+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Cyanistes caeruleus (blue tit)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        111925004 RNMT; mRNA cap guanine-N7 methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        111925739 mRNA-capping enzyme isoform X1	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        111925738 mRNA-capping enzyme-like isoform X1	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        111941436 CDK7; cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        111927547 CMTR1; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X1	K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] 
E        111934531 CMTR2; cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2	K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] 
E        111946204 FAM103A1; RNMT-activating mini protein isoform X1	K18708 FAM103A1; RNMT-activating mini protein 
D      Cap binding complex
E        111941227 NCBP1; nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        111933484 NCBP2; nuclear cap-binding protein subunit 2 isoform X1	K12883 NCBP2; nuclear cap-binding protein subunit 2 
E        111929367 nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        111943626 NUDT21; cleavage and polyadenylation specificity factor subunit 5	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        111937516 CPSF6; cleavage and polyadenylation specificity factor subunit 6	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
E        111930397 CPSF7; cleavage and polyadenylation specificity factor subunit 7	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
E        111945912 cleavage and polyadenylation specificity factor subunit 7-like	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        111930384 CLP1; polyribonucleotide 5'-hydroxyl-kinase Clp1	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        111925054 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 isoform X1	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        111929877 CPSF2; cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        111925942 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        111936123 CPSF4; cleavage and polyadenylation specificity factor subunit 4 isoform X1	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        111937463 CPSF4L; putative cleavage and polyadenylation specificity factor subunit 4-like protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        111929239 pre-mRNA 3'-end-processing factor FIP1-like	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        111928446 FIP1L1; pre-mRNA 3'-end-processing factor FIP1	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        111933817 WDR33; pre-mRNA 3' end processing protein WDR33 isoform X1	K15542 PFS2; polyadenylation factor subunit 2 
E        111927633 PPP1CB; serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111936713 PPP1CC; serine/threonine-protein phosphatase PP1-gamma catalytic subunit	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        111938644 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        111938010 CSTF1; cleavage stimulation factor subunit 1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        111922451 CSTF2; cleavage stimulation factor subunit 2	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        111930460 CSTF3; cleavage stimulation factor subunit 3	K14408 CSTF3; cleavage stimulation factor subunit 3 
D      U7-dependent histone pre-mRNA processing factors
E        111938189 small nuclear ribonucleoprotein-associated protein B'	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        111936636 SNRPD3; small nuclear ribonucleoprotein Sm D3	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        111939694 SNRPE; small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        111931087 SNRPF; small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        111938748 SNRPG; small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        111943472 LSM10; U7 snRNA-associated Sm-like protein LSm10	K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 
E        111935490 LSM11; U7 snRNA-associated Sm-like protein LSm11	K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 
E        111929877 CPSF2; cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        111925942 CPSF3; cleavage and polyadenylation specificity factor subunit 3 isoform X1	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        111922451 CSTF2; cleavage stimulation factor subunit 2	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        111927723 histone RNA hairpin-binding protein-like	K18710 SLBP; histone RNA hairpin-binding protein 
E        111928272 uncharacterized protein LOC111928272	K18710 SLBP; histone RNA hairpin-binding protein 
E        111928273 histone RNA hairpin-binding protein-like	K18710 SLBP; histone RNA hairpin-binding protein 
E        111925724 CASP8AP2; CASP8-associated protein 2	K25593 CASP8AP2; CASP8-associated protein 2 
D      DRB sensitivity inducing factor (DSIF) complex
E        111937623 SUPT4H1; transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        111942416 SUPT5H; transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        111922569 METTL3; N6-adenosine-methyltransferase catalytic subunit	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        111929078 METTL14; N6-adenosine-methyltransferase non-catalytic subunit	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        111924001 METTL4; methyltransferase-like protein 4 isoform X1	K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] 
E        111942600 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase-like	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        111938740 LOW QUALITY PROTEIN: U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase-like	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        111927671 WTAP; pre-mRNA-splicing regulator WTAP	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        111924535 VIRMA; protein virilizer homolog isoform X1	K22910 VIRMA; protein virilizer 
E        111935199 RBM15B; putative RNA-binding protein 15B	K13190 RBM15; RNA-binding protein 15 
E        111942754 RBM15; LOW QUALITY PROTEIN: putative RNA-binding protein 15	K13190 RBM15; RNA-binding protein 15 
