+D GENES KO #

  KEGG Orthology (KO) - Clostridium botulinum F Langeland

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A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:cbf00010] D CLI_1683 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CLI_3449 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CLI_3557 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CLI_2680 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D CLI_0596 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D CLI_0258 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CLI_0293 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CLI_0291 gap-1; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CLI_1184 gap-2; glyceraldehyde-3-phosphate dehydrogenase, type I K00150 gap2; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) [EC:1.2.1.59] D CLI_0292 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CLI_0294 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CLI_0295 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CLI_3556 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CLI_2994 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CLI_1710 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_1276 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CLI_2810 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CLI_3605 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D CLI_1599 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CLI_0416 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_3174 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3864 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_1339 putative glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D CLI_2350 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating) K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D CLI_3536 glycosyl hydrolase, family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CLI_0963 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CLI_1285 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CLI_2904 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CLI_0344 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0363 PTS system, glucose/maltose-specific, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0352 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0341 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_0361 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_1421 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CLI_2804 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] C 00020 Citrate cycle (TCA cycle) [PATH:cbf00020] D CLI_0502 HMGL-related enzyme K05942 E2.3.3.3; citrate (Re)-synthase [EC:2.3.3.3] D CLI_0503 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D CLI_0504 dehydrogenase, isocitrate/isopropylmalate family K00030 IDH3; isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_3605 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D CLI_3606 putative 2-oxoacid:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3] D CLI_3624 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D CLI_3623 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D CLI_3482 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D CLI_1710 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CLI_1276 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CLI_2810 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] C 00030 Pentose phosphate pathway [PATH:cbf00030] D CLI_3449 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CLI_0723 hypothetical protein K07404 pgl; 6-phosphogluconolactonase [EC:3.1.1.31] D CLI_2563 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CLI_3578 transketolase, pyridine binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CLI_3579 transketolase, thiamine diphosphate binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CLI_1378 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D CLI_2200 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D CLI_0199 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CLI_1645 deoC; deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D CLI_1646 rbsK; ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15] D CLI_3174 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3864 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3764 prsA-2; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CLI_0365 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D CLI_1339 putative glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D CLI_2350 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) (phosphorylating) K00131 gapN; glyceraldehyde-3-phosphate dehydrogenase (NADP+) [EC:1.2.1.9] D CLI_0366 putative 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D CLI_2002 aor; aldehyde ferredoxin oxidoreductase, tungsten-containing K03738 aor; aldehyde:ferredoxin oxidoreductase [EC:1.2.7.5] D CLI_0258 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CLI_2680 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D CLI_0596 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D CLI_3557 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] C 00040 Pentose and glucuronate interconversions [PATH:cbf00040] D CLI_3172 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CLI_2563 rpe; ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D CLI_3601 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D CLI_2190 oxidoreductase, zinc-binding dehydrogenase family K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D CLI_1355 aldolase, class II, AraD/FucA subfamily K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:cbf00051] D CLI_0487 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CLI_0157 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CLI_1355 aldolase, class II, AraD/FucA subfamily K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D CLI_3557 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CLI_2680 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D CLI_0596 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D CLI_3596 srlD; sorbitol-6-phosphate 2-dehydrogenase K00068 srlD; sorbitol-6-phosphate 2-dehydrogenase [EC:1.1.1.140] D CLI_1758 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] D CLI_3601 putative L-iditol 2-dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D CLI_2190 oxidoreductase, zinc-binding dehydrogenase family K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D CLI_0258 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CLI_0293 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D CLI_1061 dhaKL; dihydroxyacetone kinase, subunit I/II K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D CLI_0199 rpiB; ribose 5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6] D CLI_3597 PTS system, glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D CLI_3598 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D CLI_3599 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component C 00052 Galactose metabolism [PATH:cbf00052] D CLI_2829 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_2744 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_2142 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_3172 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CLI_3174 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3864 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_1683 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CLI_2750 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D CLI_3557 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CLI_2060 class II aldolase, tagatose bisphosphate family K08302 gatY-kbaY; tagatose 1,6-diphosphate aldolase GatY/KbaY [EC:4.1.2.40] D CLI_1684 glycosyl hydrolase, family 13 K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:cbf00053] D CLI_2199 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CLI_2198 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CLI_2197 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00500 Starch and sucrose metabolism [PATH:cbf00500] D CLI_1444 phosphotransferase system domain protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CLI_1684 glycosyl hydrolase, family 13 K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D CLI_3172 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CLI_3532 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CLI_3533 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CLI_3535 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component D CLI_3536 glycosyl hydrolase, family 4 K01222 E3.2.1.86A; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CLI_0963 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CLI_1285 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CLI_2904 glycosyl hydrolase, family 1 K01223 E3.2.1.86B; 6-phospho-beta-glucosidase [EC:3.2.1.86] D CLI_0344 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0363 PTS system, glucose/maltose-specific, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0352 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0341 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_0361 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_1685 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D CLI_0350 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-] D CLI_1686 endonuclease/exonuclease/phosphatase family protein K06896 mapP; maltose 6'-phosphate phosphatase [EC:3.1.3.90] D CLI_0351 glvA-2; maltose-6'-phosphate glucosidase K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122] D CLI_0362 glvA-3; maltose-6'-phosphate glucosidase K01232 glvA; maltose-6'-phosphate glucosidase [EC:3.2.1.122] D CLI_2053 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CLI_2054 treC; alpha,alpha-phosphotrehalase K01226 treC; trehalose-6-phosphate hydrolase [EC:3.2.1.93] D CLI_3174 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3864 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_1683 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CLI_3449 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cbf00520] D CLI_2882 glycosyl hydrolase, family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D CLI_1149 extracellular exochitinase K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D CLI_1172 putative glycosyl hydrolase K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D CLI_0818 glycosyl hydrolase, family 18 K01183 E3.2.1.14; chitinase [EC:3.2.1.14] D CLI_0344 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0363 PTS system, glucose/maltose-specific, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0352 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_2891 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CLI_2884 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D CLI_2883 nagB; glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6] D CLI_3593 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CLI_3603 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D CLI_3765 glmU; UDP-N-acetylglucosamine diphosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CLI_1443 glucokinase regulator family protein K07106 murQ; N-acetylmuramic acid 6-phosphate etherase [EC:4.2.1.126] D CLI_3787 murA-2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CLI_0214 murA-1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CLI_3562 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CLI_2777 putative UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CLI_0203 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CLI_3167 UDP-glucose/GDP-mannose dehydrogenase family K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D CLI_3166 oxidoreductase, NAD-binding Rossmann fold family K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D CLI_0916 putative pleiotropic regulatory protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D CLI_3159 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23] D CLI_0341 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_0361 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_1421 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CLI_2804 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CLI_1683 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CLI_3174 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3864 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3172 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CLI_2829 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_2744 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_2142 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_2750 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D CLI_3449 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CLI_0487 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CLI_0157 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CLI_2769 aminotransferase, DegT/DnrJ/EryC1/StrS family K13010 per; perosamine synthetase [EC:2.6.1.102] C 00620 Pyruvate metabolism [PATH:cbf00620] D CLI_1276 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CLI_2810 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CLI_3605 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D CLI_1710 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_3354 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CLI_2151 eutE; acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D CLI_0416 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CLI_2516 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CLI_2517 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CLI_3556 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CLI_3819 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CLI_3823 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CLI_3821 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CLI_3820 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_1091 putative glycolate oxidase K26113 lctD; lactate dehydrogenase (NAD+,ferredoxin) subunit LctD [EC:1.1.1.436] D CLI_1090 electron transfer flavoprotein, alpha subunit/FixB family protein K26114 lctC; lactate dehydrogenase (NAD+,ferredoxin) subunit LctC D CLI_1089 electron transfer flavoprotein, beta subunit/FixA family protein K26115 lctB; lactate dehydrogenase (NAD+,ferredoxin) subunit LctB D CLI_1599 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CLI_3453 ldhA-1; D-lactate dehydrogenase K03778 ldhA; D-lactate dehydrogenase [EC:1.1.1.28] D CLI_1068 oxidoreductase, aldo/keto reductase family K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] D CLI_2228 glyoxalase family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D CLI_1610 glyoxalase family protein K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D CLI_3116 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D CLI_1088 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1] D CLI_2085 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1] D CLI_1809 conserved hypothetical protein K22373 larA; lactate racemase [EC:5.1.2.1] D CLI_0275 malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D CLI_0318 malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D CLI_3482 pyc; pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D CLI_3624 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha region K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2] D CLI_3623 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta region K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2] D CLI_2994 ppdK; pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cbf00630] D CLI_0503 aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CLI_3785 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CLI_2658 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CLI_0767 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D CLI_0768 glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D CLI_0765 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0766 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D CLI_2283 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CLI_0365 eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D CLI_0942 oxdD; oxalate decarboxylase K01569 oxdD; oxalate decarboxylase [EC:4.1.1.2] C 00640 Propanoate metabolism [PATH:cbf00640] D CLI_2516 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CLI_2517 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_3354 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CLI_3338 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CLI_3819 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CLI_3823 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CLI_3821 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CLI_3820 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CLI_1599 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CLI_2065 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D CLI_1062 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D CLI_1068 oxidoreductase, aldo/keto reductase family K23257 yvgN; methylglyoxal/glyoxal reductase [EC:1.1.1.283 1.1.1.-] C 00650 Butanoate metabolism [PATH:cbf00650] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CLI_3340 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CLI_3341 crt; 3-hydroxybutyryl-CoA dehydratase K01715 crt; enoyl-CoA hydratase [EC:4.2.1.17] D CLI_3338 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CLI_2897 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D CLI_2898 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D CLI_3608 buk-1; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7] D CLI_3610 buk-2; butyrate kinase K00929 buk; butyrate kinase [EC:2.7.2.7] D CLI_3609 ptb; phosphate butyryltransferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D CLI_3178 phosphate acetyl/butyryl transferase K00634 ptb; phosphate butyryltransferase [EC:2.3.1.19] D CLI_2151 eutE; acetaldehyde dehydrogenase (acetylating) K00132 E1.2.1.10; acetaldehyde dehydrogenase (acetylating) [EC:1.2.1.10] D CLI_0416 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CLI_1505 NADH-dependent butanol dehydrogenase K00100 bdhAB; butanol dehydrogenase [EC:1.1.1.-] D CLI_1981 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CLI_3354 pfl; formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54] D CLI_1276 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CLI_2810 pyruvate ferredoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-] D CLI_3605 putative 2-oxoacid:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11] D CLI_2960 adh; NADP-dependent alcohol dehydrogenase K23259 adh; isopropanol dehydrogenase (NADP+) [EC:1.1.1.80] D CLI_2266 oxidoreductase, zinc-binding dehydrogenase family K00004 BDH; (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.4 1.1.1.- 1.1.1.303] C 00660 C5-Branched dibasic acid metabolism C 00562 Inositol phosphate metabolism [PATH:cbf00562] D CLI_2699 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D CLI_0293 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:cbf00190] D CLI_1851 putative Fe] hydrogenase, electron-transfer subunit K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D CLI_1850 putative iron hydrogenase, electron-transfer subunit K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D CLI_1849 iron hydrogenase 1 K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D CLI_0209 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CLI_0211 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CLI_0210 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CLI_0208 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CLI_0212 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CLI_0205 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CLI_0207 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CLI_0206 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CLI_2690 V-type ATPase, A subunit K02117 ATPVA; V/A-type H+/Na+-transporting ATPase subunit A [EC:7.1.2.2 7.2.2.1] D CLI_2689 V-type ATPase, B subunit K02118 ATPVB; V/A-type H+/Na+-transporting ATPase subunit B D CLI_2692 V-type ATPase, C subunit K02119 ATPVC; V/A-type H+/Na+-transporting ATPase subunit C D CLI_2688 V-type ATPase, D subunit K02120 ATPVD; V/A-type H+/Na+-transporting ATPase subunit D D CLI_2693 V-type ATPase, E subunit K02121 ATPVE; V/A-type H+/Na+-transporting ATPase subunit E D CLI_2691 V-type ATPase, G subunit K02122 ATPVF; V/A-type H+/Na+-transporting ATPase subunit F D CLI_2696 putative V-type ATPase, G subunit K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D CLI_2322 hypothetical protein K02107 ATPVG; V/A-type H+/Na+-transporting ATPase subunit G/H D CLI_2695 V-type ATPase, I subunit K02123 ATPVI; V/A-type H+/Na+-transporting ATPase subunit I D CLI_2694 V-type ATPase, K subunit K02124 ATPVK; V/A-type H+/Na+-transporting ATPase subunit K D CLI_2702 putative manganese-dependent inorganic pyrophosphatase K15986 ppaC; manganese-dependent inorganic pyrophosphatase [EC:3.6.1.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:cbf00680] D CLI_2267 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D CLI_1426 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D CLI_1427 nitrate reductase, iron-sulfur subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit D CLI_2658 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CLI_0295 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CLI_1061 dhaKL; dihydroxyacetone kinase, subunit I/II K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D CLI_0258 fba; fructose-1,6-bisphosphate aldolase, class II K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D CLI_2680 glpX; fructose-1,6-bisphosphatase, class II K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11] D CLI_0596 fructose-1,6-bisphosphatase K04041 fbp3; fructose-1,6-bisphosphatase III [EC:3.1.3.11] D CLI_3557 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CLI_2516 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D CLI_2517 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CLI_0294 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CLI_1213 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CLI_1577 mtbC; dimethylamine corrinoid protein K16179 mtbC; dimethylamine corrinoid protein D CLI_3775 putative 2-phosphosulfolactate phosphatase K05979 comB; 2-phosphosulfolactate phosphatase [EC:3.1.3.71] C 00910 Nitrogen metabolism [PATH:cbf00910] D CLI_0759 nifH; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH D CLI_2842 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1] D CLI_3831 oxidoreductase, 2-nitropropane dioxygenase family K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D CLI_1806 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D CLI_3785 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CLI_3474 gltA-2; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CLI_1722 gltA-1; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CLI_2657 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D CLI_1565 hypothetical protein K01673 cynT; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:cbf00920] D CLI_2472 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] D CLI_1047 asrA; anaerobic sulfite reductase, subunit A K16950 asrA; anaerobic sulfite reductase subunit A D CLI_1048 asrB; anaerobic sulfite reductase, subunit B K16951 asrB; anaerobic sulfite reductase subunit B D CLI_1049 arsC; anaerobic sulfite reductase, subunit C K00385 asrC; anaerobic sulfite reductase subunit C D CLI_0878 sulfurtransferase family protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CLI_2679 putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CLI_0271 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CLI_0813 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D CLI_0270 cysK-1; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CLI_1261 cysK-2; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CLI_1938 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:cbf00061] D CLI_3819 accA; acetyl-CoA carboxylase, carboxyl transferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D CLI_3823 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D CLI_3821 accC; acetyl-CoA carboxylase, biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D CLI_3820 accD; acetyl-CoA carboxylase, carboxyl transferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D CLI_2512 acpP-1; acyl carrier protein K02078 acpP; acyl carrier protein D CLI_3828 acyl carrier protein homolog K02078 acpP; acyl carrier protein D CLI_3826 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CLI_3829 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CLI_0806 putative 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CLI_3824 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CLI_0582 fabG-1; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CLI_3825 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CLI_3822 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CLI_3827 oxidoreductase, 2-nitropropane dioxygenase family K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:cbf00071] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CLI_3338 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CLI_0416 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis [PATH:cbf00121] D CLI_2250 linear amide C-N hydrolase, choloylglycine hydrolase family K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:cbf00561] D CLI_2283 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_1061 dhaKL; dihydroxyacetone kinase, subunit I/II K00863 DAK; triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) [EC:2.7.1.28 2.7.1.29 4.6.1.15] D CLI_2065 glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D CLI_1062 dhaD; glycerol dehydrogenase K00005 gldA; glycerol dehydrogenase [EC:1.1.1.6] D CLI_2834 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CLI_2513 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CLI_0501 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CLI_0273 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CLI_3000 diacylglycerol kinase/PAP2 family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D CLI_0941 triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D CLI_2121 triacylglycerol lipase K01046 lip; triacylglycerol lipase [EC:3.1.1.3] D CLI_0182 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CLI_2917 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D CLI_0674 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] C 00564 Glycerophospholipid metabolism [PATH:cbf00564] D CLI_2581 NAD-dependent glycerol-3-phosphate dehydrogenase family protein K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D CLI_2294 oxidoreductase, FAD/[2Fe-2S]-binding K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D CLI_1159 FAD-dependent oxidoreductase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D CLI_0501 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CLI_0273 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CLI_3000 diacylglycerol kinase/PAP2 family protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D CLI_2699 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D CLI_2982 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CLI_1274 glycerophosphoryl diester phosphodiesterase family protein K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CLI_3350 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D CLI_2486 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D CLI_0263 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CLI_0038 psd; phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D CLI_1105 CDP-alcohol phosphatidyltransferase family protein K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D CLI_2461 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 pgsA; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] D CLI_2739 cls; cardiolipin synthetase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] C 00565 Ether lipid metabolism D CLI_2699 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] C 00600 Sphingolipid metabolism [PATH:cbf00600] D CLI_1283 O-glycosyl hydrolase, family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45] C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids D CLI_2955 lipase/acylhydrolase, GDSL family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:cbf00230] D CLI_1871 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CLI_0558 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CLI_3174 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3864 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3764 prsA-2; ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D CLI_2934 purF-1; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CLI_2968 purF-2; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CLI_2930 purD; phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D CLI_2932 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CLI_2643 phosphoribosylformylglycinamidine synthase K01952 PFAS; phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] D CLI_2933 purM; phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D CLI_2936 purE; phosphoribosylaminoimidazole carboxylase, catalytic subunit K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D CLI_2935 purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D CLI_2451 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CLI_2931 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CLI_3119 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CLI_2072 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CLI_0298 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D CLI_1866 punA; purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CLI_3320 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D CLI_2591 conserved hypothetical protein TIGR00726 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CLI_3140 hpt-1; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D CLI_3734 hpt-2; hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D CLI_3466 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CLI_3432 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D CLI_0387 xpt-1; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D CLI_1225 xpt-2; xanthine phosphoribosyltransferase K03816 xpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D CLI_1370 xanthine dehydrogenase family protein, molybdopterin-binding subunit K00087 ygeS; xanthine dehydrogenase molybdenum-binding subunit [EC:1.17.1.4] D CLI_1371 xanthine dehydrogenase family protein, FAD-binding subunit K13479 ygeT; xanthine dehydrogenase FAD-binding subunit [EC:1.17.1.4] D CLI_1372 xanthine dehydrogenase family protein, iron-sulfur binding subunit K13480 ygeU; xanthine dehydrogenase iron-sulfur-binding subunit D CLI_3465 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CLI_1373 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D CLI_2575 gmk; guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D CLI_2864 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CLI_2863 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CLI_0149 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CLI_2992 deoxynucleotide triphosphohydrolase family protein K01129 dgt; dGTPase [EC:3.1.5.1] D CLI_3118 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CLI_0247 RelA/SpoT domain protein K07816 E2.7.6.5; GTP pyrophosphokinase [EC:2.7.6.5] D CLI_0256 putative adenylyl cyclase CyaB K05873 cyaB; adenylate cyclase, class 2 [EC:4.6.1.1] D CLI_3861 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CLI_1072 add; adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4] D CLI_0367 ade; adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D CLI_3642 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CLI_2950 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D CLI_2657 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] C 00240 Pyrimidine metabolism [PATH:cbf00240] D CLI_1839 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CLI_1840 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CLI_3380 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CLI_3379 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D CLI_3378 pyrC; dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3] D CLI_3375 pyrD; dihydroorotate oxidase K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D CLI_3376 pyrK; dihydroorotate dehydrogenase, electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D CLI_3374 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D CLI_3377 pyrF; orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D CLI_2489 pyrH; UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D CLI_3058 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D CLI_0187 pyrG; CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D CLI_1803 cmk; cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D CLI_2617 udk; uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D CLI_0261 putative threonyl-tRNA synthetase/uridine kinase K00876 udk; uridine kinase [EC:2.7.1.48] D CLI_0298 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D CLI_3320 conserved hypothetical protein K09913 ppnP; purine/pyrimidine-nucleoside phosphorylase [EC:2.4.2.1 2.4.2.2] D CLI_0200 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D CLI_1561 pyrR-1; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CLI_2870 pyrR-2; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CLI_1250 kinase, PfkB family K16328 psuK; pseudouridine kinase [EC:2.7.1.83] D CLI_1251 indigoidine synthase A family protein K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D CLI_1865 pdp; pyrimidine-nucleoside phosphorylase K00756 pdp; pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] D CLI_2999 cdd; cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D CLI_0326 cytidine/deoxycytidylate deaminase family protein K01489 cdd; cytidine deaminase [EC:3.5.4.5] D CLI_2125 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D CLI_0149 nrdD; anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6] D CLI_2864 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CLI_2863 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CLI_0201 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D CLI_0111 putative thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D CLI_1320 