+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Cercospora beticola</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        CB0940_01051 mRNA cap guanine-N7 methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        CB0940_01058 Cyclin-dependent kinase 1	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        CB0940_11089 Serine/threonine-protein kinase crk1	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        CB0940_08552 mRNA-capping enzyme subunit alpha	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
D      Cap binding complex
E        CB0940_09860 Nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        CB0940_08971 Nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        CB0940_09105 Pre-mRNA cleavage factor Im 25 kDa subunit 2	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        CB0940_07034 mRNA cleavage and polyadenylation factor CLP1	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        CB0940_03421 hypotheticalsprotein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        CB0940_04351 Protein CFT1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        CB0940_10615 Cleavage factor two protein 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        CB0940_02729 Endoribonuclease	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        CB0940_04757 mRNA 3'-end-processing protein yth-1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        CB0940_10569 putative RING finger protein	K15541 MPE1; protein MPE1 
E        CB0940_08791 Polyadenylation factor subunit 2	K15542 PFS2; polyadenylation factor subunit 2 
E        CB0940_03264 Set1 complex component swd2	K14962 WDR82; COMPASS component SWD2 
E        CB0940_00157 Serine/threonine-protein phosphatase PP-Z	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CB0940_00971 Serine/threonine-protein phosphatase PP1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CB0940_07510 RNA polymerase II subunit A C-terminal domain phosphatase ssu-72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        CB0940_10050 Cleavage stimulation factor subunit 2 tau variant	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        CB0940_02158 mRNA 3'-end-processing protein rna-14	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        CB0940_00880 mRNA cleavage and polyadenylation specificity factor complex subunit pta1	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        CB0940_11156 Small nuclear ribonucleoprotein-associated protein B	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        CB0940_03256 Small nuclear ribonucleoprotein Sm D3	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        CB0940_03929 Small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        CB0940_07082 Small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        CB0940_10615 Cleavage factor two protein 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        CB0940_02729 Endoribonuclease	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        CB0940_10050 Cleavage stimulation factor subunit 2 tau variant	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        CB0940_00880 mRNA cleavage and polyadenylation specificity factor complex subunit pta1	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        CB0940_03103 Transcription elongation factor spt4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        CB0940_01265 Transcription elongation factor spt5	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        CB0940_03168 putative methyltransferase-like protein	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
D      Poly(A) addition factors
E        CB0940_02551 Poly(A) polymerase pla1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
D      CB0940_09833 KIN17-like protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      CB0940_01540 hypothetical protein	K27103 SRRT; serrate RNA effector molecule 
D      CB0940_10682 hypothetical protein	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        CB0940_07559 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        CB0940_00814 Protein mago nashi	K12877 MAGOH; protein mago nashi 
E        CB0940_07044 hypothetical protein	K12881 THOC4; THO complex subunit 4 
E        CB0940_08127 hypothetical protein	K12881 THOC4; THO complex subunit 4 
E        CB0940_01515 ATP-dependent RNA helicase SUB2	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        CB0940_01516 ATP-dependent RNA helicase sub2	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        CB0940_09465 ATP-dependent RNA helicase fal1	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        CB0940_05983 hypothetical protein	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        CB0940_02956 hypothetical protein	K14324 SAP18; histone deacetylase complex subunit SAP18 
D      TREX complex
E        CB0940_06001 THO complex subunit 1	K12878 THOC1; THO complex subunit 1 
E        CB0940_09728 THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        CB0940_00282 putative WD repeat-containing protein	K12880 THOC3; THO complex subunit 3 
E        CB0940_07044 hypothetical protein	K12881 THOC4; THO complex subunit 4 
E        CB0940_08127 hypothetical protein	K12881 THOC4; THO complex subunit 4 
E        CB0940_11013 putative THOC5 family protein	K13174 THOC5; THO complex subunit 5 
D      TREX-2 complex
E        CB0940_10550 PCI domain-containing protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        CB0940_00744 hypothetical protein	K10881 SHFM1; 26 proteasome complex subunit DSS1 
D      Nuclear pore complex
