hsdR2; type I restriction/modification system, R subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CAV_1434 hsdS1; type I restriction/modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CAV_1588 hsdS2; type I restriction/modification system, S subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CAV_1421 type I restriction/modification system, M subunit (HsdR N-terminal domain) K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CAV_1435 hsdM1; type I restriction/modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CAV_1589 hsdM2; type I restriction/modification system, M subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CAV_1673 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CAV_1593 adenine-specific DNA methyltransferase (EcoRI methylase) K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CAV_1710 DNA methyltransferase K24451 zim; modification methylase
D CAV_1436 type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D CAV_1440 adenine-specific DNA methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CAV_1165 toxin-antitoxin system, toxin component, RelE family K06218 relE; mRNA interferase RelE/StbE
D CAV_1409 putative DNA binding protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D CAV_0539 putative toxin-antitoxin system, toxin component, YafQ family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D CAV_0287 putative toxin-antitoxin system, toxin component, YafQ family K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D CAV_1577 putative toxin-antitoxin system, antitoxin component, RelB family K07473 dinJ; DNA-damage-inducible protein J
D CAV_0651 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CAV_0150 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CAV_0495 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1199 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CAV_1311 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:cavi01504]
D CAV_1651 aminoglycoside 6-adenylyltransferase K05593 aadK; aminoglycoside 6-adenylyltransferase [EC:2.7.7.-]
D CAV_1403 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CAV_1404 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CAV_1405 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CAV_1231 cmeD; multidrug efflux system CmeDEF, outer membrane component CmeD K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:cavi03100]
D CAV_1450 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CAV_1579 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CAV_0073 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CAV_0072 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CAV_0815 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CAV_0854 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CAV_1303 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CAV_1076 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CAV_1080 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CAV_1689 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CAV_0965 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CAV_0261 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CAV_1078 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CAV_0861 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CAV_1128 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CAV_1691 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CAV_0071 tRNA-His K14226 tRNA-His; tRNA His
D CAV_1449 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CAV_0074 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CAV_0734 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CAV_0787 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CAV_1690 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CAV_1079 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CAV_1082 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CAV_1075 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CAV_0005 tRNA-Met K14230 tRNA-Met; tRNA Met
D CAV_0466 tRNA-Met K14230 tRNA-Met; tRNA Met
D CAV_0964 tRNA-Met K14230 tRNA-Met; tRNA Met
D CAV_1091 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CAV_0070 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CAV_0992 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CAV_0004 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CAV_1688 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CAV_1130 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CAV_1127 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CAV_1124 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CAV_1129 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CAV_1077 tRNA-Val K14237 tRNA-Val; tRNA Val
D CAV_0067 tRNA-Val K14237 tRNA-Val; tRNA Val
D CAV_1081 tRNA-Val K14237 tRNA-Val; tRNA Val
D CAV_1365 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CAV_1451 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CAV_1364 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CAV_1448 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CAV_1363 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CAV_1447 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CAV_1536 srpB; bacterial signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D CAV_1016 rnpB; ribonuclease P, RNA component K01978 rnpB; M1 RNA