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CLI_0191 tdk; thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21] D CLI_0854 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D CLI_3686 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D CLI_2869 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D CLI_2868 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D CLI_2942 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D CLI_0709 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:cbf00250] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D CLI_1532 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CLI_2578 ansA; L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D CLI_1585 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D CLI_1816 hydrolase, carbon-nitrogen family K13566 NIT2; omega-amidase [EC:3.5.1.3] D CLI_1247 aspD; aspartate 4-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12] D CLI_2736 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CLI_2735 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CLI_3861 purA; adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D CLI_2451 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D CLI_3380 pyrB; aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D CLI_3379 pyrI; aspartate carbamoyltransferase, regulatory subunit K00610 pyrI; aspartate carbamoyltransferase regulatory subunit D CLI_1981 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CLI_3474 gltA-2; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CLI_1722 gltA-1; glutamate synthase (NADPH), homotetrameric K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D CLI_1806 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D CLI_3785 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CLI_1839 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CLI_1840 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CLI_2858 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CLI_3593 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CLI_2934 purF-1; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CLI_2968 purF-2; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:cbf00260] D CLI_1717 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_3510 lysC; aspartokinase II K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_2465 dapG; aspartokinase I K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_3216 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CLI_1939 homoserine dehydrogenase family protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CLI_1718 hom-1; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CLI_1716 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39] D CLI_1715 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D CLI_2282 putative low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D CLI_2658 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CLI_2283 glxK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165] D CLI_0294 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12] D CLI_1213 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CLI_1280 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4] D CLI_0767 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D CLI_0768 glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D CLI_0765 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0766 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein D CLI_0263 pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D CLI_1297 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CLI_1298 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CLI_3689 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] C 00270 Cysteine and methionine metabolism [PATH:cbf00270] D CLI_0271 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D CLI_0813 cysteine synthase family protein K01738 cysK; cysteine synthase [EC:2.5.1.47] D CLI_0270 cysK-1; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CLI_1261 cysK-2; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D CLI_0815 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CLI_1497 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CLI_2030 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CLI_1701 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CLI_0231 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D CLI_3539 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D CLI_1555 mtnN; MTA/SAH nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D CLI_1352 mtnK; S-methyl-5-thioribose kinase K00899 mtnK; 5-methylthioribose kinase [EC:2.7.1.100] D CLI_2591 conserved hypothetical protein TIGR00726 K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D CLI_1353 mtnA; S-methyl-5-thioribose-1-phosphate isomerase K08963 mtnA; methylthioribose-1-phosphate isomerase [EC:5.3.1.23] D CLI_0043 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D CLI_2964 conserved hypothetical protein K08968 msrC; L-methionine (R)-S-oxide reductase [EC:1.8.4.14] D CLI_3290 conserved domain protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2433 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2130 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_0814 luxS; autoinducer-2 production protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D CLI_1717 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_3510 lysC; aspartokinase II K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_2465 dapG; aspartokinase I K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_3216 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CLI_1939 homoserine dehydrogenase family protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CLI_1718 hom-1; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CLI_1938 metA; homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31] D CLI_1940 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D CLI_2806 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D CLI_0878 sulfurtransferase family protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CLI_2679 putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CLI_1599 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CLI_1247 aspD; aspartate 4-decarboxylase K09758 asdA; aspartate 4-decarboxylase [EC:4.1.1.12] D CLI_1297 sdhB; L-serine dehydratase, iron-sulfur-dependent, beta subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CLI_1298 sdhA; L-serine dehydratase, iron-sulfur-dependent, alpha subunit K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17] D CLI_1213 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] C 00280 Valine, leucine and isoleucine degradation [PATH:cbf00280] D CLI_2806 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_3338 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cbf00290] D CLI_3689 ilvA; threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D CLI_0364 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D CLI_2806 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] C 00300 Lysine biosynthesis [PATH:cbf00300] D CLI_1939 homoserine dehydrogenase family protein K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CLI_1718 hom-1; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D CLI_1717 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_3510 lysC; aspartokinase II K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_2465 dapG; aspartokinase I K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_3216 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CLI_3217 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CLI_0877 dapB_1; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CLI_3218 dapB_2; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CLI_3220 putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D CLI_3516 putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D CLI_1976 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CLI_3509 lysA; diaminopimelate decarboxilase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D CLI_1797 aminotransferase, classes I and II K05825 LYSN; 2-aminoadipate transaminase [EC:2.6.1.-] D CLI_1541 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CLI_1542 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:cbf00310] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CLI_2897 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D CLI_2898 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:cbf00220] D CLI_2656 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D CLI_2736 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CLI_2735 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CLI_1668 arcA-2; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D CLI_0122 arcA-1; arginine deiminase K01478 arcA; arginine deiminase [EC:3.5.3.6] D CLI_2858 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CLI_3785 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CLI_1839 carB; carbamoyl-phosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D CLI_1840 carA; carbamoyl-phosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D CLI_2657 arcC; carbamate kinase K00926 arcC; carbamate kinase [EC:2.7.2.2] D CLI_1806 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] C 00330 Arginine and proline metabolism [PATH:cbf00330] D CLI_2125 codA; cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D CLI_3176 Orn/Lys/Arg decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19] D CLI_0979 peptidyl-arginine deiminase, Porphyromonas-type K10536 aguA; agmatine deiminase [EC:3.5.3.12] D CLI_3539 speD; S-adenosylmethionine decarboxylase K01611 speD; S-adenosylmethionine decarboxylase [EC:4.1.1.50] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_1999 bltD; spermine/spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D CLI_1256 putative diamine N-acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D CLI_1280 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4] D CLI_3321 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D CLI_2096 pepIP; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D CLI_3322 formate acetyltransferase K23121 pflD; trans-4-hydroxy-L-proline dehydratase [EC:4.2.1.172] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D CLI_2533 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4] D CLI_2522 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1] D CLI_2539 putative D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1] D CLI_3802 glycine/sarcosine/betaine reductase, component B, subunits alpha and beta K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1] D CLI_2520 putative D-proline reductase, PrdB subunit, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1] D CLI_2537 prdB-1; D-proline reductase, PrdB subunit, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1] D CLI_3800 prdB-2; D-proline reductase, PrdB subunit K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1] C 00340 Histidine metabolism [PATH:cbf00340] D CLI_1648 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D CLI_1647 hisZ; ATP phosphoribosyltransferase, regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D CLI_1652 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D CLI_1651 hisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D CLI_1654 hisF; imidazoleglycerol phosphate synthase, cyclase subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D CLI_1650 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D CLI_1653 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CLI_2634 hisK; histidinol-phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15] D CLI_1649 hisD; histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_1280 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4] C 00350 Tyrosine metabolism [PATH:cbf00350] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D CLI_1653 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CLI_1280 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4] D CLI_0416 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CLI_3454 ldhA-2; D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110] C 00360 Phenylalanine metabolism [PATH:cbf00360] D CLI_1280 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4] D CLI_3340 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D CLI_1653 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CLI_3229 acetyltransferase, GNAT family K03825 aaaT; L-phenylalanine/L-methionine N-acetyltransferase [EC:2.3.1.53 2.3.1.-] D CLI_3454 ldhA-2; D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110] D CLI_2212 enr; 2-enoate reductase K10797 enr; 2-enoate reductase [EC:1.3.1.31] C 00380 Tryptophan metabolism [PATH:cbf00380] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CLI_1280 amine oxidase, flavin-containing K00274 MAO; monoamine oxidase [EC:1.4.3.4] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_3454 ldhA-2; D-lactate dehydrogenase K23109 fldH; aromatic 2-oxoacid reductase [EC:1.1.1.110] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cbf00400] D CLI_1556 aroF; 3-deoxy-7-phosphoheptulonate synthase K03856 AROA2; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D CLI_2192 putative 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D CLI_1554 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4] D CLI_1962 aroQ; 3-dehydroquinate dehydratase, type II K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D CLI_1963 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D CLI_1557 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D CLI_3069 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D CLI_1804 aroH; chorismate mutase K06208 aroH; chorismate mutase [EC:5.4.99.5] D CLI_3063 pheB; ACT domain protein pheB K06209 pheB; chorismate mutase [EC:5.4.99.5] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D CLI_1653 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:cbf00410] D CLI_0508 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D CLI_1981 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_0509 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D CLI_2869 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D CLI_2868 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D CLI_2942 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D CLI_0709 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D CLI_3338 bcd; butyryl-CoA dehydrogenase K00248 ACADS; butyryl-CoA dehydrogenase [EC:1.3.8.1] C 00430 Taurine and hypotaurine metabolism [PATH:cbf00430] D CLI_1981 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CLI_1806 gluD; glutamate dehydrogenase, NAD-specific K00260 gudB; glutamate dehydrogenase [EC:1.4.1.2] D CLI_2517 pta; phosphate acetyltransferase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D CLI_2516 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:cbf00440] D CLI_0732 PHP domain protein K20859 phnPP; phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase [EC:3.1.4.57] C 00450 Selenocompound metabolism [PATH:cbf00450] D CLI_0815 metC; cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CLI_1497 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CLI_2030 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CLI_1701 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CLI_0043 megL; methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D CLI_1340 putative thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CLI_1344 trxB; thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CLI_3615 oxidoreductase, pyridine nucleotide-disulphide family K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D CLI_2940 putative selenate reductase, YgfK subunit K12527 ygfK; putative selenate reductase [EC:1.97.1.9] D CLI_3030 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D CLI_0132 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:cbf00460] D CLI_2578 ansA; L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1] D CLI_1585 asnA; aspartate--ammonia ligase K01914 asnA; aspartate--ammonia ligase [EC:6.3.1.1] D CLI_2658 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:cbf00470] D CLI_1734 alr-1; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CLI_3582 alr-2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CLI_0538 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CLI_2858 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CLI_3784 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CLI_3724 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CLI_1976 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D CLI_3509 lysA; diaminopimelate decarboxilase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D CLI_2040 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12] D CLI_2069 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12] D CLI_2533 proline racemase K01777 prdF; proline racemase [EC:5.1.1.4] D CLI_2522 prdA; D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1] D CLI_2539 putative D-proline reductase, PrdA proprotein K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1] D CLI_3802 glycine/sarcosine/betaine reductase, component B, subunits alpha and beta K10793 prdA; D-proline reductase (dithiol) PrdA [EC:1.21.4.1] D CLI_2520 putative D-proline reductase, PrdB subunit, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1] D CLI_2537 prdB-1; D-proline reductase, PrdB subunit, selenocysteine-containing K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1] D CLI_3800 prdB-2; D-proline reductase, PrdB subunit K10794 prdB; D-proline reductase (dithiol) PrdB [EC:1.21.4.1] C 00480 Glutathione metabolism [PATH:cbf00480] D CLI_2923 pepD-3; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CLI_2281 pepD-2; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CLI_1484 pepD-1; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation D CLI_1283 O-glycosyl hydrolase, family 30 K01201 GBA; glucosylceramidase [EC:3.2.1.45] C 00540 Lipopolysaccharide biosynthesis C 00542 O-Antigen repeat unit biosynthesis [PATH:cbf00542] D CLI_0202 tagO; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cbf00541] D CLI_3172 galU; UTP-glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D CLI_2829 galE; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_2744 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_2142 NAD-dependent epimerase/dehydratase family protein K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D CLI_2750 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9] D CLI_2115 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CLI_2116 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D CLI_0487 manA; mannose-6-phosphate isomerase, class I K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8] D CLI_0157 putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] D CLI_2769 aminotransferase, DegT/DnrJ/EryC1/StrS family K13010 per; perosamine synthetase [EC:2.6.1.102] D CLI_3765 glmU; UDP-N-acetylglucosamine diphosphorylase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D CLI_2777 putative UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CLI_0203 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CLI_3167 UDP-glucose/GDP-mannose dehydrogenase family K13015 wbpA; UDP-N-acetyl-D-glucosamine dehydrogenase [EC:1.1.1.136] D CLI_3166 oxidoreductase, NAD-binding Rossmann fold family K13020 wlbA; UDP-N-acetyl-2-amino-2-deoxyglucuronate dehydrogenase [EC:1.1.1.335] D CLI_0916 putative pleiotropic regulatory protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D CLI_3159 UDP-N-acetylglucosamine 2-epimerase K13019 wbpI; UDP-GlcNAc3NAcA epimerase [EC:5.1.3.23] C 00550 Peptidoglycan biosynthesis [PATH:cbf00550] D CLI_3787 murA-2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CLI_0214 murA-1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CLI_3562 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CLI_3768 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CLI_3724 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CLI_1541 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CLI_0538 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CLI_1542 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CLI_2487 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CLI_1422 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CLI_0390 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_0489 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_0422 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_1543 mraY-2; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CLI_0965 mraY-1; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CLI_2811 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CLI_3142 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CLI_3053 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CLI_1540 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CLI_3567 penicillin-binding protein K05364 pbpA; penicillin-binding protein A D CLI_1861 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_1855 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_3033 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_1502 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_1121 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_0689 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_0486 UDP-N-acetylmuramyl tripeptide synthetase homolog K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] D CLI_0485 glutamine amidotransferase, CobB/CobQ family K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13] C 00552 Teichoic acid biosynthesis [PATH:cbf00552] D CLI_0390 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_0489 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_0422 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_0202 tagO; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D CLI_3151 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D CLI_3036 putative cell envelope-related function transcriptional attenuator K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D CLI_2755 cell envelope-related transcriptional attenuator domain protein K01005 tagT_U_V; polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase [EC:2.7.8.-] D CLI_0182 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CLI_2917 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] D CLI_0674 sulfatase family protein K19005 ltaS; lipoteichoic acid synthase [EC:2.7.8.20] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:cbf00543] D CLI_0202 tagO; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D CLI_3105 putative alginate O-acetyltransferase AlgI K19294 algI; alginate O-acetyltransferase complex protein AlgI D CLI_0271 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:cbf00730] D CLI_2967 thiC; thiamine biosynthesis protein ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D CLI_0536 thiD-1; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D CLI_0857 thiD-2; phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D CLI_2631 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_1264 iscS-1; cystathionine gamma-lyase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_3808 ThiH/BioB family protein K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19] D CLI_1945 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CLI_0535 thiM-1; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CLI_2303 thiM-2; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CLI_0534 thiE; thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D CLI_2950 conserved hypothetical protein K06928 NTPCR; nucleoside-triphosphatase [EC:3.6.1.15] D CLI_2564 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CLI_2562 thiamine diphosphokinase K00949 thiN; thiamine pyrophosphokinase [EC:2.7.6.2] D CLI_3642 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CLI_0856 putative thiaminase I K10811 E2.5.1.2; thiamine pyridinylase [EC:2.5.1.2] C 00740 Riboflavin metabolism [PATH:cbf00740] D CLI_2920 ribAB; bifunctional riboflavin biosynthesis protein RibAB K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D CLI_2922 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CLI_2975 ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase K02858 ribB; 3,4-dihydroxy 2-butanone 4-phosphate synthase [EC:4.1.99.12] D CLI_2919 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D CLI_2921 ribE; riboflavin synthase, alpha subunit K00793 ribE; riboflavin synthase [EC:2.5.1.9] D CLI_2470 ribF; riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D CLI_0535 thiM-1; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CLI_2303 thiM-2; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D CLI_1871 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] D CLI_0558 hydrolase, NUDIX family K01515 nudF; ADP-ribose diphosphatase [EC:3.6.1.13 3.6.1.-] C 00750 Vitamin B6 metabolism [PATH:cbf00750] D CLI_1486 pdxK; pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D CLI_1715 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D CLI_2850 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6] C 00760 Nicotinate and nicotinamide metabolism [PATH:cbf00760] D CLI_1532 nadB; L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D CLI_1533 nadA; quinolinate synthetase complex, A subunit K03517 nadA; quinolinate synthase [EC:2.5.1.72] D CLI_1531 nadC; nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D CLI_1508 pncB; nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D CLI_1866 punA; purine nucleoside phosphorylase I, inosine and guanosine-specific K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D CLI_0298 surE; 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D CLI_3038 nadD; nicotinate nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D CLI_0053 hydrolase, NUDIX family K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D CLI_0616 nadE; glutamine-dependent NAD(+) synthetase K01950 E6.3.5.1; NAD+ synthase (glutamine-hydrolysing) [EC:6.3.5.1] D CLI_1220 isochorismatase family protein K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D CLI_0103 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D CLI_1943 ppnK; ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] C 00770 Pantothenate and CoA biosynthesis [PATH:cbf00770] D CLI_0364 ilvD; dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D CLI_0510 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D CLI_1252 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169] D CLI_0509 panC; pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D CLI_3731 transcriptional activator, Baf family protein K03525 coaX; type III pantothenate kinase [EC:2.7.1.33] D CLI_2573 coaBC; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D CLI_2554 coaD; pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D CLI_3067 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D CLI_3585 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D CLI_2655 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D CLI_2806 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CLI_2869 pyridine nucleotide-disulphide oxidoreductase family protein K17722 preT; dihydropyrimidine dehydrogenase (NAD+) subunit PreT [EC:1.3.1.1] D CLI_2868 dihydroorotate dehydrogenase family protein K17723 preA; dihydropyrimidine dehydrogenase (NAD+) subunit PreA [EC:1.3.1.1] D CLI_2942 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D CLI_0709 amidase, hydantoinase/carbamoylase family K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D CLI_0508 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:cbf00780] D CLI_3824 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CLI_0582 fabG-1; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CLI_3825 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CLI_3822 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CLI_2308 bioD; dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D CLI_2309 bioB; biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6] D CLI_3807 radical SAM domain protein K01012 bioB; biotin synthase [EC:2.8.1.6] D CLI_1205 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:cbf00785] D CLI_1712 putative lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D CLI_0770 putative lipoate-protein ligase A K03800 lplA; lipoate---protein ligase [EC:6.3.1.20] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_1710 acoC; TPP-dependent acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D CLI_0767 gcvPA; glycine cleavage system P protein, subunit 1 K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D CLI_0768 glycine dehydrogenase (decarboxylating) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D CLI_0765 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CLI_0766 gcvH; glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:cbf00790] D CLI_1638 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D CLI_0912 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K13940 sulD; dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.2.25 2.7.6.3] D CLI_0910 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D CLI_3227 folC; FolC bifunctional protein K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D CLI_2920 ribAB; bifunctional riboflavin biosynthesis protein RibAB K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D CLI_1636 putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CLI_0909 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CLI_1637 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CLI_1639 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CLI_1154 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D CLI_2342 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D CLI_0602 metallo-beta-lactamase family protein K06897 K06897; 7,8-dihydropterin-6-yl-methyl-4-(beta-D-ribofuranosyl)aminobenzene 5'-phosphate synthase [EC:2.5.1.105] D CLI_2007 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D CLI_2006 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D CLI_2010 mog; molybdopterin biosynthesis enzyme Mog K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] D CLI_2008 molybdopterin cofactor synthesis/binding domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D CLI_2009 moeA; molybdopterin biosynthesis enzyme MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D CLI_2899 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D CLI_2947 conserved hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] C 00670 One carbon pool by folate [PATH:cbf00670] D CLI_3732 fhs; formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3] D CLI_1254 folD; methylenetetrahydrofolate dehydrogenase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D CLI_1253 fchA; methenyltetrahydrofolate cyclohydrolase K01500 fchA; methenyltetrahydrofolate cyclohydrolase [EC:3.5.4.9] D CLI_2658 glyA; glycine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D CLI_2932 purN; phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D CLI_2931 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CLI_2570 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CLI_0765 gcvT; glycine cleavage system T protein K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D CLI_1701 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D CLI_0854 thyA; thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D CLI_3686 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148] D CLI_1699 metF; methylenetetrahydrofolate reductase (NAD(P)H) K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D CLI_2670 5-formyltetrahydrofolate cyclo-ligase family protein K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:cbf00860] D CLI_1010 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CLI_1007 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D CLI_2293 uroporphyrinogen decarboxylase family protein K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D CLI_1107 conserved hypothetical protein K00230 hemG; menaquinone-dependent protoporphyrinogen oxidase [EC:1.3.5.3] D CLI_1008 cobA_hemD; uroporphyrinogen III synthase/methyltransferase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75] D CLI_1006 precorrin-2 dehydrogenase K24866 sirC; precorrin-2 dehydrogenase [EC:1.3.1.76] D CLI_1042 cbiK; anaerobic sirohydrochlorin cobaltochelatase K02190 cbiK; sirohydrochlorin cobaltochelatase [EC:4.99.1.3] D CLI_1035 cobI; precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D CLI_1038 cobJ; precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D CLI_1036 cobM; precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D CLI_1037 cbiG; cobalamin biosynthesis protein CbiG K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D CLI_1039 cobK; precorrin-6x reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D CLI_1023 cbiD; cobalamin biosynthesis protein CbiD K02188 cbiD; cobalt-precorrin-5B (C1)-methyltransferase [EC:2.1.1.195] D CLI_1026 cbiT; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit K02191 cbiT; cobalt-precorrin-6B (C15)-methyltransferase [EC:2.1.1.196] D CLI_1024 cbiE; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit K03399 cbiE; cobalt-precorrin-7 (C5)-methyltransferase [EC:2.1.1.289] D CLI_1014 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D CLI_1011 cobB; cobyrinic acid a,c-diamide synthase K02224 cobB-cbiA; cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] D CLI_1044 cobO; cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D CLI_1000 cobQ; cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D CLI_1001 cobD; cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D CLI_0996 cobU; cobinamide kinase / cobinamide phosphate guanyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D CLI_0902 cobS; cobalamin 5'-phosphate synthase K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D CLI_0900 cobC; alpha-ribazole phosphatase K02226 cobC; alpha-ribazole phosphatase [EC:3.1.3.73] D CLI_1043 putative kinase K16651 pduX; L-threonine kinase [EC:2.7.1.177] D CLI_1002 aminotransferase family protein K04720 cobD; threonine-phosphate decarboxylase [EC:4.1.1.81] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:cbf00900] D CLI_1945 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D CLI_2482 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D CLI_3691 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60] D CLI_0176 ispE; 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D CLI_0123 ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] D