+E	Transcription factors	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Transcription Factors - Clostridium botulinum A ATCC 19397</h2>
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A<b>Eukaryotic type</b>
B  Basic leucine zipper (bZIP)
C    AP-1(-like) components, Jun
C    AP-1(-like) components, Fos
C    AP-1(-like) components, Maf
C    AP-1(-like) components, NF-E2
C    AP-1(-like) components, Fungal regulators
C    AP-1(-like) components, CRE-BP/ATF
C    CREB
C    C/EBP-like factors
C    bZIP/PAR
C    Plant bZIP factors
C    ZIP only
B  Basic helix-loop-helix (bHLH)
C    Ubiquitous (class A) factors
C    Myogenic transcription factors
C    Achaete-Scute
C    Tal/Twist/Atonal/Hen, Lymphoid factors
C    Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C    Tal/Twist/Atonal/Hen, HEN
C    Tal/Twist/Atonal/Hen, Mesp
C    Tal/Twist/Atonal/Hen, Atonal
C    Tal/Twist/Atonal/Hen, Pancreatic factors
C    Hairy, Hairy/E(SPL)
C    Hairy, Fungal regulators
C    Factors with PAS domain
C    Yabby
C    INO
C    HLH domain only
B  Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C    Ubiquitous bHLH-ZIP factors
C    Cell cycle controlling factors, Myc
C    Cell cycle controlling factors, Mad/Max
C    Other bHLH-ZIP factors
B  Other basic domains
C    NF-1
C    RF-X
C    AP-2 (bHSH)
B  Zinc finger
C    Cys4 thyroid hormone receptor-like
C    Cys4 hepatocyte nuclear factor 4-like
C    Cys4 estrogen receptor-like
C    Cys4 nerve growth factor IB-like
C    Cys4 Fushi tarazu-F1-like
C    Cys4 germ cell nuclear factor
C    Cys4 Knirps/DAX1-like
C    Cys4 GATA-factors
C    Cys2His2 SP/KLF family and related proteins
C    Cys2His2 GLI-like
C    Cys2His2 Snail
C    Cys2His2 BTB-ZF factors
C    Cys2His2 BED
C    Cys2His2 PRDM
C    Cys2His2 metabolic regulators in fungi
C    Cys2His2 others
C    Cys2HisCys zinc factors
C    Cys3His zinc factors
C    Cys2CysHis zinc factors
C    CXXC CpG-binding proteins
D      CLB_2465 DNA-cytosine methyltransferase family protein	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      CLB_2811 DNA-cytosine methyltransferase family protein	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
D      CLB_2985 DNA-cytosine methyltransferase family protein	K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] 
C    Cys6 metabolic regulators in fungi
C    Other zinc fingers
B  Helix-turn-helix
C    Homeo domain ANTP: HOXL
C    Homeo domain ANTP: NKL
C    Homeo domain Paired-related
C    Homeo domain LIM
C    Homeo domain POU
C    Homeo domain SINE
C    Homeo domain ZF
C    Homeo domain CUT
C    Homeo domain PROS
C    Homeo domain TALE
C    Homeo domain other
C    Fork head/winged helix developmental regulators
C    Fork head/winged helix tissue-specific regulators
C    Fork head/winged helix cell cycle-controlling factors, E2F
C    Fork head/winged helix cell cycle-controlling factors, DP
C    Fork head/winged helix other regulators
C    Heat shock factors
C    Tryptophan clusters Myb, Myb-factors
C    Tryptophan clusters Myb, Myb-like factors
C    Tryptophan clusters Ets-type
C    Tryptophan clusters interferon-regulating factors
C    TEA domain
C    ARID
B  beta-Scaffold factors with minor groove contacts
C    RHR (Rel homology region) Rel/Ankyrin
C    RHR (Rel homology region) Ankyrin only
C    RHR (Rel homology region) NF-AT
C    STAT
C    p53
C    MADS-box regulators of differentiation, MEF-2
C    MADS-box regulators of differentiation, Homeotic genes
C    MADS-box regulators of differentiation, Yeast regulators
C    MADS-box responders to external signals
C    SAND domain-containing proteins
C    TATA-binding proteins
C    HMG SOX
C    HMG TCF-1
C    HMG2-related
C    UBF
C    Other HMG box factors
C    Heteromeric CCAAT factors
C    Grainyhead
C    Cold-shock domain factors, DbpA-like
C    Cold-shock domain factors, YB-1/DbpB-like
C    Cold-shock domain factors, FRG Y2-like
C    Runt
C    MYRF
B  Other transcription factors
C    HMGI(Y)
C    NUPR
E        Line #4
C    Pocket domain Rb
C    Pocket domain CBP
C    T-box
C    DMRT
C    LRRFIP
C    TCP
C    AP2/ERF
C    WRKY
C    LOB
C    Copper-fist proteins fungal regulators
C    Others
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A<b>Prokaryotic type</b>
B  Helix-turn-helix
C    AraC family
D      CLB_3656 transcriptional regulator, AraC family	K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator 
D      CLB_0742 transcriptional regulator, AraC family	K13652 K13652; AraC family transcriptional regulator 
D      CLB_0821 transcriptional regulator, AraC family	K13653 K13653; AraC family transcriptional regulator 
D      CLB_0753 transcriptional regulator, AraC family	K13653 K13653; AraC family transcriptional regulator 
D      CLB_2035 transcriptional regulator, AraC family	K13653 K13653; AraC family transcriptional regulator 
D      CLB_2103 transcriptional regulator, AraC family	K13653 K13653; AraC family transcriptional regulator 