D CAV_1518 ssrA; 10Sa RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CAV_1677 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D CAV_1678 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D CAV_1695 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D CAV_1712 aldo/keto reductase K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D CAV_1442 saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D CAV_0029 flavodoxin-like fold domain protein, putative NAD(P)H (quinone) dehydrogenase/reductase K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D CAV_1515 yedY; periplasmic DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D CAV_1707 cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D CAV_0080 bcp; thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CAV_0834 tpx; lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CAV_0708 hydB; [NiFe] hydrogenase, large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D CAV_1139 [NiFe] hydrogenase, small subunit K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D CAV_0707 hydA; [NiFe] hydrogenase, small subunit K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D CAV_0762 cft; ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D CAV_1452 pcm; L-isoaspartate protein carboxylmethyltransferase, type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D CAV_0263 hemN1; oxygen-independent coproporphyrinogen III oxidase K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D CAV_0273 methyltransferase K05303 K05303; O-methyltransferase [EC:2.1.1.-]
D CAV_0774 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D CAV_1061 aat; leucyl, phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D CAV_1012 ate; arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D CAV_0416 pglB; undecaprenyl-diphosphooligosaccharide--protein glycotransferase K17251 pglB; undecaprenyl-diphosphooligosaccharide---protein glycotransferase [EC:2.4.99.19]
D CAV_0915 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CAV_0414 pglC; N,N'-diacetylbacilliosaminyl-1-phosphate transferase K15915 pglC; undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase [EC:2.7.8.36]
D CAV_0908 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CAV_0537 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D CAV_0999 tatD; ssDNA/RNA exonuclease, 3' - 5' specific K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CAV_0451 endonuclease, thermonuclease family K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D CAV_0013 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CAV_1059 cfiP; reactive intermediate/imine deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CAV_0169 alpha/beta hydrolase family protein K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D CAV_0010 carbohydrate kinase, YjeF-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CAV_0210 lig; DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D CAV_0329 copA; copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
D CAV_0506 heavy metal-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
C 99981 Carbohydrate metabolism
D CAV_0098 lldE; NAD-independent L-lactate dehydrogenase LldEFG, oxidoreductase subunit K18928 lldE; L-lactate dehydrogenase complex protein LldE
D CAV_0099 lldF; NAD-independent L-lactate dehydrogenase LldEFG, iron-sulfur cluster subunit K18929 lldF; L-lactate dehydrogenase complex protein LldF
D CAV_0100 lldG; NAD-independent L-lactate dehydrogenase LldEFG, subunit LldG K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D CAV_1310 iscU; iron-sulfur cluster assembly scaffold protein IscU K13819 K13819; NifU-like protein
D CAV_0499 napD; periplasmic nitrate reductase assembly protein K02570 napD; periplasmic nitrate reductase NapD
D CAV_0068 fldA; flavodoxin K03839 fldA; flavodoxin I
D CAV_0503 napG; menaquinol dehydrogenase NapGH, periplasmic component NapG K02573 napG; ferredoxin-type protein NapG
D CAV_0502 napH; menaquinol dehydrogenase NapGH, membrane component NapH K02574 napH; ferredoxin-type protein NapH
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D CAV_0858 type III pyridoxal 5-phosphate (PLP)-dependent enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D CAV_0462 glycosyltransferase, family 25 K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D CAV_0492 mobB; molybdenum cofactor guanylyltransferase protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
D CAV_0505 putative membrane protein, DoxX family K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
C 99974 Translation
C 99975 Protein processing
D CAV_1063 clpS; ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D CAV_0016 tig; trigger factor (peptidyl-prolyl cis/trans isomerase, chaperone) K03545 tig; trigger factor
D CAV_1516 yedZ; periplasmic DMSO/TMAO reductase YedYZ, heme-binding membrane subunit K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D CAV_1065 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CAV_1042 hypC; hydrogenase assembly chaperone HypC K04653 hypC; hydrogenase expression/formation protein HypC
D CAV_1041 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D CAV_1040 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D CAV_0809 hypF; [NiFe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D CAV_0012 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D CAV_0011 rmuC; DNA recombination protein K09760 rmuC; DNA recombination protein RmuC
D CAV_0786 magIII; 3-methyladenine DNA glycosylase K07457 K07457; endonuclease III related protein
D CAV_1553 UPF0102 domain protein K07460 yraN; putative endonuclease
D CAV_0606 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D CAV_1382 rarA; recombination factor protein RarA K07478 ycaJ; putative ATPase
D CAV_0405 wlaX; putative polysaccharide biosynthesis protein K07501 K07501; 3'-5' exonuclease
