+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Ceratitis capitata (Mediterranean fruit fly)</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        101461850 mRNA cap guanine-N7 methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        101454832 mRNA-capping enzyme	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        101455026 cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        101462910 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 isoform X1	K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] 
E        101461463 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2	K14590 CMTR2; cap2 methyltransferase [EC:2.1.1.296] 
E        101456431 RNMT-activating mini protein	K18708 FAM103A1; RNMT-activating mini protein 
D      Cap binding complex
E        101454448 nuclear cap-binding protein subunit 1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        101463327 nuclear cap-binding protein subunit 2	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        101452651 cleavage and polyadenylation specificity factor subunit 5	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        101463414 cleavage and polyadenylation specificity factor subunit CG7185 isoform X2	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        101459473 protein CLP1 homolog	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        101455197 uncharacterized protein LOC101455197 isoform X2	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        101454900 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        101460413 probable cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        101454714 cleavage and polyadenylation specificity factor 73	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        101452917 cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        101451007 pre-mRNA 3'-end-processing factor FIP1	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        101455614 pre-mRNA 3' end processing protein WDR33	K15542 PFS2; polyadenylation factor subunit 2 
E        101454704 WD repeat-containing protein 82	K14962 WDR82; COMPASS component SWD2 
E        101457050 serine/threonine-protein phosphatase beta isoform isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        101450028 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        101449864 serine/threonine-protein phosphatase alpha-1 isoform isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        101453556 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        101463148 cleavage stimulation factor subunit 1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        101454543 cleavage stimulation factor subunit 2	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        101449978 protein suppressor of forked isoform X2	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        101452339 symplekin	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        101460386 small nuclear ribonucleoprotein-associated protein B	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        101450055 small nuclear ribonucleoprotein Sm D3	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        101448334 probable small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        101456550 small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        101454317 probable small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        101452931 U7 snRNA-associated Sm-like protein LSm10	K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 
E        101454371 small nuclear ribonucleoprotein Sm D-like protein	K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 
E        101460413 probable cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        101454714 cleavage and polyadenylation specificity factor 73	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        101454543 cleavage stimulation factor subunit 2	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        101452339 symplekin	K06100 SYMPK; symplekin 
E        101461697 histone RNA hairpin-binding protein	K18710 SLBP; histone RNA hairpin-binding protein 
D      DRB sensitivity inducing factor (DSIF) complex
E        101450343 transcription elongation factor SPT4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        101458490 transcription elongation factor SPT5	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        101448363 probable N6-adenosine-methyltransferase MT-A70-like protein	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        101461928 methyltransferase-like protein 14 homolog	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        101452636 methyltransferase-like protein 4	K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] 
E        101450250 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        101457184 pre-mRNA-splicing regulator female-lethal(2)D	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        101451758 protein virilizer	K22910 VIRMA; protein virilizer 
E        101456747 putative RNA-binding protein 15 isoform X1	K13190 RBM15; RNA-binding protein 15 
E        101448963 uncharacterized protein LOC101448963	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        101460727 poly(A) polymerase type 3	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        101449042 zinc finger protein swm	K13192 RBM26; RNA-binding protein 26 
E        101459254 TAR DNA-binding protein 43 isoform X1	K23600 TARDBP; TAR DNA-binding protein 43 
C    Other processing factors
D      101460011 DNA/RNA-binding protein KIN17	K13102 KIN; DNA/RNA-binding protein KIN17 
D      101462751 methyltransferase-like protein 22	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      101453308 uncharacterized protein LOC101453308 isoform X1	K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] 
D      101451188 zinc finger CCCH domain-containing protein 13	K23038 ZC3H14; zinc finger CCCH domain-containing protein 14 