E        CB0940_08100 Protein MLP1	K09291 TPR; nucleoprotein TPR 
E        CB0940_04971 Nucleoporin GLE2	K14298 RAE1; mRNA export factor 
E        CB0940_00165 Protein transport protein sec13	K14004 SEC13; protein transport protein SEC13 
E        CB0940_03314 Nucleoporin NUP57	K14308 NUP54; nuclear pore complex protein Nup54 
E        CB0940_07592 Nucleoporin NSP1	K14306 NUP62; nuclear pore complex protein Nup62 
E        CB0940_06341 Nucleoporin NIC96	K14309 NUP93; nuclear pore complex protein Nup93 
E        CB0940_08263 Nucleoporin	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        CB0940_01369 Nucleoporin NUP84	K14301 NUP107; nuclear pore complex protein Nup107 
E        CB0940_05201 Nucleoporin	K14300 NUP133; nuclear pore complex protein Nup133 
E        CB0940_00867 Nucleoporin	K14311 NUP188; nuclear pore complex protein Nup188 
E        CB0940_03976 Nucleoporin	K14312 NUP155; nuclear pore complex protein Nup155 
E        CB0940_02894 Nucleoporin	K14310 NUP205; nuclear pore complex protein Nup205 
E        CB0940_06843 Nucleoporin NUP49	K14307 NUPL1; nucleoporin p58/p45 
E        CB0940_04807 Nucleoporin NDC1	K14315 NDC1; nucleoporin NDC1 
E        CB0940_03969 Nucleoporin SEH1	K14299 SEH1; nucleoporin SEH1 
E        CB0940_05755 hypothetical protein	K18716 NUP42; nucleoporin NUP42 
E        CB0940_08970 Nucleoporin NUP82	K18719 NUP82; nucleoporin NUP82 
E        CB0940_01201 hypothetical protein	K18723 GLE1; nucleoporin GLE1 
E        CB0940_04661 mRNA export factor mex67	K14284 NXF; nuclear RNA export factor 
E        CB0940_11536 hypothetical protein	K14285 NXT1_2; NTF2-related export protein 1/2 
E        CB0940_09825 Nucleoporin POM34	K18724 POM34; nucleoporin POM34 
E        CB0940_05772 Nucleoporin	K18725 POM152; nucleoporin POM152 
D      Ran-mediated transport factors
E        CB0940_07894 GTP-binding nuclear protein GSP1/Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        CB0940_02680 UBX domain-containing protein 3	K18726 FAF2; FAS-associated factor 2 
E        CB0940_03069 Cell division control protein 48	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        CB0940_04862 Exportin-1	K14290 XPO1; exportin-1 
E        CB0940_00066 Ran GTPase-activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        CB0940_01145 Eukaryotic translation initiation factor 4E-1	K03259 EIF4E; translation initiation factor 4E 
E        CB0940_09403 Eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        CB0940_04068 ATP-dependent RNA helicase eIF4A	K03257 EIF4A; translation initiation factor 4A 
E        CB0940_06003 Eukaryotic translation initiation factor 4 gamma	K03260 EIF4G; translation initiation factor 4G 
E        CB0940_02946 putative RNA-binding protein sce3	K03258 EIF4B; translation initiation factor 4B 
E        CB0940_05831 ATP-dependent RNA helicase DED1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CB0940_10980 ATP-dependent RNA helicase DED1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CB0940_03475 GYF domain-containing protein mpd2	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        CB0940_08269 Polyadenylate-binding protein, cytoplasmic and nuclear	K13126 PABPC; polyadenylate-binding protein 
E        CB0940_06648 putative ATP-dependent RNA helicase	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        CB0940_06669 Antiviral helicase SLH1	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        CB0940_00715 Translation machinery-associated protein 20	K07575 MCTS; malignant T-cell-amplified sequence 
E        CB0940_01955 Translation machinery-associated protein 22	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        CB0940_10810 hypothetical protein	K14294 WIBG; partner of Y14 and mago 
E        CB0940_10380 putative RNA-binding protein	K14411 MSI; RNA-binding protein Musashi 
E        CB0940_00788 HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        CB0940_07567 Protein dom34	K06965 PELO; protein pelota 
E        CB0940_04584 Polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        CB0940_00324 ATP-dependent RNA helicase DBP5	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        CB0940_07207 Pre-mRNA-splicing factor syf1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        CB0940_01626 hypothetical protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        CB0940_06630 Guanine nucleotide exchange factor SRM1	K11493 RCC1; regulator of chromosome condensation 
E        CB0940_04018 THP3	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        CB0940_09879 Eukaryotic peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        CB0940_01136 Eukaryotic peptide chain release factor GTP-binding subunit	K03267 ERF3; peptide chain release factor subunit 3 
E        CB0940_00339 Regulator of nonsense transcripts 1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        CB0940_03779 Regulator of nonsense transcripts UPF2	K14327 UPF2; regulator of nonsense transcripts 2 
E        CB0940_07394 hypothetical protein	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        CB0940_06739 Serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        CB0940_00672 Protein phosphatase PP2A regulatory subunit A	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        CB0940_00847 Protein phosphatase PP2A regulatory subunit B	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        CB0940_09766 Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        CB0940_03475 GYF domain-containing protein mpd2	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        CB0940_02719 GTP-binding protein cgp-1	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        CB0940_00262 Pumilio domain-containing protein	K14844 PUF6; pumilio homology domain family member 6 