E        111937408 ZC3H13; zinc finger CCCH domain-containing protein 13 isoform X1	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
E        111923006 CBLL1; E3 ubiquitin-protein ligase Hakai isoform X1	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        111929834 PAPOLA; poly(A) polymerase alpha isoform X1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        111926438 PAPOLG; poly(A) polymerase gamma isoform X1	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        111941450 PAPD4; poly(A) RNA polymerase GLD2 isoform X1	K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        111931696 BARD1; BRCA1-associated RING domain protein 1	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        111926522 RBM26; RNA-binding protein 26 isoform X1	K13192 RBM26; RNA-binding protein 26 
E        111934595 FTO; alpha-ketoglutarate-dependent dioxygenase FTO isoform X1	K19469 FTO; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        111936145 ALKBH5; RNA demethylase ALKBH5	K10767 ALKBH5; mRNA N6-methyladenine demethylase [EC:1.14.11.53] 
E        111938690 TARDBP; TAR DNA-binding protein 43	K23600 TARDBP; TAR DNA-binding protein 43 
C    Other processing factors
D      111937971 DHX40; probable ATP-dependent RNA helicase DHX40	K18711 DHX40; ATP-dependent RNA helicase DHX40 [EC:5.6.2.6] 
D      111923140 KIN; DNA/RNA-binding protein KIN17 isoform X1	K13102 KIN; DNA/RNA-binding protein KIN17 
D      111932092 METTL8; methyltransferase-like protein 8 isoform X1	K24975 METTL8; mRNA N(3)-methylcytidine methyltransferase METTL8 [EC:2.1.1.-] 
D      111935922 METTL22; methyltransferase-like protein 22	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      111938954 FAM46B; putative nucleotidyltransferase FAM46B	K23033 TENT5A_B; terminal nucleotidyltransferase 5A/B [EC:2.7.7.-] 
D      111938681 FAM46C; putative nucleotidyltransferase FAM46C	K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] 
D      111928577 FAM46D; putative nucleotidyltransferase FAM46D	K23035 TENT5D; terminal nucleotidyltransferase 5D [EC:2.7.7.19] 
D      111929913 ZC3H14; zinc finger CCCH domain-containing protein 14	K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 
D      111922011 zinc finger CCCH domain-containing protein 14-like	K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 
D      111942199 SRRT; LOW QUALITY PROTEIN: serrate RNA effector molecule homolog	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        111939493 RBM8A; RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        111933035 MAGOH; protein mago nashi homolog	K12877 MAGOH; protein mago nashi 
E        111937592 ALYREF; THO complex subunit 4	K12881 THOC4; THO complex subunit 4 
E        111926649 EIF4A3; eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        111935046 CCDC174; coiled-coil domain-containing protein 174	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        111940007 CASC3; protein CASC3	K14323 CASC3; protein CASC3 
E        111923701 SAP18; histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        111929577 PNN; pinin	K13114 PNN; pinin 
E        111943683 RNPS1; RNA-binding protein with serine-rich domain 1	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        111939106 SRRM1; serine/arginine repetitive matrix protein 1 isoform X1	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        111924951 THOC1; THO complex subunit 1 isoform X1	K12878 THOC1; THO complex subunit 1 
E        111928674 THOC2; THO complex subunit 2 isoform X1	K12879 THOC2; THO complex subunit 2 
E        111935471 THOC3; THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        111937592 ALYREF; THO complex subunit 4	K12881 THOC4; THO complex subunit 4 
E        111936666 THOC5; THO complex subunit 5 homolog isoform X1	K13174 THOC5; THO complex subunit 5 
E        111935289 THOC7; THO complex subunit 7 homolog	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        111922717 PCID2; PCI domain-containing protein 2 isoform X1	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        111924354 ENY2; transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        111929261 centrin-2 isoform X1	K10840 CETN2; centrin-2 
E        111941847 CETN3; centrin-3 isoform X1	K16466 CETN3; centrin-3 
E        111931823 MCM3AP; germinal-center associated nuclear protein	K24317 MCM3AP; germinal-center associated nuclear protein [EC:2.3.1.48] 
D      Nuclear pore complex
E        111932528 TPR; nucleoprotein TPR	K09291 TPR; nucleoprotein TPR 
E        111938015 RAE1; mRNA export factor	K14298 RAE1; mRNA export factor 
E        111934910 SEC13; protein SEC13 homolog	K14004 SEC13; protein transport protein SEC13 
E        111936172 NUP37; nucleoporin Nup37	K14302 NUP37; nuclear pore complex protein Nup37 
E        111937549 NUP85; nuclear pore complex protein Nup85	K14304 NUP85; nuclear pore complex protein Nup85 
E        111927702 NUP43; nucleoporin Nup43	K14305 NUP43; nuclear pore complex protein Nup43 
E        111923332 NUP50; nuclear pore complex protein Nup50	K14295 NUP50; nuclear pore complex protein Nup50 
E        111929447 NUP54; nucleoporin p54	K14308 NUP54; nuclear pore complex protein Nup54 
E        111929189 LOW QUALITY PROTEIN: nuclear pore glycoprotein p62-like	K14306 NUP62; nuclear pore complex protein Nup62 
E        111937679 NUP88; nuclear pore complex protein Nup88	K14318 NUP88; nuclear pore complex protein Nup88 
E        111934543 NUP93; nuclear pore complex protein Nup93 isoform X1	K14309 NUP93; nuclear pore complex protein Nup93 
E        111942929 NUP98; nuclear pore complex protein Nup98-Nup96 isoform X1	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        111932707 NUP107; nuclear pore complex protein Nup107	K14301 NUP107; nuclear pore complex protein Nup107 
E        111927074 NUP133; nuclear pore complex protein Nup133	K14300 NUP133; nuclear pore complex protein Nup133 
E        111936978 NUP188; nucleoporin NUP188 homolog	K14311 NUP188; nuclear pore complex protein Nup188 
E        111923778 NUP153; nuclear pore complex protein Nup153 isoform X1	K14296 NUP153; nuclear pore complex protein Nup153 
E        111941009 NUP155; nuclear pore complex protein Nup155	K14312 NUP155; nuclear pore complex protein Nup155 
E        111930370 NUP160; nuclear pore complex protein Nup160	K14303 NUP160; nuclear pore complex protein Nup160 
