+D GENES KO
#
KEGG Orthology (KO) - Campylobacter coli RM1875
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ccf00010]
D YSQ_01225 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YSQ_05210 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSQ_02585 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSQ_01865 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YSQ_01855 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YSQ_01860 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YSQ_07690 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YSQ_09570 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSQ_07925 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YSQ_01530 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YSQ_07175 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSQ_07170 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSQ_03140 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D YSQ_01150 NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D YSQ_01215 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSQ_01835 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSQ_04565 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:ccf00020]
D YSQ_09610 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D YSQ_08565 methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D YSQ_05230 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YSQ_07200 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YSQ_07175 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSQ_07170 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSQ_07165 oorC; 2-oxoglutarate:acceptor oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D YSQ_07180 oorD; 2-oxoglutarate:acceptor oxidoreductase K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D YSQ_07185 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YSQ_07190 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YSQ_07840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSQ_02030 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YSQ_07195 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSQ_07920 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D YSQ_03835 acetyl-CoA carboxylase subunit alpha K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YSQ_04560 biotin attachment protein K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YSQ_04565 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YSQ_01530 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:ccf00030]
D YSQ_01225 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YSQ_07610 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YSQ_00575 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YSQ_08505 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YSQ_04600 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YSQ_01835 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSQ_04635 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YSQ_02585 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSQ_05210 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:ccf00040]
D YSQ_07430 altronate hydrolase K16849 uxaA1; altronate dehydratase small subunit [EC:4.2.1.7]
D YSQ_07425 altronate hydrolase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7]
D YSQ_01220 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSQ_07610 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:ccf00051]
D YSQ_01835 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSQ_01725 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YSQ_07415 short-chain dehydrogenase K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]
D YSQ_07435 dihydrodipicolinate synthase K26911 fucH; 2-dehydro-3-deoxy-L-fuconate aldolase [EC:4.1.2.64]
D YSQ_05210 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSQ_02585 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSQ_01865 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YSQ_01730 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D YSQ_04600 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:ccf00052]
D YSQ_03315 UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSQ_01220 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSQ_01835 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:ccf00500]
D YSQ_01220 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSQ_01835 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSQ_01225 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ccf00520]
D YSQ_02025 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YSQ_08085 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D YSQ_05300 glmU; N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YSQ_04795 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YSQ_09590 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YSQ_07315 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D YSQ_03250 WxcM-like protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
D YSQ_02395 N-acetyl glucosamine/N-acetyl galactosamine epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D YSQ_02390 C4 aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D YSQ_02280 N-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D YSQ_02285 nucleotidase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D YSQ_02260 N-acetylneuraminate synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D YSQ_02290 CMP-N-acetylneuraminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D YSQ_03365 UDP-GlcNAc C4,6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D YSQ_03360 aminotransferase DegT K15910 pglE; UDP-N-acetylbacillosamine transaminase [EC:2.6.1.34]
D YSQ_03355 acetyltransferase K15913 pglD; UDP-N-acetylbacillosamine N-acetyltransferase [EC:2.3.1.203]
D YSQ_02210 UDP-N-acetylglucosamine 2-epimerase K18429 legG; GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolysing) [EC:3.2.1.184]
D YSQ_02215 hypothetical protein K18430 legI; N,N'-diacetyllegionaminate synthase [EC:2.5.1.101]
D YSQ_02195 Post-translational flagellin modification protein B K18431 legF; CMP-N,N'-diacetyllegionaminic acid synthase [EC:2.7.7.82]
D YSQ_01835 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSQ_01220 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSQ_03315 UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSQ_01225 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YSQ_01730 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D YSQ_02245 aminotransferase DegT K13010 per; perosamine synthetase [EC:2.6.1.102]
D YSQ_01725 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
C 00620 Pyruvate metabolism [PATH:ccf00620]
D YSQ_01215 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSQ_01530 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YSQ_07175 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSQ_07170 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSQ_01150 NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D YSQ_05900 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YSQ_05905 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSQ_07925 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YSQ_07660 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YSQ_02405 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YSQ_02410 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YSQ_09265 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YSQ_03140 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D YSQ_00970 oxidoreductase K18930 dld; D-lactate dehydrogenase
D YSQ_07395 aldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D YSQ_05355 beta-lactamase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D YSQ_02425 malate dehydrogenase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YSQ_03835 acetyl-CoA carboxylase subunit alpha K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YSQ_04560 biotin attachment protein K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YSQ_07195 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSQ_07920 malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D YSQ_02030 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YSQ_07840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSQ_04565 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YSQ_07135 integral memnbrane protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D YSQ_09815 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ccf00630]
D YSQ_01215 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSQ_07195 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSQ_09610 gltA; type II citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D YSQ_08565 methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D YSQ_05230 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YSQ_02900 FAD-binding protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D YSQ_04085 oxidoreductase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D YSQ_01105 catalase K03781 katE; catalase [EC:1.11.1.6]
D YSQ_01925 catalase K03781 katE; catalase [EC:1.11.1.6]
D YSQ_02755 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YSQ_01525 hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YSQ_01795 haloacid dehalogenase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D YSQ_05855 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSQ_07875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YSQ_07395 aldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D YSQ_01325 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YSQ_01330 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YSQ_01335 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YSQ_01340 formate dehydrogenase K00127 fdoI; formate dehydrogenase subunit gamma
D YSQ_05440 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:ccf00640]
