+E Transcription factors KO
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Transcription Factors - Clostridium cellulovorans
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D Clocel_0751 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Clocel_0773 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Clocel_3986 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Clocel_4007 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D Clocel_4008 DNA-cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Clocel_2618 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D Clocel_0699 transcriptional regulator, AraC family K02099 araC; AraC family transcriptional regulator, arabinose operon regulatory protein
D Clocel_4318 transcriptional regulator, AraC family K13652 K13652; AraC family transcriptional regulator
D Clocel_0186 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_0210 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_1053 transcription activator effector binding K13653 K13653; AraC family transcriptional regulator
D Clocel_1069 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_3345 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_3292 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_3937 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_0173 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_2524 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_2979 transcriptional regulator, AraC family K13653 K13653; AraC family transcriptional regulator
D Clocel_4055 transcriptional regulator, AraC family K07506 K07506; AraC family transcriptional regulator
C LysR family
D Clocel_1404 transcriptional regulator, LysR family K19242 citR; LysR family transcriptional regulator, repressor for citA
C DeoR family
D Clocel_0074 transcriptional regulator, DeoR family K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Clocel_3043 sporulation transcriptional regulator SpoIIID K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D Clocel_1453 CBS domain containing protein K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D Clocel_0378 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocel_0354 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocel_1173 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocel_3206 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocel_4077 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocel_4086 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocel_4052 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocel_1513 transcriptional regulator, LacI family K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Clocel_0517 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D Clocel_0518 transcriptional regulator, LacI family K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
C GntR family
D Clocel_1253 regulatory protein GntR HTH K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D Clocel_0494 GntR domain protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex
D Clocel_2689 transcriptional regulator, GntR family with aminotransferase domain K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Clocel_0055 transcriptional regulator, GntR family K07979 ytrA; GntR family transcriptional regulator
C TetR/AcrR family
D Clocel_0472 transcriptional regulator, TetR family K09017 rutR; TetR/AcrR family transcriptional regulator
C Lrp/AsnC family
D Clocel_1594 transcriptional regulator, AsnC family K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D Clocel_4248 transcriptional regulator, AsnC family K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D Clocel_3260 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
D Clocel_3249 ATP-dependent transcriptional regulator, MalT-like, LuxR family K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D Clocel_1532 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
D Clocel_1094 transcriptional regulator, MarR family K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Clocel_1468 transcriptional regulator, MerR family K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D Clocel_0637 cobalamin B12-binding domain protein K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
D Clocel_0636 transcriptional regulator, XRE family K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D Clocel_1834 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Clocel_2920 ferric uptake regulator, Fur family K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Clocel_1576 ferric uptake regulator, Fur family K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D Clocel_2264 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D Clocel_1000 transcriptional regulator, Crp/Fnr family K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Clocel_0231 putative transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Clocel_1200 transcriptional regulator, Crp/Fnr family K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Clocel_3008 putative transcriptional regulator, Crp/Fnr family K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D Clocel_1825 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Clocel_2477 transcriptional regulator, BadM/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D Clocel_0243 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Clocel_1029 transcriptional regulator, ArsR family K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Clocel_0346 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Clocel_1031 transcriptional regulator, ArsR family K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D Clocel_2271 helix-turn-helix domain protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D Clocel_3100 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Clocel_0180 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Clocel_3610 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Clocel_3513 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Clocel_1065 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Clocel_1607 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Clocel_3847 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Clocel_1421 transcriptional regulator, PadR-like family K10947 K10947; PadR family transcriptional regulator
D Clocel_2980 transcriptional regulator PadR family protein K10947 K10947; PadR family transcriptional regulator
C Other families
D Clocel_2131 iron (metal) dependent repressor, DtxR family K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D Clocel_0652 iron (metal) dependent repressor, DtxR family K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Clocel_0458 transcriptional repressor, CopY family K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Clocel_4146 biotin/acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Clocel_0755 helix-turn-helix domain protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D Clocel_3810 purine operon repressor, PurR K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D Clocel_2977 CoA-binding domain protein K01926 rex; redox-sensing transcriptional repressor
D Clocel_1773 GTP-sensing pleiotropic transcriptional repressor CodY K03706 codY; transcriptional pleiotropic repressor
D Clocel_0988 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D Clocel_3304 transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D Clocel_3551 putative transcriptional regulator, XRE family K07727 K07727; putative transcriptional regulator
D Clocel_2655 hypothetical protein K07727 K07727; putative transcriptional regulator
D Clocel_0136 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D Clocel_3689 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D Clocel_1007 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
D Clocel_0467 transcriptional regulator, XRE family K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
D Clocel_1266 hypothetical protein K07723 ndoAI; CopG family transcriptional regulator / antitoxin EndoAI
C Other families
B Other transcription factors
C BglG family
D Clocel_1016 transcriptional antiterminator, BglG K03488 licT; beta-glucoside operon transcriptional antiterminator
D Clocel_3883 transcriptional antiterminator, BglG K03480 glcT; transcriptional antiterminator
D Clocel_2407 transcriptional antiterminator, BglG K03483 mtlR; mannitol operon transcriptional activator
C Others
D Clocel_0700 FMN-binding domain protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator
D Clocel_3458 protein of unknown function DUF156 K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Clocel_2132 transcriptional regulator, CdaR K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Clocel_0048 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Clocel_0109 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Clocel_3572 transcriptional regulator, AbrB family K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Clocel_3800 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D Clocel_4376 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Clocel_4378 parB-like partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Clocel_2354 ParB domain protein nuclease K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Clocel_3230 transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Clocel_1940 arginine repressor, ArgR K03402 argR; transcriptional regulator of arginine metabolism
D Clocel_1414 heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D Clocel_3763 transcriptional repressor, CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response
D Clocel_0718 transcriptional regulator, DeoR family K05311 cggR; central glycolytic genes regulator
D Clocel_1767 Uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024
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Classification taken and modified from TRANSFAC 7.0