+D GENES KO
#
KEGG Orthology (KO) - Clostridium botulinum B1 Okra
%
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A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:cbb00010]
D CLD_2951 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLD_1244 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLD_1135 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLD_1949 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLD_0233 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLD_0586 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLD_0547 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLD_0549 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLD_3465 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D CLD_0548 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CLD_0546 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CLD_0545 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLD_1136 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CLD_1604 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLD_2922 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_3375 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1814 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1083 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLD_1084 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLD_3035 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLD_0407 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_1425 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0855 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_3314 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D CLD_2273 gapN; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D CLD_1160 glycosyl hydrolase, family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLD_3684 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLD_3366 putative beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLD_1716 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLD_0481 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0460 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0472 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0462 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_0484 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_1820 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLD_3231 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
C 00020 Citrate cycle (TCA cycle) [PATH:cbb00020]
D CLD_0326 HMGL-related enzyme K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3]
D CLD_0325 putative aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CLD_0324 dehydrogenase, isocitrate/isopropylmalate family K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_1083 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLD_1084 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLD_1085 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CLD_1082 putative 2-oxoacid:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CLD_1063 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CLD_1064 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CLD_1211 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D CLD_2922 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CLD_3375 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1814 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:cbb00030]
D CLD_1244 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLD_0114 conserved hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31]
D CLD_2135 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CLD_1114 transketolase, pyridine binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLD_1113 transketolase, thiamine diphosphate binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLD_3275 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CLD_2482 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CLD_0642 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CLD_2989 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D CLD_2988 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D CLD_1425 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0855 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0939 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CLD_0458 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D CLD_3314 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D CLD_2273 gapN; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9]
D CLD_0457 kinase, pfkB family K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
D CLD_2688 aor; aldehyde ferredoxin oxidoreductase, tungsten-containing K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5]
D CLD_0586 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLD_1949 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLD_0233 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLD_1135 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
C 00040 Pentose and glucuronate interconversions [PATH:cbb00040]
D CLD_1427 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLD_2135 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CLD_1088 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D CLD_2493 oxidoreductase, zinc-binding dehydrogenase family K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D CLD_3298 araD; L-ribulose-5-phosphate 4-epimerase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:cbb00051]
D CLD_0338 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLD_0684 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CLD_3298 araD; L-ribulose-5-phosphate 4-epimerase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D CLD_1135 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLD_1949 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLD_0233 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLD_1093 srlD; sorbitol-6-phosphate 2-dehydrogenase K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140]
D CLD_2876 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D CLD_1088 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D CLD_2493 oxidoreductase, zinc-binding dehydrogenase family K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14]
D CLD_0586 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLD_0547 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLD_0642 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CLD_1092 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CLD_1091 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CLD_1090 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D CLD_3590 dhaKL; dihydroxyacetone kinase, DhaK/DhaL subunit
C 00052 Galactose metabolism [PATH:cbb00052]
D CLD_1795 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_1886 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_2540 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_1427 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLD_1425 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0855 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_2951 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLD_1880 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CLD_1135 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLD_2631 class II aldolase, tagatose bisphosphate family K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40]
D CLD_2950 glycosyl hydrolase, family 13 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
C 00053 Ascorbate and aldarate metabolism [PATH:cbb00053]
D CLD_2483 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CLD_2484 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CLD_2485 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00500 Starch and sucrose metabolism [PATH:cbb00500]
D CLD_3191 phosphotransferase system domain protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D CLD_2950 glycosyl hydrolase, family 13 K01187 malZ; alpha-glucosidase [EC:3.2.1.20]
D CLD_1427 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLD_1164 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CLD_1163 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CLD_1161 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component
D CLD_1160 glycosyl hydrolase, family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLD_3684 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLD_3366 putative beta-glucosidase K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLD_1716 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86]
D CLD_0481 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0460 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0472 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0462 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_0484 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_2949 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D CLD_0475 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CLD_2948 endonuclease/exonuclease/phosphatase family protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90]
D CLD_0473 glvA; maltose-6'-phosphate glucosidase K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122]
D CLD_0461 glvA; maltose-6'-phosphate glucosidase K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122]
D CLD_2638 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CLD_2637 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93]
D CLD_1425 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0855 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_2951 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLD_1244 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cbb00520]
D CLD_3501 chiA; chitinase A K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D CLD_1742 glycosyl hydrolase, family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D CLD_3478 putative glycosyl hydrolase K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D CLD_0024 glycosyl hydrolase, family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14]
D CLD_0481 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0460 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0472 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_1733 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CLD_1740 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D CLD_1741 nagB; glucosamine-6-phosphate isomerase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D CLD_1096 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLD_1086 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CLD_0938 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CLD_3192 murQ; N-acetylmuramic acid 6-phosphate etherase K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126]
D CLD_0918 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLD_0626 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLD_1130 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLD_0637 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CLD_1432 UDP-glucose/GDP-mannose dehydrogenase family K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D CLD_1433 oxidoreductase, NAD-binding Rossmann fold family K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D CLD_3738 putative pleiotropic regulatory protein DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CLD_1440 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
D CLD_1853 UDP-N-acetylglucosamine 2-epimerase K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D CLD_1854 N-acylneuraminate-9-phosphate synthase K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D CLD_0462 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_0484 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_1820 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLD_3231 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLD_2951 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLD_1425 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0855 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_1427 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLD_1795 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_1886 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_2540 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_1880 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CLD_1244 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLD_0338 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLD_0684 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CLD_1860 spore coat polysaccharide biosynthesis protein SpsC K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00620 Pyruvate metabolism [PATH:cbb00620]
D CLD_3375 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1814 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1083 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLD_1084 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLD_2922 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_1316 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CLD_2533 eutE; acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D CLD_0407 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLD_2181 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLD_2180 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLD_1136 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CLD_0892 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CLD_0888 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CLD_0890 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CLD_0891 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_3557 putative glycolate oxidase K26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436]
D CLD_3558 electron transfer flavoprotein, alpha subunit/FixB family protein K26114 lctC; lactate dehydrogenase (NAD+,ferredoxin) subunit LctC
D CLD_3559 electron transfer flavoprotein, beta subunit/FixA family protein K26115 lctB; lactate dehydrogenase (NAD+,ferredoxin) subunit LctB
D CLD_3035 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLD_1240 ldhA; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28]
D CLD_3583 oxidoreductase, aldo/keto reductase family K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-]
D CLD_2397 glyoxalase family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D CLD_3024 glyoxalase family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5]
D CLD_1483 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CLD_3560 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D CLD_2826 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D CLD_2606 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1]
D CLD_0565 malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CLD_0518 malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CLD_1211 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D CLD_1063 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CLD_1064 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CLD_1604 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cbb00630]
D CLD_0325 putative aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_1707 catalase K03781 katE; catalase [EC:1.11.1.6]
D CLD_0920 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLD_1970 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLD_0068 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLD_0067 gcvPB; glycine cleavage system P protein, subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLD_0070 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0069 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CLD_2341 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CLD_0458 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42]
D CLD_3707 oxdD; oxalate decarboxylase K01569 oxdD; oxalate decarboxylase [EC:4.1.1.2]
C 00640 Propanoate metabolism [PATH:cbb00640]
D CLD_2181 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLD_2180 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_1316 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CLD_1332 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D CLD_0892 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CLD_0888 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CLD_0890 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CLD_0891 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CLD_3035 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLD_3589 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CLD_2625 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CLD_3583 oxidoreductase, aldo/keto reductase family K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-]
C 00650 Butanoate metabolism [PATH:cbb00650]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_1330 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CLD_1329 crt; 3-hydroxybutyryl-CoA dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17]
D CLD_1332 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D CLD_1723 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLD_1722 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D CLD_1080 buk; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D CLD_1078 buk_2; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7]
D CLD_1421 phosphate acetyl/butyryl transferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D CLD_1079 ptb; phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19]
D CLD_2533 eutE; acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10]
D CLD_0407 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLD_3130 bdhA; NADH-dependent butanol dehydrogenase K00100 bdhAB; butanol dehydrogenase [EC:1.1.1.-]
D CLD_2710 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLD_1316 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CLD_3375 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1814 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1083 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLD_1084 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLD_1638 adh; NADP-dependent alcohol dehydrogenase K23259 adh; isopropanol dehydrogenase (NADP+) [EC:1.1.1.80]
D CLD_2359 oxidoreductase, zinc-binding dehydrogenase family K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303]
C 00660 C5-Branched dibasic acid metabolism
C 00562 Inositol phosphate metabolism [PATH:cbb00562]
D CLD_1931 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D CLD_0547 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:cbb00190]
D CLD_2791 putative iron hydrogenase, gamma subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D CLD_2792 putative iron hydrogenase, electron-transfer subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CLD_2793 iron hydrogenase 1 K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D CLD_0631 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CLD_0629 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CLD_0630 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CLD_0632 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CLD_0628 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CLD_0635 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CLD_0633 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CLD_0634 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CLD_1940 ntpA; V-type sodium ATPase, catalytic A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1]
D CLD_1941 ntpB; V-type sodium ATPase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B
D CLD_1938 ntpC; V-type sodium ATPase, C subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C
D CLD_1942 ntpD; V-type sodium ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D
D CLD_1937 ntpE; V-type sodium ATPase, E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E
D CLD_1939 ntpG; V-type sodium ATPase, G subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F
D CLD_1934 putative V-type ATPase subunit K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D CLD_2304 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H
D CLD_1935 ntpI; V-type sodium ATPase, I subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I
D CLD_1936 ntpK; V-type sodium ATPase, K subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K
D CLD_1928 putative manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:cbb00710]
D CLD_0548 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CLD_0549 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLD_3465 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59]
D CLD_0586 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLD_1949 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLD_0233 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLD_1114 transketolase, pyridine binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLD_1113 transketolase, thiamine diphosphate binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLD_0642 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CLD_0547 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CLD_2135 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CLD_3275 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CLD_2482 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CLD_1604 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
C 00720 Other carbon fixation pathways [PATH:cbb00720]
D CLD_3375 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1814 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CLD_1604 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1]
D CLD_1211 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D CLD_1063 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CLD_1064 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_1083 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CLD_1084 putative 2-oxoacid:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CLD_1085 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CLD_1082 putative 2-oxoacid:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CLD_0325 putative aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CLD_0892 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CLD_0888 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CLD_0890 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CLD_0891 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CLD_0967 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D CLD_3397 folD; methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CLD_3398 putative methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D CLD_2935 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D CLD_2358 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLD_3226 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLD_3225 nitrate reductase, iron-sulfur subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D CLD_2180 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLD_2181 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:cbb00680]
D CLD_2358 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLD_3226 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLD_3225 nitrate reductase, iron-sulfur subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
D CLD_1970 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLD_0545 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLD_0586 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CLD_1949 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CLD_0233 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11]
D CLD_1135 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLD_2887 formylmethanofuran dehydrogenase E subunit-related protein K11261 fwdE; formylmethanofuran dehydrogenase subunit E [EC:1.2.7.12]
D CLD_2181 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CLD_2180 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLD_0546 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CLD_3436 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLD_3057 mtbC; dimethylamine corrinoid protein K16179 mtbC; dimethylamine corrinoid protein
D CLD_0930 putative 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71]
D CLD_3590 dhaKL; dihydroxyacetone kinase, DhaK/DhaL subunit
C 00910 Nitrogen metabolism [PATH:cbb00910]
D CLD_0076 nifH; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D CLD_1781 hcp; hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D CLD_0880 oxidoreductase, 2-nitropropane dioxygenase family K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D CLD_2829 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D CLD_0920 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLD_2910 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CLD_1219 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CLD_1971 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D CLD_3069 hypothetical protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:cbb00920]
D CLD_2224 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D CLD_3603 asrA; sulfite reductase, subunit A K16950 asrA; anaerobic sulfite reductase subunit A
D CLD_3602 asrB; sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B
D CLD_3601 arsC; anaerobic sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C
D CLD_3768 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLD_0569 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CLD_0028 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLD_3390 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLD_0570 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLD_2763 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:cbb00061]
D CLD_0892 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CLD_0888 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CLD_0890 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CLD_0891 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CLD_0883 acyl carrier protein K02078 acpP; acyl carrier protein
D CLD_2185 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CLD_0885 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLD_0882 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLD_0035 3-oxoacyl-[acyl-carrier-protein] synthase III, homolog K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLD_0887 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLD_0886 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLD_0246 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLD_0889 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CLD_0884 oxidoreductase, 2-nitropropane dioxygenase family K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:cbb00071]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_1332 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D CLD_0407 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:cbb00121]
D CLD_2374 linear amide C-N hydrolase, choloylglycine hydrolase family K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:cbb00561]
D CLD_2341 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_3589 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CLD_2625 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6]
D CLD_1789 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D CLD_2184 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CLD_0567 plsD; glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLD_0327 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLD_1598 diacylglycerol kinase/PAP2 family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CLD_3708 lipA; triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D CLD_2567 triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D CLD_0659 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D CLD_1681 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D CLD_0162 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D CLD_3590 dhaKL; dihydroxyacetone kinase, DhaK/DhaL subunit
C 00564 Glycerophospholipid metabolism [PATH:cbb00564]
D CLD_2117 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CLD_2331 oxidoreductase, FAD/[2Fe-2S]-binding K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D CLD_3491 FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
D CLD_0567 plsD; glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLD_0327 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLD_1598 diacylglycerol kinase/PAP2 family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CLD_1931 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D CLD_1616 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CLD_3377 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CLD_1320 glycerophosphoryl diester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CLD_2210 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CLD_0577 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CLD_0799 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CLD_0794 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CLD_3545 CDP-alcohol phosphatidyltransferase family protein K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CLD_2235 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CLD_1891 cls; cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
D CLD_1931 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
C 00600 Sphingolipid metabolism [PATH:cbb00600]
D CLD_3368 O-glycosyl hydrolase, family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D CLD_1643 lipase/acylhydrolase, GDSL family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:cbb00230]
D CLD_2771 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CLD_0270 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CLD_1425 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0855 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0939 prsA; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CLD_1664 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLD_1630 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLD_1668 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CLD_1666 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CLD_1985 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]
D CLD_1665 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CLD_1662 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CLD_1663 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CLD_2245 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CLD_1667 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLD_2619 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CLD_1480 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CLD_0542 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLD_2776 punA; purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CLD_1350 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CLD_2107 conserved hypothetical protein TIGR00726 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CLD_0965 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D CLD_1459 hpt; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
D CLD_1227 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CLD_1261 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CLD_0436 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CLD_3424 xpt; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CLD_3283 putative xanthine dehydrogenase, molybdopterin-binding subunit K00087 ygeS; xanthine dehydrogenase molybdenum-binding subunit [EC:1.17.1.4]
D CLD_3282 putative xanthine dehydrogenase, FAD-binding subunit K13479 ygeT; xanthine dehydrogenase FAD-binding subunit [EC:1.17.1.4]
D CLD_3281 putative xanthine dehydrogenase, iron-sulfur binding subunit K13480 ygeU; xanthine dehydrogenase iron-sulfur-binding subunit
D CLD_1228 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CLD_3280 guaD; guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3]
D CLD_A0034 putative guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CLD_2123 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CLD_1760 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLD_1761 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CLD_0693 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CLD_1606 deoxynucleotide triphosphohydrolase family protein K01129 dgt; dGTPase [EC:3.1.5.1]