D YSQ_01215 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSQ_08575 acyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D YSQ_05900 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YSQ_05905 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSQ_07660 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YSQ_02405 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YSQ_02410 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YSQ_09265 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YSQ_07190 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YSQ_07185 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YSQ_08565 methylcitrate synthase K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D YSQ_08560 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D YSQ_05230 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YSQ_08570 prpB; 2-methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D YSQ_03140 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:ccf00650]
D YSQ_07840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSQ_01530 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YSQ_07175 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSQ_07170 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSQ_02475 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YSQ_02480 acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:ccf00660]
D YSQ_02475 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YSQ_02480 acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YSQ_07645 L-carnitine dehydratase K18289 ict-P; itaconate CoA-transferase [EC:2.8.3.- 2.8.3.22]
D YSQ_07190 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YSQ_07185 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YSQ_07650 hypothetical protein K18291 ich-P; itaconyl-CoA hydratase / mesaconyl-C4 CoA hydratase [EC:4.2.1.56 4.2.1.-]
D YSQ_09805 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YSQ_09800 leuD; isopropylmalate isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YSQ_09810 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ccf00562]
D YSQ_09260 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YSQ_01865 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ccf00190]
D YSQ_01000 NADH dehydrogenase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D YSQ_01005 NADH dehydrogenase subunit B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D YSQ_01010 NADH dehydrogenase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D YSQ_01015 NADH dehydrogenase subunit D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D YSQ_01020 NADH-ubiquinone oxidoreductase chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D YSQ_01025 NADH dehydrogenase K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D YSQ_01030 NADH dehydrogenase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D YSQ_01035 NADH:ubiquinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D YSQ_01040 NADH dehydrogenase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D YSQ_01045 NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D YSQ_01050 NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D YSQ_01055 NADH:ubiquinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D YSQ_01060 NADH:ubiquinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D YSQ_01065 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D YSQ_07840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSQ_03055 ubiquinol cytochrome C oxidoreductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D YSQ_03060 ubiquinol cytochrome C oxidoreductase K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D YSQ_03065 cytochrome C K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D YSQ_01450 cytochrome oxidase subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D YSQ_01455 peptidase S13 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D YSQ_01460 cytochrome B561 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D YSQ_01465 cytochrome CBB3 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D YSQ_00405 cytochrome C oxidase subunit II K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YSQ_00410 cytochrome C oxidase assembly protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YSQ_02815 cytochrome C553 K08738 CYC; cytochrome c
D YSQ_03195 cytochrome C K08738 CYC; cytochrome c
D YSQ_09380 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YSQ_09370 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YSQ_09375 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YSQ_09385 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YSQ_09365 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YSQ_02965 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YSQ_09390 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YSQ_09395 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YSQ_04545 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YSQ_06115 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D YSQ_02055 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YSQ_06280 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:ccf00710]
D YSQ_01860 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YSQ_01855 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YSQ_02585 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSQ_05210 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSQ_00575 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D YSQ_04600 ribose 5-phosphate isomerase K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D YSQ_01865 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YSQ_07610 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D YSQ_08505 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D YSQ_04565 phosphoenolpyruvate carboxykinase K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D YSQ_02425 malate dehydrogenase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D YSQ_07195 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:ccf00720]
D YSQ_01530 Pyruvate-flavodoxin oxidoreductase K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D YSQ_03835 acetyl-CoA carboxylase subunit alpha K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D YSQ_04560 biotin attachment protein K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D YSQ_07195 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSQ_02030 fumC; fumarate hydratase K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D YSQ_07840 fumarate reductase K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07835 frdB; fumarate reductase K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D YSQ_07845 fumarate reductase K25996 frdC; succinate dehydrogenase subunit C
D YSQ_07185 succinyl-CoA synthetase subsunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D YSQ_07190 sucC; malate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D YSQ_07175 2-oxoglutarate ferredoxin oxidoreductase subunit alpha K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D YSQ_07170 2-oxoglutarate ferredoxin oxidoreductase subunit beta K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D YSQ_07165 oorC; 2-oxoglutarate:acceptor oxidoreductase K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D YSQ_07180 oorD; 2-oxoglutarate:acceptor oxidoreductase K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D YSQ_07200 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D YSQ_05230 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D YSQ_07660 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YSQ_02405 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YSQ_02410 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YSQ_09265 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YSQ_05135 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YSQ_02975 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YSQ_05905 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSQ_05900 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YSQ_01215 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
C 00680 Methane metabolism [PATH:ccf00680]
D YSQ_01325 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YSQ_01330 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D YSQ_01335 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D YSQ_01340 formate dehydrogenase K00127 fdoI; formate dehydrogenase subunit gamma
D YSQ_07875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YSQ_09570 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSQ_07195 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSQ_02585 fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D YSQ_05210 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSQ_05900 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D YSQ_05905 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSQ_01215 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSQ_07690 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YSQ_04765 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YSQ_08245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YSQ_08500 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ccf00910]
D YSQ_05505 nitrate reductase catalytic subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D YSQ_05490 nitrate reductase K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D YSQ_02065 cytochrome C K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D YSQ_02060 cytochrome C K15876 nrfH; cytochrome c nitrite reductase small subunit
D YSQ_06355 2-nitropropane dioxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D YSQ_03700 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D YSQ_05855 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSQ_00060 glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YSQ_00065 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YSQ_08750 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ccf00920]