CLI_2480 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D CLI_1802 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1 D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CLI_1947 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D CLI_2487 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CLI_1422 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D CLI_3578 transketolase, pyridine binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D CLI_3579 transketolase, thiamine diphosphate binding subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:cbf00523] D CLI_2115 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CLI_2116 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D CLI_2116 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis C 00261 Monobactam biosynthesis [PATH:cbf00261] D CLI_1717 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_3510 lysC; aspartokinase II K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_2465 dapG; aspartokinase I K00928 lysC; aspartate kinase [EC:2.7.2.4] D CLI_3216 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D CLI_3217 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D CLI_0877 dapB_1; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D CLI_3218 dapB_2; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:cbf00521] D CLI_1683 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] D CLI_3174 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_3864 phosphoglucomutase/phosphomannomutase family protein K01835 pgm; phosphoglucomutase [EC:5.4.2.2] D CLI_2115 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CLI_2116 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D CLI_1683 putative glucokinase K25026 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:cbf00525] D CLI_2115 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D CLI_2116 rfbB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:cbf00401] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D CLI_1653 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis D CLI_2226 phenazine biosynthesis protein, PhzF family K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] C 00333 Prodigiosin biosynthesis D CLI_3826 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CLI_0582 fabG-1; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CLI_3825 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D CLI_2512 acpP-1; acyl carrier protein K02078 acpP; acyl carrier protein D CLI_3828 acyl carrier protein homolog K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites D CLI_0231 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] C 00997 Biosynthesis of various other secondary metabolites D CLI_2040 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12] D CLI_2069 alanine racemase, N-terminal domain protein K21898 orr; ornithine racemase [EC:5.1.1.12] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:cbf00362] D CLI_3340 hbd; 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation D CLI_2897 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D CLI_2898 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] C 00364 Fluorobenzoate degradation C 00625 Chloroalkane and chloroalkene degradation [PATH:cbf00625] D CLI_0416 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] D CLI_1188 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D CLI_0759 nifH; nitrogenase iron protein K02588 nifH; nitrogenase iron protein NifH D CLI_1108 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation D CLI_1108 HAD superfamily (subfamily IA) hydrolase, TIGR02254 K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00623 Toluene degradation C 00622 Xylene degradation C 00633 Nitrotoluene degradation [PATH:cbf00633] D CLI_1835 hupL; [Ni/Fe] hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D CLI_1836 hupS; [Ni/Fe] hydrogenase, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D CLI_2267 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D CLI_1426 carbon monoxide dehydrogenase K00198 cooS; anaerobic carbon-monoxide dehydrogenase catalytic subunit [EC:1.2.7.4] D CLI_1427 nitrate reductase, iron-sulfur subunit K00196 cooF; anaerobic carbon-monoxide dehydrogenase iron sulfur subunit C 00642 Ethylbenzene degradation C 00643 Styrene degradation C 00791 Atrazine degradation C 00930 Caprolactam degradation C 00363 Bisphenol degradation C 00621 Dioxin degradation C 00626 Naphthalene degradation [PATH:cbf00626] D CLI_0416 adhE; aldehyde-alcohol dehydrogenase K04072 adhE; acetaldehyde dehydrogenase / alcohol dehydrogenase [EC:1.2.1.10 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:cbf03020] D CLI_3671 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CLI_3670 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CLI_3634 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CLI_2574 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors D CLI_0592 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:cbf03010] D CLI_1240 putative 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CLI_1802 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1 D CLI_2491 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CLI_3657 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CLI_3590 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CLI_3635 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CLI_3646 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CLI_3873 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CLI_3667 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CLI_3649 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CLI_3627 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CLI_3664 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CLI_3636 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CLI_3668 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CLI_3637 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CLI_3650 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D CLI_2469 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CLI_2504 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CLI_3654 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CLI_3871 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CLI_3659 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CLI_3020 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CLI_3006 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CLI_3674 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CLI_3660 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CLI_3663 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CLI_3662 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CLI_3651 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CLI_3648 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CLI_3672 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CLI_3867 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CLI_3673 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CLI_3675 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CLI_3628 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CLI_3653 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CLI_3644 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CLI_3656 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CLI_3633 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CLI_3647 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CLI_2500 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CLI_3193 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CLI_3043 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CLI_3658 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CLI_3661 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CLI_3652 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CLI_3356 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D CLI_3175 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D CLI_3041 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CLI_2559 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CLI_3655 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CLI_3645 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CLI_0190 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CLI_2514 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CLI_3678 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CLI_3893 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CLI_3194 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CLI_3638 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CLI_3669 ribosomal protein L7Ae family protein K07590 RP-L7A; large subunit ribosomal protein L7A D CLI_3711 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_3722 rrsI; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0077 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0490 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0068 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0089 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0060 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0009 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0098 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0012 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0071 rrlI-1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0063 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0101 rrlH-1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0092 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0496 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_3719 rrlI-2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_3707 rrlH-2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0080 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0013 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0072 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0081 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_3718 rrfI; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_3706 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0064 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0497 rrfG; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0102 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0093 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:cbf00970] D CLI_0492 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CLI_0018 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CLI_3713 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CLI_0037 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3401 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3414 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3426 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_0041 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3396 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3704 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CLI_0499 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CLI_3702 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CLI_3205 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CLI_3851 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CLI_3951 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CLI_3948 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CLI_0104 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CLI_3201 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CLI_0251 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CLI_3409 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CLI_3422 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CLI_3855 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CLI_3848 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CLI_0562 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CLI_3950 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CLI_3202 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3404 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3417 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3397 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3403 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3416 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3428 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3681 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3411 tRNA-His K14226 tRNA-His; tRNA His D CLI_3424 tRNA-His K14226 tRNA-His; tRNA His D CLI_0493 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CLI_3710 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CLI_3741 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3747 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3405 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3418 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3103 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3065 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3413 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_3400 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_0066 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_3420 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_3407 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_0074 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_0016 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3737 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3743 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3739 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3740 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3745 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3946 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3203 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CLI_3896 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CLI_3895 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CLI_3398 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CLI_3429 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CLI_3771 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CLI_0030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_0035 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_0033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_0028 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_0046 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_3680 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_3897 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_0227 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_3850 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_3947 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_3487 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CLI_0229 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CLI_3898 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CLI_3207 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_3853 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_3846 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_0226 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_3949 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_3027 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D CLI_1183 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D CLI_3437 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D CLI_3436 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D CLI_3438 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D CLI_2627 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CLI_3113 aspS-2; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CLI_1101 aspS-1; aspartate--tRNA ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D CLI_0677 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CLI_3726 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CLI_3196 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CLI_0591 serS-2; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CLI_0026 serS-1; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CLI_3030 selA; L-seryl-tRNA selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] D CLI_3688 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CLI_0132 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CLI_2570 fmt; methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D CLI_3228 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CLI_0249 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CLI_0154 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CLI_3727 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CLI_1163 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CLI_3517 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CLI_3690 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CLI_3114 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CLI_3189 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CLI_3188 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CLI_3496 tyrS-2; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CLI_1287 tyrS-1; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CLI_3504 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:cbf03060] D CLI_3643 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CLI_3677 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CLI_0296 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CLI_3122 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CLI_3121 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CLI_3126 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CLI_3890 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D CLI_0236 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CLI_2505 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CLI_3894 srpB; bacterial signal recognition particle RNA K01983 ffs; SRP RNA D CLI_2507 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CLI_0835 arsA; arsenical pump-driving ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D CLI_0654 lepB-1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CLI_2499 lepB-2; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CLI_1559 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:cbf04122] D CLI_2631 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_1264 iscS-1; cystathionine gamma-lyase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_0878 sulfurtransferase family protein K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CLI_2679 putative thiosulfate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D CLI_1267 trmU-1; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CLI_2962 trmU-2; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CLI_2007 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D CLI_1227 putative thiosulfate sulfurtransferase K21028 ynjE; molybdopterin synthase sulfurtransferase [EC:2.8.1.11] D CLI_2006 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D CLI_2010 mog; molybdopterin biosynthesis enzyme Mog K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75] C 03050 Proteasome C 03018 RNA degradation [PATH:cbf03018] D CLI_0295 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CLI_2468 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CLI_0719 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CLI_0297 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CLI_2852 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_1775 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_2077 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_1773 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_1077 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CLI_0189 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CLI_2459 HDIG/HD/KH domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D CLI_2622 RNA-metabolizing metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D CLI_1379 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D CLI_3557 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CLI_3012 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CLI_3468 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CLI_1792 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein B B 09124 Replication and repair C 03030 DNA replication [PATH:cbf03030] D CLI_0329 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CLI_3558 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CLI_2479 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CLI_0047 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CLI_0113 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CLI_3021 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CLI_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CLI_3865 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CLI_2991 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CLI_3872 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CLI_0468 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein D CLI_0477 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CLI_2497 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CLI_3068 polA-2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CLI_3441 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:cbf03410] D CLI_3473 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D CLI_0274 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CLI_1349 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D CLI_0716 conserved domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D CLI_0737 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D CLI_0067 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D CLI_0130 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D CLI_1563 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CLI_2815 AP endonuclease, family 2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D CLI_3068 polA-2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CLI_2814 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CLI_3441 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:cbf03420] D CLI_3759 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CLI_3570 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D CLI_3571 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D CLI_3564 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D CLI_3343 GIY-YIG domain protein K03703 uvrC; excinuclease ABC subunit C D CLI_1414 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_3442 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_3514 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_1512 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_2959 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_3068 polA-2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CLI_3441 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CLI_0592 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] C 03430 Mismatch repair [PATH:cbf03430] D CLI_1795 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CLI_3181 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D CLI_0710 MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D CLI_1794 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D CLI_1414 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_3442 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_3514 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_1512 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_2959 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_1949 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CLI_1948 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CLI_2814 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CLI_3872 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CLI_0468 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein D CLI_3558 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CLI_2479 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CLI_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CLI_0047 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CLI_3021 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CLI_0113 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CLI_0329 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CLI_3441 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:cbf03440] D CLI_2814 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CLI_3872 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CLI_0468 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein D CLI_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D CLI_0049 recR; recombination protein RecR K06187 recR; recombination protein RecR D CLI_2460 recA; recA protein K03553 recA; recombination protein RecA D CLI_3068 polA-2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CLI_3130 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CLI_3129 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CLI_2556 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CLI_0232 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D CLI_3558 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CLI_2479 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CLI_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CLI_0047 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CLI_3021 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CLI_0113 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CLI_0329 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CLI_2572 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:cbf02010] D CLI_2013 tungstate ABC transporter, tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D CLI_2012 tupB; tungstate ABC transporter, permease protein K05773 tupB; tungstate transport system permease protein D CLI_2011 tupC; tungstate ABC transporter, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D CLI_1566 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D CLI_1567 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D CLI_1568 putative molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D CLI_1235 ABC transporter, substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CLI_1236 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein D CLI_1237 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CLI_0642 putative spermidine/putrescine ABC transporter, permease protein/spermidine/putrescine-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D CLI_0641 potB; spermidine/putrescine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein D CLI_0640 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D CLI_1714 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D CLI_1713 glycine betaine/L-proline ABC transporter, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D CLI_1595 carbohydrate uptake ABC transporter, CUT1 family, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D CLI_0284 lipoprotein, bmp family K07335 bmpA; basic membrane protein A and related proteins D CLI_0286 putative sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D CLI_0287 putative sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D CLI_0285 putative sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D CLI_2588 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CLI_0459 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CLI_0460 phosphate uptake ABC transporter, PhoT family, permease protein K02037 pstC; phosphate transport system permease protein D CLI_2587 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D CLI_0461 phosphate uptake ABC transporter, PhoT family, permease protein K02038 pstA; phosphate transport system permease protein D CLI_2586 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CLI_2585 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CLI_0462 phosphate uptake ABC transporter, PhoT family, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CLI_1263 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein D CLI_1498 amino acid ABC transporter, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein D CLI_1262 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein D CLI_1499 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein D CLI_1500 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein D CLI_2084 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D CLI_2083 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein D CLI_2082 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D CLI_0539 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CLI_0540 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein D CLI_0541 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D CLI_0542 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CLI_0543 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D CLI_1176 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein D CLI_1177 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein D CLI_1582 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein D CLI_1175 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein D CLI_1581 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein D CLI_1174 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D CLI_1580 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D CLI_3215 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CLI_3435 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D CLI_3214 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein D CLI_3213 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein D CLI_3212 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D CLI_3211 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D CLI_1461 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D CLI_1459 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, permease protein K09816 znuB; zinc transport system permease protein D CLI_1460 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CLI_1004 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein D CLI_1003 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D CLI_1005 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D CLI_2310 BioY family protein K03523 bioY; biotin transport system substrate-specific component D CLI_0992 BioY family protein K03523 bioY; biotin transport system substrate-specific component D CLI_2037 putative ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D CLI_3630 cobalt transport permease, CbiQ family K16785 ecfT; energy-coupling factor transport system permease protein D CLI_3632 putative cobalt ABC transporter, ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CLI_3631 putative cobalt ABC transporter, ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CLI_2287 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein D CLI_2288 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D CLI_2336 putative membrane protein K19310 bcrB; bacitracin transport system permease protein D CLI_2337 antibiotic ABC transporter, ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein D CLI_0314 efflux ABC transporter, permease protein K11632 bceB; bacitracin transport system permease protein D CLI_1489 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein D CLI_0313 ABC transporter, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein D CLI_1488 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein D CLI_1664 antibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein D CLI_1665 antibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein D CLI_1663 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein D CLI_3574 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D CLI_3575 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CLI_2838 ABC transporter, permease protein K16919 ytrC_D; acetoin utilization transport system permease protein D CLI_2839 ABC transporter, ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein D CLI_1143 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D CLI_1680 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D CLI_2332 ABC transporter, ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D CLI_1144 ABC transport ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D CLI_1681 ABC transporter ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D CLI_2021 ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D CLI_1997 putative ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D CLI_2020 putative ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D CLI_1996 ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D CLI_A0024 ABC transporter CbaT K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter D CLI_A0004 hypothetical protein K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter D CLI_0632 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein D CLI_2912 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:cbf02060] D CLI_3620 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D CLI_2453 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D CLI_1421 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CLI_2804 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CLI_0344 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0363 PTS system, glucose/maltose-specific, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0352 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_2891 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CLI_0341 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_0361 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_1685 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D CLI_1444 phosphotransferase system domain protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CLI_0962 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CLI_2903 PTS system, beta-glucoside-specific family, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CLI_0731 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CLI_0350 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-] D CLI_2053 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CLI_3532 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CLI_3533 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CLI_3535 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component D CLI_3597 PTS system, glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D CLI_3598 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D CLI_3599 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component D CLI_2199 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CLI_2198 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CLI_2197 