D      101455308 serrate RNA effector molecule homolog isoform X1	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        101451544 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        101452146 protein mago nashi	K12877 MAGOH; protein mago nashi 
E        101454897 THO complex subunit 4	K12881 THOC4; THO complex subunit 4 
E        101462150 ATP-dependent RNA helicase WM6	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        101450590 ATP-dependent RNA helicase WM6	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        101448725 eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        101461297 coiled-coil domain-containing protein 174	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        101460633 protein CASC3	K14323 CASC3; protein CASC3 
E        101462914 histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        101457608 apoptotic chromatin condensation inducer in the nucleus isoform X1	K12875 ACIN1; apoptotic chromatin condensation inducer in the nucleus 
E        101461841 RNA-binding protein with serine-rich domain 1-B	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        101449517 serine/arginine repetitive matrix protein 1	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        101463363 THO complex subunit 1	K12878 THOC1; THO complex subunit 1 
E        101455534 THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        101456644 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        101454897 THO complex subunit 4	K12881 THOC4; THO complex subunit 4 
E        101448422 THO complex subunit 5	K13174 THOC5; THO complex subunit 5 
E        101463112 THO complex subunit 6	K13175 THOC6; THO complex subunit 6 
E        101457593 THO complex protein 7	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        101459499 PCI domain-containing protein 2 homolog	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        101457107 probable 26S proteasome complex subunit sem1	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        101459819 enhancer of yellow 2 transcription factor	K11368 ENY2; enhancer of yellow 2 transcription factor 
D      Nuclear pore complex
E        101449940 nucleoprotein TPR	K09291 TPR; nucleoprotein TPR 
E        101455898 mRNA export factor	K14298 RAE1; mRNA export factor 
E        101458521 protein SEC13 homolog	K14004 SEC13; protein transport protein SEC13 
E        101455019 nucleoporin Nup37	K14302 NUP37; nuclear pore complex protein Nup37 
E        101453440 nuclear pore complex protein Nup75	K14304 NUP85; nuclear pore complex protein Nup85 
E        101460469 nucleoporin Nup43	K14305 NUP43; nuclear pore complex protein Nup43 
E        101452273 nuclear pore complex protein Nup50	K14295 NUP50; nuclear pore complex protein Nup50 
E        101449678 probable nucleoporin Nup54	K14308 NUP54; nuclear pore complex protein Nup54 
E        101455940 nuclear pore glycoprotein p62	K14306 NUP62; nuclear pore complex protein Nup62 
E        101462853 nuclear pore complex protein Nup88	K14318 NUP88; nuclear pore complex protein Nup88 
E        101455248 nuclear pore complex protein Nup93	K14309 NUP93; nuclear pore complex protein Nup93 
E        101450932 nuclear pore complex protein Nup98-Nup96	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        101461501 nuclear pore complex protein Nup107	K14301 NUP107; nuclear pore complex protein Nup107 
E        101450691 nuclear pore complex protein Nup133	K14300 NUP133; nuclear pore complex protein Nup133 
E        101457997 nucleoporin NUP188 homolog	K14311 NUP188; nuclear pore complex protein Nup188 
E        101453178 nuclear pore complex protein Nup153 isoform X1	K14296 NUP153; nuclear pore complex protein Nup153 
E        101452221 nuclear pore complex protein Nup155	K14312 NUP155; nuclear pore complex protein Nup155 
E        101462303 nuclear pore complex protein Nup160 homolog	K14303 NUP160; nuclear pore complex protein Nup160 
E        101459126 nucleoporin NUP53	K14313 NUP35; nuclear pore complex protein Nup53 
E        101459619 nuclear pore complex protein Nup205 isoform X1	K14310 NUP205; nuclear pore complex protein Nup205 
E        101461071 nuclear pore membrane glycoprotein 210 isoform X2	K14314 NUP210; nuclear pore complex protein Nup210 
E        101455833 nuclear pore complex protein Nup214	K14317 NUP214; nuclear pore complex protein Nup214 
E        101456729 nuclear pore complex protein DDB_G0274915	K14316 POM121; nuclear pore complex protein Nup121 
E        101461590 probable nucleoporin Nup58	K14307 NUPL1; nucleoporin p58/p45 
E        101457651 nucleoporin NUP100/NSP100-like	K14321 NUPL2; nucleoporin-like protein 2 
E        101451808 nucleoporin Ndc1	K14315 NDC1; nucleoporin NDC1 
E        101453141 nucleoporin SEH1	K14299 SEH1; nucleoporin SEH1 
E        101452956 nucleoporin SEH1	K14299 SEH1; nucleoporin SEH1 
E        101454718 E3 SUMO-protein ligase RanBP2	K12172 RANBP2; E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-] 
E        101453574 aladin	K14320 AAAS; aladin 
E        101451196 nucleoporin GLE1	K18723 GLE1; nucleoporin GLE1 
E        101458215 nuclear RNA export factor 1	K14284 NXF; nuclear RNA export factor 
E        101451673 NTF2-related export protein	K14285 NXT1_2; NTF2-related export protein 1/2 
D      Ran-mediated transport factors
E        101451054 GTP-binding nuclear protein Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        101448985 acidic leucine-rich nuclear phosphoprotein 32 family member A	K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D 
E        101461306 protein elav isoform X2	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        101450344 ELAV-like protein 2	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        101460244 ELAV-like protein 3 isoform X4	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        101455252 FAS-associated factor 2 isoform X1	K18726 FAF2; FAS-associated factor 2 
E        101458543 transitional endoplasmic reticulum ATPase TER94 isoform X2	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        101456358 exportin-1	K14290 XPO1; exportin-1 