E        111931892 NUP35; nucleoporin NUP53	K14313 NUP35; nuclear pore complex protein Nup53 
E        111930354 NUP205; nuclear pore complex protein Nup205	K14310 NUP205; nuclear pore complex protein Nup205 
E        111935343 NUP210; nuclear pore membrane glycoprotein 210	K14314 NUP210; nuclear pore complex protein Nup210 
E        111937008 NUP214; nuclear pore complex protein Nup214 isoform X1	K14317 NUP214; nuclear pore complex protein Nup214 
E        111923485 NUP58; nucleoporin p58/p45 isoform X1	K14307 NUPL1; nucleoporin p58/p45 
E        111924314 LOW QUALITY PROTEIN: nucleoporin-like protein 2	K14321 NUPL2; nucleoporin-like protein 2 
E        111924416 nucleoporin-like protein 2	K14321 NUPL2; nucleoporin-like protein 2 
E        111924438 LOW QUALITY PROTEIN: nucleoporin-like protein 2	K14321 NUPL2; nucleoporin-like protein 2 
E        111933030 NDC1; nucleoporin NDC1	K14315 NDC1; nucleoporin NDC1 
E        111924997 SEH1L; nucleoporin SEH1	K14299 SEH1; nucleoporin SEH1 
E        111944706 E3 SUMO-protein ligase RanBP2-like	K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] 
E        111933716 SENP2; sentrin-specific protease 2 isoform X1	K03345 SENP2; sentrin-specific protease 2 (axin associating molecule) [EC:3.4.22.68] 
E        111940511 AAAS; aladin	K14320 AAAS; aladin 
E        111941847 CETN3; centrin-3 isoform X1	K16466 CETN3; centrin-3 
E        111936969 GLE1; nucleoporin GLE1	K18723 GLE1; nucleoporin GLE1 
E        111928700 NXT2; NTF2-related export protein 2 isoform X1	K14285 NXT1_2; NTF2-related export protein 1/2 
D      Ran-mediated transport factors
E        111936334 RAN; GTP-binding nuclear protein Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        111933853 ANP32A; acidic leucine-rich nuclear phosphoprotein 32 family member A	K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D 
E        111940434 acidic leucine-rich nuclear phosphoprotein 32 family member B isoform X1	K18647 ANP32B; acidic leucine-rich nuclear phosphoprotein 32 family member B 
E        111940437 ELAVL1; ELAV-like protein 1 isoform X1	K13088 ELAVL1; ELAV-like protein 1 
E        111941277 ELAVL2; ELAV-like protein 2 isoform X1	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        111933066 ELAVL4; ELAV-like protein 4 isoform X1	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        111935465 FAF2; FAS-associated factor 2	K18726 FAF2; FAS-associated factor 2 
E        111941089 VCP; transitional endoplasmic reticulum ATPase	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        111929637 VCPKMT; protein-lysine methyltransferase METTL21D	K21806 VCPKMT; protein N-lysine methyltransferase METTL21D [EC:2.1.1.-] 
E        111926443 XPO1; exportin-1	K14290 XPO1; exportin-1 
E        111938760 LOW QUALITY PROTEIN: exportin-7-like	K18460 XPO7; exportin-7 
E        111934577 RANGAP1; ran GTPase-activating protein 1 isoform X1	K14319 RANGAP1; Ran GTPase-activating protein 1 
E        111937708 TAF15; TATA-binding protein-associated factor 2N isoform X1	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      eIF4F and regulatory proteins
E        111929417 EIF4E; eukaryotic translation initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        111945824 eukaryotic translation initiation factor 4E-like isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        111933605 EIF4E2; eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        111933380 EIF4A2; eukaryotic initiation factor 4A-II	K03257 EIF4A; translation initiation factor 4A 
E        111933601 EIF4G1; eukaryotic translation initiation factor 4 gamma 1	K03260 EIF4G; translation initiation factor 4G 
E        111930373 EIF4G2; eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        111938552 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        111940550 EIF4B; eukaryotic translation initiation factor 4B	K03258 EIF4B; translation initiation factor 4B 
E        111937662 EIF4H; eukaryotic translation initiation factor 4H isoform X1	K24086 EIF4H; translation initiation factor 4H 
E        111936611 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1	K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
E        111926187 ANGEL2; protein angel homolog 2 isoform X1	K18729 ANGEL; protein angel 
E        111942885 ANGEL1; protein angel homolog 1 isoform X1	K18729 ANGEL; protein angel 
E        111933364 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        111928507 FMR1; synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        111935493 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        111945961 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        111935500 GEMIN5; gem-associated protein 5 isoform X1	K13133 GEMIN5; gem associated protein 5 
E        111928271 TACC3; transforming acidic coiled-coil-containing protein 3 isoform X1	K14283 TACC3; transforming acidic coiled-coil-containing protein 3 
E        111928175 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111931202 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111934305 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111935439 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111926671 DDX3X; ATP-dependent RNA helicase DDX3X	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        111933675 GIGYF2; GRB10-interacting GYF protein 2 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        111924496 PABPC1; polyadenylate-binding protein 1	K13126 PABPC; polyadenylate-binding protein 
E        111938248 PABPC1L; polyadenylate-binding protein 1-like isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        111939136 PABPC4; polyadenylate-binding protein 4	K13126 PABPC; polyadenylate-binding protein 
E        111941419 PAIP1; polyadenylate-binding protein-interacting protein 1	K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 
E        111935698 PAIP2; polyadenylate-binding protein-interacting protein 2	K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
E        111930489 DEAF1; deformed epidermal autoregulatory factor 1 homolog isoform X1	K23041 DEAF1; deformed epidermal autoregulatory factor 1 
E        111928754 MCTS1; malignant T-cell-amplified sequence 1	K07575 MCTS; malignant T-cell-amplified sequence 
E        111936379 DENR; density-regulated protein	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
E        111925855 C->U-editing enzyme APOBEC-1-like isoform X1	K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