D YSQ_00820 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D YSQ_09605 CysQ protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YSQ_05590 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YSQ_04665 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YSQ_09850 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ccf00061]
D YSQ_07660 acetyl-CoA carboxylase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D YSQ_02405 acetyl-CoA carboxylase K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D YSQ_02410 biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D YSQ_09265 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D YSQ_07670 acyl carrier protein K02078 acpP; acyl carrier protein
D YSQ_02350 acyl carrier protein K02078 acpP; acyl carrier protein
D YSQ_09325 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YSQ_02305 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSQ_02355 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSQ_08240 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSQ_07665 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YSQ_07685 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YSQ_08605 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YSQ_01870 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D YSQ_05430 2-acyl-glycerophospho-ethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:ccf00074]
D YSQ_01825 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D YSQ_07670 acyl carrier protein K02078 acpP; acyl carrier protein
D YSQ_02350 acyl carrier protein K02078 acpP; acyl carrier protein
D YSQ_09325 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:ccf00121]
D YSQ_05365 7-alpha-hydroxysteroid dehydrogenase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ccf00561]
D YSQ_01150 NADP-dependent alcohol dehydrogenase K13979 yahK; alcohol dehydrogenase (NADP+) [EC:1.1.1.2]
D YSQ_08235 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YSQ_08095 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YSQ_07260 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YSQ_08670 DeoR family transcriptional regulator K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:ccf00564]
D YSQ_03005 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D YSQ_08095 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YSQ_07260 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D YSQ_08670 DeoR family transcriptional regulator K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D YSQ_02100 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D YSQ_05430 2-acyl-glycerophospho-ethanolamine acyltransferase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D YSQ_02120 phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D YSQ_03395 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YSQ_05175 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YSQ_03390 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D YSQ_03650 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
C 00565 Ether lipid metabolism [PATH:ccf00565]
D YSQ_02100 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D YSQ_02100 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D YSQ_02100 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:ccf00592]
D YSQ_02100 phospholipase K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
D YSQ_04650 hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ccf00230]
D YSQ_01835 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSQ_04635 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D YSQ_08875 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YSQ_01780 glutamine amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YSQ_02650 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D YSQ_09130 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YSQ_05015 phosphoribosylformylglycinamidine synthase K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D YSQ_07275 phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D YSQ_07270 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YSQ_01260 phosphoribosylaminoimidazole synthetase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D YSQ_05840 N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D YSQ_07280 phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D YSQ_00120 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YSQ_05005 phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YSQ_04590 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YSQ_08425 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YSQ_02880 laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YSQ_03690 inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YSQ_08220 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YSQ_01985 nucleoside-triphosphate diphosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D YSQ_02005 nicotinate phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D YSQ_02670 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YSQ_03100 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D YSQ_00125 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YSQ_08780 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YSQ_06365 potassium-transporting ATPase subunit C K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YSQ_02725 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YSQ_08115 guanosine polyphosphate pyrophosphohydrolase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D YSQ_01410 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YSQ_06110 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YSQ_07345 HIT family hydrolase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D YSQ_00820 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D YSQ_05775 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 00240 Pyrimidine metabolism [PATH:ccf00240]
D YSQ_08525 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YSQ_01430 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YSQ_03470 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YSQ_03010 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YSQ_08660 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D YSQ_05380 diguanylate cyclase K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D YSQ_08770 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D YSQ_07980 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D YSQ_06375 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D YSQ_08220 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YSQ_07305 septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D YSQ_00140 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D YSQ_08425 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YSQ_02430 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D YSQ_02400 deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D YSQ_00125 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YSQ_08780 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D YSQ_05575 thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D YSQ_06535 thymidine kinase K00857 tdk; thymidine kinase [EC:2.7.1.21]
D YSQ_00135 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D YSQ_05240 oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ccf00250]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSQ_00430 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D YSQ_00150 ansB; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YSQ_00440 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D YSQ_06005 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YSQ_04570 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YSQ_01410 adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D YSQ_00120 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D YSQ_03470 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D YSQ_00060 glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YSQ_00065 glutamate synthase subunit beta K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D YSQ_01385 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YSQ_05855 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSQ_08525 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YSQ_01430 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YSQ_07270 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YSQ_02025 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YSQ_08875 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YSQ_01780 glutamine amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ccf00260]
D YSQ_02515 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YSQ_03905 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YSQ_08915 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YSQ_09230 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D YSQ_05340 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D YSQ_07875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YSQ_07690 phosphoglyceromutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D YSQ_04765 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YSQ_08245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YSQ_08500 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D YSQ_05240 oxidoreductase K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D YSQ_03395 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D YSQ_00705 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YSQ_05265 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YSQ_08135 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YSQ_08140 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:ccf00270]
