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Transcription Machinery - Clostridium acetobutylicum EA 2018
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AEukaryotic type
B RNA polymerase II system
C RNA polymerase II
D Core subunits
D Pol II specific subunits
D Pol I, II, III common subunits
D Pol IV and V specific subunits
C Basal transcription factors
D TFIIA
D TFIIB
D TFIID
D TFIIE
D TFIIF
D TFIIH
E CEA_G1685 Rad3-related DNA helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C Mediator complex
D Head
D Middle
D Tail
D CDK-module
D Other mediators
C Coactivators
D SAGA/TFTC/STAGA complex
D BAF/PBAF complex
D SWI/SNF complex
D RSC complex
D Others
C Other transcription-related factors
D Transcription elongation factors
D Transcription termination factor
D PAF1 complex
D NELF complex
D Super elongation complex (SEC)
D Little elongation complex (LEC)
D Brd4/P-TEFb complex
D BUR kinase complex
D CTDK-I complex
D 7SK RNP complex
D DBIRD complex
D Others
B RNA polymerase III system
C RNA polymerase III
D Core subunits
D Pol III specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D TFIIIA
D TFIIIB
D TFIIIC
D TFIIIC, fungi type
C Other transcription-related factors
D snRNA-activating protein complex (SNAPc)
D Octamer transcription factors
D Others
B RNA polymerase I system
C RNA polymerase I
D Core subunits
D Pol I specific subunits
D Pol I, II, III common subunits
C Basal transcription factors
D SL1/TIF-1B
C Other transcription-related factors
D UBF
D Transcription initiation factors
D Transcription elongation factors
D NoRC (nucleolar remodeling complex)
D CTDK-I complex
D Transcription termination factors
D Others
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AProkaryotic type
B Bacterial type
C RNA polymerase
D Core subunits
E CEA_G3110 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
E CEA_G3147 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
E CEA_G3146 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
E CEA_G1732 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D Sigma factors
E CEA_G1313 major vegetative sigma factor K03086 rpoD; RNA polymerase primary sigma factor
E CEA_G1239 sigA; RNA polymerase sigma factor K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
E CEA_G1779 RNA polymerase factor sigma-70 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E CEA_G3269 Specialized sigma subunit of RNA polymerase K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E CEA_G1524 Specialized sigma subunit of RNA polymerase K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
E CEA_G2321 sporulation sigma factor SigF K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E CEA_G1702 sigK; sporulation sigma factor SigK K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E CEA_G1708 sigE; sporulation sigma factor SigE K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E CEA_G1709 sigG; sporulation sigma factor SigG K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
E CEA_G3156 RNA polymerase factor sigma-70 K27000 sigH; RNA polymerase sigma-H factor
E CEA_G1782 putative RNA polymerase sigma factor SigI K03093 sigI; RNA polymerase sigma-I factor
E CEA_G0718 rpoN; RNA polymerase factor sigma-54 K03092 rpoN; RNA polymerase sigma-54 factor
E CEA_G2157 sigD; Sigma factor of SigD/WhiG family K02405 fliA; RNA polymerase sigma factor FliA
C Other transcription-related factors
D RNA polymerase-associated proteins
E CEA_G1812 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
E CEA_G2098 nusB; transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
E CEA_G3152 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D Transcription elongation factors
E CEA_G1982 Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E CEA_G3202 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
E CEA_G2444 greA; Transcription elongation factor, greA K03624 greA; transcription elongation factor GreA
D Transcription termination factor
E CEA_G2896 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
B Archaeal type
C RNA polymerase
D Core subunits
C Basal transcription factors
D TFB
D TFE
D TFS
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 9, 2024