D      CLB_0642 transcriptional regulator, AraC family	K13653 K13653; AraC family transcriptional regulator 
C    LysR family
D      CLB_1598 transcriptional regulator, LysR family	K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon 
C    DeoR family
D      CLB_2149 transcriptional regulator, DeoR family	K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor 
D      CLB_0199 spoIIID; stage III sporulation protein D	K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D 
D      CLB_1635 transcriptional regulator, DeoR family	K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator 
D      CLB_2906 CBS domain protein	K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator 
C    LacI family
D      CLB_0136 transcriptional regulator, LacI family	K02529 galR; LacI family transcriptional regulator, galactose operon repressor 
C    GntR family
D      CLB_1929 treR; trehalose operon repressor	K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor 
D      CLB_2779 transcriptional regulator, GntR family	K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator 
D      CLB_1131 transcriptional regulator, GntR family	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
D      CLB_1541 transcriptional regulator, GntR family	K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex 
D      CLB_0916 transcriptional regulator, GntR family	K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase 
D      CLB_0677 transcriptional regulator, GntR family/aminotransferase	K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase 
D      CLB_2733 transcriptional regulator, GntR family	K07979 ytrA; GntR family transcriptional regulator 
C    TetR/AcrR family
D      CLB_1224 transcriptional regulator, TetR family	K09017 rutR; TetR/AcrR family transcriptional regulator 
D      CLB_1534 transcriptional regulator, TetR family	K09017 rutR; TetR/AcrR family transcriptional regulator 
C    Lrp/AsnC family
D      CLB_0566 transcriptional regulator, AsnC family	K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 
D      CLB_0883 transcriptional regulator, AsnC family	K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 
C    LuxR family
C    MarR family
D      CLB_0110 transcriptional regulator, MarR family	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
D      CLB_2203 transcriptional regulator, MarR family	K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator 
C    MerR family
C    Fur family
D      CLB_2501 transcriptional regulator, Fur family	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      CLB_1396 transcriptional regulator, Fur family	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      CLB_2774 transcriptional regulator, Fur family	K03711 fur; Fur family transcriptional regulator, ferric uptake regulator 
D      CLB_3256 transcriptional regulator, Fur family	K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator 
C    IclR family
C    CRP/FNR family
D      CLB_0997 transcriptional regulator, Crp/Fnr family	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
D      CLB_1363 transcriptional regulator, Crp/Fnr family	K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein 
D      CLB_0695 transcriptional regulator, Crp/Fnr family	K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein 
D      CLB_1064 cyclic nucleotide-binding domain protein	K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator 
D      CLB_1569 cyclic nucleotide-binding domain protein	K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator 
C    Rrf2 family
D      CLB_1209 rrf2 family protein	K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor 
D      CLB_2510 rrF2 family protein	K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor 
C    ArsR family
D      CLB_0795 arsR; putative arsenical resistance operon repressor ArsR	K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor 
D      CLB_0517 putative cadmium resistance transcriptional regulator CadC	K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor 
C    XRE family
D      CLB_0664 DNA-binding/cupin domain protein	K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization 
C    PadR family
D      CLB_0133 transcriptional regulator, PadR family	K10947 K10947; PadR family transcriptional regulator 
D      CLB_0463 transcriptional regulator, PadR family	K10947 K10947; PadR family transcriptional regulator 
D      CLB_2250 transcriptional regulator, PadR family	K10947 K10947; PadR family transcriptional regulator 
C    Other families
D      CLB_0358 putative iron-dependent repressor	K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator 
D      CLB_1561 putative iron-dependent repressor	K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator 
D      CLB_1156 birA; birA bifunctional protein	K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] 