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component D CLI_1758 fruK; fructose-1-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56] C 03070 Bacterial secretion system [PATH:cbf03070] D CLI_3122 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CLI_3121 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CLI_3677 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CLI_0296 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CLI_3643 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CLI_3126 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CLI_3890 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D CLI_0236 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CLI_2507 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CLI_2505 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CLI_3246 TraG/TraD family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] B B 09132 Signal transduction C 02020 Two-component system [PATH:cbf02020] D CLI_2589 putative phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CLI_2590 putative phosphate regulon DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CLI_0424 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CLI_2588 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CLI_0459 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CLI_0369 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3] D CLI_0368 DNA-binding response regulator K07770 cssR; two-component system, OmpR family, response regulator CssR D CLI_3761 putative protease K04771 degP; serine protease Do [EC:3.4.21.107] D CLI_2781 flagellin K02406 fliC; flagellin D CLI_2760 fliC; flagellin K02406 fliC; flagellin D CLI_2733 flagellin K02406 fliC; flagellin D CLI_0308 flagellin protein K02406 fliC; flagellin D CLI_2708 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA D CLI_2276 motA-1; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D CLI_2719 motA-2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D CLI_1055 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D CLI_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CLI_0313 ABC transporter, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein D CLI_1488 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein D CLI_0314 efflux ABC transporter, permease protein K11632 bceB; bacitracin transport system permease protein D CLI_1489 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein D CLI_0312 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D CLI_0311 DNA-binding response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D CLI_1492 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3] D CLI_0389 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3] D CLI_1491 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ D CLI_0388 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ D CLI_0391 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein D CLI_1493 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein D CLI_0392 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein D CLI_1494 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein D CLI_2034 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CLI_2035 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR D CLI_3525 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR D CLI_0437 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR D CLI_1121 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_0689 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_2372 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D CLI_2373 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D CLI_1990 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D CLI_1667 putative antibiotic transporter sensor protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D CLI_1666 putative antibiotic transporter response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D CLI_1991 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D CLI_1663 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein D CLI_1664 antibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein D CLI_1665 antibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein D CLI_1936 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D CLI_0275 malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D CLI_0318 malate dehydrogenase (oxaloacetate-decarboxylating) K00027 ME2; malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] D CLI_2288 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D CLI_2287 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein D CLI_0402 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CLI_0409 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CLI_0403 putative lipoprotein K07800 agrD; AgrD protein D CLI_0410 hypothetical protein K07800 agrD; AgrD protein D CLI_1271 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D CLI_1269 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA D CLI_2787 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D CLI_3785 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CLI_2897 CoA-transferase, A subunit K01034 atoD; acetate CoA/acetoacetate CoA-transferase alpha subunit [EC:2.8.3.8 2.8.3.9] D CLI_2898 CoA-transferase, B subunit K01035 atoA; acetate CoA/acetoacetate CoA-transferase beta subunit [EC:2.8.3.8 2.8.3.9] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CLI_0289 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CLI_1971 putative pilin K02650 pilA; type IV pilus assembly protein PilA D CLI_1836 hupS; [Ni/Fe] hydrogenase, small subunit K06282 hyaA; hydrogenase small subunit [EC:1.12.99.6] D CLI_1835 hupL; [Ni/Fe] hydrogenase, large subunit K06281 hyaB; hydrogenase large subunit [EC:1.12.99.6] D CLI_2799 cheR; chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CLI_0523 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2861 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0474 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0631 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1768 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1452 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1606 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0762 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1641 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0807 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2878 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2855 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1983 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_3351 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1739 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2067 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2802 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CLI_2795 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CLI_2798 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CLI_1080 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CLI_2796 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CLI_2800 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CLI_1772 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CLI_1435 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CLI_1045 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CLI_0694 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3] D CLI_0693 response regulator K07719 glnL; two-component system, response regulator GlnL D CLI_2858 glutaminase K01425 glsA; glutaminase [EC:3.5.1.2] D CLI_2777 putative UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CLI_0203 mnaA; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14] D CLI_2792 regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:cbf02024] D CLI_0814 luxS; autoinducer-2 production protein LuxS K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21] D CLI_1792 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D CLI_2226 phenazine biosynthesis protein, PhzF family K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D CLI_1981 glutamate decarboxylase K01580 E4.1.1.15; glutamate decarboxylase [EC:4.1.1.15] D CLI_2531 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D CLI_0414 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D CLI_1195 putative ABC transporter, solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D CLI_1197 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D CLI_1196 ABC transporter, permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D CLI_1198 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D CLI_0539 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CLI_0540 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein D CLI_0541 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D CLI_0542 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CLI_0543 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D CLI_1435 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CLI_1045 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CLI_2922 ribD; riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D CLI_1625 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_0944 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_1626 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_3814 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_3549 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_0949 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_0403 putative lipoprotein K07800 agrD; AgrD protein D CLI_0410 hypothetical protein K07800 agrD; AgrD protein D CLI_0402 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CLI_0409 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CLI_1271 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D CLI_1269 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA D CLI_3215 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CLI_3435 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D CLI_3214 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein D CLI_3213 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein D CLI_3212 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D CLI_3211 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D CLI_A0024 ABC transporter CbaT K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter D CLI_A0004 hypothetical protein K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter D CLI_A0023 putative bacteriocin ABC transporter, bacteriocin-binding protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter D CLI_1312 putative oligopeptide ABC transporter, oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CLI_0896 methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CLI_1453 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CLI_1311 putative oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CLI_1454 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CLI_1310 putative oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CLI_1455 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CLI_1456 peptide/opine/nickel uptake ABC transporter, PepT family, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CLI_3890 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D CLI_3677 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CLI_0296 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CLI_3643 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CLI_3126 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CLI_0236 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CLI_2507 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CLI_2505 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CLI_1936 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D CLI_2699 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D CLI_1990 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D CLI_1667 putative antibiotic transporter sensor protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D CLI_1666 putative antibiotic transporter response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D CLI_1991 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D CLI_1663 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein D CLI_1664 antibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein D CLI_1665 antibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:cbf02030] D CLI_0523 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2861 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0474 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0631 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1768 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1452 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1606 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0762 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1641 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0807 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2878 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2855 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1983 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_3351 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1739 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2067 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2798 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CLI_2802 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CLI_2795 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CLI_1080 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CLI_2796 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CLI_2797 cheC; chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D CLI_1782 cheX; chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D CLI_2800 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CLI_1772 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CLI_2801 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D CLI_2799 cheR; chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CLI_2728 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CLI_2794 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CLI_2793 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CLI_2276 motA-1; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D CLI_2719 motA-2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D CLI_2275 motB-1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D CLI_2718 motB-2; chemotaxis motB protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:cbf02040] D CLI_2730 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D CLI_2728 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CLI_2727 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D CLI_2726 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CLI_2725 flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D CLI_2724 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D CLI_2717 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D CLI_2794 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CLI_2793 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CLI_2716 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D CLI_2715 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CLI_2714 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CLI_2712 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CLI_2713 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB D CLI_2732 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D CLI_2731 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D CLI_2723 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D CLI_2721 flgE; flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE D CLI_2705 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D CLI_2704 flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG D CLI_2790 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D CLI_2789 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D CLI_2781 flagellin K02406 fliC; flagellin D CLI_2760 fliC; flagellin K02406 fliC; flagellin D CLI_2733 flagellin K02406 fliC; flagellin D CLI_0308 flagellin protein K02406 fliC; flagellin D CLI_2783 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D CLI_2784 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D CLI_2276 motA-1; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D CLI_2719 motA-2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D CLI_2275 motB-1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D CLI_2718 motB-2; chemotaxis motB protein K02557 motB; chemotaxis protein MotB D CLI_2792 regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D CLI_2990 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CLI_0289 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CLI_2708 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D CLI_0295 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism D CLI_1701 putative 5-methyltetrahydrofolate--homocysteine methyltransferase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:cbf01501] D CLI_3215 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CLI_3435 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D CLI_3214 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein D CLI_3213 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein D CLI_3212 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D CLI_3211 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D CLI_0745 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CLI_3142 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CLI_3053 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:cbf01502] D CLI_2034 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CLI_2035 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR D CLI_3525 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR D CLI_0437 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR D CLI_0538 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CLI_1734 alr-1; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CLI_3582 alr-2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CLI_1542 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D CLI_1543 mraY-2; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CLI_0965 mraY-1; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CLI_2811 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CLI_1121 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_0689 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cbf01503] D CLI_3625 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3170 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1516 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3169 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1877 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3070 probable endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_2390 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1730 putative peptidoglycan-binding protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3761 putative protease K04771 degP; serine protease Do [EC:3.4.21.107] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:cbf01000] C 01001 Protein kinases [BR:cbf01001] D CLI_2565 histidine kinase K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D CLI_2752 capsular exopolysaccharide family protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D CLI_2589 putative phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CLI_0369 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3] D CLI_0312 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D CLI_1492 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3] D CLI_0389 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3] D CLI_2034 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CLI_2372 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D CLI_1990 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D CLI_1667 putative antibiotic transporter sensor protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D CLI_0320 putative sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D CLI_1271 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D CLI_3479 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D CLI_2798 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CLI_0694 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:cbf01009] D CLI_2024 putative internalin K17550 PPP1R7; protein phosphatase 1 regulatory subunit 7 D CLI_1293 hypothetical protein K17560 URI1; unconventional prefoldin RPB5 interactor 1 D CLI_3557 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CLI_2051 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CLI_2566 protein phosphatase family protein K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16] C 01002 Peptidases and inhibitors [BR:cbf01002] D CLI_1559 lspA; signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D CLI_1409 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CLI_3019 gpr; GPR endopeptidase K06012 gpr; spore protease [EC:3.4.24.78] D CLI_1834 hydrogenase maturation protease K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-] D CLI_2596 spoIIGA; sporulation factor SpoIIGA K06383 spoIIGA; stage II sporulation protein GA (sporulation sigma-E factor processing peptidase) [EC:3.4.23.-] D CLI_1984 cloSI; clostripain K08587 cloSI; clostripain [EC:3.4.22.8] D CLI_3465 guaA; GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D CLI_A0024 ABC transporter CbaT K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter D CLI_A0004 hypothetical protein K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter D CLI_0119 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_2859 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_2382 nlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_1873 nlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_0584 cell wall-associated hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_2934 purF-1; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CLI_2968 purF-2; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D CLI_3593 glmS; glucosamine--fructose-6-phosphate aminotransferase, isomerizing K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D CLI_2819 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D CLI_1110 DJ-1/PfpI family protein K03152 thiJ; protein deglycase [EC:3.5.1.124] D CLI_2250 linear amide C-N hydrolase, choloylglycine hydrolase family K01442 cbh; choloylglycine hydrolase [EC:3.5.1.24] D CLI_2179 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CLI_0402 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CLI_0409 putative accessory gene regulator protein B K07813 agrB; accessory gene regulator B D CLI_1393 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CLI_2259 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CLI_A0011 caax amino protease family protein K07052 K07052; CAAX protease family protein D CLI_1640 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CLI_0683 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CLI_3365 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CLI_0648 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CLI_0570 CAAX amino terminal protease family protein K07052 K07052; CAAX protease family protein D CLI_1530 bacillolysin K01400 nprE; bacillolysin [EC:3.4.24.28] D CLI_1525 npr-1; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28] D CLI_1526 npr-2; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28] D CLI_1527 npr-3; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28] D CLI_1529 npr-5; thermolysin metallopeptidase K01400 nprE; bacillolysin [EC:3.4.24.28] D CLI_1698 collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D CLI_1470 zinc carboxypeptidase family protein K01308 yqgT; g-D-glutamyl-meso-diaminopimelate peptidase [EC:3.4.19.11] D CLI_1121 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_0689 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_3481 putative peptidase K06972 PITRM1; presequence protease [EC:3.4.24.-] D CLI_1305 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D CLI_3516 putative dipeptidase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D CLI_0524 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4] D CLI_2923 pepD-3; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CLI_2281 pepD-2; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CLI_1484 pepD-1; aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-] D CLI_3796 map-2; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D CLI_3641 map-1; methionine aminopeptidase, type I K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D CLI_0415 metallopeptidase, family M24 K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D CLI_2095 pepQ; Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D CLI_1125 peptidase, M24 family K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D CLI_0620 pepP; xaa-pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D CLI_2314 metallopeptidase, family M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D CLI_0851 boNT_F; botulinum neurotoxin type F, BoNT/F K06011 boNT; botulinum neurotoxin [EC:3.4.24.69] D CLI_2844 aminopeptidase II K19689 ampS; aminopeptidase [EC:3.4.11.-] D CLI_3617 iadA; isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-] D CLI_3515 hflB; ATP-dependent metallopeptidase HflB K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CLI_3733 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CLI_0475 cell division protease FtsH homolog K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CLI_0278 glutamyl aminopeptidase family protein K01269 yhfE; aminopeptidase [EC:3.4.11.-] D CLI_3047 putative metalloprotease K06402 spoIVFB; stage IV sporulation protein FB [EC:3.4.24.-] D CLI_2481 rseP; RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D CLI_3761 putative protease K04771 degP; serine protease Do [EC:3.4.21.107] D CLI_3816 subtilase family protein K17734 aprX; serine protease AprX [EC:3.4.21.-] D CLI_1861 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_1855 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_3033 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_1502 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_3370 clpP-2; ATP-dependent Clp protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D CLI_3269 putative Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D CLI_1898 putative Clp protease K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D CLI_3367 lon; ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CLI_3866 ATP-dependent protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D CLI_3368 lonB; ATP-dependent protease LonB K04076 lonB; ATP-dependent Lon protease [EC:3.4.21.53] D CLI_1789 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CLI_0654 lepB-1; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CLI_2499 lepB-2; signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D CLI_2096 pepIP; prolyl aminopeptidase K01259 pip; proline iminopeptidase [EC:3.4.11.5] D CLI_3573 carboxyl-terminal protease K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D CLI_0174 cphB; cyanophycinase K13282 cphB; cyanophycinase [EC:3.4.15.6] D CLI_0473 peptidase, S54 (rhomboid) family K19225 gluP; rhomboid protease GluP [EC:3.4.21.105] D CLI_1937 spoIVB; SpoIVB peptidase K06399 spoIVB; stage IV sporulation protein B [EC:3.4.21.116] D CLI_0105 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D CLI_3182 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-] D CLI_2618 peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-] C 01003 Glycosyltransferases [BR:cbf01003] D CLI_0182 conserved hypothetical protein K03429 ugtP; processive 1,2-diacylglycerol beta-glucosyltransferase [EC:2.4.1.315] D CLI_3142 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CLI_3151 glycosyl transferase, WecB/TagA/CpsF family K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D CLI_0202 tagO; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] D CLI_3508 cgs; cyclic beta 1-2 glucan synthetase K13688 chvB; cyclic beta-1,2-glucan glucanotransferase [EC:2.4.1.397] C 01005 Lipopolysaccharide biosynthesis proteins [BR:cbf01005] D CLI_0370 glycosyl transferase, group 2 family K20534 gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-] D CLI_0202 tagO; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cbf01011] D CLI_3787 murA-2; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CLI_0214 murA-1; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D CLI_3562 murB; UDP-N-acetylmuramate dehydrogenase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D CLI_3768 murC; UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D CLI_3724 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D CLI_1541 murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D CLI_0538 ddlB; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D CLI_1734 alr-1; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CLI_3582 alr-2; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D CLI_3784 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D CLI_0105 LD-carboxypeptidase family protein K01297 ldcA; muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] D CLI_1543 mraY-2; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CLI_0965 mraY-1; phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D CLI_2811 murG; undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D CLI_0390 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_0489 uppP; undecaprenyl-diphosphatase UppP K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_0422 PAP2 family protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D CLI_3154 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D CLI_3142 penicillin-binding protein, 1A family K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D CLI_3053 penicillin-binding protein K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4] D CLI_1540 stage V sporulation protein D K08384 spoVD; stage V sporulation protein D (sporulation-specific penicillin-binding protein) D CLI_3567 penicillin-binding protein K05364 pbpA; penicillin-binding protein A D CLI_1861 dacF; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_1855 dacB; serine-type D-Ala-D-Ala carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_3033 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_1502 D-alanyl-D-alanine carboxypeptidase family protein K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D CLI_1121 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_0689 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_0119 NlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_2859 conserved hypothetical protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_2382 nlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_1873 nlpC/P60 family protein K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_0584 cell wall-associated hydrolase K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-] D CLI_2179 sortase family protein K07284 srtA; sortase A [EC:3.4.22.70] D CLI_3066 transglycosylase SLT domain protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CLI_2620 conserved hypothetical protein TIGR00247 K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D CLI_0269 sleB; spore-cortex-lytic enzyme K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CLI_1417 cell Wall hydrolase K27245 sleB; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D CLI_0215 spoIID; stage II sporulation protein D K06381 spoIID; stage II sporulation protein D (peptidoglycan lytic transglycosylase) [EC:4.2.2.29] D CLI_3625 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3170 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1516 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3169 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1877 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3070 probable endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_2390 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1730 putative peptidoglycan-binding protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:cbf01004] D CLI_3826 fabD; malonyl CoA-acyl carrier protein transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D CLI_3829 fabH; 3-oxoacyl-(acyl-carrier-protein) synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CLI_0806 putative 3-oxoacyl-[acyl-carrier-protein] synthase III K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D CLI_3824 fabF; 3-oxoacyl-(acyl-carrier-protein) synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D CLI_0582 fabG-1; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CLI_3825 fabG; 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D CLI_3822 fabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D CLI_3827 oxidoreductase, 2-nitropropane dioxygenase family K02371 fabK; enoyl-[acyl-carrier protein] reductase II [EC:1.3.1.9] D CLI_2955 lipase/acylhydrolase, GDSL family K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D CLI_3463 AMP-binding enzyme K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D CLI_2513 plsX; fatty acid/phospholipid synthesis protein PlsX K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D CLI_0501 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D CLI_0273 1-acyl-sn-glycerol-3-phosphate acyltransferase family protein K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins C 01006 Prenyltransferases [BR:cbf01006] D CLI_1947 ispA; geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] D CLI_2487 uppS; di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CLI_1422 undecaprenyl pyrophosphate synthetase homolog K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D CLI_1793 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] C 01007 Amino acid related enzymes [BR:cbf01007] D CLI_1183 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D CLI_3496 tyrS-2; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CLI_1287 tyrS-1; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CLI_3504 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CLI_3688 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CLI_1163 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CLI_0132 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CLI_0154 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CLI_3228 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CLI_0249 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CLI_3727 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CLI_3113 aspS-2; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CLI_0677 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CLI_1101 aspS-1; aspartate--tRNA ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D CLI_3114 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CLI_3726 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CLI_0591 serS-2; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CLI_0026 serS-1; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CLI_3517 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CLI_3690 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CLI_3196 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CLI_2627 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CLI_3189 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CLI_3188 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CLI_2454 aspB-3; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1799 aspB-1; aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D CLI_1096 putative aspartate aminotransferase K11358 yhdR; aspartate aminotransferase [EC:2.6.1.1] D CLI_3219 aminotransferase, classes I and II K10907 K10907; aminotransferase [EC:2.6.1.