D YSQ_05590 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D YSQ_04665 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D YSQ_01900 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YSQ_02980 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YSQ_03480 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YSQ_09320 S-adenosylhomocysteine nucleosidase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D YSQ_02880 laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D YSQ_02995 S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YSQ_02515 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YSQ_03905 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YSQ_08915 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YSQ_09230 homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D YSQ_09850 homoserine O-succinyltransferase K00651 metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]
D YSQ_09865 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D YSQ_08625 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSQ_03140 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D YSQ_07195 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D YSQ_00705 serine dehydratase K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D YSQ_04765 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YSQ_08245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ccf00280]
D YSQ_08625 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ccf00290]
D YSQ_05265 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D YSQ_09805 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D YSQ_09800 leuD; isopropylmalate isomerase K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D YSQ_09810 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D YSQ_02475 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YSQ_02480 acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YSQ_06145 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YSQ_00085 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YSQ_08625 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YSQ_07135 integral memnbrane protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D YSQ_09815 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ccf00300]
D YSQ_08915 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D YSQ_02515 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YSQ_03905 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YSQ_05370 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YSQ_08870 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D YSQ_00840 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D YSQ_08800 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YSQ_03760 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YSQ_01250 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YSQ_08320 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D YSQ_00595 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YSQ_05425 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation
C 00220 Arginine biosynthesis [PATH:ccf00220]
D YSQ_04070 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D YSQ_06005 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YSQ_04570 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YSQ_07270 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YSQ_05855 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSQ_08525 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D YSQ_01430 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSQ_08810 N-acetyltransferase GCN5 K22477 argO; N-acetylglutamate synthase [EC:2.3.1.1]
D YSQ_08805 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D YSQ_08815 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D YSQ_08800 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:ccf00330]
D YSQ_05585 arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D YSQ_04990 agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D YSQ_04980 apolipoprotein acyltransferase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D YSQ_09040 saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D YSQ_01310 carboxynorspermidine decarboxylase K27684 capadc; carboxyaminopropylagmatine decarboxylase [EC:4.1.1.127]
D YSQ_03605 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D YSQ_01385 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YSQ_09440 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YSQ_07080 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
C 00340 Histidine metabolism [PATH:ccf00340]
D YSQ_00880 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D YSQ_00850 phosphoribosyl-AMP cyclohydrolase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D YSQ_00860 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D YSQ_02270 hisH; imidazole glycerol phosphate synthase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YSQ_00865 imidazole glycerol phosphate synthase K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D YSQ_02275 imidazole glycerol phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YSQ_00855 imidazole glycerol phosphate synthase K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D YSQ_00870 imidazoleglycerol-phosphate dehydratase K01089 hisB; imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase [EC:4.2.1.19 3.1.3.15]
D YSQ_08305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YSQ_00875 hisD; bifunctional histidinal dehydrogenase/histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:ccf00350]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSQ_08305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00360 Phenylalanine metabolism [PATH:ccf00360]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSQ_08305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YSQ_01790 4-hydroxy-2-ketovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00380 Tryptophan metabolism [PATH:ccf00380]
D YSQ_03700 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D YSQ_01105 catalase K03781 katE; catalase [EC:1.11.1.6]
D YSQ_01925 catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ccf00400]
D YSQ_05770 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YSQ_04000 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D YSQ_00345 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D YSQ_07860 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D YSQ_07950 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D YSQ_04745 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D YSQ_00630 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D YSQ_08155 anthranilate synthase subunit I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YSQ_08150 anthranilate synthase K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D YSQ_08145 N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D YSQ_07350 indole-3-glycerol-phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D YSQ_08135 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D YSQ_08140 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D YSQ_08310 chloride transporter K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D YSQ_09250 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSQ_08305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:ccf00410]
D YSQ_08410 aspartate decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D YSQ_08405 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:ccf00430]
D YSQ_05905 phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D YSQ_05900 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:ccf00450]
D YSQ_01900 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D YSQ_02980 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D YSQ_07075 pyridine nucleotide-disulfide oxidoreductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YSQ_08900 thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D YSQ_00820 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D YSQ_01380 segregation protein A K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YSQ_01955 selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YSQ_05215 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ccf00460]
D YSQ_03700 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D YSQ_00150 ansB; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D YSQ_07875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:ccf00470]
D YSQ_04695 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YSQ_05410 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YSQ_07270 phosphoribosylformylglycinamidine synthase K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D YSQ_00540 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YSQ_07700 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YSQ_00430 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
D YSQ_01250 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D YSQ_08320 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:ccf00480]
D YSQ_01195 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D YSQ_04580 aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YSQ_04120 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YSQ_07200 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:ccf00540]
D YSQ_08600 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YSQ_09240 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YSQ_02485 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YSQ_08480 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YSQ_08470 ipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YSQ_05345 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YSQ_01690 arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YSQ_07965 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YSQ_06070 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YSQ_05335 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YSQ_01775 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YSQ_05815 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YSQ_03300 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D YSQ_08675 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YSQ_03215 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YSQ_01740 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YSQ_03210 cytochrome C biogenesis protein CcdA K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YSQ_03200 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YSQ_03205 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D YSQ_01735 dehydrogenase K07031 hddA; D-glycero-alpha-D-manno-heptose-7-phosphate kinase [EC:2.7.1.168]