E        111925864 C->U-editing enzyme APOBEC-1-like isoform X1	K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
E        111931638 A1CF; APOBEC1 complementation factor	K24978 A1CF; APOBEC1 complementation factor 
D      Other transport factors
E        111932051 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        111936599 MSI1; RNA-binding protein Musashi homolog 1	K14411 MSI; RNA-binding protein Musashi 
E        111937872 MSI2; RNA-binding protein Musashi homolog 2	K14411 MSI; RNA-binding protein Musashi 
E        111940284 DAZAP1; DAZ-associated protein 1 isoform X1	K14411 MSI; RNA-binding protein Musashi 
E        111927661 HBS1-like protein isoform X1	K14416 HBS1; elongation factor 1 alpha-like protein 
E        111927650 HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        111941526 PELO; protein pelota homolog	K06965 PELO; protein pelota 
E        111934401 PABPN1L; embryonic polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        111943552 polyadenylate-binding protein 2-like	K14396 PABPN1; polyadenylate-binding protein 2 
E        111942994 polyadenylate-binding protein 2-like	K14396 PABPN1; polyadenylate-binding protein 2 
E        111938508 ATP-dependent RNA helicase DDX19A isoform X1	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        111944657 ATP-dependent RNA helicase DDX25-like isoform X1	K18656 DDX25; ATP-dependent RNA helicase DDX25 [EC:5.6.2.7] 
E        111922652 XAB2; pre-mRNA-splicing factor SYF1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        111922214 SARNP; SAP domain-containing ribonucleoprotein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        111939065 RCC1; regulator of chromosome condensation isoform X1	K11493 RCC1; regulator of chromosome condensation 
E        111934183 LARP6; la-related protein 6	K18733 LARP6; la-related protein 6 
E        111940357 la-related protein 6-like	K18733 LARP6; la-related protein 6 
E        111934256 POLDIP3; polymerase delta-interacting protein 3 isoform X1	K22414 POLDIP3; polymerase delta-interacting protein 3 
E        111939817 ZC3H11A; zinc finger CCCH domain-containing protein 11A isoform X1	K22415 ZC3H11; zinc finger CCCH domain-containing protein 11 
E        111934310 PATL2; protein PAT1 homolog 2 isoform X1	K24823 PATL2; protein PAT1 homolog 2 
C    Surveillance factors
D      Surveillance complex
E        111935688 ETF1; eukaryotic peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        111935967 GSPT1; eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1	K03267 ERF3; peptide chain release factor subunit 3 
E        111940326 UPF1; regulator of nonsense transcripts 1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        111923122 UPF2; regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
E        111922702 UPF3A; regulator of nonsense transcripts 3A	K14328 UPF3; regulator of nonsense transcripts 3 
E        111928658 UPF3B; regulator of nonsense transcripts 3B	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        111928993 PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        111935602 PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        111942682 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform-like	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        111931658 PPP2R2D; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        111935427 PPP2R2B; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        111928208 PPP2R2C; protein phosphatase 2, regulatory subunit B, gamma isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        111938800 PPP2R2A; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        111930022 PPP2R3C; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        111933691 PPP2R3A; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        111945861 PPP2R3B; serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta isoform X1	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        111929809 PPP2R5C; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        111926183 PPP2R5A; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        111929728 PPP2R5E; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        111926353 PPP2R5D; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        111936263 SMG1; serine/threonine-protein kinase SMG1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        111939455 SMG5; protein SMG5 isoform X1	K11125 SMG5; protein SMG5 
E        111937752 SMG6; telomerase-binding protein EST1A isoform X1	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        111932548 SMG7; protein SMG7 isoform X1	K14409 SMG7; protein SMG7 
E        111937970 SMG8; protein SMG8	K18734 SMG8; protein SMG8 
E        111933675 GIGYF2; GRB10-interacting GYF protein 2 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        111941748 SECISBP2; selenocysteine insertion sequence-binding protein 2 isoform X1	K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 
E        111933883 SECISBP2L; selenocysteine insertion sequence-binding protein 2-like	K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 
E        111934976 GTPBP1; GTP-binding protein 1 isoform X1	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        111940810 PUM3; pumilio homolog 3	K14844 PUF6; pumilio homology domain family member 6 
E        111934140 MYO5C; unconventional myosin-Vc	K10357 MYO5; myosin V 
E        111933886 MYO5A; unconventional myosin-Va	K10357 MYO5; myosin V 
E        111941036 unconventional myosin-Vb-like	K10357 MYO5; myosin V 
E        111935265 BICD2; protein bicaudal D homolog 2	K18739 BICD; protein bicaudal D 
E        111931354 BICD1; protein bicaudal D homolog 1	K18739 BICD; protein bicaudal D 
D      Factors that have mRNA localization signals
E        111946142 actin, cytoplasmic 2-like	K05692 ACTB_G1; actin beta/gamma 1 
E        111936114 ACTB; actin, cytoplasmic 1	K05692 ACTB_G1; actin beta/gamma 1 
E        111925266 MBP; myelin basic protein isoform X1	K17269 MBP; myelin basic protein 
E        111942865 INA; alpha-internexin	K07606 VIM; vimentin 
E        111925128 MYC; myc proto-oncogene protein	K04377 MYC; Myc proto-oncogene protein 
E        111940455 LOW QUALITY PROTEIN: uncharacterized protein LOC111940455	K05495 GDF1; growth differentiation factor 1 
