+E Transcription factors KO #

  Transcription Factors - Clostridium cellulovorans

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins D Clocel_0751 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Clocel_0773 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Clocel_3986 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Clocel_4007 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] D Clocel_4008 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37] C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D Clocel_2618 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D Clocel_0699 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein D Clocel_4318 transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator D Clocel_0186 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_0210 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_1053 transcription activator effector binding K13653 K13653; AraC family transcriptional regulator D Clocel_1069 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_3345 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_3292 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_3937 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_0173 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_2524 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_2979 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator D Clocel_4055 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator C LysR family D Clocel_1404 transcriptional regulator, LysR family K19242 citR; LysR family transcriptional regulator, repressor for citA C DeoR family D Clocel_0074 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D Clocel_3043 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D D Clocel_1453 CBS domain containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator C LacI family D Clocel_0378 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Clocel_0354 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Clocel_1173 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Clocel_3206 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Clocel_4077 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Clocel_4086 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Clocel_4052 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Clocel_1513 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor D Clocel_0517 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D Clocel_0518 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG C GntR family D Clocel_1253 regulatory protein GntR HTH K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D Clocel_0494 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D Clocel_2689 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase D Clocel_0055 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family D Clocel_0472 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator C Lrp/AsnC family D Clocel_1594 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA D Clocel_4248 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein C LuxR family D Clocel_3260 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein D Clocel_3249 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein C MarR family D Clocel_1532 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator D Clocel_1094 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator C MerR family D Clocel_1468 transcriptional regulator, MerR family K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator D Clocel_0637 cobalamin B12-binding domain protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator D Clocel_0636 transcriptional regulator, XRE family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator C Fur family D Clocel_1834 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Clocel_2920 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D Clocel_1576 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D Clocel_2264 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family D Clocel_1000 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D Clocel_0231 putative transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Clocel_1200 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein D Clocel_3008 putative transcriptional regulator, Crp/Fnr family K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator C Rrf2 family D Clocel_1825 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor D Clocel_2477 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D Clocel_0243 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Clocel_1029 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D Clocel_0346 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor D Clocel_1031 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family D Clocel_2271 helix-turn-helix domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family D Clocel_3100 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Clocel_0180 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Clocel_3610 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Clocel_3513 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Clocel_1065 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Clocel_1607 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Clocel_3847 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Clocel_1421 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator D Clocel_2980 transcriptional regulator PadR family protein K10947 K10947; PadR family transcriptional regulator C Other families D Clocel_2131 iron (metal) dependent repressor, DtxR family K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator D Clocel_0652 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator D Clocel_0458 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D Clocel_4146 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D Clocel_0755 helix-turn-helix domain protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator D Clocel_3810 purine operon repressor, PurR K09685 purR; HTH-type transcriptional regulator, purine operon repressor D Clocel_2977 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor D Clocel_1773 GTP-sensing pleiotropic transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor D Clocel_0988 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Clocel_3304 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Clocel_3551 putative transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator D Clocel_2655 hypothetical protein K07727 K07727; putative transcriptional regulator D Clocel_0136 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Clocel_3689 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Clocel_1007 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator D Clocel_0467 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family D Clocel_1266 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI C Other families B Other transcription factors C BglG family D Clocel_1016 transcriptional antiterminator, BglG K03488 licT; beta-glucoside operon transcriptional antiterminator D Clocel_3883 transcriptional antiterminator, BglG K03480 glcT; transcriptional antiterminator D Clocel_2407 transcriptional antiterminator, BglG K03483 mtlR; mannitol operon transcriptional activator C Others D Clocel_0700 FMN-binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D Clocel_3458 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D Clocel_2132 transcriptional regulator, CdaR K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein D Clocel_0048 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D Clocel_0109 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D Clocel_3572 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D Clocel_3800 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D Clocel_4376 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Clocel_4378 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Clocel_2354 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D Clocel_3230 transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D Clocel_1940 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism D Clocel_1414 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D Clocel_3763 transcriptional repressor, CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D Clocel_0718 transcriptional regulator, DeoR family K05311 cggR; central glycolytic genes regulator D Clocel_1767 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0