+E	Ribosome biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Ribosome Biogenesis - Corynebacterium atypicum</h2>
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A<b>Eukaryotic type</b>
B  Sno RNPs
C    Box C/D snoRNPs
C    Box H/ACA snoRNPs
B  90S particles
C    U3 small nucleolar RNA-associated proteins
C    Helicases
C    GTPase
C    RNase
D      CATYP_03845 ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
C    Kinase
C    Other 90S particles
B  Pre-40S particles
C    Kinases
C    Export and cytoplasmic maturation factors
C    Other pre-40S particles
B  Pre-60S particles
C    Helicases
C    GTPases
C    RNases
D      CATYP_08355 oligoribonuclease	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      RNase MRP
C    Kinases
C    Export and cytoplasmic maturation factors
C    5-FMC complex
C    Ribosome quality control proteins
C    Other pre-60S particles
B  Other ribosome biogenesis factors
C    CATYP_07815 GTPase Era	K03595 era; GTPase 
C    CATYP_08085 obgE; GTPase CgtA	K03979 obgE; GTPase [EC:3.6.5.-] 
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A<b>Prokaryotic type</b>
B  Sno RNPs
C    Box C/D snoRNPs
C    Box H/ACA snoRNPs
B  rRNA transcription factors
C    CATYP_04165 transcription elongation factor NusA	K02600 nusA; transcription termination/antitermination protein NusA 
C    CATYP_01840 antitermination protein	K02601 nusG; transcription termination/antitermination protein NusG 
B  rRNA modification factors
C    16S rRNA modification factors
D      CATYP_04915 MFS transporter	K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] 
D      CATYP_07840 hypothetical protein	K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] 
D      CATYP_10450 16S rRNA methyltransferase	K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] 
D      CATYP_03395 16S rRNA methyltransferase	K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] 
D      CATYP_05645 cytochrome C oxidase subunit II	K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] 
C    23S rRNA modification factors
D      CATYP_06815 SAM-dependent methyltransferase	K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187] 
D      CATYP_08960 rRNA methyltransferase	K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] 
D      CATYP_04090 ribosomal RNA large subunit methyltransferase N	K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] 
D      CATYP_05645 cytochrome C oxidase subunit II	K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] 
D      CATYP_05590 hypothetical protein	K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] 
D      CATYP_07235 pseudouridine synthase	K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] 
B  ribosomal protein modification factors
C    CATYP_02355 alanine acetyltransferase	K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] 
C    CATYP_03975 16S rRNA processing protein RimM	K02860 rimM; 16S rRNA processing protein RimM 
B  rRNA processing factors
C    CATYP_03845 ribonuclease III	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
C    CATYP_08100 hypothetical protein	K08300 rne; ribonuclease E [EC:3.1.26.12] 
B  rRNA helicases
B  GTPases
C    CATYP_07815 GTPase Era	K03595 era; GTPase 
C    CATYP_02805 GTPase EngC	K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] 
C    CATYP_05585 hypothetical protein	K03977 engA; GTPase 
C    CATYP_08085 obgE; GTPase CgtA	K03979 obgE; GTPase [EC:3.6.5.-] 
B  Other maturation factors
C    CATYP_06410 hypothetical protein	K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] 
C    CATYP_04695 GTP pyrophosphokinase	K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] 
C    CATYP_04175 ribosome-binding factor A	K02834 rbfA; ribosome-binding factor A 
C    CATYP_00355 hypothetical protein	K14761 rlbA; ribosome-associated protein 
C    CATYP_08050 Iojap	K09710 ybeB; ribosome-associated protein 
C    CATYP_07830 heat-shock protein	K07042 ybeY; probable rRNA maturation factor 
C    CATYP_03760 GTP-binding protein	K06942 ychF; ribosome-binding ATPase 
C    CATYP_03840 DNA-binding protein	K07040 yceD; DUF177 domain-containing protein 
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A<b>Related small nucleolar RNAs</b>
B  Box C/D snoRNAs
C    SnoRNAs involved in processing reactions
C    SnoRNAs act as guides for 2'-O-ribose methylation
B  Box H/ACA snoRNAs
C    SnoRNAs involved in processing reactions
C    SnoRNAs act as guides for pseudouridynation
B  Other snoRNA
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#Last updated: August 9, 2024