E        101453516 ran-binding protein 16 isoform X1	K18460 XPO7; exportin-7 
E        101448598 ran GTPase-activating protein	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        101456765 eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        101463348 eukaryotic translation initiation factor 4E isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        101455550 eukaryotic initiation factor 4A	K03257 EIF4A; translation initiation factor 4A 
E        101454072 eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        101452236 eukaryotic translation initiation factor 4B	K03258 EIF4B; translation initiation factor 4B 
E        101462987 eukaryotic translation initiation factor 4H isoform X1	K24086 EIF4H; translation initiation factor 4H 
E        101451157 eukaryotic translation initiation factor 4E-binding protein 3	K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 
E        101451976 LOW QUALITY PROTEIN: myb-like protein O	K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
E        105665230 protein angel	K18729 ANGEL; protein angel 
E        101455362 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        101455743 cytoplasmic FMR1-interacting protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        101461567 cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        101450569 ATP-dependent RNA helicase bel	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        101462028 GIGYF family protein CG11148 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        101450565 polyadenylate-binding protein	K13126 PABPC; polyadenylate-binding protein 
E        101459406 polyadenylate-binding protein-interacting protein 1	K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 
E        101459485 polyadenylate-binding protein-interacting protein 2	K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
E        101453623 helicase SKI2W	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        101460769 deformed epidermal autoregulatory factor 1	K23041 DEAF1; deformed epidermal autoregulatory factor 1 
E        101455680 malignant T-cell-amplified sequence 1 homolog	K07575 MCTS; malignant T-cell-amplified sequence 
E        101454555 density-regulated protein homolog	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        101459075 partner of Y14 and mago	K14294 WIBG; partner of Y14 and mago 
E        101451096 heterogeneous nuclear ribonucleoprotein A1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        101459984 heterogeneous nuclear ribonucleoprotein 87F isoform X2	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        101451278 ribonucleoprotein RB97D isoform X2	K14411 MSI; RNA-binding protein Musashi 
E        101459213 RNA-binding protein Musashi homolog Rbp6 isoform X3	K14411 MSI; RNA-binding protein Musashi 
E        101453119 poly(U)-binding-splicing factor PUF60 isoform X2	K14411 MSI; RNA-binding protein Musashi 
E        101448917 ribonucleoprotein RB97D	K14411 MSI; RNA-binding protein Musashi 
E        101454976 heterogeneous nuclear ribonucleoprotein 27C	K14411 MSI; RNA-binding protein Musashi 
E        101457836 HBS1-like protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        101451687 protein pelota isoform X1	K06965 PELO; protein pelota 
E        101460704 polyadenylate-binding protein 2 isoform X2	K14396 PABPN1; polyadenylate-binding protein 2 
E        101453483 polyadenylate-binding protein 2-like	K14396 PABPN1; polyadenylate-binding protein 2 
E        101461181 DEAD-box helicase Dbp80	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        101457958 pre-mRNA-splicing factor SYF1 isoform X1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        101459192 uncharacterized protein LOC101459192	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        101456385 uncharacterized protein LOC101456385	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        101455673 regulator of chromosome condensation	K11493 RCC1; regulator of chromosome condensation 
E        101453449 uncharacterized protein LOC101453449	K18733 LARP6; la-related protein 6 
E        101450159 transcriptional activator protein Pur-beta	K21772 PURA; transcriptional activator protein Pur-alpha 
E        101459930 polymerase delta-interacting protein 3	K22414 POLDIP3; polymerase delta-interacting protein 3 
E        101459841 leukocyte receptor cluster member 8 homolog	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        101460183 eukaryotic peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        101453306 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1	K03267 ERF3; peptide chain release factor subunit 3 
E        101455775 regulator of nonsense transcripts 1 homolog	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        101461961 regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
E        101453630 regulator of nonsense transcripts 3B	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        101450316 serine/threonine-protein phosphatase PP2A	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        101462621 serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit isoform X1	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        101453582 protein phosphatase PP2A 55 kDa regulatory subunit isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        101449069 hyphally regulated cell wall protein 3	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        105665108 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        101461464 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        101453235 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        101453475 serine/threonine-protein kinase Smg1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        101459744 protein SMG5	K11125 SMG5; protein SMG5 
E        101457058 telomerase-binding protein EST1A	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        101462162 protein SMG8	K18734 SMG8; protein SMG8 