E        CB0940_02004 RNA-binding protein rnc1	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        CB0940_09653 PAB1-binding protein 2	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        CB0940_09118 Myosin-2	K10357 MYO5; myosin V 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        CB0940_01957 RNA-binding protein Nova-1	K13210 FUBP; far upstream element-binding protein 
E        CB0940_01355 Elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        CB0940_02710 Elongation factor 1-gamma 1	K03233 EEF1G; elongation factor 1-gamma 
E        CB0940_02990 putative sterigmatocystin biosynthesis protein stcT	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        CB0940_01202 Virulence protein SSD1	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        CB0940_09196 5'-3' exoribonuclease 1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        CB0940_02229 Protein argonaute 7	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        CB0940_05605 Protein argonaute	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        CB0940_08319 Protein argonaute 1A	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        CB0940_01145 Eukaryotic translation initiation factor 4E-1	K03259 EIF4E; translation initiation factor 4E 
E        CB0940_09403 Eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        CB0940_00339 Regulator of nonsense transcripts 1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        CB0940_05831 ATP-dependent RNA helicase DED1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CB0940_10980 ATP-dependent RNA helicase DED1	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CB0940_09617 ATP-dependent RNA helicase dhh1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        CB0940_02613 hypothetical protein	K18749 LSM14; protein LSM14 
E        CB0940_07880 putative helicase Mov10l1	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        CB0940_03469 Importin subunit beta-2	K18752 TNPO1; transportin-1 
E        CB0940_08502 cAMP-dependent protein kinase type 2	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        CB0940_08565 Protein kinase DC2	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        CB0940_00817 putative HTH La-type RNA-binding protein	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        CB0940_03267 mRNA decapping complex subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        CB0940_00552 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        CB0940_00641 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        CB0940_02826 putative U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        CB0940_03598 putative U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        CB0940_11328 Sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        CB0940_11289 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        CB0940_02488 Sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        CB0940_00223 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        CB0940_09118 Myosin-2	K10357 MYO5; myosin V 
E        CB0940_03134 Tubulin alpha chain	K07374 TUBA; tubulin alpha 
E        CB0940_06307 General negative regulator of transcription subunit 1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        CB0940_04046 General negative regulator of transcription subunit 2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        CB0940_12083 General negative regulator of transcription subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        CB0940_01425 putative general negative regulator of transcription	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        CB0940_05352 Glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        CB0940_09538 CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        CB0940_01759 PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        CB0940_02681 PAB-dependent poly(A)-specific ribonuclease subunit PAN3	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        CB0940_07194 DNA topoisomerase 2-associated protein pat1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        CB0940_02652 hypothetical protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        CB0940_03779 Regulator of nonsense transcripts UPF2	K14327 UPF2; regulator of nonsense transcripts 2 
E        CB0940_07394 hypothetical protein	K14328 UPF3; regulator of nonsense transcripts 3 
E        CB0940_00500 DNA-directed RNA polymerase II subunit rpb7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Stress granule specific factors
E        CB0940_02434 Oligouridylate-binding protein 1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        CB0940_08269 Polyadenylate-binding protein, cytoplasmic and nuclear	K13126 PABPC; polyadenylate-binding protein 
E        CB0940_01464 putative G3BP-like protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        CB0940_05602 Eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        CB0940_11512 Eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        CB0940_04068 ATP-dependent RNA helicase eIF4A	K03257 EIF4A; translation initiation factor 4A 
E        CB0940_09465 ATP-dependent RNA helicase fal1	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        CB0940_02946 putative RNA-binding protein sce3	K03258 EIF4B; translation initiation factor 4B 
E        CB0940_06003 Eukaryotic translation initiation factor 4 gamma	K03260 EIF4G; translation initiation factor 4G 
