+E Ribosome biogenesis KO
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Ribosome Biogenesis - Clostridium botulinum H04402 065
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D H04402_02481 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C H04402_03033 GTP-binding protein Era K03595 era; GTPase
C H04402_03080 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C H04402_02448 transcription termination protein NusA K02600 nusA; transcription termination/antitermination protein NusA
C H04402_01895 transcription termination protein NusB K03625 nusB; transcription antitermination protein NusB
C H04402_03596 transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D H04402_03359 ribosomal small subunit pseudouridine synthase A K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
D H04402_00073 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D H04402_02535 ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D H04402_02522 ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D H04402_03044 ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D H04402_03740A 16s rRNAmethyltransferase GidA K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D H04402_01524 rRNAsmall subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D H04402_00055 rRNAsmall subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D H04402_01889 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D H04402_03602 trmh family tRNA/rRNAmethyltransferase YacO K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D H04402_03671 LSU m3Psi1915 methyltransferase RlmH ## ybeA K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D H04402_02534 ribosomal RNA large subunit methyltransferase N K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D H04402_02943 putative florfenicol resistance protein K15632 cfr; 23S rRNA (adenine-C8)-methyltransferase [EC:2.1.1.224]
D H04402_01889 RNA binding methyltransferase FtsJ like K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D H04402_03467 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D H04402_02949 RNA methyltransferase, TrmA family K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D H04402_01808 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D H04402_01502 ribosomal large subunit pseudouridine synthase C K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
D H04402_03074 similar to ribosomal large subunit pseudouridine synthase D, CAC1266-type K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D H04402_01547 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
B ribosomal protein modification factors
C H04402_03405 ribosomal-protein-S18p-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C H04402_00033 ribosomal-protein-S5p-alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]
C H04402_02472 16s rRNAprocessing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C H04402_02433 ribosomal protein S12p Asp88 (E. coli) methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C H04402_03045 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C H04402_02481 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C H04402_03084 cytoplasmic axial filament protein CafA and Ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-]
C H04402_02662 putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C H04402_03604 ribonuclease III family protein K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C H04402_02882 cold-shock DEAD-box protein A K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C H04402_01774 ATP-dependent RNA helicase YxiN K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C H04402_01775 ATP-dependent RNA helicase YxiN K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C H04402_02038 ATP-dependent RNA helicase BA2475 K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
C H04402_01772 ATP-dependent RNA helicase YfmL K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C H04402_03033 GTP-binding protein Era K03595 era; GTPase
C H04402_02531 ribosome small subunit-stimulated GTPase EngC K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C H04402_02551 GTP-binding protein EngA K03977 engA; GTPase
C H04402_03080 GTP-binding protein Obg K03979 obgE; GTPase [EC:3.6.5.-]
C H04402_02468 50s ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF) K14540 rbgA; ribosome biogenesis GTPase A
C H04402_03152 GTP-binding protein HflX K03665 hflX; GTPase
B Other maturation factors
C H04402_00133 sua5 YciO YrdC YwlC family protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C H04402_03131 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C H04402_02444 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C H04402_02449 clustered with transcription termination protein NusA K09748 rimP; ribosome maturation factor RimP
C H04402_00003 hypothetical protein K14761 rlbA; ribosome-associated protein
C H04402_03036 metal-dependent hydrolase K07042 ybeY; probable rRNA maturation factor
C H04402_03079 RNA binding protein K07574 yhbY; RNA-binding protein
C H04402_00161 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor
C H04402_01522 GTP-binding and nucleic acid-binding protein YchF K06942 ychF; ribosome-binding ATPase
C H04402_02485 protein, clustered with ribosomal protein L32p K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024