D YSQ_01745 D-glycero-D-manno-heptose 1-phosphate guanosyltransferase K15669 hddC; D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase [EC:2.7.7.71]
D YSQ_03305 glycosyl transferase family 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YSQ_03225 ADP-heptose--LPS heptosyltransferase K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ccf00541]
D YSQ_01220 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D YSQ_03315 UDP-galactose-4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D YSQ_03235 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YSQ_03240 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YSQ_01720 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D YSQ_01730 GDP-mannose 4,6-dehydratase K15856 rmd; GDP-4-dehydro-6-deoxy-D-mannose reductase [EC:1.1.1.281]
D YSQ_01725 GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271]
D YSQ_02245 aminotransferase DegT K13010 per; perosamine synthetase [EC:2.6.1.102]
D YSQ_05300 glmU; N-acetylglucosamine-1-phosphate uridyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D YSQ_02395 N-acetyl glucosamine/N-acetyl galactosamine epimerase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D YSQ_02390 C4 aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D YSQ_02280 N-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D YSQ_02285 nucleotidase K15897 pseG; UDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranose hydrolase [EC:3.6.1.57]
D YSQ_02260 N-acetylneuraminate synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D YSQ_02290 CMP-N-acetylneuraminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D YSQ_03365 UDP-GlcNAc C4,6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D YSQ_07315 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D YSQ_03250 WxcM-like protein K13018 wbpD; UDP-2-acetamido-3-amino-2,3-dideoxy-glucuronate N-acetyltransferase [EC:2.3.1.201]
C 00550 Peptidoglycan biosynthesis [PATH:ccf00550]
D YSQ_04795 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YSQ_09590 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YSQ_03730 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YSQ_07700 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YSQ_00595 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YSQ_05410 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YSQ_05425 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YSQ_08835 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YSQ_00210 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSQ_07695 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSQ_03825 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YSQ_07300 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YSQ_08845 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YSQ_06045 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YSQ_07230 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:ccf00552]
D YSQ_08835 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ccf00543]
D YSQ_06245 alginate O-acetyltransferase K19294 algI; alginate O-acetyltransferase complex protein AlgI
D YSQ_05590 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ccf00730]
D YSQ_07600 phosphomethylpyrimidine synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D YSQ_03575 phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D YSQ_03790 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D YSQ_08735 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YSQ_03800 thiamine biosynthesis protein ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D YSQ_08285 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YSQ_03795 thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D YSQ_03580 thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YSQ_03805 thiamine-phosphate pyrophosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D YSQ_06110 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YSQ_07675 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:ccf00740]
D YSQ_04060 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YSQ_02465 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D YSQ_00715 riboflavin deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YSQ_07970 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D YSQ_02875 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D YSQ_05565 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:ccf00750]
D YSQ_08245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YSQ_02715 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D YSQ_02720 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D YSQ_05340 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ccf00760]
D YSQ_08785 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D YSQ_08425 stationary phase survival protein SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D YSQ_01850 nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D YSQ_05350 NAD synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D YSQ_03670 competence damage-inducible protein A K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D YSQ_03750 hypothetical protein K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D YSQ_06100 pnk; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
C 00770 Pantothenate and CoA biosynthesis [PATH:ccf00770]
D YSQ_02475 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D YSQ_02480 acetolactate synthase K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D YSQ_06145 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D YSQ_00085 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D YSQ_08400 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D YSQ_08405 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D YSQ_07915 pantothenate kinase K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D YSQ_05295 phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D YSQ_05570 phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D YSQ_01255 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D YSQ_01825 4'-phosphopantetheinyl transferase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D YSQ_08625 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YSQ_08410 aspartate decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:ccf00780]
D YSQ_08370 biotin biosynthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D YSQ_07665 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YSQ_07685 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YSQ_08605 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YSQ_01870 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D YSQ_08365 hypothetical protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D YSQ_08360 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YSQ_08355 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YSQ_08350 ATP-dependent dethiobiotin synthetase BioD K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D YSQ_09620 biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D YSQ_09410 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:ccf00790]
D YSQ_09165 GTP cyclohydrolase K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D YSQ_05825 hypothetical protein K22391 E3.5.4.16; GTP cyclohydrolase I [EC:3.5.4.16]
D YSQ_08100 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D YSQ_00340 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D YSQ_02530 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D YSQ_04060 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YSQ_02465 3,4-dihydroxy-2-butanone 4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D YSQ_04805 para-aminobenzoate synthase K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85]
D YSQ_04810 para-aminobenzoate synthase K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D YSQ_08965 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YSQ_08970 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YSQ_00095 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YSQ_09840 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YSQ_08975 molybdenum cofactor biosynthesis protein MoeA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YSQ_08695 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YSQ_01295 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YSQ_05725 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YSQ_04790 molybdopterin biosynthesis protein MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YSQ_01290 molybdenum cofactor biosynthesis protein MoaA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D YSQ_02105 molybdopterin-guanine dinucleotide biosynthesis protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:ccf00670]
D YSQ_05135 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D YSQ_07875 serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D YSQ_09130 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D YSQ_05005 phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YSQ_09415 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YSQ_02320 formyl transferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YSQ_00135 FAD-dependent thymidylate synthase K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D YSQ_05440 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D YSQ_02975 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D YSQ_02925 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ccf00860]