E        101457327 protein SMG9	K18735 SMG9; protein SMG9 
E        101462028 GIGYF family protein CG11148 isoform X1	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        101463240 selenocysteine insertion sequence-binding protein 2-like	K19539 SECISBP2; selenocysteine insertion sequence-binding protein 2 
E        101452358 probable ATP-dependent RNA helicase DHX34	K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] 
E        101449516 GTP-binding protein 1	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        101454189 protein penguin	K14844 PUF6; pumilio homology domain family member 6 
E        101458853 unconventional myosin-Va isoform X1	K10357 MYO5; myosin V 
E        101456992 protein bicaudal D	K18739 BICD; protein bicaudal D 
E        101463083 putative uncharacterized protein DDB_G0271606	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
E        101458512 actin, cytoplasmic A3a	K05692 ACTB_G1; actin beta/gamma 1 
E        101454507 myc protein	K04377 MYC; Myc proto-oncogene protein 
E        101463463 T-box transcription factor TBX3	K10180 TBX6; T-box protein 6 
E        101452710 T-box protein 2	K10180 TBX6; T-box protein 6 
E        101451248 protein nanos-like	K18741 NANOS1; protein nanos 1 
E        101450245 maternal effect protein oskar isoform X1	K18742 OSK; maternal effect protein oskar 
E        101449988 DNA-binding protein K10	K02524 K10; DNA binding protein (fs(1)K10, female sterile(1)K10) 
E        101461848 protein gurken	K02447 GRK; protein gruken 
E        101461582 protein deadpan	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101460286 enhancer of split m8 protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101460464 enhancer of split m7 protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101460653 enhancer of split m8 protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101461003 enhancer of split m3 protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101461720 enhancer of split mbeta protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101462022 enhancer of split mgamma protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101462201 enhancer of split mdelta protein	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101448439 protein hairy	K09090 HESN; hairy and enhancer of split, invertebrate 
E        101450660 protein hairy	K09090 HESN; hairy and enhancer of split, invertebrate 
D      Trans-acting binding proteins
E        101452637 far upstream element-binding protein 3	K13210 FUBP; far upstream element-binding protein 
E        101463492 elongation factor 1-alpha 2	K03231 EEF1A; elongation factor 1-alpha 
E        101450108 elongation factor 1-alpha 1	K03231 EEF1A; elongation factor 1-alpha 
E        101456666 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
E        101463316 uncharacterized protein LOC101463316 isoform X1	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
E        101454268 polypyrimidine tract-binding protein 1 isoform X1	K13218 PTBP1; polypyrimidine tract-binding protein 1 
E        101451889 RNA-binding protein squid isoform X1	K03102 SQD; squid 
E        101461567 cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
D      Other mRNA localization factors
E        101455362 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        101455743 cytoplasmic FMR1-interacting protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        101452041 CAR1 transcription factor isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        101457249 caprin homolog	K18743 CAPRIN1; caprin-1 
E        101455154 CUGBP Elav-like family member 2	K02177 BRU; bruno 
E        101459476 maternal protein exuperantia	K18745 EXU; maternal protein exuperantia 
E        101449487 nuclease-sensitive element-binding protein 1	K09276 YBX1; Y-box-binding protein 1 
E        101457121 protein cup	K18746 CUP; protein cup 
E        101454489 sex-lethal homolog	K18747 SXL; protein sex-lethal 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        101451936 5'-3' exoribonuclease 1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        101458572 protein argonaute-2 isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        101450212 protein argonaute-2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        101456765 eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        101463348 eukaryotic translation initiation factor 4E isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        101455775 regulator of nonsense transcripts 1 homolog	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        101450569 ATP-dependent RNA helicase bel	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        101462446 putative ATP-dependent RNA helicase me31b	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        111591708 uncharacterized protein LOC111591708	K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
E        101456839 protein LSM14 homolog B-A isoform X1	K18749 LSM14; protein LSM14 
E        101449487 nuclease-sensitive element-binding protein 1	K09276 YBX1; Y-box-binding protein 1 
E        101455417 LIM domain-containing protein jub	K16682 AJUBA; LIM domain-containing protein 
E        101456314 putative helicase MOV-10	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        101450027 putative helicase MOV-10 isoform X1	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        101455171 transportin-1	K18752 TNPO1; transportin-1 
E        101453475 serine/threonine-protein kinase Smg1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        101459744 protein SMG5	K11125 SMG5; protein SMG5 
E        101457058 telomerase-binding protein EST1A	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        101455077 protein TIS11 isoform X1	K15308 TTP; tristetraprolin 
E        101457435 protein lin-28 homolog	K18754 LIN28; protein lin-28 
E        101450258 uncharacterized protein LOC101450258	K04533 HD; huntingtin 
