+E Transcription factors KO #

  Transcription Factors - Clostridium botulinum BKT015925

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D CbC4_4046 putative cytosine-specific DNA methylotransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D CbC4_4047 putative cytosine-specific DNA methylotransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family D CbC4_1632 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon D CbC4_1930 transcriptional regulator, LysR family K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon C DeoR family D CbC4_0624 Transcriptional regulator of sugar metabolism, putative K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CbC4_0858 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CbC4_2257 Sporulation stage III, transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D CbC4_1954 transcriptional regulator, DeoR family K06608 iolR; DeoR family transcriptional regulator, myo-inositol catabolism operon repressor D CbC4_1816 putative signal-transduction protein with CBS domains K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator C LacI family D CbC4_1908 Catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CbC4_2378 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CbC4_0083 Alanine racemase K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CbC4_0349 LacI family transcription regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CbC4_0649 putative transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CbC4_0667 Transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CbC4_0777 transcriptional regulator, LacI family K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor C GntR family D CbC4_0647 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D CbC4_2054 transcriptional regulator, GntR family K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator D CbC4_2064 transcription regulator, GntR family, putative K03710 K03710; GntR family transcriptional regulator D CbC4_0793 transcriptional regulator, GntR family, putative K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D CbC4_1996 transcriptional regulator, gntR family K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family D CbC4_1716 transcription regulator (TetR/AcrR family) K13770 ysiA; TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein C Lrp/AsnC family D CbC4_1886 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA C LuxR family C MarR family C MerR family C Fur family D CbC4_1542 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CbC4_0740 ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CbC4_2126 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family C CRP/FNR family C Rrf2 family D CbC4_1550 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D CbC4_4048 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CbC4_0316 regulatory protein, ArsR K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family D CbC4_1785 helix-turn-helix domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family D CbC4_0327 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D CbC4_0280 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D CbC4_1341 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator C Other families D CbC4_1582 iron-dependent transcriptional repressor K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D CbC4_1338 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CbC4_0290 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CbC4_0030 birA bifunctional protein, putative K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CbC4_0142 purR; purine operon repressor, PurR K09685 purR; HTH-type transcriptional regulator, purine operon repressor D CbC4_2216 sensory box sigma-54 dependent transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CbC4_0391 transcriptional regulatory protein K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D CbC4_0108 conserved hypothetical protein K02647 cdaR; carbohydrate diacid regulator D CbC4_2222 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor D CbC4_1458 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D CbC4_1560 transcription regulator, Cro/CI family -related protein K07727 K07727; putative transcriptional regulator D CbC4_4140 conserved hypothetical protein K07727 K07727; putative transcriptional regulator D CbC4_4165 DNA-binding protein K07727 K07727; putative transcriptional regulator D CbC4_5052 hypothetical protein K07729 K07729; putative transcriptional regulator D CbC4_1704 conserved domain protein K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D CbC4_0416 conserved protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D CbC4_2095 sacT; SACPA operon antiterminator K03480 glcT; transcriptional antiterminator C Others D CbC4_1596 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CbC4_1071 conserved protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CbC4_2467 transition state regulatory protein AbrB K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D CbC4_0152 transcriptional regulator, AbrB family K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D CbC4_0009 parB family protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CbC4_0011 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CbC4_2349 glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D CbC4_1264 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D CbC4_1835 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D CbC4_0598 transcriptional activator, TenA K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2] D CbC4_0197 transcription regulator ctsR K03708 ctsR; transcriptional regulator of stress and heat shock response D CbC4_0565 transcriptional regulator, putative K05311 cggR; central glycolytic genes regulator D CbC4_1180 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CbC4_1523 nrdR; ATP-cone domain protein K07738 nrdR; transcriptional repressor NrdR ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0