D YSQ_05185 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_02420 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_07145 glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D YSQ_05145 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YSQ_04065 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YSQ_07130 porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D YSQ_03585 uroporphyrinogen-III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D YSQ_02700 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D YSQ_04080 coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D YSQ_08075 membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D YSQ_07330 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D YSQ_00800 hypothetical protein K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ccf00130]
D YSQ_08990 ubiA; prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D YSQ_07125 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D YSQ_05565 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YSQ_08270 ubiquinone/menaquinone biosynthesis methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D YSQ_02435 hypothetical protein K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D YSQ_02015 hypothetical protein K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D YSQ_00350 chlorohydrolase K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D YSQ_09320 S-adenosylhomocysteine nucleosidase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D YSQ_07555 hypothetical protein K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D YSQ_09580 succinyl-CoA ligase K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ccf00900]
D YSQ_08285 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D YSQ_02125 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D YSQ_00830 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D YSQ_03440 4-diphosphocytidyl-2C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D YSQ_05915 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D YSQ_04750 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D YSQ_05565 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D YSQ_00580 geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D YSQ_07150 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D YSQ_00575 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ccf00523]
D YSQ_03235 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YSQ_03240 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YSQ_01720 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
C 01054 Nonribosomal peptide structures [PATH:ccf01054]
D YSQ_00430 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D YSQ_03240 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:ccf00332]
D YSQ_09440 gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D YSQ_07080 proA; gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ccf00261]
D YSQ_00820 sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D YSQ_02515 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D YSQ_03905 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D YSQ_05370 dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D YSQ_08870 dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ccf00521]
D YSQ_01835 phospho-sugar mutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D YSQ_09260 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D YSQ_03235 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YSQ_03240 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D YSQ_01720 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:ccf00525]
D YSQ_03235 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D YSQ_03240 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ccf00401]
D YSQ_09250 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSQ_08305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D YSQ_08155 anthranilate synthase subunit I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D YSQ_09325 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YSQ_07685 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YSQ_01870 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D YSQ_07670 acyl carrier protein K02078 acpP; acyl carrier protein
D YSQ_02350 acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:ccf00999]
D YSQ_03480 S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D YSQ_07860 shikimate 5-dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ccf00362]
D YSQ_01790 4-hydroxy-2-ketovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
D YSQ_02620 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YSQ_08620 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation [PATH:ccf00627]
D YSQ_03700 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D YSQ_05565 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation [PATH:ccf00622]
D YSQ_02620 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YSQ_08620 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YSQ_01790 4-hydroxy-2-ketovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
D YSQ_03700 carbon-nitrogen hydrolase K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation [PATH:ccf00621]
D YSQ_02620 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YSQ_08620 tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D YSQ_01790 4-hydroxy-2-ketovalerate aldolase K01666 mhpE; 4-hydroxy 2-oxovalerate aldolase [EC:4.1.3.39]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ccf03020]
D YSQ_07450 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YSQ_07445 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YSQ_00890 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YSQ_06370 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ccf03010]
D YSQ_04755 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YSQ_03075 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YSQ_09700 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YSQ_00895 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YSQ_09645 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YSQ_03635 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YSQ_07385 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YSQ_09660 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YSQ_01515 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YSQ_09735 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YSQ_00900 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YSQ_07390 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YSQ_00905 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YSQ_09665 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YSQ_04860 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YSQ_05800 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YSQ_09685 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YSQ_03625 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YSQ_09710 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YSQ_00810 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YSQ_08035 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YSQ_07465 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YSQ_09715 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YSQ_09730 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YSQ_09725 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D YSQ_09670 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YSQ_09655 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YSQ_07455 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YSQ_06010 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YSQ_07460 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YSQ_07470 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YSQ_01510 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YSQ_09680 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YSQ_09640 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YSQ_09695 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YSQ_00885 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YSQ_09650 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YSQ_05780 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YSQ_08720 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YSQ_00465 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YSQ_09705 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YSQ_09720 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D YSQ_09675 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YSQ_08335 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YSQ_00470 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YSQ_07615 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YSQ_09690 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YSQ_08945 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YSQ_08230 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YSQ_07490 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YSQ_05045 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YSQ_08725 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YSQ_00910 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YSQ_07725 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_05675 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_00155 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSQ_07710 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSQ_05660 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSQ_00175 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSQ_07705 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSQ_05655 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ccf00970]