E        101451492 protein bicaudal C	K18756 BICC1; protein bicaudal C 
E        101451096 heterogeneous nuclear ribonucleoprotein A1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        101459984 heterogeneous nuclear ribonucleoprotein 87F isoform X2	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        101449493 cAMP-dependent protein kinase catalytic subunit	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        101454930 la-related protein 1	K18757 LARP1; la-related protein 1 
E        101451002 ataxin-2 homolog	K23625 ATXN2_2L; ataxin 2/2L 
D      P-body specific factors
E        101455465 mRNA decapping complex subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        101451782 uncharacterized protein LOC101451782	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        101461495 U6 snRNA-associated Sm-like protein LSm1 isoform X1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        101454738 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        101461968 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        101457891 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        101458622 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        101457739 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        101456511 U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        101449095 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        101448536 kinesin light chain isoform X1	K10407 KLC; kinesin light chain 
E        101458853 unconventional myosin-Va isoform X1	K10357 MYO5; myosin V 
E        101451690 tubulin alpha-4 chain	K07374 TUBA; tubulin alpha 
E        101460825 tubulin alpha-1 chain	K07374 TUBA; tubulin alpha 
E        101459628 tubulin alpha-1 chain	K07374 TUBA; tubulin alpha 
E        101461567 cytoplasmic polyadenylation element-binding protein	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        101448312 protein Gawky isoform X1	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        101452793 CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        101462429 regulator of gene activity isoform X2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        101457336 CCR4-NOT transcription complex subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        101461785 alpha-protein kinase 1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        101463337 CCR4-NOT transcription complex subunit 6-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        101455213 CCR4-NOT transcription complex subunit 7 isoform X1	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        101454637 PAN2-PAN3 deadenylation complex catalytic subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        101459772 PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        101449994 protein Tob1	K14443 TOB; protein Tob/BTG 
E        101451976 LOW QUALITY PROTEIN: myb-like protein O	K18728 EIF4ENIF1; eukaryotic translation initiation factor 4E transporter 
E        101461158 uncharacterized protein LOC101461158	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        101454742 enhancer of mRNA-decapping protein 3 isoform X1	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        101461092 enhancer of mRNA-decapping protein 4 homolog	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        101461961 regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
E        101453630 regulator of nonsense transcripts 3B	K14328 UPF3; regulator of nonsense transcripts 3 
E        101454119 uncharacterized protein LOC101454119 isoform X1	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        101458319 protein wech	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        101449252 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        101459766 YTH domain-containing family protein 2	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        101450237 nucleolysin TIA-1 isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        101448525 nucleolysin TIAR isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        101460594 nucleolysin TIA-1 isoform X1	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        101450565 polyadenylate-binding protein	K13126 PABPC; polyadenylate-binding protein 
E        101455362 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        101451717 ras GTPase-activating protein-binding protein 1	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        101453015 eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        101454839 eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        101455550 eukaryotic initiation factor 4A	K03257 EIF4A; translation initiation factor 4A 
E        101448725 eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        101452236 eukaryotic translation initiation factor 4B	K03258 EIF4B; translation initiation factor 4B 
E        101454072 eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        101454794 ribosomal protein S6 kinase 2 beta	K04373 RPS6KA; ribosomal protein S6 kinase alpha-1/2/3/6 [EC:2.7.11.1] 
E        101452438 guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        101458215 nuclear RNA export factor 1	K14284 NXF; nuclear RNA export factor 
E        101454693 histone deacetylase 6 isoform X1	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
E        101460587 tudor domain-containing protein 3	K18404 TDRD3; tudor domain-containing protein 3 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        101451782 uncharacterized protein LOC101451782	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        101455465 mRNA decapping complex subunit 2	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        101462446 putative ATP-dependent RNA helicase me31b	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        101454742 enhancer of mRNA-decapping protein 3 isoform X1	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        101461092 enhancer of mRNA-decapping protein 4 homolog	K12616 EDC4; enhancer of mRNA-decapping protein 4 