D CAV_0594 site-specific recombinase, phage integrase family K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D CAV_0227 YbaB/EbfC DNA-binding family protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CAV_1580 major facilitator superfamily transporter K03301 TC.AAA; ATP:ADP antiporter, AAA family
D CAV_0512 putative peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CAV_0789 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CAV_0790 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CAV_1662 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
C 99978 Cell growth
D CAV_0901 putative RNA-binding protein (Jag domain) K06346 jag; spoIIIJ-associated protein
D CAV_0688 allophanate hydrolase, subunit 1 K06351 kipI; inhibitor of KinA
C 99993 Cell motility
D CAV_0089 hypothetical lipoprotein (DUF3897 domain) K07337 K07337; penicillin-binding protein activator
C 99995 Signaling proteins
D CAV_1480 cstA; carbon starvation protein A K06200 cstA; carbon starvation protein
D CAV_0059 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D CAV_0318 putative nucleotide-binding protein (DUF520 domain) K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D CAV_1181 lolA; outer membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D CAV_1192 lipid asymmetry ABC transporter MlaABCDEF, lipoprotein MlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA
D CAV_1395 kpsS; capsular polysaccharide export protein K07265 kpsS; capsular polysaccharide export protein
D CAV_1394 kpsC; capsular polysaccharide export protein (two domain) K07266 kpsC; capsular polysaccharide export protein
C 99994 Others
D CAV_1583 putative CutA1 divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D CAV_1408 hemerythrin-like metal-binding domain protein K07216 hr; hemerythrin
D CAV_0985 hemerythrin-like metal-binding domain protein K07216 hr; hemerythrin
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CAV_0423 putative membrane protein, CvpA family K03558 cvpA; membrane protein required for colicin V production
D CAV_1735 putative FlgJ-related protein (Bax domain) K03796 bax; Bax protein
D CAV_0638 ctb; group III truncated hemoglobin K06886 glbN; hemoglobin
D CAV_0661 virulence factor, BrkB family protein K07058 K07058; membrane protein
D CAV_0428 sporulation domain protein K03749 dedD; DedD protein
C 99997 Function unknown
D CAV_1643 ankyrin domain protein K06867 K06867; uncharacterized protein
D CAV_0483 ankyrin domain protein K06867 K06867; uncharacterized protein
D CAV_0469 fibronectin type III domain-containing protein K06882 K06882; uncharacterized protein
D CAV_0035 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D CAV_1674 alpha/beta hydrolase family protein K06889 K06889; uncharacterized protein
D CAV_0533 DUF234 domain protein K06921 K06921; uncharacterized protein
D CAV_0785 ATPase (AAA+ superfamily, DUF815 domain) K06923 K06923; uncharacterized protein
D CAV_0479 CoA-binding domain protein K06929 K06929; uncharacterized protein
D CAV_1235 predicted Fe-S cluster-containing protein K06940 K06940; uncharacterized protein
D CAV_0683 sodium/dicarboxylate symporter, putative L-cystine uptake protein K06956 K06956; uncharacterized protein
D CAV_0525 putative RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein
D CAV_1533 peptidase, C39 family K06992 K06992; uncharacterized protein
D CAV_1194 RND superfamily exporter K07003 K07003; uncharacterized protein
D CAV_0975 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D CAV_1268 putative membrane protein, TauE/SafE family permease K07090 K07090; uncharacterized protein
D CAV_1564 phosphatase, PhoX family (DUF839 domain) K07093 K07093; uncharacterized protein
D CAV_0970 DHH-type phosphohydrolase K07097 K07097; uncharacterized protein
D CAV_0496 metallophosphatase K07098 K07098; uncharacterized protein
D CAV_0856 fdhT; formate dehydrogenase biogenesis protein FdhT K07112 K07112; uncharacterized protein
D CAV_0172 putative NADH-flavin reductase K07118 K07118; uncharacterized protein
D CAV_0897 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CAV_0909 Sel1 domain repeat-containing protein K07126 K07126; uncharacterized protein
D CAV_1739 ATPase, AAA family (DUF4143 domain) K07133 K07133; uncharacterized protein
D CAV_0520 zinc ribbon domain protein (DUF164 domain) K07164 K07164; uncharacterized protein
D CAV_0903 putative membrane protein insertion efficiency factor, YidD family K08998 K08998; uncharacterized protein
D CAV_0157 putative membrane protein (DsbD domain) K09792 K09792; uncharacterized protein
D CAV_0432 DUF465 domain protein K09794 K09794; uncharacterized protein
D CAV_0760 putative periplasmic SGNH family hydrolase K09795 K09795; uncharacterized protein
D CAV_0607 divergent polysaccharide deacetylase K09798 K09798; uncharacterized protein
D CAV_0159 DUF507 domain protein K09804 K09804; uncharacterized protein
D CAV_0087 hypothetical protein K09859 K09859; uncharacterized protein
D CAV_0437 DUF328 domain protein K09861 K09861; uncharacterized protein
D CAV_0626 putative membrane protein K09943 K09943; uncharacterized protein
D CAV_0852 putative TrkA domain protein K09944 K09944; uncharacterized protein
D CAV_0378 pyridoxine 5'-phosphate oxidase family protein K09979 K09979; uncharacterized protein
D CAV_0346 putative transcriptional regulator (zinc finger domain protein) K09981 K09981; uncharacterized protein
D CAV_0131 putative nucleic-acid-binding protein (DUF448 domain) K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 27, 2024