-] D CLI_1653 hisC; histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D CLI_1497 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CLI_2030 aminotransferase, classes I and II K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D CLI_2806 putative branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D CLI_0916 putative pleiotropic regulatory protein K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98] D CLI_2769 aminotransferase, DegT/DnrJ/EryC1/StrS family K13010 per; perosamine synthetase [EC:2.6.1.102] C 00199 Cytochrome P450 [BR:cbf00199] D CLI_1129 cytochrome P450 K15629 CYP152A; fatty-acid peroxygenase [EC:1.11.2.4] C 00194 Photosynthesis proteins [BR:cbf00194] D CLI_0212 atpC; ATP synthase F1, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D CLI_0211 atpD; ATP synthase F1, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D CLI_0210 atpG; ATP synthase F1, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D CLI_0209 atpA; ATP synthase F1, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D CLI_0208 atpH; ATP synthase F1, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D CLI_0207 atpF; ATP synthase F0, B subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b D CLI_0206 atpE; ATP synthase F0, C subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c D CLI_0205 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CLI_0204 putative ATP synthase protein I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:cbf03000] D CLI_3290 conserved domain protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2433 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2130 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_3795 transcriptional regulator, AraC family K18325 ramA; AraC family of transcriptional regulator, multidrug resistance transcriptional activator D CLI_0865 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D CLI_2209 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D CLI_0978 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D CLI_0682 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D CLI_0804 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D CLI_1659 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D CLI_2257 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CLI_1357 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CLI_0217 spoIIID; stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D CLI_1695 transcriptional regulator, DeoR family K22103 glcR; DeoR family transcriptional regulator, carbon catabolite repression regulator D CLI_2995 CBS domain protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator D CLI_0155 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CLI_2055 treR; trehalose operon repressor K03486 treR2; GntR family transcriptional regulator, trehalose operon transcriptional repressor D CLI_2885 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D CLI_1180 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CLI_1600 transcriptional regulator, GntR family K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CLI_0957 transcriptional regulator, GntR family K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D CLI_0717 transcriptional regulator, GntR family/aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D CLI_2840 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator D CLI_1593 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator D CLI_0605 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D CLI_0926 HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CLI_2312 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D CLI_0131 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D CLI_2623 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CLI_2880 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CLI_1468 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CLI_0471 transcriptional regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CLI_3358 transcriptional regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator D CLI_1435 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CLI_1045 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D CLI_0733 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D CLI_1627 cyclic nucleotide-binding domain protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator D CLI_0950 conserved domain protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator D CLI_1109 cyclic nucleotide-binding domain protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator D CLI_1260 rrf2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D CLI_2632 rrF2 family protein K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D CLI_0833 arsR; arsenical resistance operon repressor ArsR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CLI_0839 arsenical resistance operon repressor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CLI_0560 putative cadmium resistance transcriptional regulator CadC K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D CLI_0704 cupin domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D CLI_0799 conserved hypothetical protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D CLI_0152 transcriptional regulator, PadR family K10947 K10947; PadR family transcriptional regulator D CLI_1619 putative iron-dependent repressor K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D CLI_0745 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CLI_1205 birA; birA bifunctional protein K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CLI_0823 putative DNA-binding protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator D CLI_3767 purR; pur operon repressor K09685 purR; HTH-type transcriptional regulator, purine operon repressor D CLI_2961 sigma-54 dependent transcriptional regulator, Fis family K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CLI_1705 acoR; aco operon transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CLI_1723 sensory box sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CLI_2004 aorR; aor transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CLI_1719 sensory box sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CLI_0675 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CLI_2026 sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CLI_2076 putative sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CLI_3476 transcriptional regulator, Rex family K01926 rex; redox-sensing transcriptional repressor D CLI_2492 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D CLI_0554 conserved hypothetical protein K07727 K07727; putative transcriptional regulator D CLI_2188 conserved hypothetical protein K07727 K07727; putative transcriptional regulator D CLI_0652 DNA binding protein K07729 K07729; putative transcriptional regulator D CLI_0842 conserved hypothetical protein K07729 K07729; putative transcriptional regulator D CLI_2344 putative DNA-binding protein K07729 K07729; putative transcriptional regulator D CLI_A0008 conserved domain protein K07729 K07729; putative transcriptional regulator D CLI_2091 DNA-binding protein K07729 K07729; putative transcriptional regulator D CLI_2447 DNA-binding protein K07729 K07729; putative transcriptional regulator D CLI_1334 putative DNA-binding protein K07729 K07729; putative transcriptional regulator D CLI_3099 putative DNA-binding protein K07729 K07729; putative transcriptional regulator D CLI_3100 DNA-binding protein K07729 K07729; putative transcriptional regulator D CLI_0622 conserved domain protein K07729 K07729; putative transcriptional regulator D CLI_3581 conserved hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D CLI_0961 transcription antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator D CLI_0730 transcriptional antiterminator, BglG family K03488 licT; beta-glucoside operon transcriptional antiterminator D CLI_2905 transcription antiterminator K03488 licT; beta-glucoside operon transcriptional antiterminator D CLI_2889 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator D CLI_2805 transcriptional antiterminator, BglG family K03480 glcT; transcriptional antiterminator D CLI_2148 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CLI_1388 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CLI_2661 conserved hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CLI_0120 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D CLI_3757 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D CLI_3883 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CLI_3885 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CLI_2820 glpP; glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D CLI_1942 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D CLI_3014 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D CLI_3699 ctsR; transciptional repressor CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D CLI_0042 putative sensory box sigma-54 dependent transcriptional regulator K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport D CLI_0290 cggR; central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D CLI_1644 putative deoxyribonucleoside regulator K05346 deoR; deoxyribonucleoside regulator D CLI_1561 pyrR-1; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CLI_2870 pyrR-2; pyrimidine operon regulatory protein/uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CLI_2592 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D CLI_1537 mraZ; mraZ protein K03925 mraZ; transcriptional regulator MraZ C 03021 Transcription machinery [BR:cbf03021] D CLI_0592 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D CLI_3634 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CLI_3671 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CLI_3670 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CLI_2574 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CLI_2990 rpoD; RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D CLI_0075 RNA polymerase sigma-70 factor family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CLI_0749 RNA polymerase sigma-70 factor family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CLI_0918 RNA polymerase sigma-70 factor, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CLI_2362 RNA polymerase sigma-70 factor, ECF family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CLI_3522 RNA polymerase sigma factor, sigma-70 family K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D CLI_3146 sigF; RNA polymerase sigma-F factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CLI_2594 sigG; RNA polymerase sigma-G factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CLI_2595 sigE; RNA polymerase sigma-E factor K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CLI_2603 RNA polymerase sigma-70 factor family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CLI_2443 RNA polymerase sigma factor, sigma-70 family K03091 sigE_F_G; RNA polymerase sigma-E/F/G factor D CLI_3683 sigH; RNA polymerase sigma-H factor K27000 sigH; RNA polymerase sigma-H factor D CLI_0289 rpoN; RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D CLI_2708 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA D CLI_2477 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D CLI_1950 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D CLI_3676 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D CLI_3112 sigma-E factor regulator, RseC/MucC family K03803 rseC; sigma-E factor negative regulatory protein RseC D CLI_3728 greA-2; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D CLI_0751 greA-1; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D CLI_0189 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:cbf03019] D CLI_3044 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D CLI_2511 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CLI_2622 RNA-metabolizing metallo-beta-lactamase family protein K12574 rnj; ribonuclease J [EC:3.1.-.-] D CLI_1379 RNA-metabolising metallo-beta-lactamase K12574 rnj; ribonuclease J [EC:3.1.-.-] D CLI_2459 HDIG/HD/KH domain protein K18682 rny; ribonucrease Y [EC:3.1.-.-] D CLI_0297 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CLI_3345 HDIG domain protein K03698 cbf; 3'-5' exoribonuclease [EC:3.1.-.-] D CLI_0719 rhlE; ATP-dependent RNA helicase RhlE K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D CLI_2852 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_1775 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_2077 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_1773 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_1077 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CLI_0295 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CLI_2468 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D CLI_0189 rho; transcription termination factor Rho K03628 rho; transcription termination factor Rho D CLI_3557 pfkA; 6-phosphofructokinase K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] D CLI_3012 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CLI_3468 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CLI_1792 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D CLI_2787 csrA; carbon storage regulator K03563 csrA; carbon storage regulator D CLI_3561 conserved hypothetical protein K06958 rapZ; RNase adapter protein RapZ C 03041 Spliceosome C 03011 Ribosome [BR:cbf03011] D CLI_1240 putative 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D CLI_1802 4-hydroxy-3-methylbut-2-enyl diphosphate reductase / ribosomal protein S1 homolog K02945 RP-S1; small subunit ribosomal protein S1 D CLI_2491 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D CLI_3657 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D CLI_3590 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CLI_3635 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D CLI_3646 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D CLI_3873 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D CLI_3667 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D CLI_3649 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D CLI_3627 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D CLI_3664 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D CLI_3636 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D CLI_3668 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D CLI_3637 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D CLI_3650 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D CLI_2469 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D CLI_2504 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D CLI_3654 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D CLI_3871 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D CLI_3659 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D CLI_3020 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D CLI_3006 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D CLI_3674 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D CLI_3660 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D CLI_3663 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D CLI_3662 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D CLI_3651 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D CLI_3648 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D CLI_3867 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D CLI_3673 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D CLI_3675 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D CLI_3672 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D CLI_3628 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D CLI_3653 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D CLI_3644 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D CLI_3656 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D CLI_3633 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D CLI_3647 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D CLI_2500 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D CLI_3193 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D CLI_3043 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D CLI_3658 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D CLI_3661 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D CLI_3652 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D CLI_3041 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D CLI_2559 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D CLI_3655 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D CLI_3645 rpmD; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D CLI_0190 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D CLI_2514 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D CLI_3678 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D CLI_3893 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D CLI_3194 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D CLI_3638 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D CLI_3356 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 K02897 RP-L25; large subunit ribosomal protein L25 D CLI_3175 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25 D CLI_3669 ribosomal protein L7Ae family protein K07590 RP-L7A; large subunit ribosomal protein L7A D CLI_0013 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0072 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0081 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_3718 rrfI; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_3706 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0064 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0497 rrfG; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0102 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0093 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_3711 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_3722 rrsI; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0077 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0490 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0068 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0089 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0060 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0009 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0098 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0012 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0071 rrlI-1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0063 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0101 rrlH-1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0092 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0496 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_3719 rrlI-2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_3707 rrlH-2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0080 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:cbf03009] D CLI_2511 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CLI_2998 era; GTP-binding protein Era K03595 era; GTPase D CLI_3040 obg; Spo0B-associated GTP-binding protein K03979 obgE; GTPase [EC:3.6.5.-] D CLI_2477 nusA; N utilization substance protein A K02600 nusA; transcription termination/antitermination protein NusA D CLI_1950 nusB; N utilization substance protein B K03625 nusB; transcription antitermination protein NusB D CLI_3676 nusG; transcription termination/antitermination factor NusG K02601 nusG; transcription termination/antitermination protein NusG D CLI_3444 RNA pseudouridine synthase family protein K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D CLI_0137 ksgA; dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D CLI_2568 sun; ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D CLI_2555 rsmD; RNA methyltransferase, RsmD family K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D CLI_3009 RNA methyltransferase, RsmE family K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D CLI_3886 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CLI_1538 mraW; S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D CLI_0118 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D CLI_1944 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D CLI_3685 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D CLI_3791 conserved hypothetical protein TIGR00246 K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D CLI_2567 radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D CLI_2911 florfenicol/chloramphenicol resistance protein K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224] D CLI_3552 rumA-2; 23S rRNA (uracil-5-)-methyltransferase RumA K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D CLI_1808 rluB; ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D CLI_1517 pseudouridine synthase, RluA family K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D CLI_1560 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CLI_3034 pseudouridine synthase, RluA family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D CLI_3495 rimI; ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D CLI_0059 acetyltransferase, GNAT family K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D CLI_2502 rimM; 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D CLI_2462 RNA modification enzyme, MiaB family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D CLI_3010 prmA; ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D CLI_3044 ribonuclease, Rne/Rng family K08301 rng; ribonuclease G [EC:3.1.26.-] D CLI_2625 conserved hypothetical protein TIGR00250 K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D CLI_3687 RNase3 domain protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-] D CLI_2852 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_1775 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_2077 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_1773 ATP-dependent RNA helicase, DEAD/DEAH box family K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] D CLI_2564 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] D CLI_2582 engA; ribosome-associated GTPase EngA K03977 engA; GTPase D CLI_2498 GTP-binding protein K14540 rbgA; ribosome biogenesis GTPase A D CLI_3139 GTP-binding protein K03665 hflX; GTPase D CLI_0197 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CLI_3118 relA; GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D CLI_2473 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D CLI_2478 conserved hypothetical protein K09748 rimP; ribosome maturation factor RimP D CLI_0003 S4 domain protein K14761 rlbA; ribosome-associated protein D CLI_3001 conserved hypothetical protein TIGR00043 K07042 ybeY; probable rRNA maturation factor D CLI_3039 putative RNA-binding protein K07574 yhbY; RNA-binding protein D CLI_0235 yfiA; ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D CLI_1536 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase D CLI_2515 ribosomal protein L32 family protein K07040 yceD; DUF177 domain-containing protein C 03016 Transfer RNA biogenesis [BR:cbf03016] D CLI_1472 rnz; ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11] D CLI_2365 polyA polymerase family protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] D CLI_3517 proS; proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CLI_3690 putative prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D CLI_0154 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D CLI_0249 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CLI_0132 metG; methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D CLI_1163 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CLI_3727 lysS; lysine--tRNA ligase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6] D CLI_3113 aspS-2; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CLI_2627 alaS; alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D CLI_0677 asnS; asparagine--tRNA ligase K01893 NARS; asparaginyl-tRNA synthetase [EC:6.1.1.22] D CLI_3726 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CLI_3196 thrS; threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D CLI_0591 serS-2; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CLI_0026 serS-1; serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D CLI_3688 cysS; cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D CLI_3228 valS; valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D CLI_3114 hisS; histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D CLI_3189 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D CLI_3188 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D CLI_3496 tyrS-2; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CLI_1287 tyrS-1; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CLI_3504 trpS; tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D CLI_3117 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96] D CLI_3007 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CLI_1407 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CLI_0579 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D CLI_3629 truA-2; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CLI_1978 truA-1; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D CLI_2471 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D CLI_2631 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_1264 iscS-1; cystathionine gamma-lyase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_0197 Sua5/YciO/YrdC/YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D CLI_1793 miaA; tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D CLI_3888 trmE; tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D CLI_3887 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CLI_3892 rnpA; ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D CLI_3935 bacterial RNase P class A K01978 rnpB; M1 RNA D CLI_2876 ligT; 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D CLI_1101 aspS-1; aspartate--tRNA ligase K09759 aspC; nondiscriminating aspartyl-tRNA synthetase [EC:6.1.1.23] D CLI_1183 gltX; glutamate--tRNA ligase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24] D CLI_1590 conserved hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D CLI_0044 cytidine/deoxycytidylate deaminase family protein K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D CLI_3730 dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D CLI_1796 miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D CLI_3008 RNA modification enzyme, MiaB family K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D CLI_2501 trmD; tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D CLI_2988 conserved hypothetical protein K06967 trmK; tRNA (adenine22-N1)-methyltransferase [EC:2.1.1.217] D CLI_0282 RNA methyltransferase, TrmH family, group 2 K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D CLI_0117 conserved hypothetical protein K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] D CLI_3190 RNA methyltransferase, TrmH family K03437 spoU; RNA methyltransferase, TrmH family D CLI_1267 trmU-1; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CLI_2962 trmU-2; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D CLI_0220 conserved hypothetical protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA D CLI_3128 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D CLI_1639 ExsB protein K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D CLI_1636 putative 6-pyruvoyl tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CLI_0909 queD; queuosine biosynthesis protein QueD K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50] D CLI_1637 radical SAM domain protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3] D CLI_0272 iron-sulfur cluster-binding protein K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D CLI_3127 tgt; tRNA-guanine transglycosylase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D CLI_3735 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D CLI_3494 glycoprotease family protein K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D CLI_3483 metalloendopeptidase, glycoprotease family K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D CLI_3493 conserved hypothetical protein TIGR00150 K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE D CLI_0057 thiF domain protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase D CLI_2551 conserved hypothetical protein K27343 tmcAL; tRNA(Met) cytidine acetate ligase [EC:6.3.4.