D CLD_1481 putative GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CLD_0596 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5]
D CLD_0588 putative adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1]
D CLD_0858 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CLD_3575 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D CLD_0456 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2]
D CLD_1045 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CLD_1648 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D CLD_1971 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
C 00240 Pyrimidine metabolism [PATH:cbb00240]
D CLD_1868 ATP-grasp domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLD_1290 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CLD_1291 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D CLD_1292 pyrC; dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CLD_1295 pyrD; dihydroorotate oxidase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14]
D CLD_1294 pyrK; dihydroorotate dehydrogenase, electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit
D CLD_1296 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CLD_1293 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CLD_2207 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CLD_1540 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CLD_0654 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CLD_2832 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D CLD_2011 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D CLD_0583 putative threonyl-tRNA synthetase/uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48]
D CLD_0542 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLD_1350 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2]
D CLD_0641 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLD_3073 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLD_1754 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLD_3401 kinase, PfkB family K16328 psuK; pseudouridine kinase [EC:2.7.1.83]
D CLD_3400 indigoidine synthase A family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70]
D CLD_2777 pdp; pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
D CLD_1599 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D CLD_0510 cytidine/deoxycytidylate deaminase family protein K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D CLD_1147 cytidine/deoxycytidylate deaminase family protein K01489 cdd; cytidine deaminase [EC:3.5.4.5]
D CLD_2565 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D CLD_0693 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CLD_1760 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLD_1761 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CLD_0639 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D CLD_0731 putative thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CLD_3332 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CLD_0650 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D CLD_3796 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CLD_1002 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CLD_1755 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D CLD_1756 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D CLD_1656 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D CLD_0128 atcC; N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:cbb00250]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3102 putative L-aspartate oxidase NadB K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CLD_2120 ansA; L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CLD_3049 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D CLD_2819 hydrolase, carbon-nitrogen family K13566 NIT2; omega-amidase [EC:3.5.1.3]
D CLD_3403 aminotransferase, classes I and II K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12]
D CLD_1894 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CLD_1895 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CLD_0858 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CLD_2245 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CLD_1290 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CLD_1291 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit
D CLD_2710 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLD_2910 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CLD_1219 gltA; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CLD_2829 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D CLD_0920 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLD_1868 ATP-grasp domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLD_1766 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D CLD_1096 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLD_1664 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLD_1630 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:cbb00260]
D CLD_1184 lysC; aspartate kinase 2 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_2915 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_2231 dapG; aspartate kinase 1 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_1384 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLD_2914 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLD_2762 homoserine dehydrogenase family protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLD_2916 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CLD_2917 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CLD_2342 putative threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48]
D CLD_1970 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLD_2341 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CLD_0546 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CLD_3436 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLD_3371 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLD_0068 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLD_0067 gcvPB; glycine cleavage system P protein, subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLD_0070 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0069 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CLD_0577 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CLD_3354 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CLD_3353 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CLD_0999 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
C 00270 Cysteine and methionine metabolism [PATH:cbb00270]
D CLD_0569 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CLD_0028 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLD_3390 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLD_0570 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CLD_0026 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLD_3138 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLD_2661 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLD_2933 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CLD_0612 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CLD_1157 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D CLD_3079 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D CLD_3300 mtnK; 5-methylthioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100]
D CLD_2107 conserved hypothetical protein TIGR00726 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CLD_2271 amidohydrolase family protein K12960 mtaD; 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28]
D CLD_3299 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23]
D CLD_0789 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D CLD_1634 conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14]
D CLD_2435 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0187 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0053 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_2548 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_0027 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CLD_3204 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CLD_1184 lysC; aspartate kinase 2 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_2915 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_2231 dapG; aspartate kinase 1 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_1384 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLD_2914 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLD_2762 homoserine dehydrogenase family protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLD_2763 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D CLD_2761 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D CLD_1818 aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3768 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLD_3035 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLD_3403 aminotransferase, classes I and II K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12]
D CLD_3354 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CLD_3353 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CLD_3436 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
C 00280 Valine, leucine and isoleucine degradation [PATH:cbb00280]
D CLD_1818 aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_1332 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cbb00290]
D CLD_0999 ilvA; threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CLD_0459 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CLD_1818 aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00300 Lysine biosynthesis [PATH:cbb00300]
D CLD_2914 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLD_2762 homoserine dehydrogenase family protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CLD_1184 lysC; aspartate kinase 2 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_2915 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_2231 dapG; aspartate kinase 1 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_1384 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLD_1383 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CLD_3769 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CLD_1382 dapB_2; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CLD_1380 putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CLD_1177 putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CLD_2715 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CLD_1185 lysA; diaminopimelate decarboxilase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CLD_2838 aminotransferase, classes I and II K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-]
D CLD_3093 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CLD_3092 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:cbb00310]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_1723 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLD_1722 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00220 Arginine biosynthesis [PATH:cbb00220]
D CLD_1972 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CLD_1894 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CLD_1895 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CLD_2965 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D CLD_0720 arcA; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6]
D CLD_1766 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D CLD_0920 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLD_1868 ATP-grasp domain protein K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CLD_1971 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2]
D CLD_2829 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
C 00330 Arginine and proline metabolism [PATH:cbb00330]
D CLD_2565 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21]
D CLD_1423 Orn/Lys/Arg decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D CLD_3669 peptidyl-arginine deiminase, Porphyromonas-type K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D CLD_1157 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_2691 bltD; spermine/spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D CLD_3395 acetyltransferase, GNAT family K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57]
D CLD_3371 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLD_1349 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CLD_2595 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D CLD_1348 formate acetyltransferase K23121 pflD; trans-4-hydroxy-L-proline dehydratase [EC:4.2.1.172]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2164 prdF; proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D CLD_2175 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D CLD_2158 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D CLD_2177 prdB; D-proline reductase, PrdB subunit, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
D CLD_2160 putative D-proline reductase, PrdB subunit, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
C 00340 Histidine metabolism [PATH:cbb00340]
D CLD_2986 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CLD_2987 hisZ; ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit
D CLD_2978 hisE; phosphoribosyl-ATP pyrophosphohydrolase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D CLD_2979 hisI; phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19]
D CLD_2982 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D CLD_2983 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CLD_2980 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CLD_2984 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D CLD_2981 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLD_1994 hisJ; histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D CLD_2985 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_3371 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
C 00350 Tyrosine metabolism [PATH:cbb00350]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2981 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLD_3371 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLD_0407 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLD_1239 D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110]
C 00360 Phenylalanine metabolism [PATH:cbb00360]
D CLD_3371 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLD_1330 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2981 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLD_1371 acetyltransferase, GNAT family K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-]
D CLD_1239 D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110]
D CLD_2412 enr; 2-enoate reductase K10797 enr; 2-enoate reductase [EC:1.3.1.31]
C 00380 Tryptophan metabolism [PATH:cbb00380]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_3371 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_1239 D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110]
D CLD_1707 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cbb00400]
D CLD_3078 aroF; phospho-2-dehydro-3-deoxyheptonate aldolase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CLD_2491 putative 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CLD_3080 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CLD_2739 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CLD_2738 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CLD_3077 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CLD_1530 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CLD_2831 aroH; chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5]
D CLD_1535 putative ACT domain protein K06209 pheB; chorismate mutase [EC:5.4.99.5]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2981 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:cbb00410]
D CLD_0320 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CLD_2710 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_0319 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CLD_1755 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D CLD_1756 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D CLD_1656 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D CLD_0128 atcC; N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D CLD_1332 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1]
C 00430 Taurine and hypotaurine metabolism [PATH:cbb00430]
D CLD_2710 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLD_2829 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2]
D CLD_2180 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CLD_2181 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism [PATH:cbb00440]
D CLD_0101 PHP domain protein K20859 phnPP; phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase [EC:3.1.4.57]
C 00450 Selenocompound metabolism [PATH:cbb00450]
D CLD_0026 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLD_3138 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLD_2661 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLD_2933 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CLD_0789 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11]
D CLD_1072 oxidoreductase, pyridine nucleotide-disulphide family K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CLD_3313 putative thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CLD_3308 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CLD_1658 putative selenate reductase, YgfK subunit K12527 ygfK; putative selenate reductase [EC:1.97.1.9]
D CLD_1567 selD; selenide, water dikinase, selenocysteine-containing K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CLD_1568 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CLD_0711 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:cbb00460]
D CLD_2120 ansA; L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CLD_3049 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1]
D CLD_1970 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:cbb00470]
D CLD_0476 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_1110 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_2898 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_0290 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLD_1766 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D CLD_0921 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CLD_0974 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLD_2715 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CLD_1185 lysA; diaminopimelate decarboxilase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CLD_2651 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D CLD_2622 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D CLD_2164 prdF; proline racemase K01777 prdF; proline racemase [EC:5.1.1.4]
D CLD_2175 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D CLD_2158 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1]
D CLD_2177 prdB; D-proline reductase, PrdB subunit, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
D CLD_2160 putative D-proline reductase, PrdB subunit, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1]
C 00480 Glutathione metabolism [PATH:cbb00480]
D CLD_1675 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLD_2343 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLD_3151 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
D CLD_3368 O-glycosyl hydrolase, family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45]
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:cbb00542]
D CLD_0638 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cbb00541]
D CLD_1427 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CLD_1795 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_1886 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_2540 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CLD_1880 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CLD_1861 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLD_2572 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLD_2571 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLD_1863 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLD_1864 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CLD_1862 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D CLD_0338 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CLD_0684 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CLD_1860 spore coat polysaccharide biosynthesis protein SpsC K13010 per; perosamine synthetase [EC:2.6.1.102]
D CLD_0938 glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CLD_0637 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CLD_1432 UDP-glucose/GDP-mannose dehydrogenase family K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136]
D CLD_1433 oxidoreductase, NAD-binding Rossmann fold family K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335]
D CLD_3738 putative pleiotropic regulatory protein DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CLD_1440 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23]
C 00550 Peptidoglycan biosynthesis [PATH:cbb00550]
D CLD_0918 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLD_0626 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLD_1130 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLD_0935 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CLD_0974 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLD_3093 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CLD_0290 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLD_3092 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CLD_2209 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLD_3230 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLD_0433 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_0336 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_1100 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_0401 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_1099 undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_3091 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLD_3682 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLD_1813 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CLD_1457 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLD_1545 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CLD_3094 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D CLD_1125 penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D CLD_2781 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_2787 putative serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_1565 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_3133 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_3528 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0147 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0339 UDP-N-acetylmuramyl tripeptide synthetase homolog K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D CLD_0340 glutamine amidotransferase, CobB/CobQ family K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:cbb00552]
D CLD_0433 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_0336 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_1100 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_0401 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_1099 undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_0638 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLD_1448 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D CLD_1562 putative cell envelope-related function transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D CLD_1875 cell envelope-related transcriptional attenuator domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-]
D CLD_0659 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D CLD_1681 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
D CLD_0162 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:cbb00543]
D CLD_0638 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLD_1494 membrane-bound O-acyltransferase family protein K19294 algI; alginate O-acetyltransferase complex protein AlgI
D CLD_0569 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:cbb00730]
D CLD_1631 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D CLD_0291 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CLD_3793 thiD; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CLD_1997 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_3387 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_0903 putative thiazole biosynthesis protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D CLD_2756 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CLD_2322 putative hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CLD_0292 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CLD_0293 thiE; thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CLD_1648 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15]
D CLD_2134 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CLD_2136 thiamine pyrophosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2]
D CLD_1045 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CLD_3794 thiamine pyridinylase I K10811 E2.5.1.2; thiamine pyridinylase [EC:2.5.1.2]
C 00740 Riboflavin metabolism [PATH:cbb00740]
D CLD_1678 ribAB; bifunctional riboflavin biosynthesis protein RibAB K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CLD_1676 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CLD_1623 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D CLD_3201 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12]
D CLD_1679 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CLD_1677 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CLD_2226 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CLD_2322 putative hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CLD_0292 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CLD_2771 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
D CLD_0270 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-]
C 00750 Vitamin B6 metabolism [PATH:cbb00750]
D CLD_3149 pyridoxine kinase family protein K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D CLD_2917 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CLD_1774 pyridoxal biosynthesis lyase PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:cbb00760]
D CLD_3102 putative L-aspartate oxidase NadB K00278 nadB; L-aspartate oxidase [EC:1.4.3.16]
D CLD_3101 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D CLD_3103 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D CLD_3127 putative nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D CLD_2776 punA; purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1]
D CLD_0542 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CLD_1560 nadD; nicotinate nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CLD_0780 hydrolase, NUDIX family K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D CLD_0212 nadE; glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1]
D CLD_3429 pncA family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D CLD_0739 NAD-dependent deacetylase, Sir2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D CLD_2758 ppnK; ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:cbb00770]
D CLD_0459 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CLD_0318 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CLD_3399 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D CLD_0319 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CLD_0968 coaX; pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D CLD_2125 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CLD_2144 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CLD_1532 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CLD_1107 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CLD_1973 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D CLD_1818 aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLD_1755 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1]
D CLD_1756 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1]
D CLD_1656 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D CLD_0128 atcC; N-carbamyl-L-cysteine amidohydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87]
D CLD_0320 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00780 Biotin metabolism [PATH:cbb00780]
D CLD_0887 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLD_0886 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLD_0246 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLD_0889 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CLD_2317 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D CLD_0904 radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6]
D CLD_2316 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CLD_3444 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:cbb00785]
D CLD_0065 putative lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D CLD_2920 putative lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_2922 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CLD_0068 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2]
D CLD_0067 gcvPB; glycine cleavage system P protein, subunit 2 K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2]
D CLD_0070 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLD_0069 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:cbb00790]
D CLD_2996 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CLD_3742 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D CLD_3744 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CLD_1373 folC; FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CLD_1678 ribAB; bifunctional riboflavin biosynthesis protein RibAB K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CLD_2998 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLD_3745 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLD_2997 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CLD_2995 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CLD_3496 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D CLD_0227 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D CLD_2283 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105]
D CLD_2684 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CLD_2685 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CLD_2681 mog; molybdopterin biosynthesis enzyme Mog K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CLD_2683 putative molybdopterin biosynthesis enzyme MoeA / molybdate binding domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CLD_2682 moeA; molybdopterin biosynthesis enzyme MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CLD_1651 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
D CLD_1721 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76]
C 00670 One carbon pool by folate [PATH:cbb00670]
D CLD_0967 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D CLD_3397 folD; methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CLD_3398 putative methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9]
D CLD_1970 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CLD_1666 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CLD_1667 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLD_1851 bifunctional polymyxin resistance protein ArnA K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CLD_2128 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CLD_0070 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CLD_2933 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
D CLD_3796 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CLD_1002 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CLD_2935 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D CLD_1958 5-formyltetrahydrofolate cyclo-ligase family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:cbb00860]
D CLD_3636 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CLD_3639 hemC; porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CLD_2332 uroporphyrinogen decarboxylase family protein K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CLD_3543 conserved hypothetical protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3]