E        111936641 T-box-containing protein TBX6L	K10180 TBX6; T-box protein 6 
D      Trans-acting binding proteins
E        111933168 FUBP1; far upstream element-binding protein 1 isoform X1	K13210 FUBP; far upstream element-binding protein 
E        111936858 FUBP3; far upstream element-binding protein 3	K13210 FUBP; far upstream element-binding protein 
E        111925807 EEF1A1; elongation factor 1-alpha 1	K03231 EEF1A; elongation factor 1-alpha 
E        111938093 EEF1A2; elongation factor 1-alpha 2	K03231 EEF1A; elongation factor 1-alpha 
E        111942607 elongation factor 1-gamma-like	K03233 EEF1G; elongation factor 1-gamma 
E        111924326 HNRNPA2B1; heterogeneous nuclear ribonucleoproteins A2/B1 isoform X1	K13158 HNRNPA2B1; heterogeneous nuclear ribonucleoprotein A2/B1 
E        111939460 HAX1; HCLS1-associated protein X-1	K16220 HAX1; HCLS1-associated protein X-1 
E        111933622 AGFG1; arf-GAP domain and FG repeat-containing protein 1	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
E        111924642 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        111938411 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        111924417 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3	K13197 IGF2BP3; insulin-like growth factor 2 mRNA-binding protein 3 
E        111940298 PTBP1; polypyrimidine tract-binding protein 1 isoform X1	K13218 PTBP1; polypyrimidine tract-binding protein 1 
E        111928175 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111931202 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111934305 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111935439 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
D      Other mRNA localization factors
E        111933364 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        111928507 FMR1; synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        111935493 CYFIP2; cytoplasmic FMR1-interacting protein 2 isoform X1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        111945961 CYFIP1; cytoplasmic FMR1-interacting protein 1 isoform X1	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        111940464 PCBP2; poly(rC)-binding protein 2 isoform X1	K13162 PCBP2; poly(rC)-binding protein 2 
E        111931832 PCBP3; poly(rC)-binding protein 3 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        111935146 PCBP4; poly(rC)-binding protein 4 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        111925338 poly(rC)-binding protein 3-like isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        111930640 CAPRIN1; caprin-1 isoform X1	K18743 CAPRIN1; caprin-1 
E        111936421 CAPRIN2; caprin-2 isoform X1	K18744 CAPRIN2; caprin-2 
E        111938468 YBX1; LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1	K09276 YBX1; Y-box-binding protein 1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        111933509 XRN1; 5'-3' exoribonuclease 1 isoform X1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        111925174 AGO2; protein argonaute-2 isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        111922627 protein argonaute-4	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        111938998 protein argonaute-3	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        111938999 protein argonaute-1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        111929417 EIF4E; eukaryotic translation initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        111945824 eukaryotic translation initiation factor 4E-like isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        111933605 EIF4E2; eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        111940326 UPF1; regulator of nonsense transcripts 1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        111926671 DDX3X; ATP-dependent RNA helicase DDX3X	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        111939207 DDX6; probable ATP-dependent RNA helicase DDX6	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        111943631 RNA-binding protein MEX3A-like	K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
E        111944716 RNA-binding protein MEX3A-like	K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
E        111943376 RNA-binding protein MEX3B	K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
E        111944798 FASTK; fas-activated serine/threonine kinase	K08290 FASTK; Fas-activated serine/threonine kinase [EC:2.7.11.8] 
E        111934703 LSM14A; protein LSM14 homolog A isoform X1	K18749 LSM14; protein LSM14 
E        111938059 LSM14B; protein LSM14 homolog B	K18749 LSM14; protein LSM14 
E        111940464 PCBP2; poly(rC)-binding protein 2 isoform X1	K13162 PCBP2; poly(rC)-binding protein 2 
E        111938468 YBX1; LOW QUALITY PROTEIN: nuclease-sensitive element-binding protein 1	K09276 YBX1; Y-box-binding protein 1 
E        111934707 WTIP; Wilms tumor protein 1-interacting protein	K16682 AJUBA; LIM domain-containing protein 
E        111923895 LIMD1; LIM domain-containing protein 1	K16682 AJUBA; LIM domain-containing protein 
E        111925855 C->U-editing enzyme APOBEC-1-like isoform X1	K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
E        111925864 C->U-editing enzyme APOBEC-1-like isoform X1	K16932 APOBEC1; C->U-editing enzyme APOBEC1 [EC:3.5.4.36] 
E        111939828 MOV10; putative helicase MOV-10	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        111939119 PNRC2; proline-rich nuclear receptor coactivator 2	K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
E        111940858 TNPO1; transportin-1	K18752 TNPO1; transportin-1 
E        111936263 SMG1; serine/threonine-protein kinase SMG1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        111939455 SMG5; protein SMG5 isoform X1	K11125 SMG5; protein SMG5 
E        111937752 SMG6; telomerase-binding protein EST1A isoform X1	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        111932548 SMG7; protein SMG7 isoform X1	K14409 SMG7; protein SMG7 
E        111930282 ZFP36L1; mRNA decay activator protein ZFP36L1	K18753 ZFP36L; butyrate response factor 
E        111938958 LIN28A; protein lin-28 homolog A	K18754 LIN28; protein lin-28 
E        111928237 HTT; huntingtin isoform X1	K04533 HD; huntingtin 
E        111936409 IPO8; importin-8	K18755 IPO8; importin-8 
E        111931557 BICC1; protein bicaudal C homolog 1	K18756 BICC1; protein bicaudal C 