-] D CLI_0297 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D CLI_2468 pnpA; polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:cbf03012] D CLI_2474 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CLI_3195 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CLI_3477 putative drug resistance ABC transporter, ATP-binding protein K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D CLI_2490 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D CLI_3665 tuf-1; translation elongation factor Tu K02358 tuf; elongation factor Tu D CLI_3679 tuf-2; translation elongation factor Tu K02358 tuf; elongation factor Tu D CLI_3701 fusA-2; translation elongation factor G K02355 fusA; elongation factor G D CLI_3666 fusA-1; translation elongation factor G K02355 fusA; elongation factor G D CLI_3029 selB; selenocysteine-specific translation elongation factor K03833 selB; selenocysteine-specific elongation factor D CLI_0194 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D CLI_2488 frr; ribosome recycling factor K02838 frr; ribosome recycling factor D CLI_0193 prmC; protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D CLI_3760 pth; aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D CLI_3639 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D CLI_1961 efp; translation elongation factor P K02356 efp; elongation factor P D CLI_0237 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D CLI_3502 prfC; peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 C 03110 Chaperones and folding catalysts [BR:cbf03110] D CLI_0484 clpB; clpB protein K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D CLI_3696 clpC; negative regulator of genetic competence MecB/ClpC K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC D CLI_3369 clpX; ATP-dependent Clp protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D CLI_2051 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CLI_3012 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CLI_3468 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CLI_3011 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D CLI_0254 molecular chaperone, DnaJ family K03686 dnaJ; molecular chaperone DnaJ D CLI_3208 hsp33; 33 kDa chaperonin K04083 hslO; molecular chaperone Hsp33 D CLI_3013 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D CLI_0913 heat shock protein K13993 HSP20; HSP20 family protein D CLI_1754 heat shock protein, molecular chaperone K13993 HSP20; HSP20 family protein D CLI_3469 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES D CLI_3761 putative protease K04771 degP; serine protease Do [EC:3.4.21.107] D CLI_3515 hflB; ATP-dependent metallopeptidase HflB K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CLI_3733 ATP-dependent metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CLI_0475 cell division protease FtsH homolog K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D CLI_0205 atpB; ATP synthase F0, A subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a D CLI_0518 hypA-1; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D CLI_2268 hypA-2; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF D CLI_0516 hypB-1; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D CLI_2269 hypB-2; hydrogenase accessory protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB D CLI_3783 putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] D CLI_3758 prsA-1; foldase protein PrsA K07533 prsA; foldase protein PrsA [EC:5.2.1.8] D CLI_0097 peptidil-prolyl isomerase family protein K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D CLI_1345 thioredoxin family protein K03671 TXN; thioredoxin D CLI_3616 trx; thioredoxin K03671 TXN; thioredoxin D CLI_1815 thioredoxin family protein K03671 TXN; thioredoxin D CLI_1338 rubredoxin K03676 grxC; glutaredoxin 3 C 04131 Membrane trafficking [BR:cbf04131] D CLI_0835 arsA; arsenical pump-driving ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D CLI_0291 gap-1; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CLI_3556 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CLI_2051 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG C 04121 Ubiquitin system [BR:cbf04121] C 03051 Proteasome [BR:cbf03051] D CLI_2051 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG C 03032 DNA replication proteins [BR:cbf03032] D CLI_0477 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D CLI_3290 conserved domain protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2433 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2130 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_3754 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CLI_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CLI_3865 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D CLI_3834 putative DNA replication protein DnaC K02315 dnaC; DNA replication protein DnaC D CLI_3097 putative DNA replication protein K02315 dnaC; DNA replication protein DnaC D CLI_2991 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D CLI_3872 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CLI_0468 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein D CLI_3558 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CLI_2479 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CLI_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CLI_3021 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CLI_0113 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CLI_0329 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CLI_0047 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CLI_2497 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D CLI_3068 polA-2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CLI_3441 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CLI_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CLI_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CLI_2821 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CLI_2822 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CLI_2493 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CLI_1374 topB; DNA topoisomerase III K03169 topB; DNA topoisomerase III [EC:5.6.2.1] D CLI_1587 DNA topoisomerase K03169 topB; DNA topoisomerase III [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:cbf03036] D CLI_3290 conserved domain protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2433 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2130 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2511 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D CLI_3754 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CLI_0001 dnaA; chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein D CLI_1792 hfq; RNA chaperone Hfq K03666 hfq; host factor-I protein D CLI_0926 HTH-type transcriptional regulator LrpC K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D CLI_2508 smc; chromosome segregation protein SMC K03529 smc; chromosome segregation protein D CLI_1859 scpA; segregation and condensation protein A K05896 scpA; segregation and condensation protein A D CLI_1858 scpB; segregation and condensation protein B K06024 scpB; segregation and condensation protein B D CLI_2598 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CLI_3750 putative cell division protein FtsL K13052 divIC; cell division protein DivIC D CLI_3575 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CLI_2463 ftsK; DNA translocase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D CLI_1539 cell division protein FtsL homolog K03586 ftsL; cell division protein FtsL D CLI_1545 cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ D CLI_1544 cell cycle protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW D CLI_3574 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D CLI_2597 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CLI_3187 conserved hypothetical protein K09888 zapA; cell division protein ZapA D CLI_3625 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3170 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1516 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3169 putative N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1877 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3070 probable endolysin K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_2390 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_1730 putative peptidoglycan-binding protein K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_3052 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D CLI_3051 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D CLI_3050 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D CLI_1553 divIVA; cell-division initiation protein DivIVA K04074 divIVA; cell division initiation protein D CLI_1550 conserved hypothetical protein K09772 sepF; cell division inhibitor SepF D CLI_0218 mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins D CLI_3056 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CLI_3055 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC D CLI_3054 mreD; rod shape-determining protein MreD K03571 mreD; rod shape-determining protein MreD D CLI_0695 rodA-1; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D CLI_3049 rodA-2; rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA D CLI_3884 soj; sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein D CLI_3883 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CLI_3885 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CLI_2821 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CLI_2822 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CLI_3887 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D CLI_3886 gidB; 16S rRNA methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D CLI_1867 xerD; tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D CLI_1935 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD D CLI_1787 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD D CLI_3538 site-specific recombinase, phage integrase family K04763 xerD; integrase/recombinase XerD D CLI_3755 MazG family protein K02499 yabN; tetrapyrrole methylase family protein / MazG family protein D CLI_0144 MRP protein homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning D CLI_3366 GTP-binding protein K03978 engB; GTP-binding protein D CLI_3559 conserved hypothetical protein K09762 whiA; cell division protein WhiA C 03400 DNA repair and recombination proteins [BR:cbf03400] D CLI_1611 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CLI_1349 DNA-3-methyladenine glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] D CLI_3473 putative 8-oxoguanine DNA glycosylase K03660 OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] D CLI_0274 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D CLI_0592 putative ATP-dependent helicase K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3] D CLI_1320 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CLI_0067 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D CLI_0130 udgA; uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D CLI_0716 conserved domain protein K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D CLI_0737 methyladenine glycosylase family protein K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D CLI_1563 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D CLI_2815 AP endonuclease, family 2 K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] D CLI_2814 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D CLI_3441 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D CLI_3068 polA-2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D CLI_3570 uvrA; excinuclease ABC, A subunit K03701 uvrA; excinuclease ABC subunit A D CLI_3571 uvrB; excinuclease ABC, B subunit K03702 uvrB; excinuclease ABC subunit B D CLI_3564 uvrC; excinuclease ABC, C subunit K03703 uvrC; excinuclease ABC subunit C D CLI_3343 GIY-YIG domain protein K03703 uvrC; excinuclease ABC subunit C D CLI_1414 helicase, UvrD/REP/exonuclease family protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_3442 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_3514 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_1512 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_2959 putative helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D CLI_3671 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D CLI_3670 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D CLI_3634 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D CLI_2574 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D CLI_3759 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D CLI_1795 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D CLI_3181 MutS2 family protein K07456 mutS2; DNA mismatch repair protein MutS2 D CLI_0710 MutS domain protein K07456 mutS2; DNA mismatch repair protein MutS2 D CLI_1794 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D CLI_1949 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D CLI_1948 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D CLI_3558 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D CLI_2479 polC; DNA polymerase III, alpha subunit, Gram-positive type K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] D CLI_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D CLI_3021 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D CLI_0113 putative DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D CLI_0329 exonuclease, DNA polymerase III, epsilon subunit family K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D CLI_0047 dnaX; DNA polymerase III, gamma and tau subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D CLI_3872 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CLI_0468 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein D CLI_0232 helicase, RecD/TraA family K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] D CLI_2460 recA; recA protein K03553 recA; recombination protein RecA D CLI_3130 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D CLI_3129 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D CLI_2572 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D CLI_0557 sbcC; exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 D CLI_0556 putative nuclease SbcCD, D subunit K03547 sbcD; DNA repair protein SbcD/Mre11 D CLI_3695 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D CLI_0004 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF D CLI_2556 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D CLI_0049 recR; recombination protein RecR K06187 recR; recombination protein RecR D CLI_1941 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CLI_0522 addA; recombination helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D CLI_0511 addB; ATP-dependent nuclease subunit B K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D CLI_0007 gyrA; DNA gyrase, A subunit K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D CLI_0006 gyrB; DNA gyrase, B subunit K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D CLI_2493 topA; DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D CLI_3754 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D CLI_2614 recombinase, phage RecT family K07455 recT; recombination protein RecT D CLI_1077 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D CLI_2867 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D CLI_1789 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CLI_3314 recX; regulatory protein RecX K03565 recX; regulatory protein D CLI_2864 nrdA; ribonucleoside-diphosphate reductase, alpha subunit K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CLI_2863 nrdB; ribonucleoside-diphosphate reductase, beta subunit K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CLI_2472 DHH family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] C 03029 Mitochondrial biogenesis [BR:cbf03029] D CLI_2474 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D CLI_3195 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D CLI_2490 tsf; translation elongation factor Ts K02357 tsf; elongation factor Ts D CLI_3665 tuf-1; translation elongation factor Tu K02358 tuf; elongation factor Tu D CLI_3679 tuf-2; translation elongation factor Tu K02358 tuf; elongation factor Tu D CLI_3701 fusA-2; translation elongation factor G K02355 fusA; elongation factor G D CLI_3666 fusA-1; translation elongation factor G K02355 fusA; elongation factor G D CLI_1463 helicase domain protein K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D CLI_2998 era; GTP-binding protein Era K03595 era; GTPase D CLI_3496 tyrS-2; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CLI_1287 tyrS-1; tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D CLI_0249 leuS; leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D CLI_3113 aspS-2; aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D CLI_3726 glyS; glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14] D CLI_1163 argS; arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D CLI_3437 gatA; glutamyl-tRNA(Gln) amidotransferase, A subunit K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D CLI_3436 gatB; glutamyl-tRNA(Gln) amidotransferase, B subunit K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D CLI_3438 gatC; glutamyl-tRNA(Gln) amidotransferase, C subunit K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D CLI_3872 ssb; single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CLI_0468 single-strand binding domain protein K03111 ssb; single-strand DNA-binding protein D CLI_3012 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CLI_3013 grpE; co-chaperone GrpE K03687 GRPE; molecular chaperone GrpE D CLI_3468 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CLI_3469 groES; chaperonin, 10 kDa K04078 groES; chaperonin GroES D CLI_3011 dnaJ; chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ D CLI_0254 molecular chaperone, DnaJ family K03686 dnaJ; molecular chaperone DnaJ D CLI_2631 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_1264 iscS-1; cystathionine gamma-lyase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_0144 MRP protein homolog K03593 mrp; ATP-binding protein involved in chromosome partitioning D CLI_3890 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase D CLI_2051 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:cbf02000] D CLI_1143 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D CLI_1680 ABC transporter ATP-binding/permease protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D CLI_2332 ABC transporter, ATP-binding protein K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-] D CLI_1144 ABC transport ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D CLI_1681 ABC transporter ATP-binding/permease protein K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-] D CLI_2021 ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D CLI_1997 putative ABC transporter, ATP-binding/permease protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump D CLI_2020 putative ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D CLI_1996 ABC transporter, ATP-binding/permease protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump D CLI_1392 ABC transporter, ATP-binding protein/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D CLI_3236 ABC transporter, ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D CLI_0384 ABC transporter, ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D CLI_A0024 ABC transporter CbaT K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter D CLI_A0004 hypothetical protein K20344 blpA; ATP-binding cassette, subfamily C, bacteriocin exporter D CLI_0632 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein D CLI_2912 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein D CLI_1155 transporter K15738 uup; ABC transport system ATP-binding/permease protein D CLI_1566 modA; molybdate ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein D CLI_1567 modB; molybdate ABC transporter, permease protein K02018 modB; molybdate transport system permease protein D CLI_1568 putative molybdate ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D CLI_2013 tungstate ABC transporter, tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein D CLI_2012 tupB; tungstate ABC transporter, permease protein K05773 tupB; tungstate transport system permease protein D CLI_2011 tupC; tungstate ABC transporter, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D CLI_1235 ABC transporter, substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D CLI_1236 ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein D CLI_1237 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D CLI_0642 putative spermidine/putrescine ABC transporter, permease protein/spermidine/putrescine-binding protein K11069 potD; spermidine/putrescine transport system substrate-binding protein D CLI_0641 potB; spermidine/putrescine ABC transporter, permease protein PotB K11071 potB; spermidine/putrescine transport system permease protein D CLI_0640 potA; spermidine/putrescine ABC transporter, ATP-binding protein K11072 potA; spermidine/putrescine transport system ATP-binding protein [EC:7.6.2.11] D CLI_1195 putative ABC transporter, solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D CLI_1197 ABC transporter, permease protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D CLI_1196 ABC transporter, permease protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D CLI_1198 ABC transporter, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D CLI_1714 glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D CLI_1713 glycine betaine/L-proline ABC transporter, ATP-binding protein K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D CLI_1465 putative lipoprotein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D CLI_3392 putative lipoprotein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D CLI_3308 putative ABC transporter, substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D CLI_1466 putative ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D CLI_3311 ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D CLI_1467 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D CLI_3386 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D CLI_3310 ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D CLI_1595 carbohydrate uptake ABC transporter, CUT1 family, ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D CLI_0284 lipoprotein, bmp family K07335 bmpA; basic membrane protein A and related proteins D CLI_0286 putative sugar ABC transporter, permease protein K23535 nupB; general nucleoside transport system permease protein D CLI_0287 putative sugar ABC transporter, permease protein K23536 nupC; general nucleoside transport system permease protein D CLI_0285 putative sugar ABC transporter, ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D CLI_0162 putative sugar-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D CLI_1598 carbohydrate uptake ABC transporter, CUT1 family, carbohydrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D CLI_1596 carbohydrate uptake ABC transporter, CUT1 family, permease protein K02025 ABC.MS.P; multiple sugar transport system permease protein D CLI_1597 carbohydrate uptake ABC transporter, CUT1 family, permease protein K02026 ABC.MS.P1; multiple sugar transport system permease protein D CLI_2588 pstS; phosphate ABC transporter, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CLI_0459 phosphate uptake ABC transporter, PhoT family, phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D CLI_0460 phosphate uptake ABC transporter, PhoT family, permease protein K02037 pstC; phosphate transport system permease protein D CLI_2587 pstC; phosphate ABC transporter, permease protein PstC K02037 pstC; phosphate transport system permease protein D CLI_0461 phosphate uptake ABC transporter, PhoT family, permease protein K02038 pstA; phosphate transport system permease protein D CLI_2586 pstA; phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D CLI_2585 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CLI_0462 phosphate uptake ABC transporter, PhoT family, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D CLI_2084 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein D CLI_2083 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K17077 artQ; arginine/lysine/histidine transport system permease protein D CLI_2082 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1] D CLI_0539 putative high-affinity branched-chain amino acid ABC transporter, amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D CLI_0540 high-affinity branched-chain amino acid ABC transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein D CLI_0541 putative high-affinity branched-chain amino acid ABC transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein D CLI_0542 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D CLI_0543 putative high-affinity branched chain amino acid ABC transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D CLI_1176 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein D CLI_1177 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein D CLI_1582 lipoprotein, NLPA family K02073 metQ; D-methionine transport system substrate-binding protein D CLI_1175 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein D CLI_1581 methionine ABC transporter, MUT family, permease protein K02072 metI; D-methionine transport system permease protein D CLI_1174 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D CLI_1580 methionine ABC transporter, MUT family, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D CLI_1243 putative ABC transporter, substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D CLI_0744 putative ABC transporter, substrate-binding protein K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D CLI_1244 ABC transporter, permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein D CLI_0742 ABC transporter, permease protein K05832 K05832; putative tryptophan/tyrosine transport system permease protein D CLI_1245 ABC transporter, ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D CLI_0743 ABC transporter, ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D CLI_1263 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein D CLI_1498 amino acid ABC transporter, amino acid-binding protein K16961 yxeM; putative S-methylcysteine transport system substrate-binding protein D CLI_1262 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein D CLI_1499 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K16962 yxeN; putative S-methylcysteine transport system permease protein D CLI_1500 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K16963 yxeO; putative S-methylcysteine transport system ATP-binding protein D CLI_0531 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D CLI_1509 polar amino acid uptake ABC transporter, PAAT family, amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D CLI_0530 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family K02029 ABC.PA.P; polar amino acid transport system permease protein D CLI_0505 polar amino acid uptake family ABC transporter, PAAT family, ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D CLI_3215 oppA; oligopeptide ABC transporter, periplasmic oligopeptide-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D CLI_3435 bacterial extracellular solute-binding protein, family 5 K15580 oppA; oligopeptide transport system substrate-binding protein D CLI_3214 oligopeptide/dipeptide ABC transporter, permease protein K15581 oppB; oligopeptide transport system permease protein D CLI_3213 oligopeptide/dipeptide ABC transporter, permease protein K15582 oppC; oligopeptide transport system permease protein D CLI_3212 oligopeptide/dipeptide ABC transporter, ATP-binding protein K15583 oppD; oligopeptide transport system ATP-binding protein D CLI_3211 oligopeptide/dipeptide ABC transporter, ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D CLI_1312 putative oligopeptide ABC transporter, oligopeptide-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CLI_0896 methyl-accepting chemotaxis protein/bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CLI_1453 peptide/opine/nickel uptake ABC transporter, PepT family, substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D CLI_1311 putative oligopeptide ABC transporter, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CLI_1454 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02033 ABC.PE.P; peptide/nickel transport system permease protein D CLI_1310 putative oligopeptide ABC transporter, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CLI_1455 peptide/opine/nickel uptake ABC transporter, PepT family, permease protein K02034 ABC.PE.P1; peptide/nickel transport system permease protein D CLI_1456 peptide/opine/nickel uptake ABC transporter, PepT family, ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D CLI_0380 iron compound ABC transporter, iron compound-binding protein K25308 fhuD; ferric hydroxamate/heme transport system substrate-binding protein D CLI_0381 iron compound ABC transporter, permease protein K25288 fhuB; ferric hydroxamate/heme transport system permease protein D CLI_0756 fhuB; ferrichrome ABC transporter, permease protein FhuB K25288 fhuB; ferric hydroxamate/heme transport system permease protein D CLI_0757 fhuG; ferrichrome ABC transporter, permease protein FhuG K25289 fhuG; ferric hydroxamate/heme transport system permease protein D CLI_0382 iron compound ABC transporter, permease protein K25289 fhuG; ferric hydroxamate/heme transport system permease protein D CLI_0758 fhuC; ferrichrome ABC transporter, ATP-binding protein K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16] D CLI_0383 iron compound ABC transporter, ATP-binding protein K25290 fhuA; ferric hydroxamate/heme transport system ATP-binding protein [EC:7.2.2.16] D CLI_1140 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein D CLI_1138 iron chelate uptake ABC transporter, FeCT family, permease protein K25283 yclO; iron-siderophore transport system permease protein D CLI_1137 iron chelate uptake ABC transporter, FeCT family, permease protein K25284 yclN; iron-siderophore transport system permease protein D CLI_1139 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-] D CLI_0374 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D CLI_0755 putative ferrichrome ABC transporter, ferrichrome-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D CLI_0379 iron ABC transporter, iron-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D CLI_1060 putative iron chelate uptake ABC transporter, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D CLI_2953 putative iron chelate uptake ABC transporter, solute-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D CLI_0375 iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D CLI_1059 iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D CLI_2951 iron chelate uptake ABC transporter, FeCT family, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein D CLI_0376 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D CLI_1058 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D CLI_2952 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D CLI_1437 iron chelate uptake ABC transporter, FeCT family, solute-binding protein K25034 btuF; cobalamin transport system substrate-binding protein D CLI_1438 iron chelate uptake ABC transporter, FeCT family, permease protein K25027 btuC; cobalamin transport system permease protein D CLI_1439 iron chelate uptake ABC transporter, FeCT family, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8] D CLI_1461 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein D CLI_1459 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, permease protein K09816 znuB; zinc transport system permease protein D CLI_1460 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20] D CLI_1004 cbiN; cobalt transport protein K02009 cbiN; cobalt/nickel transport protein D CLI_1005 cbiQ; cobalt ABC transporter, permease protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein D CLI_1003 cbiM; cobalamin biosynthesis protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein D CLI_2310 BioY family protein K03523 bioY; biotin transport system substrate-specific component D CLI_0992 BioY family protein K03523 bioY; biotin transport system substrate-specific component D CLI_2037 putative ABC transporter, permease protein K16785 ecfT; energy-coupling factor transport system permease protein D CLI_3630 cobalt transport permease, CbiQ family K16785 ecfT; energy-coupling factor transport system permease protein D CLI_3632 putative cobalt ABC transporter, ATP-binding protein K16786 ecfA1; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CLI_3631 putative cobalt ABC transporter, ATP-binding protein K16787 ecfA2; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CLI_2038 ABC transporter, ATP-binding protein K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-] D CLI_2039 putative ABC transporter, permease protein K16925 ykoE; energy-coupling factor transport system permease protein D CLI_3491 manganese/zinc/iron chelate uptake ABC transporter, Mzt family, substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D CLI_2287 putative sodium extrusion protein NatB K09696 natB; sodium transport system permease protein D CLI_2288 putative sodium extrusion ATP-binding protein NatA K09697 natA; sodium transport system ATP-binding protein [EC:7.2.2.4] D CLI_1664 antibiotic ABC transporter, permease protein K20491 nisE; lantibiotic transport system permease protein D CLI_1665 antibiotic ABC transporter, permease protein K20492 nisG; lantibiotic transport system permease protein D CLI_1663 antibiotic ABC transporter, ATP-binding protein K20490 nisF; lantibiotic transport system ATP-binding protein D CLI_1630 ABC transporter, permease protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein D CLI_1479 putative membrane protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein D CLI_0574 sagI; drug ABC tranporter, ATP-binding/permease protein K25142 lnrN; linearmycin/streptolysin S transport system permease protein D CLI_1478 putative ABC transporter, permease protein K25143 lnrM; linearmycin/streptolysin S transport system permease protein D CLI_0573 sagH; ABC transporter, ATP-binding/permease protein SagH K25143 lnrM; linearmycin/streptolysin S transport system permease protein D CLI_1629 ABC transporter, permease protein K25143 lnrM; linearmycin/streptolysin S transport system permease protein D CLI_0572 sagG; ABC transporter, ATP-binding protein SagG K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein D CLI_1628 ABC transporter, ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein D CLI_1477 ABC transporter, ATP-binding protein K25144 lnrL; linearmycin/streptolysin S transport system ATP-binding protein D CLI_2336 putative membrane protein K19310 bcrB; bacitracin transport system permease protein D CLI_2337 antibiotic ABC transporter, ATP-binding protein K19309 bcrA; bacitracin transport system ATP-binding protein D CLI_0314 efflux ABC transporter, permease protein K11632 bceB; bacitracin transport system permease protein D CLI_1489 peptide ABC transporter, Pep4E family, permease protein K11632 bceB; bacitracin transport system permease protein D CLI_0313 ABC transporter, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein D CLI_1488 peptide ABC transporter, Pep4E family, ATP-binding protein K11631 bceA; bacitracin transport system ATP-binding protein D CLI_0392 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein D CLI_1494 peptide ABC transporter, Pep4E family, permease protein K11636 yxdM; putative ABC transport system permease protein D CLI_0391 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein D CLI_1493 peptide ABC transporter, Pep4E family, ATP-binding protein K11635 yxdL; putative ABC transport system ATP-binding protein D CLI_2838 ABC transporter, permease protein K16919 ytrC_D; acetoin utilization transport system permease protein D CLI_2839 ABC transporter, ATP-binding protein K16921 ytrB; acetoin utilization transport system ATP-binding protein D CLI_3574 putative cell division protein FtsX K09811 ftsX; cell division transport system permease protein D CLI_3575 putative cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D CLI_0797 putative drug resistance ABC-2 type transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CLI_0864 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CLI_1273 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CLI_3526 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CLI_0725 ABC transporter, permease protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CLI_2335 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CLI_2971 putative membrane protein K01992 ABC-2.P; ABC-2 type transport system permease protein D CLI_0638 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_2972 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_1289 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_0724 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_0860 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_0707 bacitracin transport ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_0796 ABC Transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_0929 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_1328 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_0863 bacitracin ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_3527 bacitracin ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_1272 bcrA; bacitracin ABC transporter, ATP-binding protein BcrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_2185 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_1994 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_1053 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_3200 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_3520 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D CLI_2018 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_0666 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_0989 ABC transporter, ATP-binding/permease protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_0870 putative ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_0970 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_1398 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_1592 efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_0143 putative macrolide efflux ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_2193 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_0348 peptide ABC transporter, Pep4E family, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_2186 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_1431 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_0783 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_3238 ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein D CLI_1397 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_0969 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_0667 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_1591 peptide ABC transporter, Pep4E family, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_2017 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_2194 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_1309 putative oligopeptide ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_0142 putative macrolide efflux ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_1432 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_0869 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_0782 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_3237 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_0347 peptide ABC transporter, Pep4E family, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D CLI_1852 transporter, monovalent cation:proton antiporter-2 (CPA2) family K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2 D CLI_0431 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D CLI_0129 MATE efflux family protein K26939 norM; MATE family, multidrug efflux pump D CLI_2893 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CLI_2014 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CLI_2170 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CLI_2892 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CLI_2831 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CLI_2644 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CLI_1192 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CLI_0377 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump D CLI_1693 major facilitator family transporter K08177 oxlT; MFS transporter, OFA family, oxalate/formate antiporter D CLI_2171 transporter, major facilitator family K03449 MFS.CP; MFS transporter, CP family, cyanate transporter D CLI_1162 glpT; glycerol-3-phosphate transporter K02445 glpT; MFS transporter, OPA family, glycerol-3-phosphate transporter D CLI_3620 ptsI; phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D CLI_2453 ptsH; phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr D CLI_0344 PTS system, glucose family, EIIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0363 PTS system, glucose/maltose-specific, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_0352 PTS system, glucose/glucoside family, IIA component K02777 crr; sugar PTS system EIIA component [EC:2.7.1.