D YSQ_00160 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSQ_05670 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSQ_07720 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSQ_09785 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSQ_03980 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSQ_07375 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSQ_09535 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSQ_09540 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSQ_02795 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YSQ_04900 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YSQ_04920 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YSQ_00735 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YSQ_02460 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YSQ_04910 tRNA-Arg K14224 tRNA-Glu; tRNA Glu
D YSQ_09005 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YSQ_00745 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSQ_04785 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSQ_07505 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSQ_09545 tRNA-His K14226 tRNA-His; tRNA His
D YSQ_00165 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSQ_05665 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSQ_07715 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSQ_09530 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSQ_00740 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSQ_04540 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSQ_04875 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSQ_04915 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YSQ_04930 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YSQ_02455 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSQ_06415 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSQ_09770 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSQ_02450 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YSQ_09550 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YSQ_02070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSQ_00730 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSQ_09775 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSQ_07500 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YSQ_07515 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YSQ_07485 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YSQ_07510 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YSQ_04905 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSQ_04925 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSQ_09790 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSQ_01405 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YSQ_05185 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_02420 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_03685 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D YSQ_03000 glutamyl amidotransferase K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D YSQ_07895 glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D YSQ_07310 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YSQ_06105 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YSQ_05830 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YSQ_02750 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YSQ_08830 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YSQ_07940 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YSQ_01955 selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D YSQ_05390 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YSQ_05215 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YSQ_09415 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YSQ_02320 formyl transferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D YSQ_05530 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YSQ_03530 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YSQ_03675 isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YSQ_07880 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YSQ_03110 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YSQ_07140 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YSQ_05580 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YSQ_04735 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YSQ_04740 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YSQ_06360 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YSQ_07945 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ccf03060]
D YSQ_09635 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YSQ_07480 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D YSQ_08760 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D YSQ_03520 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D YSQ_03525 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D YSQ_03515 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YSQ_05030 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSQ_04955 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YSQ_05805 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YSQ_02935 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YSQ_03105 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D YSQ_02500 preprotein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D YSQ_02495 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D YSQ_05130 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YSQ_08080 peptidase A8 K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ccf04122]
D YSQ_08735 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YSQ_00280 thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YSQ_00665 ATP-binding protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YSQ_01295 molybdenum cofactor biosynthesis protein MoaE K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D YSQ_08975 molybdenum cofactor biosynthesis protein MoeA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D YSQ_01300 molybdenum cofactor biosynthesis protein MoaD K03636 moaD; sulfur-carrier protein
D YSQ_08695 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D YSQ_05725 molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D YSQ_03785 thiamine biosynthesis protein K03154 thiS; sulfur carrier protein
D YSQ_03790 thiamine biosynthesis protein ThiF K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:ccf03018]
D YSQ_02510 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YSQ_09570 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSQ_02635 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YSQ_06150 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YSQ_03180 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YSQ_02920 ribonuclease K18682 rny; ribonucrease Y [EC:3.1.-.-]
D YSQ_09745 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D YSQ_05615 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSQ_02860 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSQ_02055 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YSQ_06280 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ccf03030]
D YSQ_07605 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSQ_05760 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSQ_03175 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSQ_02525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSQ_06155 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSQ_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSQ_07060 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YSQ_00610 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YSQ_06470 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YSQ_09985 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_03630 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_06605 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_00620 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YSQ_00070 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YSQ_02535 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ccf03410]
D YSQ_02575 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YSQ_00435 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YSQ_00765 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YSQ_05055 family 4 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D YSQ_08680 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YSQ_00145 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YSQ_02535 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ccf03420]
D YSQ_03560 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YSQ_08165 UvrABC system subunit A K03701 uvrA; excinuclease ABC subunit A
D YSQ_05975 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D YSQ_02685 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YSQ_05520 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSQ_03455 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSQ_02535 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:ccf03430]
D YSQ_03740 DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2
D YSQ_05520 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSQ_03455 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSQ_08250 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YSQ_03695 coiled-coil protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YSQ_00145 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YSQ_09985 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_03630 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_06605 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_05760 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSQ_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSQ_03175 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSQ_06155 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSQ_02525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSQ_07605 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSQ_02535 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:ccf03440]