D CLD_3638 cobA_hemD; uroporphyrinogen III synthase/methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D CLD_3640 precorrin-2 dehydrogenase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76]
D CLD_3608 cbiK; anaerobic sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3]
D CLD_3614 cobI; precorrin-2 C20-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151]
D CLD_3611 cobJ; precorrin-3B C17-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272]
D CLD_3613 cobM; precorrin-4 C11-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271]
D CLD_3612 cbiG; cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12]
D CLD_3610 cobK; precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106]
D CLD_3625 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195]
D CLD_3622 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196]
D CLD_3624 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289]
D CLD_3634 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60]
D CLD_3635 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11]
D CLD_3606 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17]
D CLD_3646 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10]
D CLD_3645 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
D CLD_3649 cobU; cobinamide kinase / cobinamide phosphate guanyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62]
D CLD_3751 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26]
D CLD_3753 cobC; alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73]
D CLD_3607 putative kinase K16651 pduX; L-threonine kinase [EC:2.7.1.177]
D CLD_3644 aminotransferase family protein K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cbb00130]
D CLD_3719 flavodoxin-like fold domain protein K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:cbb00900]
D CLD_2756 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CLD_2214 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CLD_0997 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D CLD_0665 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CLD_0719 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D CLD_2216 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CLD_2833 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_2754 putative geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CLD_2209 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLD_3230 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CLD_1114 transketolase, pyridine binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CLD_1113 transketolase, thiamine diphosphate binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:cbb00523]
D CLD_1861 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLD_2572 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLD_2571 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLD_1863 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLD_1864 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CLD_1862 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D CLD_2571 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLD_1863 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis
C 00261 Monobactam biosynthesis [PATH:cbb00261]
D CLD_1184 lysC; aspartate kinase 2 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_2915 aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_2231 dapG; aspartate kinase 1 K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CLD_1384 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CLD_1383 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CLD_3769 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CLD_1382 dapB_2; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:cbb00521]
D CLD_2951 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CLD_1425 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_0855 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CLD_1861 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLD_2572 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLD_2571 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLD_1863 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLD_1864 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CLD_1862 rfbD; dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D CLD_2951 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:cbb00525]
D CLD_3207 3-dehydroquinate synthase family protein K19969 acbC; 2-epi-5-epi-valiolone synthase [EC:4.2.3.152]
D CLD_1861 rfbA; glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLD_2572 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CLD_2571 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CLD_1863 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:cbb00401]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2981 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CLD_2399 phenazine biosynthesis protein, PhzF family K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
C 00333 Prodigiosin biosynthesis
D CLD_0885 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLD_0886 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLD_0246 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CLD_0883 acyl carrier protein K02078 acpP; acyl carrier protein
D CLD_2185 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D CLD_0612 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
D CLD_2651 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
D CLD_2622 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12]
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:cbb00362]
D CLD_1330 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
C 00627 Aminobenzoate degradation
D CLD_1723 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLD_1722 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:cbb00625]
D CLD_0407 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
D CLD_3461 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
D CLD_0076 nifH; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH
D CLD_3542 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00361 Chlorocyclohexane and chlorobenzene degradation
D CLD_3542 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2]
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation [PATH:cbb00633]
D CLD_2800 hupL; [Ni/Fe] hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D CLD_2799 hupS; [Ni/Fe] hydrogenase, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D CLD_2358 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLD_3226 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4]
D CLD_3225 nitrate reductase, iron-sulfur subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:cbb00626]
D CLD_0407 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:cbb03020]
D CLD_1016 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLD_1017 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLD_A0078 dna-directed rna polymerase alpha chain (rnap alphasubunit) (transcriptase alpha chain) (rna polymerase subunit alpha) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLD_1053 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLD_2124 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D CLD_0237 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:cbb03010]
D CLD_3410 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CLD_2833 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1
D CLD_2205 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CLD_1030 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CLD_1102 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLD_1052 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLD_1041 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CLD_0846 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CLD_1020 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CLD_1038 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CLD_1060 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CLD_1023 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CLD_1051 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CLD_1019 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CLD_1050 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CLD_1037 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CLD_2227 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CLD_2192 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CLD_1033 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CLD_0848 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CLD_1028 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CLD_1578 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CLD_1592 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CLD_1013 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CLD_1027 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CLD_1024 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CLD_1025 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CLD_1036 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CLD_1039 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CLD_1015 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CLD_0852 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CLD_1014 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CLD_1012 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CLD_1059 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CLD_1034 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CLD_1043 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CLD_1031 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CLD_1054 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CLD_1040 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CLD_2196 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CLD_1406 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CLD_1555 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CLD_1029 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CLD_1026 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CLD_1035 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CLD_1314 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D CLD_1424 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CLD_1557 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CLD_2139 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CLD_1032 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CLD_1042 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CLD_0651 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CLD_2183 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CLD_1009 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CLD_0826 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CLD_1405 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CLD_1049 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CLD_1018 ribosomal protein L7Ae family protein K07590 RP-L7A; large subunit ribosomal protein L7A
D CLD_3805 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3813 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3815 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3811 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3822 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3817 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3809 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3807 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3820 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3806 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3812 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3821 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3816 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3819 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3810 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3808 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3818 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3814 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_0740 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0331 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0984 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0770 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0977 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0764 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0757 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0816 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0747 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:cbb00970]
D CLD_0335 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLD_0980 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLD_0813 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLD_0800 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_1265 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_1282 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_1273 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_0791 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_1286 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_0329 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLD_0986 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLD_0985 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLD_0866 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLD_0870 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLD_1395 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLD_0874 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLD_0738 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLD_1398 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLD_0592 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLD_1267 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLD_1276 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLD_0864 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLD_0871 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLD_0868 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLD_0266 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLD_1271 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1280 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1397 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1264 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1281 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1285 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1272 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1006 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1266 tRNA-His K14226 tRNA-His; tRNA His
D CLD_1275 tRNA-His K14226 tRNA-His; tRNA His
D CLD_0334 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLD_0981 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLD_0955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_0958 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1269 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1278 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1495 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1534 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1274 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_1283 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_0763 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_1268 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_0769 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_1277 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_0814 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0979 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0957 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0962 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0956 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0959 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0960 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0961 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0745 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLD_0755 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLD_1396 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLD_0934 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLD_1263 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLD_1284 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLD_0801 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_0803 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_0802 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_0804 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_0787 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_1007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_0875 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_0619 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_0615 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_0867 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_1206 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CLD_0614 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLD_0618 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLD_0616 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_0872 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_0869 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_0865 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_1394 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_1570 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D CLD_3466 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLD_1256 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CLD_1257 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CLD_1255 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CLD_2001 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLD_1486 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLD_3547 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D CLD_0159 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLD_0973 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CLD_1403 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLD_0238 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLD_0805 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLD_1568 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CLD_1000 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLD_0711 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLD_1851 bifunctional polymyxin resistance protein ArnA K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CLD_2128 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CLD_1372 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLD_0594 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLD_0687 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLD_0972 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLD_3487 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLD_1176 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLD_0998 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLD_1485 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLD_1410 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLD_1411 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLD_1198 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLD_3364 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLD_1190 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:cbb03060]
D CLD_1044 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CLD_1010 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CLD_0544 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CLD_1477 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CLD_1478 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CLD_1473 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CLD_0829 putative sporulation protein/membrane protein insertase, OxaA family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLD_0607 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLD_2191 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLD_3824 srpB; bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D CLD_2189 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLD_2197 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLD_0178 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLD_3577 putative signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CLD_3075 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:cbb04122]
D CLD_1997 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_3387 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_3768 rhodanese domain protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CLD_3384 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLD_1636 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLD_2684 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CLD_2689 moaD; molybdopterin converting factor subunit 1 K03636 moaD; sulfur-carrier protein
D CLD_3422 putative thiosulfate sulfurtransferase K21028 ynjE; molybdopterin synthase sulfurtransferase [EC:2.8.1.11]
D CLD_2685 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CLD_2681 mog; molybdopterin biosynthesis enzyme Mog K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
C 03050 Proteasome
C 03018 RNA degradation [PATH:cbb03018]
D CLD_0545 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLD_2228 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CLD_0118 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CLD_0543 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLD_1772 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2858 dbpA; ATP-dependent RNA helicase DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2860 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2614 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_3571 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CLD_0652 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D CLD_2237 HDIG/HD/KH domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CLD_2006 RNA-metabolizing metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CLD_3274 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CLD_1135 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLD_1586 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLD_1225 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLD_2843 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:cbb03030]
D CLD_0507 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLD_1134 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLD_2217 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLD_A0014 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_0786 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_0729 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLD_1577 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_A0017 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_0824 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_A0160 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_0854 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CLD_1607 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CLD_A0039 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CLD_A0006 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0847 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_A0158 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0356 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLD_0347 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CLD_2199 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CLD_1531 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLD_1252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:cbb03410]
D CLD_1220 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D CLD_0566 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CLD_3302 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D CLD_0120 methylated-dna--protein-cysteine methyltransferase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D CLD_0096 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CLD_0768 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLD_0713 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLD_3071 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CLD_1809 AP endonuclease, family 2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CLD_1531 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLD_1810 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLD_1252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:cbb03420]
D CLD_0944 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CLD_1122 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D CLD_1121 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D CLD_1128 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D CLD_1327 GIY-YIG domain protein K03703 uvrC; excinuclease ABC subunit C
D CLD_3238 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1251 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_A0129 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1179 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_3123 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1639 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1531 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLD_1252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLD_0237 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
C 03430 Mismatch repair [PATH:cbb03430]
D CLD_2840 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D CLD_1418 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLD_0127 MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLD_2841 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D CLD_3238 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1251 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_A0129 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1179 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_3123 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1639 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_2752 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CLD_2753 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CLD_1810 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLD_A0006 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0847 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_A0158 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0356 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLD_1134 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLD_2217 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLD_0824 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_A0160 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_A0014 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_0786 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_1577 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_A0017 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_0729 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLD_0507 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLD_1252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:cbb03440]
D CLD_1810 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLD_A0006 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0847 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_A0158 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0356 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLD_0822 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D CLD_0784 recR; recombination protein RecR K06187 recR; recombination protein RecR
D CLD_2236 recA; recA protein K03553 recA; recombination protein RecA
D CLD_1531 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLD_1469 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CLD_1470 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CLD_2142 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CLD_0611 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D CLD_1134 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLD_2217 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLD_0824 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_A0160 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_A0014 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_0786 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_1577 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_A0017 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_0729 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLD_0507 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLD_2126 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:cbb02010]
D CLD_2678 tupA; tungstate ABC transporter, tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D CLD_2679 putative tungstate ABC transporter, permease protein TupB K05773 tupB; tungstate transport system permease protein
D CLD_2680 putative tungstate ABC transporter, ATP-binding protein TupC K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CLD_3068 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CLD_3067 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CLD_3066 putative molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CLD_3415 ABC transporter, substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CLD_3414 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D CLD_3413 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CLD_0187 potCD; spermidine/putrescine transport system permease protein PotC/spermidine/putrescine-binding periplasmic protein PotD K11069 potD; spermidine/putrescine transport system substrate-binding protein
D CLD_0188 potB; spermidine/putrescine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D CLD_0189 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D CLD_2918 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D CLD_2919 glycine betaine/L-proline ABC transporter, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CLD_3039 carbohydrate uptake ABC transporter, CUT1 family, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CLD_0556 lipoprotein, bmp family K07335 bmpA; basic membrane protein A and related proteins
D CLD_0554 sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D CLD_0553 sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D CLD_0555 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D CLD_0365 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLD_2110 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLD_0364 phosphate uptake ABC transporter, PhoT family, permease protein K02037 pstC; phosphate transport system permease protein
D CLD_2111 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D CLD_0363 phosphate uptake ABC transporter, PhoT family, permease protein K02038 pstA; phosphate transport system permease protein
D CLD_2112 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CLD_2113 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CLD_0362 phosphate uptake ABC transporter, PhoT family, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CLD_3388 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D CLD_3137 amino acid ABC transporter, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D CLD_3389 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein
D CLD_3136 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein
D CLD_3135 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D CLD_2607 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CLD_2608 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein
D CLD_2609 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CLD_0289 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CLD_0288 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CLD_0287 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CLD_0286 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CLD_0285 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CLD_3474 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLD_3473 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLD_3052 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLD_3475 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein
D CLD_3053 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein
D CLD_3476 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CLD_3054 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CLD_1386 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CLD_1258 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D CLD_1387 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D CLD_1388 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D CLD_1389 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CLD_1390 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CLD_3174 periplasmic solute binding protein family K09815 znuA; zinc transport system substrate-binding protein
D CLD_3176 putative metal ion ABC transporter, permease protein K09816 znuB; zinc transport system permease protein
D CLD_3175 putative metal ion ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CLD_3642 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D CLD_3643 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CLD_3641 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CLD_3653 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D CLD_2315 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D CLD_2654 putative ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein
D CLD_1057 cobalt transport permease, CbiQ family K16785 ecfT; energy-coupling factor transport system permease protein
D CLD_1055 putative cobalt ABC transporter, ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLD_1056 putative cobalt ABC transporter, ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLD_2338 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein
D CLD_2337 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLD_2290 putative membrane protein K19310 bcrB; bacitracin transport system permease protein
D CLD_2289 antibiotic ABC transporter, ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein
D CLD_3146 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein
D CLD_3147 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein
D CLD_2969 putative lantibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein
D CLD_2968 putative lantibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein
D CLD_2970 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D CLD_1118 efflux ABC transporter, permease protein, FtsX family K09811 ftsX; cell division transport system permease protein
D CLD_1117 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CLD_1785 ABC transporter, permease protein K16919 ytrC_D; acetoin utilization transport system permease protein
D CLD_1784 ABC transporter, ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D CLD_2954 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLD_3507 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLD_2953 ABC transporter ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLD_3506 ABC transport ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLD_2670 ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLD_2693 putative ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLD_2671 putative ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLD_2694 ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLD_0197 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein
D CLD_1709 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS) [PATH:cbb02060]
D CLD_1067 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CLD_2243 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D CLD_1820 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLD_3231 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLD_0481 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0460 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0472 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_1733 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CLD_0462 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_0484 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_2949 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D CLD_3191 phosphotransferase system domain protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D CLD_3685 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLD_1717 PTS system, beta-glucoside-specific family, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLD_0102 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLD_0475 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CLD_2638 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CLD_1164 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CLD_1163 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CLD_1161 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component
D CLD_1092 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CLD_1091 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CLD_1090 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D CLD_2483 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CLD_2484 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CLD_2485 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D CLD_2876 pfkB; 1-phosphofructokinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:cbb03070]
D CLD_1477 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CLD_1478 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CLD_1010 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CLD_0544 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CLD_1044 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CLD_1473 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CLD_0829 putative sporulation protein/membrane protein insertase, OxaA family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLD_0607 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLD_2189 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLD_2191 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLD_2087 TraG/TraD family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:cbb02020]
D CLD_2109 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CLD_2108 putative phosphate regulon DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CLD_0399 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CLD_0365 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLD_2110 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLD_0454 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D CLD_0455 DNA-binding response regulator K07770 cssR; two-component system, OmpR family, response regulator CssR
D CLD_0942 putative protease K04771 degP; serine protease Do [EC:3.4.21.107]
D CLD_1843 flagellin K02406 fliC; flagellin
D CLD_1897 flagellin K02406 fliC; flagellin
D CLD_1870 fliC; flagellin K02406 fliC; flagellin
D CLD_0531 flagellin protein K02406 fliC; flagellin
D CLD_1922 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D CLD_2348 putative chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1911 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_3595 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D CLD_0825 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CLD_3147 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein
D CLD_3146 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein
D CLD_3143 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLD_0434 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLD_3144 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ
D CLD_0435 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ
D CLD_0432 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein
D CLD_3142 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein
D CLD_0431 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein
D CLD_3141 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein
D CLD_2657 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_0505 sensor protein VanS (Vancomycin resistance protein vanS)(Vancomycin histidine protein kinase) K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_2656 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CLD_0506 regulatory protein VanR K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0488 regulatory protein VanR K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0386 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_3528 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0147 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_2251 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D CLD_2250 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR
D CLD_2701 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLD_2966 putative lantibiotic biosynthesis sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLD_2967 putative lantibiotic biosynthesis regulatory protein K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLD_2700 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLD_2970 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D CLD_2969 putative lantibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein
D CLD_2968 putative lantibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein
D CLD_2765 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D CLD_0565 malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CLD_0518 malic enzyme K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38]
D CLD_2337 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLD_2338 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein
D CLD_0421 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLD_0414 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLD_0420 putative lipoprotein K07800 agrD; AgrD protein
D CLD_0413 hypothetical protein K07800 agrD; AgrD protein
D CLD_3380 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D CLD_3382 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA
D CLD_1837 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CLD_0920 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLD_1723 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9]
D CLD_1722 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_0551 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CLD_2730 putative pilin K02650 pilA; type IV pilus assembly protein PilA
D CLD_2799 hupS; [Ni/Fe] hydrogenase, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6]
D CLD_2800 hupL; [Ni/Fe] hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6]
D CLD_1825 cheR; chemotaxis protein methyltransferase, CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CLD_0305 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1763 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_3183 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2993 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_3028 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0350 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0198 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0073 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0034 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2866 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2708 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1769 putative methyl-accepting chemotaxis protein TlpC K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1746 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1319 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2893 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2624 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1829 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLD_1822 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLD_1826 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLD_1828 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLD_3568 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLD_1824 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CLD_2861 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CLD_3218 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLD_3605 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLD_0142 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
D CLD_0143 response regulator K07719 glnL; two-component system, response regulator GlnL
D CLD_1766 glsA; glutaminase K01425 glsA; glutaminase [EC:3.5.1.2]
D CLD_0637 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CLD_1832 negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:cbb02024]
D CLD_0027 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CLD_3204 luxS; S-ribosylhomocysteinase LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CLD_2843 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CLD_2399 phenazine biosynthesis protein, PhzF family K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
D CLD_2710 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15]
D CLD_2166 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CLD_0409 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CLD_3454 putative ABC transporter, solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D CLD_3452 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CLD_3453 ABC transporter, permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CLD_3451 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CLD_0289 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CLD_0288 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CLD_0287 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CLD_0286 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CLD_0285 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CLD_3218 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLD_3605 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLD_1676 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CLD_1692 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_1143 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_0897 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_3008 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_3705 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_3700 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_0420 putative lipoprotein K07800 agrD; AgrD protein
D CLD_0413 hypothetical protein K07800 agrD; AgrD protein
D CLD_0421 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLD_0414 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLD_3380 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D CLD_3382 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA
D CLD_1386 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CLD_1258 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D CLD_1387 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D CLD_1388 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D CLD_1389 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CLD_1390 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CLD_3340 putative oligopeptide ABC transporter, oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLD_2886 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLD_3757 methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLD_3182 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLD_3342 putative oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLD_2885 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLD_3181 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLD_3343 putative oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLD_2884 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLD_3180 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLD_2883 ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CLD_3179 peptide/opine/nickel uptake ABC transporter, PepT family, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CLD_0829 putative sporulation protein/membrane protein insertase, OxaA family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLD_1010 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CLD_0544 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CLD_1044 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CLD_1473 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CLD_0607 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLD_2189 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLD_2191 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLD_2765 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D CLD_1931 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D CLD_2701 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLD_2966 putative lantibiotic biosynthesis sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLD_2967 putative lantibiotic biosynthesis regulatory protein K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLD_2700 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLD_2970 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D CLD_2969 putative lantibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein
D CLD_2968 putative lantibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:cbb02030]
D CLD_0305 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1763 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_3183 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2993 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_3028 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0350 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0198 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0073 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0034 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2866 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2708 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1769 putative methyl-accepting chemotaxis protein TlpC K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1746 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1319 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2893 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2624 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1826 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLD_1829 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLD_1822 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLD_1828 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLD_3568 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLD_1827 cheC; chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC
D CLD_2851 cheX; chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D CLD_1824 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CLD_2861 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CLD_1823 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D CLD_1825 cheR; chemotaxis protein methyltransferase, CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CLD_1902 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CLD_1830 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CLD_1831 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CLD_2348 putative chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1911 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1912 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D CLD_2349 putative chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:cbb02040]
D CLD_1900 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CLD_1901 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CLD_1902 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CLD_1903 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CLD_1904 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CLD_1905 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D CLD_1906 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CLD_1913 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D CLD_1830 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CLD_1831 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CLD_1914 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CLD_1915 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CLD_1916 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CLD_1918 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CLD_1917 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB
D CLD_1898 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CLD_1899 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CLD_1907 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CLD_1909 flgE; flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE
D CLD_1925 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D CLD_1926 flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D CLD_1834 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CLD_1835 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D CLD_1843 flagellin K02406 fliC; flagellin
D CLD_1897 flagellin K02406 fliC; flagellin
D CLD_1870 fliC; flagellin K02406 fliC; flagellin
D CLD_0531 flagellin protein K02406 fliC; flagellin
D CLD_1841 flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D CLD_1840 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CLD_2348 putative chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1911 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1912 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D CLD_2349 putative chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D CLD_1832 negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CLD_1608 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D CLD_0551 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CLD_1922 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CLD_0545 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
D CLD_2933 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:cbb01501]
D CLD_1386 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CLD_1258 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D CLD_1387 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D CLD_1388 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D CLD_1389 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CLD_1390 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CLD_0086 peptidase, M56 family K02172 blaR1; bla regulator protein blaR1
D CLD_0087 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D CLD_1457 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLD_1545 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:cbb01502]
D CLD_2657 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_0505 sensor protein VanS (Vancomycin resistance protein vanS)(Vancomycin histidine protein kinase) K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_2656 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CLD_0506 regulatory protein VanR K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0488 regulatory protein VanR K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0386 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0290 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLD_0476 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_1110 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_2898 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_3092 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CLD_3091 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLD_3682 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLD_1813 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CLD_3528 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0147 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cbb01503]
D CLD_1062 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1429 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_3119 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1430 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_2080 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1529 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_2469 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_0942 putative protease K04771 degP; serine protease Do [EC:3.4.21.107]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:cbb01000]
C 01001 Protein kinases [BR:cbb01001]
D CLD_2133 protein kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D CLD_1878 capsular exopolysaccharide family protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D CLD_2109 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CLD_0454 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D CLD_3143 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLD_0434 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLD_2657 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_0505 sensor protein VanS (Vancomycin resistance protein vanS)(Vancomycin histidine protein kinase) K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_2251 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D CLD_2701 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLD_2966 putative lantibiotic biosynthesis sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLD_0516 putative sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D CLD_3380 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D CLD_1214 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D CLD_1826 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLD_0142 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:cbb01009]
D CLD_2667 leucine-rich repeat protein K17550 PPP1R7; protein phosphatase 1 regulatory subunit 7
D CLD_1135 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLD_2640 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
D CLD_2132 protein phosphatase family protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
C 01002 Peptidases and inhibitors [BR:cbb01002]
D CLD_3577 putative signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CLD_3075 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CLD_3243 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLD_1579 gpr; spore protease K06012 gpr; spore protease [EC:3.4.24.78]
D CLD_2801 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D CLD_2102 spoIIGA; sporulation factor SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-]
D CLD_2707 cloSI; clostripain K08587 cloSI; clostripain [EC:3.4.22.8]
D CLD_1228 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CLD_0723 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_1765 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_A0008 cell wall-associated hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_0244 putative peptidoglycan hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_2769 nlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_1664 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLD_1630 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CLD_1096 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CLD_1805 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CLD_3540 DJ-1/PfpI family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CLD_2374 linear amide C-N hydrolase, choloylglycine hydrolase family K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24]
D CLD_2505 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D CLD_0421 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLD_0414 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B
D CLD_3260 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLD_2365 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLD_3633 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLD_2994 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLD_1305 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLD_0153 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLD_0258 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLD_0208 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein
D CLD_3104 bacillolysin K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLD_3108 npr; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLD_3107 npr; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLD_3105 npr; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28]
D CLD_2936 colG; collagenase K01387 colA; microbial collagenase [EC:3.4.24.3]
D CLD_3164 zinc carboxypeptidase family protein K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11]
D CLD_3528 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0147 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_1212 peptidase family protein K06972 PITRM1; presequence protease [EC:3.4.24.-]
D CLD_3348 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D CLD_1177 putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CLD_0304 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D CLD_1675 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLD_2343 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLD_3151 pepD; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CLD_0909 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CLD_1046 map; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CLD_2311 metallopeptidase, family M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CLD_0207 pepP; Xaa-pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CLD_A0068 botA; bontoxilysin A K06011 boNT; botulinum neurotoxin [EC:3.4.24.69]
D CLD_1779 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-]
D CLD_1070 iadA; isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D CLD_1178 hflB; ATP-dependent metallopeptidase HflB K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLD_0966 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLD_0349 putative Cell division protease FtsH homolog K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLD_0562 glutamyl aminopeptidase family protein K01269 yhfE; aminopeptidase [EC:3.4.11.-]
D CLD_1551 putative metalloprotease K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-]
D CLD_2215 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CLD_0086 peptidase, M56 family K02172 blaR1; bla regulator protein blaR1
D CLD_0942 putative protease K04771 degP; serine protease Do [EC:3.4.21.107]
D CLD_0895 subtilase family protein K17734 aprX; serine protease AprX [EC:3.4.21.-]
D CLD_2781 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_2787 putative serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_1565 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_3133 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_1300 clpP; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CLD_1303 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CLD_0853 ATP-dependent protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CLD_1302 lonB; ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53]
D CLD_2845 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CLD_2197 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLD_0178 lepB; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CLD_2595 prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5]
D CLD_1119 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CLD_0667 cphB; cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6]
D CLD_0351 putative membrane associated peptidase K19225 gluP; rhomboid protease GluP [EC:3.4.21.105]
D CLD_2764 spoIVB; stage IV sporulation protein B K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116]
D CLD_0737 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D CLD_1417 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D CLD_2010 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:cbb01003]
D CLD_0659 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315]
D CLD_1457 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLD_1448 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187]
D CLD_0638 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CLD_1186 glycosyl transferase, group 36 family protein K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:cbb01005]
D CLD_0453 glycosyl transferase, group 2 family protein K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]
D CLD_0638 tagO; undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cbb01011]