-] D CLI_1421 ptsG; PTS system, glucose-specific, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CLI_2804 PTS system, glucose family, IIABC component K20118 ptsG; glucose PTS system EIICBA or EIICB component [EC:2.7.1.199] D CLI_2891 nagE; PTS system, N-acetylglucosamine-specific, IIBC component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193] D CLI_0341 PTS system, maltose/glucose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_0361 PTS system, glucose/maltose-specfic, IIBC component K02791 malX; maltose/glucose PTS system EIICB component [EC:2.7.1.199 2.7.1.208] D CLI_1685 PTS system, glucose/glucoside family, IIBC component K20108 malT; maltose PTS system EIICB or EIICBA component [EC:2.7.1.208] D CLI_1444 phosphotransferase system domain protein K02810 scrA; sucrose PTS system EIIBCA or EIIBC component [EC:2.7.1.211] D CLI_0962 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CLI_2903 PTS system, beta-glucoside-specific family, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CLI_0731 PTS system, beta-glucoside-specific, IIABC component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-] D CLI_2053 treP; PTS system, trehalose-specific IIBC component K02819 treB; trehalose PTS system EIIBC or EIIBCA component [EC:2.7.1.201] D CLI_0350 PTS system, glucose/glucoside family, IIBC component K02750 glvC; alpha-glucoside PTS system EIICB component [EC:2.7.1.208 2.7.1.-] D CLI_3532 PTS system, lactose/cellobiose-specific family, IIA component K02759 celC; cellobiose PTS system EIIA component [EC:2.7.1.196 2.7.1.205] D CLI_3533 PTS system, lactose/cellobiose-specific family, IIB component K02760 celA; cellobiose PTS system EIIB component [EC:2.7.1.196 2.7.1.205] D CLI_3535 PTS system, lactose/cellobiose family, IIC component K02761 celB; cellobiose PTS system EIIC component D CLI_3597 PTS system, glucitol/sorbitol-specific IIA component K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D CLI_3598 PTS system, glucitol/sorbitol-specific, IIBC component K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D CLI_3599 PTS system, glucitol/sorbitol-specific, IIC component K02783 srlA; glucitol/sorbitol PTS system EIIC component D CLI_2199 putative PTS system, L-ascorbate family, IIA component K02821 ulaC; ascorbate PTS system EIIA or EIIAB component [EC:2.7.1.194] D CLI_2198 putative PTS system, L-Ascorbate family, IIB component K02822 ulaB; ascorbate PTS system EIIB component [EC:2.7.1.194] D CLI_2197 putative PTS system, L-ascorbate family, IIC component K03475 ulaA; ascorbate PTS system EIIC component D CLI_2835 glycerol uptake facilitator protein K02440 glpF; glycerol uptake facilitator D CLI_1046 formate/nitrite transporter family protein K02598 nirC; nitrite transporter D CLI_0633 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D CLI_3876 mechanosensitive ion channel family protein K22044 ybiO; moderate conductance mechanosensitive channel D CLI_1211 mgtE; magnesium transporter K06213 mgtE; magnesium transporter D CLI_2276 motA-1; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D CLI_2719 motA-2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D CLI_2275 motB-1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D CLI_2718 motB-2; chemotaxis motB protein K02557 motB; chemotaxis protein MotB D CLI_0106 transporter, CorA metal ion transporter family K03284 corA; magnesium transporter D CLI_2669 putative magnesium and cobalt transport protein CorA K03284 corA; magnesium transporter D CLI_0819 mercuric transport protein periplasmic component K08364 merP; periplasmic mercuric ion binding protein D CLI_2965 transporter, HlyC/CorC family K03699 tlyC; magnesium and cobalt exporter, CNNM family D CLI_2985 CBS/transporter-associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D CLI_0450 putative cell surface protein K21449 ata; trimeric autotransporter adhesin D CLI_0395 lrgA family protein K06518 cidA; holin-like protein D CLI_0322 lysP; lysine-specific permease K11733 lysP; lysine-specific permease D CLI_1669 arcD; arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease D CLI_2531 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D CLI_0414 amino acid permease family protein K20265 gadC; glutamate:GABA antiporter D CLI_2041 spore germination protein K06311 yndE; spore germination protein D CLI_2043 spore germination protein K06311 yndE; spore germination protein D CLI_2045 spore germination protein K06311 yndE; spore germination protein D CLI_0179 spore germination protein K06311 yndE; spore germination protein D CLI_0196 ZIP transporter family protein K07238 TC.ZIP; zinc transporter, ZIP family D CLI_1259 zinc transporter, ZIP family K07238 TC.ZIP; zinc transporter, ZIP family D CLI_0981 drug/metabolite transporter, DMT family K08978 TC.BAT1; bacterial/archaeal transporter family protein D CLI_1625 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_0944 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_1626 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_3814 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_3549 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_0949 putative membrane protein K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein D CLI_2253 gntP; gluconate permease K03299 TC.GNTP; gluconate:H+ symporter, GntP family D CLI_0319 kdgT; 2-keto-3-deoxygluconate transporter K02526 kdgT; 2-keto-3-deoxygluconate permease D CLI_1087 lctP; L-lactate permease K03303 lutP; lactate permease D CLI_1217 choline/carnitine/betaine transporter K05020 opuD; glycine betaine transporter D CLI_2050 transporter, monovalent cation:proton antiporter-2 (CPA2) family K11105 cvrA; potassium/hydrogen antiporter D CLI_0433 transporter, monovalent cation:proton antiporter-2 (CPA2) family K11105 cvrA; potassium/hydrogen antiporter D CLI_2906 transporter, monovalent cation:proton antiporter-2 (CPA2) family K26730 napA; Na+:H+ antiporter D CLI_1412 trkH; Trk system potassium uptake protein TrkH K03498 trkH; trk/ktr system potassium uptake protein D CLI_3192 potassium uptake protein, TrkH family K03498 trkH; trk/ktr system potassium uptake protein D CLI_1411 trkA; Trk system potassium uptake protein TrkA K03499 trkA; trk/ktr system potassium uptake protein D CLI_3191 potassium uptake protein, TrkA family K03499 trkA; trk/ktr system potassium uptake protein D CLI_2126 cytosine permease K10974 codB; cytosine permease D CLI_1562 uracil permease K02824 uraA; uracil permease D CLI_2943 xanthine/uracil permease family protein K24206 uacT; uric acid transporter D CLI_3344 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CLI_1736 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CLI_2073 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CLI_2957 xanthine/uracil permease family protein K06901 pbuG; adenine/guanine/hypoxanthine permease D CLI_0612 chromate transporter protein K07240 chrA; chromate transporter D CLI_0613 chromate transport protein K07240 chrA; chromate transporter D CLI_3523 sulfate permease, SulP family K03321 TC.SULP; sulfate permease, SulP family D CLI_3626 Na/Pi-cotransporter family protein/PhoU family protein K03324 yjbB; phosphate:Na+ symporter D CLI_0835 arsA; arsenical pump-driving ATPase ArsA K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-] D CLI_0836 arsB; arsenical-resistance protein K03325 ACR3; arsenite transporter D CLI_1518 spoVB-1; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D CLI_1519 polysaccharide biosynthesis family protein K06409 spoVB; stage V sporulation protein B D CLI_3756 spoVB-2; stage V sporulation protein B K06409 spoVB; stage V sporulation protein B D CLI_3154 mviN; integral membrane protein MviN K03980 murJ; putative peptidoglycan lipid II flippase D CLI_2635 auxin efflux carrier family protein K24180 mleP; malate permease and related proteins D CLI_0240 putative membrane protein K23675 fmnP; riboflavin transporter D CLI_0634 probable proton-coupled thiamine transporter YuaJ K16789 thiT; thiamine transporter D CLI_2684 putative membrane protein K16788 niaX; niacin transporter D CLI_1544 cell cycle protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW D CLI_1375 putative membrane protein K23242 mntP; manganese efflux pump family protein D CLI_1368 conserved domain protein K15383 K15383; MtN3 and saliva related transmembrane protein D CLI_1369 conserved domain protein K15383 K15383; MtN3 and saliva related transmembrane protein D CLI_0335 putative cytochrome c-type biogenesis protein CcdA K06196 ccdA; cytochrome c-type biogenesis protein D CLI_1814 putative cytochrome c-type biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D CLI_A0023 putative bacteriocin ABC transporter, bacteriocin-binding protein K20345 blpB; membrane fusion protein, peptide pheromone/bacteriocin exporter D CLI_2752 capsular exopolysaccharide family protein K00903 epsB; protein-tyrosine kinase [EC:2.7.10.3] D CLI_2754 capsular polysaccharide biosynthsis protein K19420 epsA; protein tyrosine kinase modulator D CLI_1115 putative ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D CLI_1116 feoA family protein K04758 feoA; ferrous iron transport protein A D CLI_1169 feoA-2; ferrous ion transport protein A K04758 feoA; ferrous iron transport protein A D CLI_0897 feoA-1; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A D CLI_1117 feoB-2; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D CLI_1168 feoB-3; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B D CLI_0148 mgtC family protein K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein C 02044 Secretion system [BR:cbf02044] D CLI_1409 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CLI_1971 putative pilin K02650 pilA; type IV pilus assembly protein PilA D CLI_1973 general secretion pathway protein E K02652 pilB; type IV pilus assembly protein PilB D CLI_1972 bacterial type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC D CLI_1965 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN D CLI_2601 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT D CLI_1551 YGGT family protein K02221 yggT; YggT family protein D CLI_3032 putative comE operon protein 1 K02237 comEA; competence protein ComEA D CLI_0201 cytidine/deoxycytidylate deaminase family protein K01493 comEB; dCMP deaminase [EC:3.5.4.12] D CLI_3022 ComEC/Rec2 family protein K02238 comEC; competence protein ComEC D CLI_0500 metallo-beta-lactamase family protein K02238 comEC; competence protein ComEC D CLI_0234 ComF protein homolog K02242 comFC; competence protein ComFC D CLI_2712 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CLI_0242 conserved hypothetical protein K04061 flhB2; flagellar biosynthesis protein D CLI_2727 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D CLI_2726 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CLI_2793 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CLI_2716 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D CLI_2715 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CLI_2714 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CLI_2713 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB D CLI_3246 TraG/TraD family protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D CLI_0236 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D CLI_3122 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D CLI_3677 secE; preprotein translocase, SecE subunit K03073 secE; preprotein translocase subunit SecE D CLI_3121 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D CLI_0296 secG; preprotein translocase, SecG subunit K03075 secG; preprotein translocase subunit SecG D CLI_3643 secY; preprotein translocase, SecY subunit K03076 secY; preprotein translocase subunit SecY D CLI_2505 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D CLI_2507 ftsY; signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D CLI_3126 yajC; preprotein translocase, YajC subunit K03210 yajC; preprotein translocase subunit YajC D CLI_3890 oxaA; membrane protein OxaA K03217 yidC; YidC/Oxa1 family membrane protein insertase C 02042 Bacterial toxins [BR:cbf02042] D CLI_0851 boNT_F; botulinum neurotoxin type F, BoNT/F K06011 boNT; botulinum neurotoxin [EC:3.4.24.69] D CLI_0850 ntnH; botulinum neurotoxin type F, nontoxic-nonhemagglutinin component, NTNH K16623 ntnH; botulinum neurotoxin type non-toxic component D CLI_1602 C4-dicarboxylate transporter/malic acid transport protein K11041 eta; exfoliative toxin A/B D CLI_2965 transporter, HlyC/CorC family K03699 tlyC; magnesium and cobalt exporter, CNNM family D CLI_2985 CBS/transporter-associated domain protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D CLI_0566 bacteriocin protoxin, streptolysin S family K11046 sagA; streptolysin S associated protein D CLI_1535 hlyIII; hemolysin III K11068 hlyIII; hemolysin III D CLI_2699 putative phospholipase C K01114 plc; phospholipase C [EC:3.1.4.3] D CLI_1698 collagenase K01387 colA; microbial collagenase [EC:3.4.24.3] D CLI_1984 cloSI; clostripain K08587 cloSI; clostripain [EC:3.4.22.8] C 02022 Two-component system [BR:cbf02022] D CLI_2589 putative phosphate regulon sensor protein K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D CLI_2590 putative phosphate regulon DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CLI_0424 DNA-binding response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP D CLI_0369 sensor histidine kinase K07650 cssS; two-component system, OmpR family, sensor histidine kinase CssS [EC:2.7.13.3] D CLI_0368 DNA-binding response regulator K07770 cssR; two-component system, OmpR family, response regulator CssR D CLI_1055 DNA-binding response regulator K07668 vicR; two-component system, OmpR family, response regulator VicR D CLI_0312 sensor histidine kinase K19081 braS; two-component system, OmpR family, sensor histidine kinase BraS/BceS [EC:2.7.13.3] D CLI_0311 DNA-binding response regulator K19082 braR; two-component system, OmpR family, response regulator protein BraR/BceR D CLI_1492 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3] D CLI_0389 sensor histidine kinase K11633 yxdK; two-component system, OmpR family, sensor histidine kinase YxdK [EC:2.7.13.3] D CLI_1491 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ D CLI_0388 DNA-binding response regulator K11634 yxdJ; two-component system, OmpR family, response regulator YxdJ D CLI_2034 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CLI_2035 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR D CLI_3525 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR D CLI_0437 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR D CLI_2372 sensor histidine kinase K18940 arlS; two-component system, OmpR family, sensor histidine kinase ArlS [EC:2.7.13.3] D CLI_2373 DNA-binding response regulator K18941 arlR; two-component system, OmpR family, response regulator ArlR D CLI_1990 sensor histidine kinase K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D CLI_1667 putative antibiotic transporter sensor protein K20487 nisK; two-component system, OmpR family, lantibiotic biosynthesis sensor histidine kinase NisK/SpaK [EC:2.7.13.3] D CLI_1666 putative antibiotic transporter response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D CLI_1991 DNA-binding response regulator K20488 nisR; two-component system, OmpR family, lantibiotic biosynthesis response regulator NisR/SpaR D CLI_0862 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D CLI_0990 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D CLI_1936 spo0A; sporulation transcription factor Spo0A K07699 spo0A; two-component system, response regulator, stage 0 sporulation protein A D CLI_0320 putative sensor histidine kinase K02476 K02476; two-component system, CitB family, sensor kinase [EC:2.7.13.3] D CLI_0321 response regulator K02475 K02475; two-component system, CitB family, response regulator D CLI_1271 sensor histidine kinase K07706 agrC; two-component system, LytTR family, sensor histidine kinase AgrC [EC:2.7.13.3] D CLI_1269 DNA-binding response regulator, LytTr family K07707 agrA; two-component system, LytTR family, response regulator AgrA D CLI_3479 sensor histidine kinase K02478 K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3] D CLI_3478 DNA-binding response regulator, LytTr family K02477 K02477; two-component system, LytTR family, response regulator D CLI_2798 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CLI_1080 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CLI_2796 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CLI_2800 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CLI_1772 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CLI_0694 sensor histidine kinase K07717 glnK; two-component system, sensor histidine kinase GlnK [EC:2.7.13.3] D CLI_0693 response regulator K07719 glnL; two-component system, response regulator GlnL C 02035 Bacterial motility proteins [BR:cbf02035] D CLI_2798 cheA; chemotaxis protein CheA K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D CLI_2802 cheW; chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CLI_2795 putative chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D CLI_1782 cheX; chemotaxis protein CheX K03409 cheX; chemotaxis protein CheX D CLI_2797 cheC; chemotaxis protein CheC K03410 cheC; chemotaxis protein CheC D CLI_2801 cheD; chemotaxis protein CheD K03411 cheD; chemotaxis protein CheD [EC:3.5.1.44] D CLI_2799 cheR; chemotaxis protein methyltransferase CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D CLI_2800 cheB; protein-glutamate methylesterase CheB K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D CLI_1080 response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CLI_2796 cheY; chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D CLI_1772 cheV; chemotaxis protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV D CLI_0523 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2861 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0474 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0631 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1768 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1452 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1606 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0762 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1641 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_0807 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2878 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2855 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1983 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_3351 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_1739 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2067 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D CLI_2727 fliH; flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH D CLI_2726 fliI; flagellar protein export ATPase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D CLI_2725 flagellar protein FliJ K02413 fliJ; flagellar protein FliJ D CLI_2716 fliO; flagellar biosynthetic protein FliO K02418 fliO; flagellar protein FliO/FliZ D CLI_2715 fliP; flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D CLI_2714 fliQ; flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D CLI_2713 flagellar biosynthetic protein FliR/FlhB K13820 fliR-flhB; flagellar biosynthesis protein FliR/FlhB D CLI_2712 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D CLI_2728 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D CLI_2794 fliM; flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D CLI_2793 fliN; flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D CLI_2717 fliL; flagellar basal body-associated protein FliL K02415 fliL; flagellar protein FliL D CLI_2730 fliE; flagellar hook-basal body complex protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D CLI_2724 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK D CLI_2732 flgB; flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D CLI_2731 flgC; flagellar basal-body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D CLI_2723 flgD; flagellar hook capping protein K02389 flgD; flagellar basal-body rod modification protein FlgD D CLI_2705 flagellar basal body rod protein K02391 flgF; flagellar basal-body rod protein FlgF D CLI_2704 flagellar basal body rod protein K02392 flgG; flagellar basal-body rod protein FlgG D CLI_2721 flgE; flagellar hook protein flgE K02390 flgE; flagellar hook protein FlgE D CLI_2790 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D CLI_2789 flgL; flagellar hook-associated protein 3 K02397 flgL; flagellar hook-associated protein 3 FlgL D CLI_2781 flagellin K02406 fliC; flagellin D CLI_2760 fliC; flagellin K02406 fliC; flagellin D CLI_2733 flagellin K02406 fliC; flagellin D CLI_0308 flagellin protein K02406 fliC; flagellin D CLI_2783 fliD; Flagellar hook-associated protein 2 K02407 fliD; flagellar hook-associated protein 2 D CLI_2784 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS D CLI_2708 fliA; RNA polymerase sigma factor for flagellar operon FliA K02405 fliA; RNA polymerase sigma factor FliA D CLI_2276 motA-1; chemotaxis protein MotA K02556 motA; chemotaxis protein MotA D CLI_2719 motA-2; chemotaxis MotA protein K02556 motA; chemotaxis protein MotA D CLI_2275 motB-1; chemotaxis MotB protein K02557 motB; chemotaxis protein MotB D CLI_2718 motB-2; chemotaxis motB protein K02557 motB; chemotaxis protein MotB D CLI_2788 conserved hypothetical protein K13626 fliW; flagellar assembly factor FliW D CLI_2792 regulator of flagellin synthesis FlgM K02398 flgM; negative regulator of flagellin synthesis FlgM D CLI_2786 flaG family protein K06603 flaG; flagellar protein FlaG D CLI_2720 flagellar protein FlbD K02385 flbD; flagellar protein FlbD D CLI_2711 flhF; flagellar biosynthesis protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF D CLI_2710 flhG; flagellar biosynthesis protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG D CLI_2601 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT D CLI_1971 putative pilin K02650 pilA; type IV pilus assembly protein PilA D CLI_1973 general secretion pathway protein E K02652 pilB; type IV pilus assembly protein PilB D CLI_1972 bacterial type II secretion system protein F K02653 pilC; type IV pilus assembly protein PilC D CLI_1409 type IV leader peptidase family protein K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] D CLI_1965 hypothetical protein K02663 pilN; type IV pilus assembly protein PilN C 03037 Cilium and associated proteins [BR:cbf03037] D CLI_1852 transporter, monovalent cation:proton antiporter-2 (CPA2) family K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2 C 04812 Cytoskeleton proteins [BR:cbf04812] D CLI_0218 mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins D CLI_3056 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CLI_2597 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CLI_2598 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA D CLI_3052 minC; septum site-determining protein MinC K03610 minC; septum site-determining protein MinC D CLI_3051 minD; septum site-determining protein MinD K03609 minD; septum site-determining protein MinD D CLI_3050 minE; cell division topological specificity factor MinE K03608 minE; cell division topological specificity factor D CLI_3884 soj; sporulation initiation inhibitor protein soj K03496 parA; chromosome partitioning protein D CLI_3883 stage 0 sporulation protein J K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CLI_3885 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:cbf04147] D CLI_2051 hsp90; heat shock protein K04079 HSP90A; molecular chaperone HtpG D CLI_0295 eno; phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D CLI_0291 gap-1; glyceraldehyde-3-phosphate dehydrogenase, type I K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D CLI_0292 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D CLI_3556 pykA; pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D CLI_1305 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D CLI_3468 groL; chaperonin GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D CLI_3012 dnaK; chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK D CLI_3449 pgi; glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D CLI_3466 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D CLI_3665 tuf-1; translation elongation factor Tu K02358 tuf; elongation factor Tu D CLI_3679 tuf-2; translation elongation factor Tu K02358 tuf; elongation factor Tu D CLI_3007 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CLI_1407 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D CLI_1599 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27] D CLI_3339 thiolase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D CLI_3642 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D CLI_3119 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CLI_2072 phosphoribosyl transferase domain protein K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D CLI_2735 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D CLI_2736 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D CLI_2942 hydA; dihydropyrimidinase K01464 DPYS; dihydropyrimidinase [EC:3.5.2.2] D CLI_2834 glpK; glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D CLI_3785 putative glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D CLI_1010 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D CLI_1213 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D CLI_2931 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D CLI_1711 acoL; TPP-dependent acetoin dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_0769 lpdA; dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D CLI_3336 electron transfer flavoprotein, alpha subunit/FixB family protein K03522 fixB; electron transfer flavoprotein alpha subunit D CLI_0293 tpiA; triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] C 02048 Prokaryotic defense system [BR:cbf02048] D CLI_2222 cas6; CRISPR-associated protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-] D CLI_2221 cmr1; CRISPR-associated RAMP protein, Cmr1 family K07061 cmr1; CRISPR-associated protein Cmr1 D CLI_2220 crm2; CRISPR-associated protein, Crm2 family K19076 cmr2; CRISPR-associated protein Cmr2 D CLI_2219 cmr3; CRISPR-associated protein, Cmr3 family K09127 cmr3; CRISPR-associated protein Cmr3 D CLI_2217 cmr4; CRISPR-associated RAMP protein, Cmr4 family K09000 cmr4; CRISPR-associated protein Cmr4 D CLI_2216 cmr5; CRISPR-associated protein, Cmr5 family K19141 cmr5; CRISPR-associated protein Cmr5 D CLI_2215 cmr6; CRISPR-associated RAMP protein, Cmr6 family K19142 cmr6; CRISPR-associated protein Cmr6 D CLI_3149 modification methylase family protein K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D CLI_3290 conserved domain protein K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2433 C-5 cytosine-specific DNA methylase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_2130 DNA (cytosine-5-)-methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CLI_3273 conserved hypothetical protein K07451 mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-] D CLI_2136 hypothetical protein K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC D CLI_3580 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D CLI_0614 PemK family protein K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D CLI_3581 conserved hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI D CLI_2597 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D CLI_0218 mbl protein K03569 mreB; rod shape-determining protein MreB and related proteins D CLI_3056 rod shape-determining protein MreB K03569 mreB; rod shape-determining protein MreB and related proteins D CLI_2821 DNA topoisomerase, GyrA/ParC subunit family K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D CLI_2822 DNA topoisomerase, GyrB/ParE subunit family K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D CLI_2631 iscS-2; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D CLI_1264 iscS-1; cystathionine gamma-lyase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels [BR:cbf04040] C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules [BR:cbf04090] C 01504 Antimicrobial resistance genes [BR:cbf01504] D CLI_0647 acetyltransferase, GNAT family K18815 aac6-I; aminoglycoside 6'-N-acetyltransferase I [EC:2.3.1.82] D CLI_2145 putative tetracycline resistance protein K18220 tetM; ribosomal protection tetracycline resistance protein D CLI_2911 florfenicol/chloramphenicol resistance protein K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224] D CLI_0632 ABC transporter, ATP-binding protein K18231 msr; macrolide transport system ATP-binding/permease protein D CLI_2912 drug resistance ABC transporter, RA2 family, ATP-binding protein K19350 lsa; lincosamide and streptogramin A transport system ATP-binding/permease protein D CLI_0324 streptogramin A acetyltransferase K18234 vat; virginiamycin A acetyltransferase [EC:2.3.1.