E        111932051 HNRNPA3; heterogeneous nuclear ribonucleoprotein A3 isoform X1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        111932863 PRKACB; cAMP-dependent protein kinase catalytic subunit beta isoform X1	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        111935502 LARP1; la-related protein 1 isoform X1	K18757 LARP1; la-related protein 1 
E        111929070 LARP1B; LOW QUALITY PROTEIN: la-related protein 1B	K18757 LARP1; la-related protein 1 
E        111936418 ATXN2; ataxin-2 isoform X1	K23625 ATXN2_2L; ataxin 2/2L 
D      P-body specific factors
E        111941736 DCP2; m7GpppN-mRNA hydrolase	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        111935130 DCP1A; mRNA-decapping enzyme 1A isoform X1	K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] 
E        111928011 DCP1B; mRNA-decapping enzyme 1B isoform X1	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        111938843 LSM1; U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        111935055 LSM3; U6 snRNA-associated Sm-like protein LSm3 isoform X1	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        111940319 LSM4; U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        111941295 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        111928836 LSM6; U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        111942232 LSM7; U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        111931519 LSM8; LSM8 homolog, U6 small nuclear RNA associated	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        111929775 KLC1; LOW QUALITY PROTEIN: kinesin light chain 1	K10407 KLC; kinesin light chain 
E        111926360 KLC4; kinesin light chain 4 isoform X1	K10407 KLC; kinesin light chain 
E        111934140 MYO5C; unconventional myosin-Vc	K10357 MYO5; myosin V 
E        111933886 MYO5A; unconventional myosin-Va	K10357 MYO5; myosin V 
E        111941036 unconventional myosin-Vb-like	K10357 MYO5; myosin V 
E        111946108 tubulin alpha-8 chain	K07374 TUBA; tubulin alpha 
E        111932170 TUBA4A; tubulin alpha-4A chain isoform X1	K07374 TUBA; tubulin alpha 
E        111923169 TUBAL3; tubulin alpha chain-like 3 isoform X1	K07374 TUBA; tubulin alpha 
E        111933232 tubulin alpha-3 chain	K07374 TUBA; tubulin alpha 
E        111928101 TUBA8; tubulin alpha-8 chain	K07374 TUBA; tubulin alpha 
E        111940573 LOW QUALITY PROTEIN: tubulin alpha-1B chain-like	K07374 TUBA; tubulin alpha 
E        111928175 CPEB2; cytoplasmic polyadenylation element-binding protein 2 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111931202 CPEB3; cytoplasmic polyadenylation element-binding protein 3 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111934305 CPEB1; cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111935439 CPEB4; cytoplasmic polyadenylation element-binding protein 4 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        111935500 GEMIN5; gem-associated protein 5 isoform X1	K13133 GEMIN5; gem associated protein 5 
E        111928271 TACC3; transforming acidic coiled-coil-containing protein 3 isoform X1	K14283 TACC3; transforming acidic coiled-coil-containing protein 3 
E        111934755 TNRC6B; trinucleotide repeat-containing gene 6B protein isoform X1	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        111937256 TNRC6C; trinucleotide repeat-containing gene 6C protein isoform X1	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        111936202 TNRC6A; trinucleotide repeat-containing gene 6A protein isoform X1	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        111934526 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        111932798 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        111944370 CNOT3; CCR4-NOT transcription complex subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        111930365 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        111929501 CNOT6L; CCR4-NOT transcription complex subunit 6-like	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        111935560 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        111935501 CNOT8; CCR4-NOT transcription complex subunit 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        111927998 CNOT7; CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        111934704 uncharacterized protein KIAA0355 homolog	K26671 GARRE1; granule associated Rac and RHOG effector protein 1 
E        111933416 DIS3L2; DIS3-like exonuclease 2 isoform X1	K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
E        111940524 PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        111943862 PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        111923189 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        111935333 protein BTG1-like	K14443 TOB; protein Tob/BTG 
E        111933546 BTG1; protein BTG1	K14443 TOB; protein Tob/BTG 
E        111934516 TOB2; protein Tob2	K14443 TOB; protein Tob/BTG 
E        111939695 BTG2; protein BTG2	K14443 TOB; protein Tob/BTG 
E        111937363 TOB1; protein Tob1	K14443 TOB; protein Tob/BTG 
E        111939402 BTG4; protein BTG4 isoform X1	K14443 TOB; protein Tob/BTG 
E        111936611 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter isoform X1	K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
E        111944007 PATL1; protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        111934278 EDC3; enhancer of mRNA-decapping protein 3	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        111934752 EDC4; enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        111942288 nanos homolog 1-like	K18761 NANOS3; protein nanos 3 
E        111923122 UPF2; regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
E        111922702 UPF3A; regulator of nonsense transcripts 3A	K14328 UPF3; regulator of nonsense transcripts 3 
E        111928658 UPF3B; regulator of nonsense transcripts 3B	K14328 UPF3; regulator of nonsense transcripts 3 
E        111923515 TRIM71; E3 ubiquitin-protein ligase TRIM71	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        111926977 EIF2AK2; interferon-induced, double-stranded RNA-activated protein kinase	K16195 EIF2AK2; eukaryotic translation initiation factor 2-alpha kinase 2 [EC:2.7.11.1] 
E        111928448 ZAR1; zygote arrest protein 1	K18762 ZAR1; zygote arrest protein 1 
E        111921947 ZAR1L; ZAR1-like protein	K18762 ZAR1; zygote arrest protein 1 