D      CLB_0775 putative DNA-binding protein	K22299 rghR; HTH-type transcriptional regulator, competence development regulator 
D      CLB_3628 purR; pur operon repressor	K09685 purR; HTH-type transcriptional regulator, purine operon repressor 
D      CLB_1645 acoR; aco operon transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CLB_1663 sensory box sigma-54 dependent transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CLB_1875 aorR; aor transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CLB_1659 sensory box sigma-54 dependent transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CLB_3232 sigma-54 dependent transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CLB_0635 sigma-54 dependent transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CLB_1950 putative sigma-54 dependent transcriptional regulator	K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR 
D      CLB_3362 rex; redox-sensing transcriptional repressor Rex	K01926 rex; redox-sensing transcriptional repressor 
D      CLB_2300 codY; GTP-sensing transcriptional pleiotropic repressor CodY	K03706 codY; transcriptional pleiotropic repressor 
D      CLB_2080 conserved hypothetical protein	K07727 K07727; putative transcriptional regulator 
D      CLB_0510 conserved hypothetical protein	K07727 K07727; putative transcriptional regulator 
D      CLB_2235 putative DNA-binding protein	K07729 K07729; putative transcriptional regulator 
D      CLB_0805 DNA-binding protein	K07729 K07729; putative transcriptional regulator 
D      CLB_1967 DNA-binding protein	K07729 K07729; putative transcriptional regulator 
D      CLB_0583 putative DNA-binding protein	K07729 K07729; putative transcriptional regulator 
D      CLB_1277 putative DNA-binding protein	K07729 K07729; putative transcriptional regulator 
D      CLB_3071 DNA-binding protein	K07729 K07729; putative transcriptional regulator 
D      CLB_2426 putative DNA-binding protein	K07729 K07729; putative transcriptional regulator 
D      CLB_2947 putative DNA-binding protein	K07729 K07729; putative transcriptional regulator 
B  Ribbon-helix-helix
C    CopG family
D      CLB_3453 conserved hypothetical protein	K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI 
C    Other families
B  Other transcription factors
C    BglG family
D      CLB_0919 licT; transcription antiterminator LicT	K03488 licT; beta-glucoside operon transcriptional antiterminator 
D      CLB_0692 licT; transcriptional antiterminator, LicT	K03488 licT; beta-glucoside operon transcriptional antiterminator 
D      CLB_2696 transcriptional antiterminator, BglG family	K03480 glcT; transcriptional antiterminator 
D      CLB_2780 transcriptional antiterminator, BglG family	K03480 glcT; transcriptional antiterminator 
D      CLB_2088 putative PRD domain protein/PTS system, L-ascorbate family, IIA component	K03483 mtlR; mannitol operon transcriptional activator 
C    Others
D      CLB_1331 conserved hypothetical protein	K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor 
D      CLB_2539 conserved hypothetical protein	K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor 
D      CLB_0099 transcriptional regulator, AbrB family	K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes 
D      CLB_3618 stage V sporulation protein T	K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T 
D      CLB_3731 stage 0 sporulation protein J	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      CLB_3733 parB family protein	K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein 
D      CLB_2711 glpP; glycerol uptake operon antiterminator regulatory protein	K02443 glpP; glycerol uptake operon antiterminator 
D      CLB_1815 argR; arginine repressor	K03402 argR; transcriptional regulator of arginine metabolism 
D      CLB_2925 hrcA; heat-inducible transcription repressor HrcA	K03705 hrcA; heat-inducible transcriptional repressor 
D      CLB_3572 ctsR; transciptional repressor CtsR	K03708 ctsR; transcriptional regulator of stress and heat shock response 
D      CLB_0038 putative sensory box sigma-54 dependent transcriptional regulator	K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport 
D      CLB_0266 cggR; transcriptional regulator, SorC family	K05311 cggR; central glycolytic genes regulator 
D      CLB_1582 deoR; deoxyribonucleoside regulator	K05346 deoR; deoxyribonucleoside regulator 
D      CLB_1502 pyrR_1; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] 
D      CLB_2764 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase	K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] 
D      CLB_2406 nrdR; transcriptional regulator NrdR	K07738 nrdR; transcriptional repressor NrdR 
D      CLB_1478 mraZ; mraZ protein	K03925 mraZ; transcriptional regulator MraZ 
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#Last updated: June 7, 2024
#<br>Classification taken and modified from <a href="http://www.gene-regulation.com/pub/databases.html#transfac">TRANSFAC 7.0</a>