-] D CLI_0699 chloramphenicol acetyltransferase family protein K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28] D CLI_2087 catB; chloramphenicol acetyltransferase K19271 catA; chloramphenicol O-acetyltransferase type A [EC:2.3.1.28] D CLI_2252 fosfomycin resistance family protein K21252 fosX; fosfomycin resistance protein FosX D CLI_0745 blaI; penicillinase repressor K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CLI_2034 sensor histidine kinase K18345 vanSB; two-component system, OmpR family, sensor histidine kinase VanS [EC:2.7.13.3] D CLI_2035 DNA-binding response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR D CLI_1121 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_0689 D-alanyl-D-alanine carboxypeptidase family protein K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] D CLI_3525 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR D CLI_0437 DNA-binding response regulator K18349 vanRC; two-component system, OmpR family, response regulator VanR C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:cbf00537] D CLI_1305 dipeptidase family protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:cbf03100] D CLI_0492 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CLI_0018 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CLI_3713 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D CLI_0037 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3401 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3414 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3426 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_0041 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3396 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D CLI_3704 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CLI_0499 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CLI_3702 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D CLI_3205 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CLI_3851 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CLI_3951 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CLI_3948 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D CLI_0104 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CLI_3201 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D CLI_0251 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CLI_3409 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CLI_3422 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D CLI_3855 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CLI_3848 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CLI_0562 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CLI_3950 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D CLI_3202 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3404 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3417 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3397 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3403 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3416 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3428 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3681 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D CLI_3411 tRNA-His K14226 tRNA-His; tRNA His D CLI_3424 tRNA-His K14226 tRNA-His; tRNA His D CLI_0493 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CLI_3710 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D CLI_3741 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3747 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3405 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3418 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3103 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3065 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D CLI_3413 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_3400 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_0066 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_3420 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_3407 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_0074 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D CLI_0016 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3737 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3743 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3739 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3740 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3745 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3946 tRNA-Met K14230 tRNA-Met; tRNA Met D CLI_3203 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CLI_3896 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CLI_3895 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D CLI_3398 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CLI_3429 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CLI_3771 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D CLI_0030 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_0035 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_0033 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_0028 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_0046 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D CLI_3680 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_3897 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_0227 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_3850 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_3947 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D CLI_3487 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D CLI_0229 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CLI_3898 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D CLI_3207 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_3853 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_3846 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_0226 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_3949 tRNA-Val K14237 tRNA-Val; tRNA Val D CLI_3027 tRNA-Sec K14238 tRNA-Sec; tRNA Sec D CLI_3711 rrsH; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_3722 rrsI; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0077 rrsD; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0490 rrsG; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0068 rrsC; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0089 rrsE; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0060 rrsB; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0009 rrsA; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0098 rrsF; 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D CLI_0012 rrlA; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0071 rrlI-1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0063 rrlB; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0101 rrlH-1; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0092 rrlE; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0496 rrlG; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_3719 rrlI-2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_3707 rrlH-2; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0080 rrlD; 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D CLI_0013 rrfA; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0072 rrfC; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0081 rrfD; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_3718 rrfI; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_3706 rrfH; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0064 rrfB; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0497 rrfG; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0102 rrfF; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_0093 rrfE; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D CLI_3894 srpB; bacterial signal recognition particle RNA K01983 ffs; SRP RNA D CLI_3935 bacterial RNase P class A K01978 rnpB; M1 RNA D CLI_3904 CLI_3904 K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D CLI_2255 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase K22024 pdxA2; 4-phospho-D-threonate 3-dehydrogenase / 4-phospho-D-erythronate 3-dehydrogenase [EC:1.1.1.408 1.1.1.409] D CLI_1707 acoA; TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D CLI_1708 acoB; TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D CLI_0333 xanthine dehydrogenase family protein, iron-sulfur-binding subunit K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D CLI_3458 acyl-CoA dehydrogenase family protein K24016 acdA; 3-(aryl)acrylate reductase [EC:1.3.8.15] D CLI_0595 ceo; N(5)-(carboxyethyl)ornithine synthase K00298 ceo; N5-(carboxyethyl)ornithine synthase [EC:1.5.1.24] D CLI_2683 metallo-beta-lactamase family protein/flavodoxin K22405 fprA1_2; NADH oxidase (H2O-forming) [EC:1.6.3.4] D CLI_1487 putative methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D CLI_1988 msrA; methionine-S-sulfoxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D CLI_2330 msrB; methionine-R-sulfoxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D CLI_0581 putative thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D CLI_0938 conserved hypothetical protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24] D CLI_2351 putative flavohemoprotein K05916 hmp; nitric oxide dioxygenase [EC:1.14.12.17] D CLI_3506 superoxide reductase K05919 dfx; superoxide reductase [EC:1.15.1.2] D CLI_1779 ferritin family protein K02217 ftnA; ferritin [EC:1.16.3.2] D CLI_1721 oxidoreductase, NAD/FAD-binding K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D CLI_3475 oxidoreductase, NAD-binding K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D CLI_0832 arsenate reductase ArsC K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D CLI_0844 arsenate reductase homolog K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D CLI_1346 grdA; glycine reductase complex component A, selenocysteine-containing K10670 grdA; glycine/sarcosine/betaine reductase complex component A [EC:1.21.4.2 1.21.4.3 1.21.4.4] D CLI_1342 glycine reductase complex component B subunits alpha and beta K10671 grdE; glycine reductase complex component B subunit alpha and beta [EC:1.21.4.2] D CLI_1343 grdB; glycine reductase complex component B, gamma subunit, selenocysteine-containing K10672 grdB; glycine reductase complex component B subunit gamma [EC:1.21.4.2] D CLI_1348 grdD; glycine reductase complex component C, alpha subunit K21576 grdD; glycine/sarcosine/betaine reductase complex component C subunit alpha [EC:1.21.4.2 1.21.4.3 1.21.4.4] D CLI_1347 grdC; glycine reductase complex component C, beta subunit K21577 grdC; glycine/sarcosine/betaine reductase complex component C subunit beta [EC:1.21.4.2 1.21.4.3 1.21.4.4] D CLI_1084 putative anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D CLI_0150 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein K04068 nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4] D CLI_3353 pflA; pyruvate formate-lyase activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CLI_3323 glycyl-radical enzyme activating family protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CLI_3805 radical SAM domain protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CLI_3779 radical SAM domain protein K04070 pflX; putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] D CLI_2160 glycyl-radical enzyme activating family protein K20037 cutD; choline trimethylamine-lyase activating enzyme [EC:1.97.1.-] D CLI_0940 nitroreductase family protein K15976 K15976; putative NAD(P)H nitroreductase [EC:1.-.-.-] D CLI_0696 cfa; cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D CLI_1564 putative methyltransferase K07444 ypsC; putative N6-adenine-specific DNA methylase [EC:2.1.1.-] D CLI_2205 O-acetyltransferase family protein K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18] D CLI_1204 maa; maltose transacetylase K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D CLI_1013 bacterial transferase, hexapeptide repeat family K00661 maa; maltose O-acetyltransferase [EC:2.3.1.79] D CLI_2305 acetyltransferase, GNAT family K03826 yiaC; putative acetyltransferase [EC:2.3.1.-] D CLI_1064 acetyltransferase, GNAT family K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D CLI_2345 putative protein-glutamine gamma-glutamyltransferase K00686 tgl; protein-glutamine gamma-glutamyltransferase [EC:2.3.2.13] D CLI_3160 glycosyl transferase, group 1 family K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-] D CLI_0160 conserved hypothetical protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143] D CLI_3347 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D CLI_0449 apbE family protein K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D CLI_2256 conserved hypothetical protein K22129 dtnK; D-threonate/D-erythronate kinase [EC:2.7.1.219 2.7.1.220] D CLI_2059 pfkB; 1-phosphofructokinase K25602 tagK; D-tagatose-1-phosphate kinase [EC:2.7.1.234] D CLI_2557 DAK2 domain protein K07030 fakA; fatty acid kinase [EC:2.7.2.18] D CLI_3856 conserved hypothetical protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D CLI_2434 polA-1; DNA-directed DNA polymerase I K02334 dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7] D CLI_3694 putative DNA-binding protein K07067 disA; diadenylate cyclase [EC:2.7.7.85] D CLI_3613 conserved hypothetical protein TIGR00159 K18672 dacA; diadenylate cyclase [EC:2.7.7.85] D CLI_1279 conserved hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108] D CLI_2645 putative phosphoenolpyruvate synthase K22579 rph; rifampicin phosphotransferase [EC:2.7.9.6] D CLI_3147 spoIIAB; anti-sigma F factor K06379 spoIIAB; stage II sporulation protein AB (anti-sigma F factor) [EC:2.7.11.1] D CLI_2671 hprK; HPr(Ser) kinase/phosphatase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D CLI_3697 ATP:guanido phosphotransferase domain protein K19405 mcsB; protein arginine kinase [EC:2.7.14.1] D CLI_2243 putative hydroxyacyl-CoA:R-2-hydroxyglutaryl-CoA transferase K20882 hadA; (R)-2-hydroxy-4-methylpentanoate CoA-transferase [EC:2.8.3.24] D CLI_2297 putative phosphatase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D CLI_1241 thioesterase family protein K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D CLI_3736 spoIIE; stage II sporulation protein E K06382 spoIIE; stage II sporulation protein E [EC:3.1.3.16] D CLI_2753 exopolysaccharide biosynthesis protein K01104 E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48] D CLI_2667 conserved hypothetical protein K07053 E3.1.3.97; 3',5'-nucleoside bisphosphate phosphatase [EC:3.1.3.97] D CLI_3868 DHH family protein K22927 gdpP; cyclic-di-AMP phosphodiesterase [EC:3.1.4.59] D CLI_3002 putative hydrolase K07037 pgpH; cyclic-di-AMP phosphodiesterase PgpH [EC:3.1.4.-] D CLI_0134 hydrolase, TatD family K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D CLI_0136 primase homolog K05985 rnmV; ribonuclease M5 [EC:3.1.26.8] D CLI_3252 putative N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_2909 prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D CLI_2343 def-1; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CLI_2571 def-2; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CLI_0956 putative peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CLI_2686 def-3; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D CLI_0288 polysaccharide deacetylase family protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104] D CLI_2772 N-acetylglucosaminylphosphatidylinositol deacetylase family protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D CLI_3150 polysaccharide deacetylase family protein K01567 pdaA; peptidoglycan-N-acetylmuramic acid deacetylase [EC:3.5.1.-] D CLI_3035 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D CLI_2028 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] D CLI_3328 ATPase, AAA family K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D CLI_0198 low molecular weight protein tyrosine phosphatase K20201 ywlE; protein arginine phosphatase [EC:3.9.1.2] D CLI_0281 splB; spore photoproduct lyase K03716 splB; spore photoproduct lyase [EC:4.1.99.14] D CLI_2105 myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53] D CLI_0794 myosin-cross-reactive antigen family protein K10254 ohyA; oleate hydratase [EC:4.2.1.53] D CLI_3584 carbohydrate kinase family protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D CLI_2242 putative R-2-hydroxyglutaryl-CoA dehydratase, alpha subunit K20025 hadB; (R)-2-hydroxyisocaproyl-CoA dehydratase alpha subunit [EC:4.2.1.157] D CLI_2241 putative R-2-hydroxyglutaryl-CoA dehydratase, beta subunit K20026 hadC; (R)-2-hydroxyisocaproyl-CoA dehydratase beta subunit [EC:4.2.1.157] D CLI_3460 fldB; R-phenyllactate dehydratase, B subunit K23110 fldB; (R)-3-(aryl)lactoyl-CoA dehydratase alpha subunit [EC:4.2.1.175] D CLI_3459 fldC; R-phenyllactate dehydratase, C subunit K23111 fldC; (R)-3-(aryl)lactoyl-CoA dehydratase beta subunit [EC:4.2.1.175] D CLI_2944 dpaL; diaminopropionate ammonia-lyase K01751 E4.3.1.15; diaminopropionate ammonia-lyase [EC:4.3.1.15] D CLI_2161 formate acetyltransferase K20038 cutC; choline trimethylamine-lyase [EC:4.3.99.4] D CLI_0159 conserved hypothetical protein TIGR00268 K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D CLI_1265 conserved hypothetical protein TIGR00268 K06864 larE; pyridinium-3,5-biscarboxylic acid mononucleotide sulfurtransferase [EC:4.4.1.37] D CLI_0158 conserved hypothetical protein K09121 larC; pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel chelatase [EC:4.99.1.12] D CLI_2235 hgdC-2; 2-hydroxyglutaryl-CoA dehydratase component A K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D CLI_3461 fldI; R-phenyllactate dehydratase activator K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D CLI_1635 hgdC-1; 2-hydroxyglutaryl-CoA dehydratase component A K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D CLI_3381 putative CoA-substrate-specific enzyme activase K23876 hgdC; (R)-2-hydroxyacyl-CoA dehydratese activating ATPase [EC:5.6.1.9] D CLI_0175 cphA; cyanophycin synthase (L-aspartate-adding) K03802 cphA; cyanophycin synthetase [EC:6.3.2.29 6.3.2.30] D CLI_0441 electron transport complex, RnfABCDGE type, D subunit K03614 rnfD; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit D [EC:7.1.1.11 7.2.1.2] D CLI_0440 electron transport complex, RnfABCDGE type, C subunit K03615 rnfC; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit C [EC:7.1.1.11 7.2.1.2] D CLI_0445 electron transport complex, RnfABCDGE type, B subunit K03616 rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2] D CLI_0611 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CLI_1616 hypothetical protein K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CLI_2701 calcium-translocating P-type ATPase, PMCA-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CLI_1623 cation-transporting ATPase, P-type K01537 ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10] D CLI_0561 cadA-1; cadmium-exporting ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] D CLI_2925 mgtA; magnesium-importing ATPase K01531 mgtA; P-type Mg2+ transporter [EC:7.2.2.14] D CLI_1391 cation-transporting ATPase, P-type K12952 ctpE; cation-transporting P-type ATPase E [EC:7.2.2.-] C 99981 Carbohydrate metabolism D CLI_0052 sfsA; sugar fermentation stimulation protein K06206 sfsA; sugar fermentation stimulation protein A C 99982 Energy metabolism D CLI_1078 ferritin-like diiron domain protein K19824 fprB; rubrerythrin D CLI_3331 iron-sulfur cluster-binding protein K05337 fer; ferredoxin D CLI_0145 iron-sulfur cluster-binding protein K05337 fer; ferredoxin D CLI_0442 electron transport complex, RnfABCDGE type, G subunit K03612 rnfG; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit G D CLI_0443 electron transport complex, RnfABCDGE type, E subunit K03613 rnfE; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit E D CLI_0444 electron transport complex, RnfABCDGE type, A subunit K03617 rnfA; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit A D CLI_2630 nifU; FeS cluster assembly scaffold protein NifU K04488 iscU; nitrogen fixation protein NifU and related proteins D CLI_1215 metallo-beta-lactamase family protein/flavodoxin K12264 norV; anaerobic nitric oxide reductase flavorubredoxin D CLI_0761 hypothetical protein K02587 nifE; nitrogenase molybdenum-cofactor synthesis protein NifE D CLI_2349 flavodoxin K03839 fldA; flavodoxin I D CLI_2857 iron-sulfur cluster-binding protein K02574 napH; ferredoxin-type protein NapH D CLI_3337 electron transfer flavoprotein, beta subunit/FixA family protein K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism D CLI_0283 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit D CLI_0672 degV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit D CLI_1399 DegV family protein K25232 fakB; fatty acid kinase fatty acid binding subunit C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D CLI_2534 PrdA domain protein K10796 prdE; D-proline reductase (dithiol)-stabilizing protein PrdE D CLI_2156 ethanolamine utilization protein EutJ family protein K04024 eutJ; ethanolamine utilization protein EutJ D CLI_2158 GTP-binding protein, EutP/PduV family K04029 eutP; ethanolamine utilization protein EutP D CLI_2153 ethanolamine utilization protein EutQ homolog K04030 eutQ; ethanolamine utilization protein EutQ D CLI_2159 ethanolamine utilization protein EutS homolog K04031 eutS; ethanolamine utilization protein EutS D CLI_1549 conserved hypothetical protein TIGR00044 K06997 yggS; PLP dependent protein C 99986 Glycan metabolism D CLI_2978 putative cell wall hydrolase K01449 cwlJ; cell wall hydrolase D CLI_3614 cell wall hydrolase family protein K01449 cwlJ; cell wall hydrolase C 99987 Cofactor metabolism D CLI_0039 conserved hypothetical protein K03688 ubiB; ubiquinone biosynthesis protein C 99988 Secondary metabolism C 99999 Others B B 09192 Unclassified: genetic information processing C 99973 Transcription D CLI_3600 gutM; glucitol operon activator protein K02466 gutM; glucitol operon activator protein D CLI_1483 major cold shock protein K03704 cspA; cold shock protein D CLI_1767 cold shock protein K03704 cspA; cold shock protein D CLI_0355 cold shock protein K03704 cspA; cold shock protein D CLI_0239 RNA-binding protein K06959 tex; protein Tex D CLI_2576 conserved hypothetical protein K09777 remA; extracellular matrix regulatory protein A D CLI_0005 conserved hypothetical protein K24648 remB; extracellular matrix regulatory protein B C 99974 Translation D CLI_3749 putative general stress protein K07571 K07571; S1 RNA binding domain protein D CLI_1185 metallo-beta-lactamase family protein K07576 K07576; metallo-beta-lactamase family protein C 99975 Protein processing D CLI_3698 UVR domain protein K19411 mcsA; protein arginine kinase activator D CLI_3371 tig; trigger factor K03545 tig; trigger factor D CLI_0299 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein D CLI_1830 hypC; hydrogenase assembly chaperone HypC/HupF K04653 hypC; hydrogenase expression/formation protein HypC D CLI_1829 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD D CLI_1828 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE D CLI_1831 hypF; [NiFe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF D CLI_2495 Mg chelatase family protein K07391 comM; magnesium chelatase family protein D CLI_2948 selenium-dependent molybdenum hydroxylase system protein, YqeB family K07402 xdhC; xanthine dehydrogenase accessory factor D CLI_2949 putative xanthine dehydrogenase accessory factor K07402 xdhC; xanthine dehydrogenase accessory factor C 99976 Replication and repair D CLI_3057 DNA repair protein, RadC family K03630 radC; DNA repair protein RadC D CLI_2496 conserved hypothetical protein TIGR00252 K07460 yraN; putative endonuclease D CLI_3518 GIY-YIG domain protein K07461 K07461; putative endonuclease D CLI_2494 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein D CLI_2422 putative phage terminase, small subunit K07474 xtmA; phage terminase small subunit D CLI_2633 ATPase, AAA family K07478 ycaJ; putative ATPase D CLI_2429 putative virulence-associated protein E K06919 K06919; putative DNA primase/helicase D CLI_2896 transposase ISLasa6a, IS3 family K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D CLI_1221 putative phage shock protein K03972 pspE; phage shock protein E D CLI_0048 conserved hypothetical protein TIGR00103 K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D CLI_1282 sugar transporter, GPH family K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family D CLI_1473 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D CLI_2233 proton-linked D-serine/D-alanine/glycine symporter K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D CLI_0607 amino acid permease family protein K03294 TC.APA; basic amino acid/polyamine antiporter, APA family D CLI_1618 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D CLI_2207 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D CLI_2315 amino acid/peptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family D CLI_0439 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family D CLI_3810 sodium:solute symporter family protein K03307 TC.SSS; solute:Na+ symporter, SSS family D CLI_2098 sodium:neurotransmitter symporter family protein K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family D CLI_1380 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CLI_2639 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CLI_2640 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CLI_1189 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CLI_1190 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CLI_2958 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CLI_1331 sodium:alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family D CLI_3464 branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D CLI_0894 brnQ-1; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D CLI_0895 brnQ-2; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family D CLI_0676 nucleoside transporter, NupC family K03317 TC.CNT; concentrative nucleoside transporter, CNT family C 99978 Cell growth D CLI_0735 ric; iron-sulfur cluster repair di-iron protein K07322 ytfE; regulator of cell morphogenesis and NO signaling D CLI_0051 bofA; sigma-K factor processing regulatory protein BofA K06317 bofA; inhibitor of the pro-sigma K processing machinery D CLI_1314 cotJB; spore coat peptide assembly protein CotJB K06333 cotJB; spore coat protein JB D CLI_1315 cotJC; spore coat peptide assembly protein CotJC K06334 cotJC; spore coat protein JC D CLI_3889 R3H domain protein K06346 jag; spoIIIJ-associated protein D CLI_0127 spmA; spore maturation protein A K06373 spmA; spore maturation protein A D CLI_0128 spore maturation protein B K06374 spmB; spore maturation protein B D CLI_3148 spoIIAA; anti-sigma F factor antagonist K06378 spoIIAA; stage II sporulation protein AA (anti-sigma F factor antagonist) D CLI_1869 putative sporulation protein K06384 spoIIM; stage II sporulation protein M D CLI_3018 stage II sporulation protein K06385 spoIIP; stage II sporulation protein P D CLI_0181 stage II sporulation protein R K06387 spoIIR; stage II sporulation protein R D CLI_1959 stage III sporulation protein AA K06390 spoIIIAA; stage III sporulation protein AA D CLI_1958 stage III sporulation protein AB K06391 spoIIIAB; stage III sporulation protein AB D CLI_1957 stage III sporulation protein AC K06392 spoIIIAC; stage III sporulation protein AC D CLI_1956 stage III sporulation protein AD K06393 spoIIIAD; stage III sporulation protein AD D CLI_1955 stage III sporulation protein AE K06394 spoIIIAE; stage III sporulation protein AE D CLI_1954 spoIIIAF; stage III sporulation protein AF K06395 spoIIIAF; stage III sporulation protein AF D CLI_1953 stage III sporulation protein AG K06396 spoIIIAG; stage III sporulation protein AG D CLI_1952 stage III sporulation protein AH K06397 spoIIIAH; stage III sporulation protein AH D CLI_2579 spoIVA; stage IV sporulation protein A K06398 spoIVA; stage IV sporulation protein A D CLI_2449 resolvase family protein K06400 spoIVCA; site-specific DNA recombinase D CLI_3307 resolvase family protein K06400 spoIVCA; site-specific DNA recombinase D CLI_3145 spoVAC; stage V sporulation protein AC K06405 spoVAC; stage V sporulation protein AC D CLI_3144 stage V sporulation protein AD family protein K06406 spoVAD; stage V sporulation protein AD D CLI_3143 spoVAE; stage V sporulation protein AE K06407 spoVAE; stage V sporulation protein AE D CLI_3766 spoVG; stage V sporulation protein G K06412 spoVG; stage V sporulation protein G D CLI_2458 spoVS; stage V sporulation protein S K06416 spoVS; stage V sporulation protein S D CLI_3107 small, acid-soluble spore protein K06419 SASP-B; small acid-soluble spore protein B (major beta-type SASP) D CLI_2367 small, acid-soluble spore protein K06421 sspD; small acid-soluble spore protein D (minor alpha/beta-type SASP) D CLI_1321 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor) D CLI_0875 small acid-soluble spore protein, H-type K06425 sspH; small acid-soluble spore protein H (minor) D CLI_1122 tlp; small, acid-soluble spore protein tlp K06434 tlp; small acid-soluble spore protein (thioredoxin-like protein) D CLI_0170 sporulation peptidase YabG K06436 yabG; spore coat assemly protein D CLI_3003 putative stage IV sporulation protein K06438 yqfD; similar to stage IV sporulation protein D CLI_2928 spore germination protein, GerA family K06295 gerKA; spore germination protein KA D CLI_2042 spore germination protein K06295 gerKA; spore germination protein KA D CLI_2847 gerAA; spore germination protein K06295 gerKA; spore germination protein KA D CLI_2044 germination protein, Ger(x)C family K06308 yfkR; spore germination protein D CLI_0178 spore germination protein K06310 yndD; spore germination protein D CLI_0183 ypeB; germination protein YpeB K06313 ypeB; spore germination protein C 99993 Cell motility D CLI_0805 tfoX domain protein K07343 tfoX; DNA transformation protein and related proteins C 99995 Signaling proteins D CLI_0629 carbon starvation protein CstA K06200 cstA; carbon starvation protein D CLI_2621 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein D CLI_0563 PhoH family protein K07175 phoH2; PhoH-like ATPase C 99992 Structural proteins D CLI_0852 glycosyl hydrolase, family 25/peptidoglycan binding domain protein K07273 acm; lysozyme D CLI_0141 efflux transporter, RND family, MFP subunit K02005 ABC.CD.TX; HlyD family secretion protein D CLI_0975 putative propanediol utilization protein PduB K27263 pduB; bacterial microcompartment shell protein C 99994 Others D CLI_2584 phoU; phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D CLI_0598 hemerythrin-like metal-binding domain protein K07216 hr; hemerythrin D CLI_2008 molybdopterin cofactor synthesis/binding domain protein K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D CLI_1025 conserved hypothetical protein K26996 sdpI; immunity protein, SdpI family B B 09194 Poorly characterized C 99996 General function prediction only D CLI_2289 acetyltransferase, GNAT family K02348 elaA; ElaA protein D CLI_3563 PHP domain protein K04477 ycdX; putative hydrolase D CLI_0702 csaA; csaA protein K06878 K06878; tRNA-binding protein D CLI_1570 patatin-like phospholipase family protein K07001 K07001; NTE family protein D CLI_0525 phospholipase family protein K07001 K07001; NTE family protein D CLI_3565 putative metal-dependent hydrolase, membrane-bound K07038 K07038; inner membrane protein D CLI_2381 conserved hypothetical protein K07038 K07038; inner membrane protein D CLI_3588 YihY family protein K07058 K07058; membrane protein D CLI_0548 lemA family protein K03744 lemA; LemA protein D CLI_1073 putative phage infection protein K01421 yhgE; putative membrane protein D CLI_1074 putative phage infection protein K01421 yhgE; putative membrane protein D CLI_2981 putative phage infection protein K01421 yhgE; putative membrane protein D CLI_1132 conserved hypothetical protein K08982 K08982; putative membrane protein C 99997 Function unknown D CLI_0660 radical SAM domain protein K06871 K06871; uncharacterized protein D CLI_3123 radical SAM domain protein K06871 K06871; uncharacterized protein D CLI_3234 radical SAM domain protein K06871 K06871; uncharacterized protein D CLI_0549 conserved hypothetical protein K06872 K06872; uncharacterized protein D CLI_1150 conserved hypothetical protein K06888 K06888; uncharacterized protein D CLI_0627 conserved hypothetical protein K06889 K06889; uncharacterized protein D CLI_2090 conserved hypothetical protein K06889 K06889; uncharacterized protein D CLI_0277 conserved hypothetical protein K06889 K06889; uncharacterized protein D CLI_3857 CoA-binding protein K06929 K06929; uncharacterized protein D CLI_2503 conserved hypothetical protein K06960 K06960; uncharacterized protein D CLI_3684 conserved hypothetical protein K06962 K06962; uncharacterized protein D CLI_2569 putative neutral zinc metallopeptidase K06973 K06973; uncharacterized protein D CLI_0715 pyridoxamine 5'-phosphate oxidase family protein K07005 K07005; uncharacterized protein D CLI_1400 5-nitroimidazole antibiotic resistance protein K07005 K07005; uncharacterized protein D CLI_0713 putative nimA protein K07005 K07005; uncharacterized protein D CLI_2088 conserved hypothetical protein K07069 K07069; uncharacterized protein D CLI_2249 conserved hypothetical protein K07078 K07078; uncharacterized protein D CLI_1589 oxidoreductase, aldo/keto reductase family K07079 K07079; uncharacterized protein D CLI_3555 oxidoreductase, aldo/keto reductase family K07079 K07079; uncharacterized protein D CLI_3394 putative permease K07089 K07089; uncharacterized protein D CLI_2918 putative membrane protein K07090 K07090; uncharacterized protein D CLI_1079 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D CLI_3431 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D CLI_3348 phosphodiesterase, MJ0936 family K07095 K07095; uncharacterized protein D CLI_0243 Ser/Thr protein phosphatase family protein K07099 K07099; uncharacterized protein D CLI_0020 putative transcriptional regulator K07105 K07105; uncharacterized protein D CLI_1662 putative membrane protein K07112 K07112; uncharacterized protein D CLI_1658 putative membrane protein K07112 K07112; uncharacterized protein D CLI_1656 putative membrane protein K07112 K07112; uncharacterized protein D CLI_0359 conserved hypothetical protein K07118 K07118; uncharacterized protein D CLI_2128 radical SAM domain protein K07129 K07129; uncharacterized protein D CLI_3862 pyridine nucleotide-disulphide oxidoreductase family protein K07137 K07137; uncharacterized protein D CLI_3611 oxidoreductase, FAD-binding K07137 K07137; uncharacterized protein D CLI_3776 radical SAM protein, TIGR01212 family K07139 K07139; uncharacterized protein D CLI_2986 conserved hypothetical protein K07164 K07164; uncharacterized protein D CLI_3891 conserved hypothetical protein TIGR00278 K08998 K08998; uncharacterized protein D CLI_3005 GatB/Yqey domain protein K09117 K09117; uncharacterized protein D CLI_0022 putative membrane protein K09118 K09118; uncharacterized protein D CLI_0736 conserved hypothetical protein K09155 K09155; uncharacterized protein D CLI_1066 conserved hypothetical protein K09702 K09702; uncharacterized protein D CLI_0821 conserved hypothetical protein K09705 K09705; uncharacterized protein D CLI_2803 conserved hypothetical protein K09749 K09749; uncharacterized protein D CLI_2969 conserved hypothetical protein K09764 K09764; uncharacterized protein D CLI_0246 conserved hypothetical protein K09766 K09766; uncharacterized protein D CLI_3448 YaiI/YqxD family protein K09768 K09768; uncharacterized protein D CLI_0615 conserved hypothetical protein K09770 K09770; uncharacterized protein D CLI_0507 conserved hypothetical protein K09779 K09779; uncharacterized protein D CLI_2452 conserved hypothetical protein K09779 K09779; uncharacterized protein D CLI_2506 helix-turn-helix protein, YlxM/p13 family K09787 K09787; uncharacterized protein D CLI_0714 conserved hypothetical protein K09790 K09790; uncharacterized protein D CLI_1774 RNA-binding protein K00243 K00243; uncharacterized protein D CLI_2677 conserved hypothetical protein K09931 K09931; uncharacterized protein D CLI_1446 conserved hypothetical protein K09957 K09957; uncharacterized protein D CLI_3530 conserved hypothetical protein K09963 K09963; uncharacterized protein D CLI_1445 conserved hypothetical protein K09963 K09963; uncharacterized protein D CLI_1303 conserved hypothetical protein K05967 K05967; uncharacterized protein D CLI_1199 conserved hypothetical protein K01163 K01163; uncharacterized protein D CLI_3042 conserved hypothetical protein K07584 ysxB; uncharacterized protein D CLI_2476 conserved hypothetical protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 30, 2024