E        111924693 YTHDF3; YTH domain-containing family protein 3	K20102 YTHDF; YTH domain-containing family protein 
E        111938084 YTHDF1; YTH domain-containing family protein 1 isoform X1	K20102 YTHDF; YTH domain-containing family protein 
E        111939058 YTHDF2; YTH domain-containing family protein 2	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        111945784 TIAL1; nucleolysin TIAR isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        111938746 TIA1; nucleolysin TIA-1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        111924496 PABPC1; polyadenylate-binding protein 1	K13126 PABPC; polyadenylate-binding protein 
E        111938248 PABPC1L; polyadenylate-binding protein 1-like isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        111939136 PABPC4; polyadenylate-binding protein 4	K13126 PABPC; polyadenylate-binding protein 
E        111924642 STAU2; double-stranded RNA-binding protein Staufen homolog 2 isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        111938411 STAU1; double-stranded RNA-binding protein Staufen homolog 1 isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        111933364 FXR1; fragile X mental retardation syndrome-related protein 1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        111928507 FMR1; synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        111940437 ELAVL1; ELAV-like protein 1 isoform X1	K13088 ELAVL1; ELAV-like protein 1 
E        111935518 G3BP1; ras GTPase-activating protein-binding protein 1 isoform X1	K17265 G3BP1; Ras GTPase-activating protein-binding protein 1 [EC:5.6.2.5 5.6.2.3] 
E        111929469 G3BP2; ras GTPase-activating protein-binding protein 2 isoform X1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        111933246 EIF2A; eukaryotic translation initiation factor 2A isoform X1	K15026 EIF2A; translation initiation factor 2A 
E        111941921 eukaryotic translation initiation factor 2A-like	K15026 EIF2A; translation initiation factor 2A 
E        111936280 EIF3B; eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        111933380 EIF4A2; eukaryotic initiation factor 4A-II	K03257 EIF4A; translation initiation factor 4A 
E        111926649 EIF4A3; eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        111940550 EIF4B; eukaryotic translation initiation factor 4B	K03258 EIF4B; translation initiation factor 4B 
E        111933601 EIF4G1; eukaryotic translation initiation factor 4 gamma 1	K03260 EIF4G; translation initiation factor 4G 
E        111930373 EIF4G2; eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        111938552 EIF4G3; eukaryotic translation initiation factor 4 gamma 3 isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        111922881 RPS6KA3; ribosomal protein S6 kinase alpha-3 isoform X1	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        111928570 RPS6KA6; ribosomal protein S6 kinase alpha-6 isoform X1	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        111939088 RPS6KA1; ribosomal protein S6 kinase alpha-1 isoform X1	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        111926930 RPS6KA2; ribosomal protein S6 kinase alpha-2 isoform X1	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        111936806 RACK1; receptor of activated protein C kinase 1	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        111936895 TRAF2; TNF receptor-associated factor 2 isoform X1	K03173 TRAF2; TNF receptor-associated factor 2 [EC:2.3.2.27] 
E        111932648 TDRD3; tudor domain-containing protein 3	K18404 TDRD3; tudor domain-containing protein 3 
E        111925439 LARP4B; la-related protein 4B isoform X1	K18763 LARP4; la-related protein 4 
E        111940506 LARP4; la-related protein 4 isoform X1	K18763 LARP4; la-related protein 4 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        111935130 DCP1A; mRNA-decapping enzyme 1A isoform X1	K12610 DCP1A; mRNA-decapping enzyme 1A [EC:3.-.-.-] 
E        111928011 DCP1B; mRNA-decapping enzyme 1B isoform X1	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        111941736 DCP2; m7GpppN-mRNA hydrolase	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        111939207 DDX6; probable ATP-dependent RNA helicase DDX6	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        111934278 EDC3; enhancer of mRNA-decapping protein 3	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        111934752 EDC4; enhancer of mRNA-decapping protein 4	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        111944007 PATL1; protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        111938843 LSM1; U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        111935055 LSM3; U6 snRNA-associated Sm-like protein LSm3 isoform X1	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        111940319 LSM4; U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        111941295 LSM5; U6 snRNA-associated Sm-like protein LSm5 isoform X1	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        111928836 LSM6; U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        111942232 LSM7; U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        111931519 LSM8; LSM8 homolog, U6 small nuclear RNA associated	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        111933509 XRN1; 5'-3' exoribonuclease 1 isoform X1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        111926373 XRN2; 5'-3' exoribonuclease 2	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        111939373 DCPS; m7GpppX diphosphatase isoform X1	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        111937570 HELZ; probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
C    3'-5' decay
D      Core exosome factors
E        111931235 EXOSC1; exosome complex component CSL4 isoform X1	K07573 CSL4; exosome complex component CSL4 
E        111937003 EXOSC2; exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        111941579 EXOSC5; exosome complex component RRP46	K12590 RRP46; exosome complex component RRP46 
E        111923586 EXOSC7; exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
E        111943247 EXOSC8; exosome complex component RRP43	K12586 RRP43; exosome complex component RRP43 