D CLD_0918 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLD_0626 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CLD_1130 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CLD_0935 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CLD_0974 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CLD_3093 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CLD_0290 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CLD_0476 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_1110 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_2898 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CLD_0921 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CLD_0737 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
D CLD_3091 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLD_3682 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CLD_1813 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CLD_0433 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_0336 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_1100 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_0401 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_1099 undecaprenyl-diphosphatase K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CLD_1445 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D CLD_1457 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CLD_1545 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CLD_3094 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein)
D CLD_1125 penicillin-binding protein K05364 pbpA; penicillin-binding protein A
D CLD_2781 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_2787 putative serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_1565 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_3133 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CLD_3528 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0147 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0723 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_1765 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_A0008 cell wall-associated hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_0244 putative peptidoglycan hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_2769 nlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CLD_2505 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D CLD_1533 transglycosylase SLT domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CLD_2008 conserved hypothetical protein TIGR00247 K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CLD_0571 sleB; spore-cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CLD_3235 cell Wall hydrolase K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CLD_0625 spoIID; stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29]
D CLD_1062 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1429 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_3119 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1430 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_2080 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1529 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_2469 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:cbb01004]
D CLD_0885 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CLD_0882 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLD_0035 3-oxoacyl-[acyl-carrier-protein] synthase III, homolog K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CLD_0887 fabF; beta-ketoacyl-acyl-carrier-protein synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CLD_0886 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLD_0246 oxidoreductase, short chain dehydrogenase/reductase family protein K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CLD_0889 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CLD_0884 oxidoreductase, 2-nitropropane dioxygenase family K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9]
D CLD_1643 lipase/acylhydrolase, GDSL family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]
D CLD_1230 AMP-binding protein K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]
D CLD_2184 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CLD_0567 plsD; glycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CLD_0327 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:cbb01006]
D CLD_2754 putative geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CLD_2209 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLD_3230 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CLD_2842 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
C 01007 Amino acid related enzymes [BR:cbb01007]
D CLD_3466 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLD_1198 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLD_3364 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLD_1190 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CLD_1000 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLD_3487 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLD_0711 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLD_0687 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLD_1372 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLD_0594 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLD_0972 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLD_1486 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLD_0159 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLD_3547 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D CLD_1485 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLD_0973 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CLD_0238 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLD_0805 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLD_1176 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLD_0998 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLD_1403 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLD_2001 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLD_1410 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLD_1411 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLD_2242 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_2836 aspB; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CLD_3552 pyridoxal-phosphate-dependent aminotransferase family K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1]
D CLD_1381 aminotransferase, classes I and II K10907 K10907; aminotransferase [EC:2.6.1.-]
D CLD_2981 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CLD_3138 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLD_2661 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CLD_1818 aminotransferase, class IV K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CLD_3738 putative pleiotropic regulatory protein DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D CLD_1860 spore coat polysaccharide biosynthesis protein SpsC K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450 [BR:cbb00199]
D CLD_3520 cytochrome P450 K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4]
C 00194 Photosynthesis proteins [BR:cbb00194]
D CLD_0628 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CLD_0629 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CLD_0630 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CLD_0631 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CLD_0632 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CLD_0633 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CLD_0634 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CLD_0635 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CLD_0636 atpI; ATP synthase F0, I subunit K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:cbb03000]
D CLD_2435 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0187 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0053 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_2548 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_0910 transcriptional regulator, AraC family K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator
D CLD_3790 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLD_2472 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLD_0154 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLD_3673 bacterial transcription activator, effector binding protein K13653 K13653; AraC family transcriptional regulator
D CLD_0037 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D CLD_0121 methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D CLD_2974 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D CLD_3297 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D CLD_2367 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D CLD_0623 spoIIID; stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D CLD_A0079 spoIIID; sporulation transcriptional regulator spoiiid K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D CLD_2939 transcriptional regulator, DeoR family K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator
D CLD_1603 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
D CLD_0686 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CLD_2636 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor
D CLD_1739 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D CLD_3469 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CLD_3034 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D CLD_0119 transcriptional regulator, GntR family/aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CLD_3692 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CLD_1783 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator
D CLD_3374 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D CLD_3041 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
D CLD_0223 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D CLD_3729 HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CLD_0712 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D CLD_2313 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D CLD_2005 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLD_3166 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLD_1744 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLD_1728 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLD_0353 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CLD_1312 transcriptional regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D CLD_3218 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLD_3605 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CLD_0100 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CLD_3541 cyclic nucleotide-binding domain protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D CLD_3007 cyclic nucleotide-binding domain protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D CLD_3227 putative transcriptional regulator K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CLD_3391 rrf2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D CLD_1996 rrF2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D CLD_3801 putative arsenical resistance operon repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CLD_0268 putative cadmium resistance transcriptional regulator CadC K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D CLD_0038 conserved hypothetical protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D CLD_0134 cupin domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
D CLD_0689 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator
D CLD_2255 PadR-family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D CLD_3015 putative iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D CLD_0087 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D CLD_3444 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CLD_0016 putative DNA-binding protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D CLD_0936 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D CLD_1637 sigma-54 dependent transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLD_2927 acoR; aco operon transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLD_2909 sensory box sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLD_2687 aorR; aor transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLD_2913 sensory box sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLD_0161 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLD_2615 putative sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLD_2665 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D CLD_1217 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D CLD_2204 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D CLD_0274 conserved hypothetical protein K07727 K07727; putative transcriptional regulator
D CLD_2495 conserved hypothetical protein K07727 K07727; putative transcriptional regulator
D CLD_0180 DNA binding protein K07729 K07729; putative transcriptional regulator
D CLD_2280 putative DNA-binding protein K07729 K07729; putative transcriptional regulator
D CLD_0298 conserved domain protein K07729 K07729; putative transcriptional regulator
D CLD_2600 DNA-binding protein K07729 K07729; putative transcriptional regulator
D CLD_A0041 conserved domain protein K07729 K07729; putative transcriptional regulator
D CLD_2417 conserved domain protein K07729 K07729; putative transcriptional regulator
D CLD_1498 DNA-binding protein K07729 K07729; putative transcriptional regulator
D CLD_1111 conserved hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D CLD_0103 licT; transcriptional antiterminator, LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D CLD_3686 licT; transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D CLD_1715 licT; transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D CLD_1819 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator
D CLD_1735 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator
D CLD_3265 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D CLD_1967 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D CLD_0722 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D CLD_0946 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D CLD_0836 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLD_0834 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLD_1804 glpP; glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator
D CLD_2759 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D CLD_1584 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D CLD_0989 ctsR; transciptional repressor CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D CLD_0790 putative sensory box sigma-54 dependent transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D CLD_A0184 conserved domain protein K03973 pspC; phage shock protein C
D CLD_0550 transcriptional regulator, SorC family K05311 cggR; central glycolytic genes regulator
D CLD_2990 deoR; deoxyribonucleoside regulator K05346 deoR; deoxyribonucleoside regulator
D CLD_3073 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLD_1754 pyrR; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CLD_2106 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D CLD_3097 mraZ; mraZ protein K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:cbb03021]
D CLD_0237 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D CLD_A0078 dna-directed rna polymerase alpha chain (rnap alphasubunit) (transcriptase alpha chain) (rna polymerase subunit alpha) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLD_1053 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLD_1016 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLD_1017 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLD_2124 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CLD_1608 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D CLD_0762 RNA polymerase sigma-70 factor family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CLD_2263 RNA polymerase sigma-70 factor, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CLD_3736 RNA polymerase sigma-70 factor K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CLD_2023 RNA polymerase sigma-K factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLD_2104 sigG; RNA polymerase sigma-G factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLD_2103 sigE; RNA polymerase sigma-E factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLD_1453 sigF; RNA polymerase sigma-F factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor
D CLD_1005 sigH; RNA polymerase sigma-H factor K27000 sigH; RNA polymerase sigma-H factor
D CLD_0551 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CLD_1922 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D CLD_2219 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D CLD_2751 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D CLD_1011 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D CLD_1487 sigma-E factor regulator, RseC/MucC family K03803 rseC; sigma-E factor negative regulatory protein RseC
D CLD_0971 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CLD_0083 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CLD_0652 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:cbb03019]
D CLD_1554 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D CLD_2186 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLD_2006 RNA-metabolizing metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CLD_3274 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CLD_2237 HDIG/HD/KH domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CLD_0543 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLD_1325 HDIG domain protein K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-]
D CLD_0118 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CLD_1772 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2858 dbpA; ATP-dependent RNA helicase DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2860 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2614 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_3571 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CLD_0545 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLD_2228 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CLD_0652 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho
D CLD_1135 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11]
D CLD_1586 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLD_1225 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLD_2843 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CLD_1837 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CLD_1131 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ
C 03041 Spliceosome
C 03011 Ribosome [BR:cbb03011]
D CLD_3410 rpsA; ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CLD_2833 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1
D CLD_2205 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CLD_1030 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CLD_1102 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLD_1052 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CLD_1041 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CLD_0846 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CLD_1020 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CLD_1038 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CLD_1060 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CLD_1023 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CLD_1051 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CLD_1019 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CLD_1050 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CLD_1037 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CLD_2227 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CLD_2192 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CLD_1033 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CLD_0848 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CLD_1028 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CLD_1578 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CLD_1592 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CLD_1013 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CLD_1027 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CLD_1024 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CLD_1025 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CLD_1036 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CLD_1039 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CLD_0852 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CLD_1014 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CLD_1012 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CLD_1015 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CLD_1059 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CLD_1034 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CLD_1043 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CLD_1031 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CLD_1054 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CLD_1040 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CLD_2196 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CLD_1406 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CLD_1555 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CLD_1029 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CLD_1026 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CLD_1035 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CLD_1557 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CLD_2139 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CLD_1032 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CLD_1042 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CLD_0651 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CLD_2183 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CLD_1009 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CLD_0826 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CLD_1405 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CLD_1049 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CLD_1314 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25
D CLD_1424 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CLD_1018 ribosomal protein L7Ae family protein K07590 RP-L7A; large subunit ribosomal protein L7A
D CLD_0740 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0331 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0984 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0770 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0977 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0764 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0757 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0816 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0747 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_3805 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3813 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3815 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3811 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3822 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3817 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3809 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3807 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3820 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3806 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3812 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3821 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3816 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3819 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3810 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3808 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3818 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3814 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:cbb03009]
D CLD_2186 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLD_1600 era; GTP-binding protein Era K03595 era; GTPase
D CLD_1558 GTPase, Obg family K03979 obgE; GTPase [EC:3.6.5.-]
D CLD_2219 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA
D CLD_2751 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB
D CLD_1011 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG
D CLD_1249 RNA pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D CLD_0706 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CLD_2130 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CLD_2143 rsmD; RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CLD_1589 conserved hypothetical protein TIGR00046 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CLD_0833 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CLD_3096 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CLD_0724 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CLD_2757 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CLD_1003 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CLD_0914 conserved hypothetical protein TIGR00246 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CLD_2131 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CLD_1710 florfenicol/chloramphenicol resistance protein K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D CLD_1140 rumA; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D CLD_2827 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CLD_3118 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D CLD_1564 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CLD_3074 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CLD_1199 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CLD_0774 acetyltransferase, GNAT family K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
D CLD_2194 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
D CLD_2234 RNA modification enzyme, MiaB family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D CLD_1588 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D CLD_1554 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-]
D CLD_2003 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CLD_1001 RNase3 domain protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
D CLD_1772 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2858 dbpA; ATP-dependent RNA helicase DbpA K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2860 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2614 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CLD_2134 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CLD_2116 engA; ribosome-associated GTPase EngA K03977 engA; GTPase
D CLD_2198 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A
D CLD_1460 GTP-binding protein K03665 hflX; GTPase
D CLD_0644 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CLD_1481 putative GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CLD_2223 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CLD_2218 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP
D CLD_0823 S4 domain protein K14761 rlbA; ribosome-associated protein
D CLD_1597 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor
D CLD_1559 CRS1/YhbY domain protein K07574 yhbY; RNA-binding protein
D CLD_0608 yfiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
D CLD_3098 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
D CLD_2182 ribosomal protein L32 family protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:cbb03016]
D CLD_3163 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D CLD_2258 polyA polymerase family protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D CLD_1176 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLD_0998 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CLD_0687 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CLD_0594 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLD_0711 metG; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CLD_3487 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLD_0972 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CLD_1486 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLD_2001 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CLD_0159 asnS; asparaginyl-tRNA synthetase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
D CLD_0973 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CLD_1403 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CLD_0238 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLD_0805 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CLD_1000 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CLD_1372 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CLD_1485 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CLD_1410 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CLD_1411 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CLD_1198 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLD_3364 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLD_1190 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CLD_1482 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D CLD_1591 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CLD_3245 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CLD_0249 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CLD_2888 conserved hypothetical protein K22900 TRMO; tRNA (adenine37-N6)-methyltransferase [EC:2.1.1.-]
D CLD_1058 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CLD_2713 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CLD_2225 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CLD_1997 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_3387 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_0644 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CLD_2842 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CLD_0831 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CLD_0832 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CLD_1567 selD; selenide, water dikinase, selenocysteine-containing K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CLD_0827 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D CLD_3862 bacterial RNase P, class A K01978 rnpB; M1 RNA
D CLD_1748 ligT; 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
D CLD_3547 aspS; aspartyl-tRNA synthetase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23]
D CLD_3466 gltX; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CLD_1704 EbsC protein K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D CLD_3044 conserved hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
D CLD_0788 cytidine/deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D CLD_0969 dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CLD_2839 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CLD_1590 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
D CLD_2195 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CLD_1610 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217]
D CLD_0558 conserved hypothetical protein K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CLD_1409 RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family
D CLD_3384 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLD_1636 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CLD_0620 conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CLD_1471 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CLD_2995 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CLD_2998 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLD_3745 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CLD_2997 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CLD_0568 iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D CLD_1472 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CLD_0964 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CLD_1200 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CLD_1210 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CLD_1201 conserved hypothetical protein TIGR00150 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CLD_0776 thiF domain protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CLD_2147 conserved hypothetical protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-]