E        101461158 uncharacterized protein LOC101461158	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        101461495 U6 snRNA-associated Sm-like protein LSm1 isoform X1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        101454738 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        101461968 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        101457891 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        101458622 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        101457739 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        101456511 U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        101449095 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        101451936 5'-3' exoribonuclease 1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        101461661 5'-3' exoribonuclease 2 homolog	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        101461473 m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        101456441 probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
C    3'-5' decay
D      Core exosome factors
E        101463385 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
E        101463153 exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        101456835 exosome complex component RRP40	K03681 RRP40; exosome complex component RRP40 
E        101457286 exosome complex component RRP41	K11600 RRP41; exosome complex component RRP41 
E        101452038 exosome complex component RRP46	K12590 RRP46; exosome complex component RRP46 
E        101452028 exosome complex component MTR3	K12587 MTR3; exosome complex component MTR3 
E        101449199 exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
E        101457526 exosome complex component RRP43 isoform X1	K12586 RRP43; exosome complex component RRP43 
E        101456664 exosome complex component RRP45	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        101450574 exosome complex exonuclease RRP44	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        101457607 exosome component 10	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        101456812 nuclear nucleic acid-binding protein C1D	K12592 C1D; exosome complex protein LRP1 
E        101455212 M-phase phosphoprotein 6	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        101453337 non-canonical poly(A) RNA polymerase protein Trf4-1 isoform X1	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        101455726 superkiller viralicidic activity 2-like 2 isoform X2	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        101453623 helicase SKI2W	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        101455431 tetratricopeptide repeat protein 37	K12600 SKI3; superkiller protein 3 
E        101450655 WD repeat-containing protein 61	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        101463337 CCR4-NOT transcription complex subunit 6-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        101452793 CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        101462429 regulator of gene activity isoform X2	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        101457336 CCR4-NOT transcription complex subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        101461785 alpha-protein kinase 1	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        101455213 CCR4-NOT transcription complex subunit 7 isoform X1	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        101448339 CCR4-NOT transcription complex subunit 9	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        101461878 CCR4-NOT transcription complex subunit 10 isoform X1	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
D      Pan complex
E        101454637 PAN2-PAN3 deadenylation complex catalytic subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        101459772 PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        110117504 ATP-dependent RNA helicase DHX36	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        101449994 protein Tob1	K14443 TOB; protein Tob/BTG 
E        101460917 nocturnin isoform X3	K18764 NOCT; nocturnin [EC:3.1.3.108] 
E        101461473 m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        101452889 2',5'-phosphodiesterase 12	K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] 
E        101456441 probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
E        101456941 protein NRDE2 homolog	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        101451759 protein Smaug isoform X1	K27396 SMG; protein Smaug 
E        101448395 focadhesin	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        101460100 ribonuclease 3	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        101453249 probable oligoribonuclease	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        101456782 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        101451878 polyribonucleotide nucleotidyltransferase 1, mitochondrial	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        101463030 ATP-dependent 6-phosphofructokinase isoform X2	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        101458177 ATP-dependent 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        101463349 heat shock 70 kDa protein cognate 5	K04043 dnaK; molecular chaperone DnaK 
E        101461102 60 kDa heat shock protein, mitochondrial	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        101463153 exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        101463385 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        101457286 exosome complex component RRP41	K11600 RRP41; exosome complex component RRP41 
E        101449199 exosome complex component RRP42	K12589 RRP42; exosome complex component RRP42 
D      Others
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#<hr>
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#Last updated: April 25, 2024