E        CB0940_11614 Guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        CB0940_04661 mRNA export factor mex67	K14284 NXF; nuclear RNA export factor 
E        CB0940_03051 Histone deacetylase clr3	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        CB0940_03267 mRNA decapping complex subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        CB0940_09617 ATP-dependent RNA helicase dhh1	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        CB0940_02652 hypothetical protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        CB0940_07194 DNA topoisomerase 2-associated protein pat1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        CB0940_00552 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        CB0940_00641 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        CB0940_02826 putative U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        CB0940_03598 putative U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        CB0940_11328 Sm-like protein LSM5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        CB0940_11289 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        CB0940_02488 Sm-like protein LSM7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        CB0940_00223 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        CB0940_09196 5'-3' exoribonuclease 1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        CB0940_11921 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        CB0940_07016 m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        CB0940_08267 Exosome complex component csl4	K07573 CSL4; exosome complex component CSL4 
E        CB0940_11703 Exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        CB0940_07770 Exosome complex component SKI6	K11600 RRP41; exosome complex component RRP41 
E        CB0940_07008 Exosome complex component MTR3	K12587 MTR3; exosome complex component MTR3 
E        CB0940_00429 Exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
E        CB0940_00998 hypothetical protein	K12586 RRP43; exosome complex component RRP43 
E        CB0940_08816 Exosome complex component rrp45	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        CB0940_00238 Exosome complex exonuclease DIS3	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        CB0940_10004 Exosome complex exonuclease rrp6	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        CB0940_02179 Nuclear nucleic acid-binding protein	K12592 C1D; exosome complex protein LRP1 
D      TRAMP complex
E        CB0940_06079 Poly(A) RNA polymerase protein 1	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        CB0940_04887 ATP-dependent RNA helicase mtr4	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        CB0940_06648 putative ATP-dependent RNA helicase	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        CB0940_09625 Superkiller protein 3	K12600 SKI3; superkiller protein 3 
E        CB0940_05235 Meiotic recombination protein rec14	K12601 SKI8; superkiller protein 8 
D      Ccr4-NOT complex
E        CB0940_05352 Glucose-repressible alcohol dehydrogenase transcriptional effector	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        CB0940_06307 General negative regulator of transcription subunit 1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        CB0940_04046 General negative regulator of transcription subunit 2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        CB0940_12083 General negative regulator of transcription subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        CB0940_01425 putative general negative regulator of transcription	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        CB0940_09538 CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        CB0940_00636 Cell differentiation protein rcd1	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        CB0940_02461 putative ABC transporter ATP-binding protein	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        CB0940_04762 Protein SKG3	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        CB0940_01759 PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        CB0940_02681 PAB-dependent poly(A)-specific ribonuclease subunit PAN3	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        CB0940_08523 hypotheticalsprotein	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        CB0940_06571 ATP-dependent RNA helicase DHX36	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        CB0940_07016 m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        CB0940_02357 Protein NRDE2	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        CB0940_09550 Protein vts1	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        CB0940_06509 Double-strand-specific pac1 ribonuclease	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        CB0940_05935 putative oligoribonuclease	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        CB0940_11203 Enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        CB0940_06200 ATP-dependent 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        CB0940_04013 Heat shock 70 kDa protein	K04043 dnaK; molecular chaperone DnaK 
E        CB0940_09914 Heat shock protein 60	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        CB0940_11703 Exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        CB0940_08267 Exosome complex component csl4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        CB0940_07770 Exosome complex component SKI6	K11600 RRP41; exosome complex component RRP41 
E        CB0940_00429 Exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024