D CLD_0543 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CLD_2228 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:cbb03012]
D CLD_2222 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CLD_1404 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CLD_1216 putative drug resistance ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3
D CLD_2206 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D CLD_1008 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLD_1022 tuf-1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLD_0987 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CLD_1021 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CLD_1569 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D CLD_0647 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CLD_2208 frr; ribosome recycling factor K02838 frr; ribosome recycling factor
D CLD_0648 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CLD_0943 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CLD_1048 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CLD_2740 efp; translation elongation factor P K02356 efp; elongation factor P
D CLD_0606 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D CLD_1192 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:cbb03110]
D CLD_0341 clpB; clpB protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CLD_0992 putative negative regulator of genetic competence MecB/ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D CLD_1301 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CLD_2640 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
D CLD_1586 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLD_1225 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLD_1587 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CLD_0590 molecular chaperone, DnaJ family K03686 dnaJ; molecular chaperone DnaJ
D CLD_1393 hsp33; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33
D CLD_1585 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D CLD_3741 heat shock protein K13993 HSP20; HSP20 family protein
D CLD_1224 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D CLD_0942 putative protease K04771 degP; serine protease Do [EC:3.4.21.107]
D CLD_1178 hflB; ATP-dependent metallopeptidase HflB K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLD_0966 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLD_0349 putative Cell division protease FtsH homolog K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CLD_0635 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CLD_2356 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CLD_3772 hydrogenase nickel incorporation protein K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CLD_3774 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CLD_0312 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CLD_2355 hypB; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CLD_0922 putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CLD_0945 putative peptidyl-prolyl cis-trans isomerase K07533 prsA; foldase protein PrsA [EC:5.2.1.8]
D CLD_0744 peptidil-prolyl isomerase family protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CLD_1071 trx; thioredoxin K03671 TXN; thioredoxin
D CLD_3307 thioredoxin family protein K03671 TXN; thioredoxin
D CLD_2820 thioredoxin family protein K03671 TXN; thioredoxin
D CLD_3315 glutaredoxin-like protein, YruB-family K03676 grxC; glutaredoxin 3
C 04131 Membrane trafficking [BR:cbb04131]
D CLD_0549 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLD_1136 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CLD_2640 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system [BR:cbb04121]
C 03051 Proteasome [BR:cbb03051]
D CLD_2640 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:cbb03032]
D CLD_0347 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CLD_2435 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0187 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0053 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_2548 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_0949 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CLD_0825 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CLD_0854 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CLD_0877 dnaC family protein K02315 dnaC; DNA replication protein DnaC
D CLD_1501 putative ATP-binding protein K02315 dnaC; DNA replication protein DnaC
D CLD_2034 phage protein K02315 dnaC; DNA replication protein DnaC
D CLD_1607 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CLD_A0039 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CLD_A0006 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0847 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_A0158 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0356 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLD_1134 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLD_2217 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLD_0824 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_A0160 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_1577 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_A0017 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_0729 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLD_0507 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLD_A0014 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_0786 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_2199 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CLD_1531 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLD_1252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLD_0819 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CLD_0820 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CLD_1803 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CLD_1802 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CLD_2203 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CLD_3279 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
D CLD_3047 DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:cbb03036]
D CLD_2435 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0187 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0053 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_2548 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_2186 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CLD_0949 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CLD_0825 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CLD_2843 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein
D CLD_3729 HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D CLD_2188 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein
D CLD_2783 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D CLD_2784 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D CLD_2100 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CLD_0953 putative cell division protein FtsL K13052 divIC; cell division protein DivIC
D CLD_1117 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CLD_2233 putative stage III sporulation protein E K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CLD_3095 cell division protein FtsL homolog K03586 ftsL; cell division protein FtsL
D CLD_3089 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D CLD_3090 cell cycle protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CLD_1118 efflux ABC transporter, permease protein, FtsX family K09811 ftsX; cell division transport system permease protein
D CLD_2101 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CLD_1412 conserved hypothetical protein K09888 zapA; cell division protein ZapA
D CLD_1062 cwlD; N-acetylmuramoyl-L-alanine amidase CwlD K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1429 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_3119 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1430 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_2080 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1529 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_2469 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1546 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D CLD_1547 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D CLD_1548 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D CLD_3081 putative septum site-determining protein divIVA K04074 divIVA; cell division initiation protein
D CLD_3084 conserved hypothetical protein K09772 sepF; cell division inhibitor SepF
D CLD_1542 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLD_0622 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CLD_1543 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D CLD_1544 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD
D CLD_1549 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D CLD_0141 rodA; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D CLD_0835 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D CLD_0836 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLD_0834 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLD_1803 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CLD_1802 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CLD_0832 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CLD_0833 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CLD_2775 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D CLD_2047 phage integrase K04763 xerD; integrase/recombinase XerD
D CLD_1158 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLD_2847 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLD_2766 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD
D CLD_2720 site-specific recombinase K04763 xerD; integrase/recombinase XerD
D CLD_0948 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein
D CLD_0699 MRP protein homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CLD_1304 GTP-binding protein K03978 engB; GTP-binding protein
D CLD_1133 conserved hypothetical protein K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:cbb03400]
D CLD_0122 methylated-dna--protein-cysteine methyltransferase (6-o-methylguanine-dna methyltransferase) (mgmt) (o-6-methylguanine-dna-alkyltransferase) K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CLD_3023 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CLD_3302 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D CLD_1220 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]
D CLD_0566 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CLD_0237 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
D CLD_0106 putative mutator mutT protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CLD_3332 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CLD_0121 methylphosphotriester-DNA alkyltransferase K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
D CLD_0768 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLD_0713 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CLD_0120 methylated-dna--protein-cysteine methyltransferase K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
D CLD_0096 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CLD_3071 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CLD_1809 AP endonuclease, family 2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CLD_1810 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CLD_1252 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CLD_1531 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CLD_1122 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A
D CLD_1121 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B
D CLD_1128 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C
D CLD_1327 GIY-YIG domain protein K03703 uvrC; excinuclease ABC subunit C
D CLD_3238 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1251 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_A0129 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1179 conserved hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_3123 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1639 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CLD_1016 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CLD_1017 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CLD_A0078 dna-directed rna polymerase alpha chain (rnap alphasubunit) (transcriptase alpha chain) (rna polymerase subunit alpha) K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLD_1053 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CLD_2124 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CLD_0944 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CLD_2840 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS
D CLD_1418 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLD_0127 MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2
D CLD_2841 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL
D CLD_2752 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CLD_2753 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CLD_1134 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CLD_2217 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
D CLD_0824 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_A0160 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CLD_1577 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_A0017 DNA polymerase III, delta subunit superfamily K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CLD_0729 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CLD_0507 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CLD_A0014 dnaX; DNA polymerase III, subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_0786 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CLD_A0006 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0847 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_A0158 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0356 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLD_0611 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
D CLD_2236 recA; recA protein K03553 recA; recombination protein RecA
D CLD_1469 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CLD_1470 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CLD_2126 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CLD_0271 sbcC; exonuclease SbcCD, C subunit K03546 sbcC; DNA repair protein SbcC/Rad50
D CLD_0272 sbcD; exonuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11
D CLD_0993 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D CLD_0822 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D CLD_2142 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CLD_0784 recR; recombination protein RecR K06187 recR; recombination protein RecR
D CLD_2760 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CLD_0306 addA; ATP-dependent nuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
D CLD_0317 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D CLD_0819 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CLD_0820 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CLD_2203 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CLD_0949 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CLD_2014 recombinase, phage RecT family K07455 recT; recombination protein RecT
D CLD_3571 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
D CLD_1757 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D CLD_2845 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CLD_1356 recX; regulatory protein RecX K03565 recX; regulatory protein
D CLD_1760 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CLD_1761 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CLD_2224 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:cbb03029]
D CLD_2222 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CLD_1404 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CLD_2206 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts
D CLD_1008 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLD_1022 tuf-1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLD_0987 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CLD_1021 fusA; translation elongation factor G K02355 fusA; elongation factor G
D CLD_3172 helicase domain protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6]
D CLD_1600 era; GTP-binding protein Era K03595 era; GTPase
D CLD_1198 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLD_3364 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CLD_0594 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CLD_1486 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CLD_0973 glyS; glycyl-tRNA synthetase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CLD_3487 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CLD_1256 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CLD_1257 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CLD_1255 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CLD_A0006 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0847 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_A0158 single-strand binding protein K03111 ssb; single-strand DNA-binding protein
D CLD_0356 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein
D CLD_1586 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLD_1585 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE
D CLD_1225 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLD_1224 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES
D CLD_1587 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CLD_0590 molecular chaperone, DnaJ family K03686 dnaJ; molecular chaperone DnaJ
D CLD_1997 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_3387 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_0699 MRP protein homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CLD_0829 putative sporulation protein/membrane protein insertase, OxaA family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CLD_2640 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:cbb02000]
D CLD_2954 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLD_3507 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CLD_2953 ABC transporter ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLD_3506 ABC transport ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CLD_2670 ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLD_2693 putative ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLD_2671 putative ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLD_2694 ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CLD_3261 ABC transporter, ATP-binding protein/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLD_2295 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLD_2294 ABC transporter, ATP-binding transmembrane protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLD_1365 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLD_0439 ABC transporter, ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CLD_0197 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein
D CLD_1709 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D CLD_3495 drug resistance ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D CLD_3068 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CLD_3067 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CLD_3066 putative molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CLD_2678 tupA; tungstate ABC transporter, tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D CLD_2679 putative tungstate ABC transporter, permease protein TupB K05773 tupB; tungstate transport system permease protein
D CLD_2680 putative tungstate ABC transporter, ATP-binding protein TupC K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CLD_3415 ABC transporter, substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CLD_3414 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D CLD_3413 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CLD_0187 potCD; spermidine/putrescine transport system permease protein PotC/spermidine/putrescine-binding periplasmic protein PotD K11069 potD; spermidine/putrescine transport system substrate-binding protein
D CLD_0188 potB; spermidine/putrescine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein
D CLD_0189 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11]
D CLD_3454 putative ABC transporter, solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D CLD_3452 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CLD_3453 ABC transporter, permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CLD_3451 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CLD_2918 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein
D CLD_2919 glycine betaine/L-proline ABC transporter, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CLD_3170 putative lipoprotein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CLD_1362 periplasmic binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CLD_3169 putative ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D CLD_1359 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D CLD_3168 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D CLD_1360 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D CLD_3039 carbohydrate uptake ABC transporter, CUT1 family, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CLD_0556 lipoprotein, bmp family K07335 bmpA; basic membrane protein A and related proteins
D CLD_0554 sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein
D CLD_0553 sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein
D CLD_0555 sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein
D CLD_0679 putative arabinose-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D CLD_3036 carbohydrate uptake ABC transporter, CUT1 family, carbohydrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein
D CLD_3038 carbohydrate uptake ABC transporter, CUT1 family, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein
D CLD_3037 carbohydrate uptake ABC transporter, CUT1 family, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein
D CLD_0365 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLD_2110 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CLD_0364 phosphate uptake ABC transporter, PhoT family, permease protein K02037 pstC; phosphate transport system permease protein
D CLD_2111 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein
D CLD_0363 phosphate uptake ABC transporter, PhoT family, permease protein K02038 pstA; phosphate transport system permease protein
D CLD_2112 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein
D CLD_2113 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CLD_0362 phosphate uptake ABC transporter, PhoT family, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CLD_2607 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CLD_2608 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein
D CLD_2609 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CLD_0289 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CLD_0288 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CLD_0287 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CLD_0286 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CLD_0285 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CLD_3474 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLD_3473 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLD_3052 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein
D CLD_3475 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein
D CLD_3053 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein
D CLD_3476 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CLD_3054 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CLD_3407 putative ABC transporter, substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D CLD_0088 putative ABC transporter, substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein
D CLD_3406 ABC transporter, permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D CLD_0090 ABC transporter, permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein
D CLD_3405 ABC transporter, ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D CLD_0089 ABC transporter, ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein
D CLD_3388 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D CLD_3137 amino acid ABC transporter, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein
D CLD_3389 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein
D CLD_3136 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein
D CLD_3135 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein
D CLD_0296 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CLD_3126 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CLD_0297 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein
D CLD_0323 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D CLD_1386 oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein
D CLD_1258 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein
D CLD_1387 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein
D CLD_1388 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein
D CLD_1389 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein
D CLD_1390 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein
D CLD_3340 putative oligopeptide ABC transporter, oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLD_2886 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLD_3757 methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLD_3182 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CLD_3342 putative oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLD_2885 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLD_3181 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CLD_3343 putative oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLD_2884 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLD_3180 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CLD_2883 ABC transporter, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CLD_3179 peptide/opine/nickel uptake ABC transporter, PepT family, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CLD_0443 iron compound ABC transporter, iron compound-binding protein K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein
D CLD_0442 iron compound ABC transporter, permease protein K25288 fhuB; ferric hydroxamate/heme transport system permease protein
D CLD_0079 fhuB; ferrichrome transport system permease protein FhuB K25288 fhuB; ferric hydroxamate/heme transport system permease protein
D CLD_0078 fhuG; ferrichrome transport system permease protein FhuG K25289 fhuG; ferric hydroxamate/heme transport system permease protein
D CLD_0441 iron compound ABC transporter, permease protein K25289 fhuG; ferric hydroxamate/heme transport system permease protein
D CLD_0077 fhuC; ferrichrome transport ATP-binding protein FhuC K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16]
D CLD_0440 iron compound ABC transporter, ATP-binding protein K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16]
D CLD_3509 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D CLD_3511 iron chelate uptake ABC transporter, FeCT family, permease protein K25283 yclO; iron-siderophore transport system permease protein
D CLD_3512 iron chelate uptake ABC transporter, FeCT family, permease protein K25284 yclN; iron-siderophore transport system permease protein
D CLD_3510 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D CLD_0449 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLD_1645 putative iron chelate uptake ABC transporter, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLD_0080 ABC transporter, iron chelate uptake transporter FeCT family, periplasmic-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLD_0444 iron ABC transporter, iron-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLD_3591 putative iron chelate uptake ABC transporter, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CLD_0448 iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CLD_1647 iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CLD_3592 iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CLD_0447 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CLD_1646 putative iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CLD_3593 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CLD_3216 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D CLD_3215 iron chelate uptake ABC transporter, FeCT family, permease protein K25027 btuC; cobalamin transport system permease protein
D CLD_3214 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D CLD_3174 periplasmic solute binding protein family K09815 znuA; zinc transport system substrate-binding protein
D CLD_3176 putative metal ion ABC transporter, permease protein K09816 znuB; zinc transport system permease protein
D CLD_3175 putative metal ion ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CLD_3642 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein
D CLD_3641 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CLD_3643 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CLD_3653 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D CLD_2315 BioY family protein K03523 bioY; biotin transport system substrate-specific component
D CLD_2654 putative ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein
D CLD_1057 cobalt transport permease, CbiQ family K16785 ecfT; energy-coupling factor transport system permease protein
D CLD_1055 putative cobalt ABC transporter, ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLD_1056 putative cobalt ABC transporter, ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLD_2653 ABC transporter, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CLD_2652 putative ABC transporter K16925 ykoE; energy-coupling factor transport system permease protein
D CLD_1203 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D CLD_2338 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein
D CLD_2337 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4]
D CLD_2969 putative lantibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein
D CLD_2968 putative lantibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein
D CLD_2970 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein
D CLD_3004 ABC transporter, permease protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D CLD_3156 putative membrane protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D CLD_0254 sagI; drug ABC tranporter, ATP-binding/permease protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein
D CLD_3157 putative ABC transporter, permease protein K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D CLD_0255 sagH; ABC transporter, ATP-binding/permease protein SagH K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D CLD_3005 ABC transporter, permease protein K25143 lnrM; linearmycin/streptolysin S transport system permease protein
D CLD_0256 sagG; ABC transporter, ATP-binding protein SagG K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D CLD_3158 ABC transporter, ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D CLD_3006 ABC transporter, ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein
D CLD_2290 putative membrane protein K19310 bcrB; bacitracin transport system permease protein
D CLD_2289 antibiotic ABC transporter, ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein
D CLD_3146 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein
D CLD_3147 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein
D CLD_0431 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein
D CLD_3141 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein
D CLD_0432 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein
D CLD_3142 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein
D CLD_1785 ABC transporter, permease protein K16919 ytrC_D; acetoin utilization transport system permease protein
D CLD_1784 ABC transporter, ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein
D CLD_1118 efflux ABC transporter, permease protein, FtsX family K09811 ftsX; cell division transport system permease protein
D CLD_1117 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CLD_0129 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_0040 putative drug resistance ABC-2 type transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_1170 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_3378 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_0112 ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_0527 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_1627 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_2291 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_3798 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CLD_0191 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_1626 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_3362 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_0132 transcriptional regulator, LytR family K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_0113 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_0041 ABC Transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_0131 bacitracin transport ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_0798 putative bacitracin transport ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_3324 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_3726 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_3799 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_0528 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_1169 putative bacitracin transport ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_0504 ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_3597 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_1399 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_3379 bcrA; bacitracin ABC transporter, ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_0043 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_2696 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_2498 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CLD_2673 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_0167 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_3346 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_3042 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_3656 ABC transporter, ATP-binding/permease protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_3782 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_0700 putative macrolide efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_2490 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_0477 peptide ABC transporter, Pep4E family, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_3221 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_1363 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_0055 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_2497 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CLD_3220 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_3783 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_2489 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_3344 putative oligopeptide ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_0701 putative macrolide efflux ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_3043 peptide ABC transporter, Pep4E family, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_2674 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_0166 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_1364 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_0056 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_0478 peptide ABC transporter, Pep4E family, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CLD_1730 ABC transporter, ATP-binding protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D CLD_2790 transporter, monovalent cation:proton antiporter-2 (CPA2) family K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2
D CLD_1702 mate efflux family protein K26939 norM; MATE family, multidrug efflux pump
D CLD_0392 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D CLD_0714 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump
D CLD_1727 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLD_2677 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLD_2514 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLD_1732 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLD_1793 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLD_1984 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLD_3457 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLD_0446 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CLD_2941 major facilitator family transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter
D CLD_2513 transporter, major facilitator family K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D CLD_3488 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter
D CLD_1067 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CLD_2243 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D CLD_0481 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0460 PTS system, glucose family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_0472 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-]
D CLD_1820 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLD_3231 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199]
D CLD_1733 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CLD_0462 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_0484 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208]
D CLD_2949 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208]
D CLD_3191 phosphotransferase system domain protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211]
D CLD_3685 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLD_1717 PTS system, beta-glucoside-specific family, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLD_0102 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CLD_2638 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201]
D CLD_0475 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-]
D CLD_1164 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205]
D CLD_1163 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205]
D CLD_1161 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component
D CLD_1092 PTS system, glucitol/sorbitol-specific, IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198]
D CLD_1091 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198]
D CLD_1090 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component
D CLD_2483 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194]
D CLD_2484 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194]
D CLD_2485 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component
D CLD_1788 glpF; glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator
D CLD_3604 formate/nitrite transporter family protein K02598 nirC; nitrite transporter
D CLD_0196 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D CLD_0843 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel
D CLD_3438 mgtE; magnesium transporter K06213 mgtE; magnesium transporter
D CLD_2348 putative chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1911 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1912 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D CLD_2349 putative chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D CLD_1959 putative magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter
D CLD_0736 transporter, CorA metal ion transporter family K03284 corA; magnesium transporter
D CLD_0020 mercuric transport protein periplasmic component K08364 merP; periplasmic mercuric ion binding protein
D CLD_1633 transporter, HlyC/CorC family K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLD_1613 CBS/transporter-associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLD_A0073 ha70; hemagglutinin component HA70 K16626 ha-70; hemagglutinin components HA-22/23/53
D CLD_0428 lrgA family protein K06518 cidA; holin-like protein
D CLD_0514 putative lysine-specific permease K11733 lysP; lysine-specific permease
D CLD_2964 arcD; arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D CLD_2166 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CLD_0409 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter
D CLD_0662 spore germination protein K06311 yndE; spore germination protein
D CLD_2650 spore germination protein K06311 yndE; spore germination protein
D CLD_2648 spore germination protein K06311 yndE; spore germination protein
D CLD_0645 ZIP transporter family protein K07238 TC.ZIP; zinc transporter, ZIP family
D CLD_3392 zinc transporter, ZIP family K07238 TC.ZIP; zinc transporter, ZIP family
D CLD_3667 drug/metabolite transporter, DMT family K08978 TC.BAT1; bacterial/archaeal transporter family protein
D CLD_1692 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_1143 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_0897 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_3008 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_3705 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_3700 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CLD_2371 gntP; gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D CLD_0517 kdgT; 2-keto-3-deoxygluconate transporter K02526 kdgT; 2-keto-3-deoxygluconate permease
D CLD_3561 lctP; L-lactate permease K03303 lutP; lactate permease
D CLD_3432 choline/carnitine/betaine transporter K05020 opuD; glycine betaine transporter
D CLD_2641 transporter, monovalent cation:proton antiporter-2 (CPA2) family K11105 cvrA; potassium/hydrogen antiporter
D CLD_0390 transporter, monovalent cation:proton antiporter-2 (CPA2) family K11105 cvrA; potassium/hydrogen antiporter
D CLD_1714 transporter, monovalent cation:proton antiporter-2 (CPA2) family K26730 napA; Na+:H+ antiporter
D CLD_3240 putative Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein
D CLD_1407 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein
D CLD_3241 putative Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein
D CLD_1408 potassium uptake protein, TrkA family K03499 trkA; trk/ktr system potassium uptake protein
D CLD_2564 codB; cytosine permease K10974 codB; cytosine permease
D CLD_3072 pyrP; uracil permease K02824 uraA; uracil permease
D CLD_1655 xanthine/uracil permease family protein K24206 uacT; uric acid transporter
D CLD_1641 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CLD_1326 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CLD_2618 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CLD_2896 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease
D CLD_0216 chromate transporter protein K07240 chrA; chromate transporter
D CLD_0215 chromate transport protein K07240 chrA; chromate transporter
D CLD_1173 sulfate permease, SulP family K03321 TC.SULP; sulfate permease, SulP family
D CLD_1061 Na/Pi-cotransporter family protein/PhoU family protein K03324 yjbB; phosphate:Na+ symporter
D CLD_3117 polysaccharide biosynthesis family protein K06409 spoVB; stage V sporulation protein B
D CLD_0947 putative stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D CLD_3116 spoVB; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B
D CLD_1445 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D CLD_1993 auxin efflux carrier family protein K24180 mleP; malate permease and related proteins
D CLD_0603 putative membrane protein K23675 fmnP; riboflavin transporter
D CLD_3208 putative membrane protein K23675 fmnP; riboflavin transporter
D CLD_0195 probable proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter
D CLD_1945 putative membrane protein K16788 niaX; niacin transporter
D CLD_3090 cell cycle protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CLD_3278 putative membrane protein K23242 mntP; manganese efflux pump family protein
D CLD_3285 conserved domain protein K15383 K15383; MtN3 and saliva related transmembrane protein
D CLD_3284 conserved domain protein K15383 K15383; MtN3 and saliva related transmembrane protein
D CLD_0496 DsbD family protein K06196 ccdA; cytochrome c-type biogenesis protein
D CLD_2821 putative cytochrome c-type biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein
D CLD_1878 capsular exopolysaccharide family protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3]
D CLD_1876 capsular polysaccharide biosynthsis protein K19420 epsA; protein tyrosine kinase modulator
D CLD_3756 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D CLD_3481 feoA; ferrous ion transport protein A K04758 feoA; ferrous iron transport protein A
D CLD_3534 putative ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D CLD_3533 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D CLD_3482 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D CLD_3532 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D CLD_3754 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D CLD_0694 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein
C 02044 Secretion system [BR:cbb02044]
D CLD_3243 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLD_2730 putative pilin K02650 pilA; type IV pilus assembly protein PilA
D CLD_2718 general secretion pathway protein E K02652 pilB; type IV pilus assembly protein PilB
D CLD_2736 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
D CLD_2097 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D CLD_3083 YGGT family protein K02221 yggT; YggT family protein
D CLD_1566 putative comE operon protein 1 K02237 comEA; competence protein ComEA
D CLD_0639 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12]
D CLD_1576 ComE operon protein 3 K02238 comEC; competence protein ComEC
D CLD_0328 metallo-beta-lactamase family protein K02238 comEC; competence protein ComEC
D CLD_0609 comF protein, homolog K02242 comFC; competence protein ComFC
D CLD_1918 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CLD_0601 conserved hypothetical protein K04061 flhB2; flagellar biosynthesis protein
D CLD_1901 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CLD_1903 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CLD_1904 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CLD_1831 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CLD_1914 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CLD_1915 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CLD_1916 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CLD_1917 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB
D CLD_2087 TraG/TraD family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D CLD_0607 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CLD_1477 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CLD_1010 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CLD_1478 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CLD_0544 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CLD_1044 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CLD_2191 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CLD_2189 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CLD_1473 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC
D CLD_0829 putative sporulation protein/membrane protein insertase, OxaA family K03217 yidC; YidC/Oxa1 family membrane protein insertase
C 02042 Bacterial toxins [BR:cbb02042]
D CLD_A0068 botA; bontoxilysin A K06011 boNT; botulinum neurotoxin [EC:3.4.24.69]
D CLD_A0069 ntnH; botulinum neurotoxin type B1, nontoxic-nonhemagglutinin component, NTNH K16623 ntnH; botulinum neurotoxin type non-toxic component
D CLD_A0071 ha33; hemagglutinin component HA33 K16624 ha-33; main hemagglutinin component
D CLD_A0072 ha17; hemagglutinin component HA17 K16625 ha-17; hemagglutinin component HA-17
D CLD_A0073 ha70; hemagglutinin component HA70 K16626 ha-70; hemagglutinin components HA-22/23/53
D CLD_3032 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B
D CLD_1633 transporter, HlyC/CorC family K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLD_1613 CBS/transporter-associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CLD_0262 bacteriocin protoxin, streptolysin S family K11046 sagA; streptolysin S associated protein
D CLD_2963 hemolysin III K11068 hlyIII; hemolysin III
D CLD_3099 hlyIII; hemolysin III K11068 hlyIII; hemolysin III
D CLD_1931 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3]
D CLD_2936 colG; collagenase K01387 colA; microbial collagenase [EC:3.4.24.3]
D CLD_2707 cloSI; clostripain K08587 cloSI; clostripain [EC:3.4.22.8]
C 02022 Two-component system [BR:cbb02022]
D CLD_2109 sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3]
D CLD_2108 putative phosphate regulon DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CLD_0399 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CLD_0454 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3]
D CLD_0455 DNA-binding response regulator K07770 cssR; two-component system, OmpR family, response regulator CssR
D CLD_3595 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR
D CLD_3143 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLD_0434 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3]
D CLD_3144 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ
D CLD_0435 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ
D CLD_2657 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_2656 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CLD_0505 sensor protein VanS (Vancomycin resistance protein vanS)(Vancomycin histidine protein kinase) K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_0506 regulatory protein VanR K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0488 regulatory protein VanR K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0386 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_2251 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3]
D CLD_2250 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR
D CLD_2701 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLD_2966 putative lantibiotic biosynthesis sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3]
D CLD_2967 putative lantibiotic biosynthesis regulatory protein K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLD_2700 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR
D CLD_3655 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CLD_2765 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A
D CLD_0516 putative sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3]
D CLD_0515 response regulator K02475 K02475; two-component system, CitB family, response regulator
D CLD_3380 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3]
D CLD_3382 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA
D CLD_1214 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]
D CLD_1215 DNA-binding response regulator, LytTr family K02477 K02477; two-component system, LytTR family, response regulator
D CLD_1826 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLD_1828 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLD_3568 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLD_1824 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CLD_2861 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CLD_0142 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3]
D CLD_0143 response regulator K07719 glnL; two-component system, response regulator GlnL
C 02035 Bacterial motility proteins [BR:cbb02035]
D CLD_1826 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CLD_1829 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLD_1822 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CLD_2851 cheX; chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX
D CLD_1827 cheC; chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC
D CLD_1823 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44]
D CLD_1825 cheR; chemotaxis protein methyltransferase, CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CLD_1824 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CLD_1828 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLD_3568 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CLD_2861 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CLD_0305 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1763 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_3183 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2993 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_3028 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0350 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0198 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0073 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_0034 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2866 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2708 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1769 putative methyl-accepting chemotaxis protein TlpC K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1746 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1319 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2893 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_2624 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D CLD_1903 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D CLD_1904 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CLD_1905 fliJ; flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ
D CLD_1914 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ
D CLD_1915 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D CLD_1916 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D CLD_1917 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB
D CLD_1918 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D CLD_1902 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CLD_1830 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D CLD_1831 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D CLD_1901 fliF; flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CLD_1913 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL
D CLD_1900 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CLD_1906 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CLD_1898 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CLD_1899 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CLD_1907 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD
D CLD_1925 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF
D CLD_1926 flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG
D CLD_1909 flgE; flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE
D CLD_1834 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CLD_1835 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL
D CLD_1843 flagellin K02406 fliC; flagellin
D CLD_1897 flagellin K02406 fliC; flagellin
D CLD_1870 fliC; flagellin K02406 fliC; flagellin
D CLD_0531 flagellin protein K02406 fliC; flagellin
D CLD_1841 flagellar hook-associated protein K02407 fliD; flagellar hook-associated protein 2
D CLD_1840 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CLD_1922 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA
D CLD_2348 putative chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1911 motA; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA
D CLD_1912 motB; chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D CLD_2349 putative chemotaxis MotB protein K02557 motB; chemotaxis protein MotB
D CLD_1836 fliW; flagellar assembly factor FliW K13626 fliW; flagellar assembly factor FliW
D CLD_1832 negative regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM
D CLD_1838 flaG family protein K06603 flaG; flagellar protein FlaG
D CLD_1910 flagellar protein FlbD K02385 flbD; flagellar protein FlbD
D CLD_1919 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D CLD_1920 flhG; flagellar biosynthesis protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D CLD_2097 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D CLD_2730 putative pilin K02650 pilA; type IV pilus assembly protein PilA
D CLD_2718 general secretion pathway protein E K02652 pilB; type IV pilus assembly protein PilB
D CLD_3243 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CLD_2736 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN
C 03037 Cilium and associated proteins [BR:cbb03037]
D CLD_2790 transporter, monovalent cation:proton antiporter-2 (CPA2) family K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2
C 04812 Cytoskeleton proteins [BR:cbb04812]
D CLD_1542 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLD_0622 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CLD_A0083 hypothetical protein K18640 parM; plasmid segregation protein ParM
D CLD_2101 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CLD_2100 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CLD_1546 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC
D CLD_1547 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD
D CLD_1548 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor
D CLD_0835 soj; sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D CLD_0836 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CLD_0834 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:cbb04147]
D CLD_2640 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG
D CLD_0545 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CLD_0549 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CLD_0548 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CLD_1136 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CLD_3348 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
D CLD_1225 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CLD_1586 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CLD_1244 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CLD_1227 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CLD_1008 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLD_1022 tuf-1; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CLD_1591 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CLD_3245 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CLD_3035 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CLD_1331 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
D CLD_1045 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CLD_2619 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CLD_1480 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CLD_1895 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CLD_1894 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CLD_1656 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2]
D CLD_1789 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D CLD_0920 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CLD_3636 hemB; delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CLD_3436 D-isomer specific 2-hydroxyacid dehydrogenase family protein K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CLD_1667 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CLD_2921 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_0066 glycine cleavage system, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CLD_1334 electron transfer flavoprotein, alpha subunit/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit
D CLD_0547 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:cbb02048]
D CLD_2401 cas6; CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D CLD_A0192 cas; crispr-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D CLD_A0193 hypothetical protein K19114 csh1; CRISPR-associated protein Csh1
D CLD_A0194 conserved hypothetical protein K19115 csh2; CRISPR-associated protein Csh2
D CLD_A0195 cas5h; crispr-associated protein Cas5, hmari subtype K19116 cas5h; CRISPR-associated protein Cas5h
D CLD_2404 crispr-associated ramp protein K19134 csx10; CRISPR-associated protein Csx10
D CLD_1450 conserved hypothetical protein K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CLD_2435 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0187 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_A0053 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_2548 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CLD_2055 conserved hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]
D CLD_1112 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D CLD_0214 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D CLD_1111 conserved hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
D CLD_A0184 conserved domain protein K03973 pspC; phage shock protein C
D CLD_A0108 death-on-curing family protein K07341 doc; death on curing protein
D CLD_2252 death on curing protein K07341 doc; death on curing protein
D CLD_2101 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CLD_1542 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins
D CLD_0622 mbl; Mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CLD_1803 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
D CLD_1802 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
D CLD_1997 nifS; cysteine desulfurase NifS K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CLD_3387 aminotransferase, class V K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels [BR:cbb04040]
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules [BR:cbb04090]
C 01504 Antimicrobial resistance genes [BR:cbb01504]
D CLD_2537 GTP-binding elongation factor, TetM/TetO family K18220 tetM; ribosomal protection tetracycline resistance protein
D CLD_1710 florfenicol/chloramphenicol resistance protein K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D CLD_0197 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein
D CLD_1709 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein
D CLD_0512 streptogramin A acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-]
D CLD_2604 cat; chloramphenicol acetyltransferase K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28]
D CLD_0021 chloramphenicol O-acetyltransferase K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28]
D CLD_2372 fosfomycin resistance protein FosX K21252 fosX; fosfomycin resistance protein FosX
D CLD_0086 peptidase, M56 family K02172 blaR1; bla regulator protein blaR1
D CLD_0087 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D CLD_2657 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_2656 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CLD_3528 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0147 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CLD_0505 sensor protein VanS (Vancomycin resistance protein vanS)(Vancomycin histidine protein kinase) K18350 vanSC; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3]
D CLD_0506 regulatory protein VanR K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0488 regulatory protein VanR K18349 vanRC; two-component system, OmpR family, response regulator VanR
D CLD_0386 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:cbb00537]
D CLD_3348 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:cbb03100]