E        111929036 EXOSC9; exosome complex component RRP45	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        111923381 DIS3; exosome complex exonuclease RRP44	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        111933967 DIS3L; DIS3-like exonuclease 1	K18681 DIS3L; DIS3-like exonuclease 1 [EC:3.1.13.-] 
E        111938577 EXOSC10; exosome component 10	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        111926514 C1D; nuclear nucleic acid-binding protein C1D	K12592 C1D; exosome complex protein LRP1 
E        111934449 MPHOSPH6; M-phase phosphoprotein 6	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        111934616 PAPD5; non-canonical poly(A) RNA polymerase PAPD5	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        111925393 PAPD7; non-canonical poly(A) RNA polymerase PAPD7 isoform X1	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        111941623 ZCCHC7; zinc finger CCHC domain-containing protein 7	K12597 AIR1_2; protein AIR1/2 
E        111941442 MTREX; exosome RNA helicase MTR4 isoform X1	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        111941540 TTC37; tetratricopeptide repeat protein 37 isoform X1	K12600 SKI3; superkiller protein 3 
E        111934230 WDR61; WD repeat-containing protein 61 isoform X1	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        111929501 CNOT6L; CCR4-NOT transcription complex subunit 6-like	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        111935560 CNOT6; CCR4-NOT transcription complex subunit 6 isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        111934526 CNOT1; CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        111932798 CNOT2; CCR4-NOT transcription complex subunit 2 isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        111944370 CNOT3; CCR4-NOT transcription complex subunit 3	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        111930365 CNOT4; CCR4-NOT transcription complex subunit 4 isoform X1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        111935501 CNOT8; CCR4-NOT transcription complex subunit 8	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        111927998 CNOT7; CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        111932189 CNOT9; CCR4-NOT transcription complex subunit 9 isoform X1	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        111923885 CNOT10; CCR4-NOT transcription complex subunit 10	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
D      Pan complex
E        111940524 PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        111943862 PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        111923189 PAN3; PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        111927668 PNLDC1; poly(A)-specific ribonuclease PNLDC1 isoform X1	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        111935952 PARN; poly(A)-specific ribonuclease PARN isoform X1	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        111933583 DHX36; ATP-dependent RNA helicase DHX36	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        111935333 protein BTG1-like	K14443 TOB; protein Tob/BTG 
E        111933546 BTG1; protein BTG1	K14443 TOB; protein Tob/BTG 
E        111934516 TOB2; protein Tob2	K14443 TOB; protein Tob/BTG 
E        111939695 BTG2; protein BTG2	K14443 TOB; protein Tob/BTG 
E        111937363 TOB1; protein Tob1	K14443 TOB; protein Tob/BTG 
E        111939402 BTG4; protein BTG4 isoform X1	K14443 TOB; protein Tob/BTG 
E        111928919 NOCT; nocturnin	K18764 NOCT; nocturnin [EC:3.1.3.108] 
E        111927817 ERI1; 3'-5' exoribonuclease 1 isoform X1	K18416 THEX1; 3'-5' exoribonuclease 1 [EC:3.1.-.-] 
E        111936001 ERI2; ERI1 exoribonuclease 2	K18417 ERI2; ERI1 exoribonuclease 2 [EC:3.1.-.-] 
E        111939373 DCPS; m7GpppX diphosphatase isoform X1	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        111935313 PDE12; 2',5'-phosphodiesterase 12	K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] 
E        111933897 IREB2; iron-responsive element-binding protein 2	K22416 IREB2; iron-responsive element-binding protein 2 
E        111937570 HELZ; probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
E        111938119 HELZ2; helicase with zinc finger domain 2	K25165 HELZ2; 3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6] 
E        111929898 NRDE2; protein NRDE2 homolog isoform X1	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        111929667 SAMD4A; protein Smaug homolog 1 isoform X1	K27396 SMG; protein Smaug 
E        111940702 FOCAD; focadhesin isoform X1	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
E        111924032 ZC3H12C; probable ribonuclease ZC3H12C isoform X1	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
E        111928623 ZC3H12B; probable ribonuclease ZC3H12B	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
E        111926824 ZC3H12D; probable ribonuclease ZC3H12D	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
E        111938935 ZC3H12A; endoribonuclease ZC3H12A	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        111923874 DROSHA; ribonuclease 3	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        111939256 REXO2; oligoribonuclease, mitochondrial	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        111938676 ENO1; alpha-enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        111938227 ENO2; gamma-enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        111926406 PNPT1; polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        111924068 PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X1	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        111941974 PFKL; ATP-dependent 6-phosphofructokinase, liver type	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        111940514 PFKM; ATP-dependent 6-phosphofructokinase, muscle type	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        111935689 HSPA9; stress-70 protein, mitochondrial isoform X1	K04043 dnaK; molecular chaperone DnaK 
E        111931960 HSPD1; 60 kDa heat shock protein, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        111937003 EXOSC2; exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        111931235 EXOSC1; exosome complex component CSL4 isoform X1	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        111923586 EXOSC7; exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
D      Others
!
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#Last updated: April 25, 2024