D CLD_0335 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLD_0980 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLD_0813 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CLD_0800 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_1265 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_1282 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_1273 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_0791 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_1286 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CLD_0329 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLD_0986 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLD_0985 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CLD_0866 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLD_0870 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLD_1395 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLD_0874 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CLD_0738 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLD_1398 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CLD_0592 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLD_1267 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLD_1276 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CLD_0864 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLD_0871 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLD_0868 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLD_0266 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CLD_1271 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1280 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1397 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1264 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1281 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1285 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1272 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1006 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CLD_1266 tRNA-His K14226 tRNA-His; tRNA His
D CLD_1275 tRNA-His K14226 tRNA-His; tRNA His
D CLD_0334 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLD_0981 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CLD_0955 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_0958 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1269 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1278 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1495 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1534 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CLD_1274 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_1283 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_0763 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_1268 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_0769 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_1277 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CLD_0814 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0979 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0957 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0962 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0956 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0959 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0960 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0961 tRNA-Met K14230 tRNA-Met; tRNA Met
D CLD_0745 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLD_0755 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLD_1396 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CLD_0934 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLD_1263 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLD_1284 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CLD_0801 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_0803 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_0802 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_0804 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_0787 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CLD_1007 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_0875 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_0619 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_0615 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_0867 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CLD_1206 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CLD_0614 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLD_0618 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CLD_0616 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_0872 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_0869 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_0865 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_1394 tRNA-Val K14237 tRNA-Val; tRNA Val
D CLD_1570 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D CLD_3805 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3813 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3815 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3811 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3822 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3817 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3809 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3807 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3820 rrs; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CLD_3806 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3812 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3821 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3816 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3819 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3810 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3808 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3818 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_3814 rrl; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CLD_0740 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0331 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0984 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0770 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0977 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0764 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0757 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0816 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_0747 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CLD_3824 srpB; bacterial signal recognition particle RNA K01983 ffs; SRP RNA
D CLD_3862 bacterial RNase P, class A K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CLD_2369 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409]
D CLD_2925 acoA; TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-]
D CLD_2924 acoB; TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-]
D CLD_0498 xanthine dehydrogenase family protein, iron-sulfur binding subunit K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3]
D CLD_1235 acyl-CoA dehydrogenase family protein K24016 acdA; 3-(aryl)acrylate reductase [EC:1.3.8.15]
D CLD_0234 ceo; N(5)-(carboxyethyl)ornithine synthase K00298 ceo; N5-(carboxyethyl)ornithine synthase [EC:1.5.1.24]
D CLD_1946 metallo-beta-lactamase family protein/flavodoxin K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4]
D CLD_3148 putative methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D CLD_2703 msrA; peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D CLD_2297 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D CLD_0247 putative thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CLD_3711 conserved hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D CLD_2272 putative flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17]
D CLD_1188 desulfoferrodoxin K05919 dfx; superoxide reductase [EC:1.15.1.2]
D CLD_2854 ferritin family protein K02217 ftnA; ferritin [EC:1.16.3.2]
D CLD_2911 oxidoreductase, NAD/FAD-binding K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D CLD_1218 oxidoreductase, NAD-binding K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D CLD_3802 arsenate reductase family protein K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4]
D CLD_3305 grdA; glycine reductase complex component A, selenocysteine-containing K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D CLD_3306 glycine/sarcosine/betaine reductase complex component A1 (Selenoprotein PA 1) (Thioredoxinreductase complex A 1) K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D CLD_3311 grdE; glycine reductase, subunits ABC K10671 grdE; glycine reductase complex component B subunit alpha and beta [EC:1.21.4.2]
D CLD_3309 grdB; glycine reductase complex component B, gamma subunit, selenocysteine-containing K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2]
D CLD_3303 grdD; glycine reductase complex component C, alpha subunit K21576 grdD; glycine/sarcosine/betaine reductase complex component C subunit alpha [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D CLD_3304 grdC; glycine reductase complex component C, beta subunit K21577 grdC; glycine/sarcosine/betaine reductase complex component C subunit beta [EC:1.21.4.2 1.21.4.3 1.21.4.4]
D CLD_3564 putative anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D CLD_0692 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]
D CLD_1317 pflA; pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLD_1347 glycyl-radical enzyme activating family protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLD_0906 radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLD_0926 radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CLD_2524 glycyl-radical enzyme activating family protein K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-]
D CLD_3709 nitroreductase family protein K15976 K15976; putative NAD(P)H nitroreductase [EC:1.-.-.-]
D CLD_0139 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D CLD_3070 putative methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
D CLD_3445 maa; maltose O-acetyltransferase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D CLD_2478 transferase, hexapeptide repeat family K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79]
D CLD_2320 acetyltransferase, GNAT family K03826 yiaC; putative acetyltransferase [EC:2.3.1.-]
D CLD_3703 acetyltransferase, GNAT family K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D CLD_3587 acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D CLD_2279 tgl; protein-glutamine gamma-glutamyltransferase K00686 tgl; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13]
D CLD_1439 glycosyl transferase, group 1 family protein K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D CLD_0681 conserved hypothetical protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D CLD_1323 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CLD_0374 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180]
D CLD_2368 conserved hypothetical protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220]
D CLD_3202 conserved hypothetical protein K23983 amiN; amicoumacin kinase [EC:2.7.1.230]
D CLD_2632 pfkB; 1-phosphofructokinase K25602 tagK; D-tagatose-1-phosphate kinase [EC:2.7.1.234]
D CLD_2141 DAK2 domain protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D CLD_0863 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D CLD_0994 putative DNA-binding protein K07067 disA; diadenylate cyclase [EC:2.7.7.85]
D CLD_1075 conserved hypothetical protein TIGR00159 K18672 dacA; diadenylate cyclase [EC:2.7.7.85]
D CLD_3372 conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D CLD_1983 putative phosphoenolpyruvate synthase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6]
D CLD_1452 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1]
D CLD_1957 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-]
D CLD_0991 ATP:guanido phosphotransferase domain protein K19405 mcsB; protein arginine kinase [EC:2.7.14.1]
D CLD_2381 CoA-transferase, family III K20882 hadA; (R)-2-hydroxy-4-methylpentanoate CoA-transferase [EC:2.8.3.24]
D CLD_2328 putative RNAase regulator K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]
D CLD_3409 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CLD_0963 spoIIE; stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16]
D CLD_1877 exopolysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]
D CLD_1961 PHP domain protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97]
D CLD_0851 DHH family protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59]
D CLD_1596 putative hydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-]
D CLD_0709 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CLD_0707 primase homolog K05985 rnmV; ribonuclease M5 [EC:3.1.26.8]
D CLD_A0131 thermonuclease (TNase) (Micrococcal nuclease)(Staphylococcal nuclease) K01174 nuc; micrococcal nuclease [EC:3.1.31.1]
D CLD_1712 prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_0005 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CLD_1943 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CLD_3693 putative peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CLD_2127 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CLD_0552 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D CLD_1449 polysaccharide deacetylase family protein K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-]
D CLD_1563 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CLD_2663 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CLD_1342 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D CLD_0643 low molecular weight protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2]
D CLD_0559 splB; spore photoproduct lyase K03716 splB; spore photoproduct lyase [EC:4.1.99.14]
D CLD_0044 67 kDa myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D CLD_2582 myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53]
D CLD_1108 carbohydrate kinase family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CLD_2382 putative (R)-2-hydroxyglutaryl-CoA dehydratase, alpha subunit K20025 hadB; (R)-2-hydroxyisocaproyl-CoA dehydratase alpha subunit [EC:4.2.1.157]
D CLD_2383 putative (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit K20026 hadC; (R)-2-hydroxyisocaproyl-CoA dehydratase beta subunit [EC:4.2.1.157]
D CLD_1233 fldB; R-phenyllactate dehydratase, medium subunit K23110 fldB; (R)-3-(aryl)lactoyl-CoA dehydratase alpha subunit [EC:4.2.1.175]
D CLD_1234 fldC; R-phenyllactate dehydratase, small subunit K23111 fldC; (R)-3-(aryl)lactoyl-CoA dehydratase beta subunit [EC:4.2.1.175]
D CLD_1654 dpaL; diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15]
D CLD_2523 formate acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4]
D CLD_3386 conserved hypothetical protein TIGR00268 K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D CLD_0682 conserved hypothetical protein TIGR00268 K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37]
D CLD_0683 conserved hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12]
D CLD_2388 putative CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLD_1232 fldI; R-phenyllactate dehydratase activator K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLD_2999 putative CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLD_1289 hgdC; (R)-hydroxyglutaryl-CoA dehydratase activator K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9]
D CLD_0666 cphA; cyanophycin synthetase K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30]
D CLD_0382 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2]
D CLD_0383 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2]
D CLD_0378 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]
D CLD_0217 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D CLD_3018 putative membrane protein K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D CLD_1929 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D CLD_3011 cation-transporting ATPase, P-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]
D CLD_0267 cadA; cadmium-translocating P-type ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21]
D CLD_1673 mgtA; magnesium-translocating P-type ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14]
D CLD_3262 cation-transporting ATPase, P-type K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D CLD_0781 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A
C 99982 Energy metabolism
D CLD_3570 rubrerythrin family protein K19824 fprB; rubrerythrin
D CLD_1339 iron-sulfur cluster-binding protein K05337 fer; ferredoxin
D CLD_0698 iron-sulfur cluster-binding protein K05337 fer; ferredoxin
D CLD_0381 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G
D CLD_0380 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E
D CLD_0379 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A
D CLD_1998 nifU; FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins
D CLD_3434 metallo-beta-lactamase family protein/flavodoxin K12264 norV; anaerobic nitric oxide reductase flavorubredoxin
D CLD_0074 hypothetical protein K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE
D CLD_2274 flavodoxin K03839 fldA; flavodoxin I
D CLD_1767 iron-sulfur cluster-binding protein K02574 napH; ferredoxin-type protein NapH
D CLD_1333 electron transfer flavoprotein, beta subunit/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D CLD_0557 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D CLD_0164 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
D CLD_3256 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D CLD_2162 prdD; PrdD protein K10795 prdD; D-proline reductase (dithiol)-stabilizing protein PrdD
D CLD_2163 prdE; PrdE protein K10796 prdE; D-proline reductase (dithiol)-stabilizing protein PrdE
D CLD_2528 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ
D CLD_2526 GTP-binding protein K04029 eutP; ethanolamine utilization protein EutP
D CLD_2531 ethanolamine utilization protein EutQ homolog K04030 eutQ; ethanolamine utilization protein EutQ
D CLD_2525 ethanolamine utilization protein EutS homolog K04031 eutS; ethanolamine utilization protein EutS
D CLD_3085 conserved hypothetical protein TIGR00044 K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D CLD_1620 putative cell wall hydrolase CwlJ K01449 cwlJ; cell wall hydrolase
D CLD_1074 cell wall hydrolase family protein K01449 cwlJ; cell wall hydrolase
C 99987 Cofactor metabolism
D CLD_0793 conserved hypothetical protein K03688 ubiB; ubiquinone biosynthesis protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D CLD_1089 gutM; glucitol operon activator protein K02466 gutM; glucitol operon activator protein
D CLD_0469 cold shock protein K03704 cspA; cold shock protein
D CLD_2867 cold shock protein K03704 cspA; cold shock protein
D CLD_3152 cspA; major cold shock protein CspA K03704 cspA; cold shock protein
D CLD_0604 RNA-binding protein K06959 tex; protein Tex
D CLD_2122 conserved hypothetical protein K09777 remA; extracellular matrix regulatory protein A
D CLD_0821 conserved hypothetical protein K24648 remB; extracellular matrix regulatory protein B
C 99974 Translation
D CLD_0954 putative RNA-binding protein K07571 K07571; S1 RNA binding domain protein
D CLD_3464 metallo-beta-lactamase family protein K07576 K07576; metallo-beta-lactamase family protein
C 99975 Protein processing
D CLD_0990 UVR domain protein K19411 mcsA; protein arginine kinase activator
D CLD_1299 tig; trigger factor K03545 tig; trigger factor
D CLD_0541 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CLD_2805 hypC; hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC
D CLD_2806 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D CLD_2807 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D CLD_2804 hypF; [NiFe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D CLD_2201 Mg chelatase family protein K07391 comM; magnesium chelatase family protein
D CLD_1650 selenium-dependent molybdenum hydroxylase system protein, YqeB family K07402 xdhC; xanthine dehydrogenase accessory factor
D CLD_1649 putative xanthine dehydrogenase accessory factor K07402 xdhC; xanthine dehydrogenase accessory factor
C 99976 Replication and repair
D CLD_1541 DNA repair protein, RadC family K03630 radC; DNA repair protein RadC
D CLD_2200 conserved hypothetical protein TIGR00252 K07460 yraN; putative endonuclease
D CLD_1175 GIY-YIG domain protein K07461 K07461; putative endonuclease
D CLD_2202 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D CLD_1995 ATPase, AAA family K07478 ycaJ; putative ATPase
D CLD_2436 phage primase, P4 family K06919 K06919; putative DNA primase/helicase
D CLD_A0156 transposase K07496 K07496; putative transposase
D CLD_2501 transposase K07496 K07496; putative transposase
D CLD_A0007 transposase K07496 K07496; putative transposase
D CLD_1724 integrase core domain protein K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D CLD_A0087 phage shock protein A K03969 pspA; phage shock protein A
D CLD_3428 rhodanese domain protein K03972 pspE; phage shock protein E
D CLD_0785 conserved hypothetical protein TIGR00103 K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CLD_3369 sugar transporter, GPH family K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family
D CLD_3162 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D CLD_2390 proton-linked D-serine/D-alanine/glycine symporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D CLD_0221 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family
D CLD_3016 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CLD_2310 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CLD_2875 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CLD_2475 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CLD_0384 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family
D CLD_0901 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family
D CLD_2593 sodium:neurotransmitter symporter family protein K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CLD_1640 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLD_3273 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLD_1989 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLD_1988 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLD_3460 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLD_3459 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLD_3320 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CLD_1229 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CLD_3759 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CLD_3758 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CLD_0160 nucleoside transporter, NupC family K03317 TC.CNT; concentrative nucleoside transporter, CNT family
C 99978 Cell growth
D CLD_0098 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling
D CLD_0782 bofA; sigma-K factor processing regulatory protein BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery
D CLD_3338 cotJB; CotJB protein K06333 cotJB; spore coat protein JB
D CLD_3337 cotJC; CotJC protein K06334 cotJC; spore coat protein JC
D CLD_0830 jag; jag protein K06346 jag; spoIIIJ-associated protein
D CLD_0716 spmA; spore maturation protein A K06373 spmA; spore maturation protein A
D CLD_0715 spmB; spore maturation protein B K06374 spmB; spore maturation protein B
D CLD_1451 spoIIAA; anti-sigma F factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist)
D CLD_2773 putative sporulation protein K06384 spoIIM; stage II sporulation protein M
D CLD_1580 stage II sporulation protein K06385 spoIIP; stage II sporulation protein P
D CLD_0660 spoIIR; stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R
D CLD_2742 spoIIIAA; stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA
D CLD_2743 spoIIIAB; stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB
D CLD_2744 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC
D CLD_2745 spoIIIAD; stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD
D CLD_2746 spoIIIAE; stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE
D CLD_2747 spoIIIAF; stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF
D CLD_2748 spoIIIAG; stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG
D CLD_2749 putative stage III sporulation protein AH K06397 spoIIIAH; stage III sporulation protein AH
D CLD_2119 spoIVA; stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A
D CLD_2024 resolvase family protein K06400 spoIVCA; site-specific DNA recombinase
D CLD_1454 spoVAC; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC
D CLD_1455 stage V sporulation protein AD family protein K06406 spoVAD; stage V sporulation protein AD
D CLD_1456 spoVAE; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE
D CLD_0937 spoVG; stage V sporulation protein G K06412 spoVG; stage V sporulation protein G
D CLD_2238 spoVS; stage V sporulation protein S K06416 spoVS; stage V sporulation protein S
D CLD_1492 small, acid-soluble spore protein beta K06419 SASP-B; small acid-soluble spore protein B (major beta-type SASP)
D CLD_3331 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor)
D CLD_3777 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor)
D CLD_3527 tlp; small, acid-soluble spore protein tlp K06434 tlp; small acid-soluble spore protein (thioredoxin-like protein)
D CLD_0671 sporulation peptidase YabG K06436 yabG; spore coat assemly protein
D CLD_1595 putative stage IV sporulation protein K06438 yqfD; similar to stage IV sporulation protein
D CLD_1776 gerAA; spore germination protein, GerAA K06295 gerKA; spore germination protein KA
D CLD_1670 spore germination protein, GerA family K06295 gerKA; spore germination protein KA
D CLD_2649 spore germination protein GerA K06295 gerKA; spore germination protein KA
D CLD_2647 germination protein, Ger(x)C family K06308 yfkR; spore germination protein
D CLD_0663 spore germination protein K06310 yndD; spore germination protein
D CLD_0658 ypeB; germination protein YpeB K06313 ypeB; spore germination protein
C 99993 Cell motility
C 99995 Signaling proteins
D CLD_0200 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D CLD_2007 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D CLD_0265 PhoH family protein K07175 phoH2; PhoH-like ATPase
C 99992 Structural proteins
D CLD_0702 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein
D CLD_3675 putative propanediol utilization protein PduB K27263 pduB; bacterial microcompartment shell protein
C 99994 Others
D CLD_2114 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein
D CLD_0231 hemerythrin-like metal-binding domain protein K07216 hr; hemerythrin
D CLD_2683 putative molybdopterin biosynthesis enzyme MoeA / molybdate binding domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CLD_3623 conserved hypothetical protein K26996 sdpI; immunity protein, SdpI family
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CLD_2336 acetyltransferase, GNAT family K02348 elaA; ElaA protein
D CLD_1129 PHP domain protein K04477 ycdX; putative hydrolase
D CLD_0136 csaA; CsaA protein K06878 K06878; tRNA-binding protein
D CLD_0182 tRNA-binding domain protein K06878 K06878; tRNA-binding protein
D CLD_3064 patatin-like phospholipase family protein K07001 K07001; NTE family protein
D CLD_0303 phospholipase family protein K07001 K07001; NTE family protein
D CLD_1127 putative metal-dependent hydrolase, membrane-bound K07038 K07038; inner membrane protein
D CLD_1104 YihY family protein K07058 K07058; membrane protein
D CLD_0280 lemA family protein K03744 lemA; LemA protein
D CLD_1098 membrane protein, DedA family K03975 dedA; membrane-associated protein
D CLD_3574 putative phage infection protein K01421 yhgE; putative membrane protein
D CLD_3573 putative phage infection protein K01421 yhgE; putative membrane protein
D CLD_1617 putative phage infection protein K01421 yhgE; putative membrane protein
D CLD_3517 conserved hypothetical protein K08982 K08982; putative membrane protein
C 99997 Function unknown
D CLD_1367 radical SAM domain protein K06871 K06871; uncharacterized protein
D CLD_1476 radical SAM domain protein K06871 K06871; uncharacterized protein
D CLD_0173 radical SAM domain protein K06871 K06871; uncharacterized protein
D CLD_0279 conserved hypothetical protein K06872 K06872; uncharacterized protein
D CLD_3500 conserved hypothetical protein K06888 K06888; uncharacterized protein
D CLD_0202 conserved hypothetical protein K06889 K06889; uncharacterized protein
D CLD_1688 hydrolase family protein K06889 K06889; uncharacterized protein
D CLD_2601 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D CLD_3688 alpha/beta hydrolase K06889 K06889; uncharacterized protein
D CLD_0563 conserved hypothetical protein K06889 K06889; uncharacterized protein
D CLD_0862 CoA-binding protein K06929 K06929; uncharacterized protein
D CLD_2193 conserved hypothetical protein K06960 K06960; uncharacterized protein
D CLD_1004 conserved hypothetical protein K06962 K06962; uncharacterized protein
D CLD_2129 putative neutral zinc metallopeptidase K06973 K06973; uncharacterized protein
D CLD_0123 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein
D CLD_3255 nimB; 5-nitroimidazole antibiotic resistance protein NimB K07005 K07005; uncharacterized protein
D CLD_3732 nimA; 5-nitroimidazole antibiotic resistance protein NimA K07005 K07005; uncharacterized protein
D CLD_0125 putative 5-nitroimidazole antibiotic resistance protein K07005 K07005; uncharacterized protein
D CLD_2603 conserved hypothetical protein K07069 K07069; uncharacterized protein
D CLD_2375 conserved hypothetical protein K07078 K07078; uncharacterized protein
D CLD_3045 oxidoreductase, aldo/keto reductase family K07079 K07079; uncharacterized protein
D CLD_1137 oxidoreductase, aldo/keto reductase family K07079 K07079; uncharacterized protein
D CLD_1680 putative membrane protein K07090 K07090; uncharacterized protein
D CLD_1322 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D CLD_1262 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D CLD_3569 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein
D CLD_0600 Ser/Thr protein phosphatase family protein K07099 K07099; uncharacterized protein
D CLD_0811 transcriptional regulator, biotin repressor family K07105 K07105; uncharacterized protein
D CLD_2975 putative membrane protein K07112 K07112; uncharacterized protein
D CLD_2971 putative membrane protein K07112 K07112; uncharacterized protein
D CLD_2977 putative membrane protein K07112 K07112; uncharacterized protein
D CLD_0464 conserved hypothetical protein K07118 K07118; uncharacterized protein
D CLD_2562 radical SAM domain protein K07129 K07129; uncharacterized protein
D CLD_1077 oxidoreductase, FAD-binding K07137 K07137; uncharacterized protein
D CLD_0857 pyridine nucleotide-disulphide oxidoreductase family protein K07137 K07137; uncharacterized protein
D CLD_0929 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein
D CLD_1612 conserved hypothetical protein K07164 K07164; uncharacterized protein
D CLD_0828 conserved hypothetical protein TIGR00278 K08998 K08998; uncharacterized protein
D CLD_1593 GatB/Yqey domain protein K09117 K09117; uncharacterized protein
D CLD_0809 putative membrane protein K09118 K09118; uncharacterized protein
D CLD_0097 conserved hypothetical protein K09155 K09155; uncharacterized protein
D CLD_3585 conserved hypothetical protein K09702 K09702; uncharacterized protein
D CLD_0018 conserved hypothetical protein K09705 K09705; uncharacterized protein
D CLD_1821 conserved hypothetical protein K09749 K09749; uncharacterized protein
D CLD_1629 conserved hypothetical protein K09764 K09764; uncharacterized protein
D CLD_0597 conserved hypothetical protein K09766 K09766; uncharacterized protein
D CLD_1245 YaiI/YqxD family protein K09768 K09768; uncharacterized protein
D CLD_0213 conserved hypothetical protein K09770 K09770; uncharacterized protein
D CLD_0321 conserved hypothetical protein K09779 K09779; uncharacterized protein
D CLD_2244 conserved hypothetical protein K09779 K09779; uncharacterized protein
D CLD_2190 helix-turn-helix protein, YlxM/p13 family K09787 K09787; uncharacterized protein
D CLD_0124 conserved hypothetical protein K09790 K09790; uncharacterized protein
D CLD_2859 RNA-binding protein K00243 K00243; uncharacterized protein
D CLD_1951 conserved hypothetical protein K09931 K09931; uncharacterized protein
D CLD_3189 conserved hypothetical protein K09957 K09957; uncharacterized protein
D CLD_1166 conserved hypothetical protein K09963 K09963; uncharacterized protein
D CLD_3190 conserved hypothetical protein K09963 K09963; uncharacterized protein
D CLD_3350 conserved hypothetical protein K05967 K05967; uncharacterized protein
D CLD_3450 conserved hypothetical protein K01163 K01163; uncharacterized protein
D CLD_1556 conserved hypothetical protein K07584 ysxB; uncharacterized protein
D CLD_2220 conserved hypothetical protein K07742 ylxR; uncharacterized protein
!
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 20, 2024