D YSQ_00145 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YSQ_09985 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_03630 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_06605 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_06320 recombinase RecR K06187 recR; recombination protein RecR
D YSQ_09575 recombinase RecA K03553 recA; recombination protein RecA
D YSQ_05405 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YSQ_02040 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YSQ_07545 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YSQ_05760 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSQ_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSQ_03175 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSQ_06155 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSQ_02525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSQ_07605 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSQ_05955 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ccf02010]
D YSQ_01200 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D YSQ_01205 ABC transporter permease K05773 tupB; tungstate transport system permease protein
D YSQ_01210 hypothetical protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D YSQ_08375 molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YSQ_08385 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein
D YSQ_08390 GTPase K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YSQ_09055 iron deficiency-induced protein A K02012 afuA; iron(III) transport system substrate-binding protein
D YSQ_09050 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D YSQ_09045 iron ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YSQ_01995 toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YSQ_00560 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YSQ_00570 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YSQ_00565 sulfate ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YSQ_06230 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YSQ_06225 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein
D YSQ_06220 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein
D YSQ_06215 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YSQ_04620 amino acid ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein
D YSQ_04625 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D YSQ_04630 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D YSQ_04615 ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YSQ_05680 ABC transporter substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D YSQ_04715 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein
D YSQ_04710 peptide ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D YSQ_03925 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSQ_03930 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSQ_03935 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D YSQ_03940 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D YSQ_03945 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YSQ_03950 livF; amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YSQ_05545 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSQ_05550 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSQ_05555 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSQ_02985 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSQ_05540 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D YSQ_05535 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D YSQ_09180 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D YSQ_05120 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D YSQ_09190 membrane protein K09816 znuB; zinc transport system permease protein
D YSQ_09185 cation ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YSQ_01680 capsule polysaccharide transporter K10107 kpsE; capsular polysaccharide transport system permease protein
D YSQ_01670 capsule polysaccharide transporter K09688 kpsM; capsular polysaccharide transport system permease protein
D YSQ_01675 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D YSQ_05275 membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D YSQ_08325 membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D YSQ_05990 lipopolysaccharide ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YSQ_06385 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YSQ_06390 ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YSQ_05385 ABC transporter permease K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YSQ_06265 macrolide ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YSQ_00960 multidrug ABC transporter ATP-binding protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:ccf03070]
D YSQ_03865 multidrug transporter K12340 tolC; outer membrane protein
D YSQ_01540 type II protein secretion system D protein K02453 gspD; general secretion pathway protein D
D YSQ_01560 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D YSQ_02140 N-terminal cleavage protein K02456 gspG; general secretion pathway protein G
D YSQ_05960 prepilin K02456 gspG; general secretion pathway protein G
D YSQ_01555 type II protein secretion system E protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YSQ_03520 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D YSQ_03525 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D YSQ_07480 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D YSQ_08760 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D YSQ_09635 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YSQ_03515 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YSQ_05030 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSQ_04955 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YSQ_02935 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YSQ_05805 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YSQ_03105 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D YSQ_02500 preprotein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D YSQ_02495 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
D YSQ_10050 hypothetical protein K03203 virB8; type IV secretion system protein VirB8
D YSQ_10040 hypothetical protein K03195 virB10; type IV secretion system protein VirB10
D YSQ_10030 conjugal transfer protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D YSQ_10020 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ccf02020]
D YSQ_06230 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YSQ_02780 serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D YSQ_02160 flagellin K02406 fliC; flagellin
D YSQ_02165 flagellin K02406 fliC; flagellin
D YSQ_05750 flagellin K02406 fliC; flagellin
D YSQ_00320 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D YSQ_08195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSQ_08265 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D YSQ_08260 tricarboxylate transporter K07794 tctB; putative tricarboxylic transport membrane protein
D YSQ_08255 tricarboxylic transport membrane protein K07795 tctC; putative tricarboxylic transport membrane protein
D YSQ_00005 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D YSQ_05980 C4-dicarboxylate ABC transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YSQ_03445 carbon storage regulator K03563 csrA; carbon storage regulator
D YSQ_02020 nucleotidyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D YSQ_05855 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSQ_05985 RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YSQ_06330 quinone-reactive Ni/Fe-hydrogenase B-type cytochrome subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D YSQ_04610 SAM-dependent methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YSQ_07730 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_05000 membrane protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_08645 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_08495 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D YSQ_08490 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YSQ_03375 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YSQ_04605 chemotaxis protein B K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YSQ_08485 chemotaxis protein CheY K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D YSQ_03055 ubiquinol cytochrome C oxidoreductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D YSQ_03060 ubiquinol cytochrome C oxidoreductase K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D YSQ_03065 cytochrome C K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D YSQ_02815 cytochrome C553 K08738 CYC; cytochrome c
D YSQ_03195 cytochrome C K08738 CYC; cytochrome c
D YSQ_01450 cytochrome oxidase subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D YSQ_01455 peptidase S13 K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D YSQ_01460 cytochrome B561 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D YSQ_01465 cytochrome CBB3 K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D YSQ_00405 cytochrome C oxidase subunit II K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D YSQ_00410 cytochrome C oxidase assembly protein K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D YSQ_03865 multidrug transporter K12340 tolC; outer membrane protein
D YSQ_02605 phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D YSQ_03055 ubiquinol cytochrome C oxidoreductase K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ccf02024]
D YSQ_02995 S-ribosylhomocysteinase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D YSQ_08155 anthranilate synthase subunit I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D YSQ_05770 phospho-2-dehydro-3-deoxyheptonate aldolase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D YSQ_05715 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YSQ_05695 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YSQ_05700 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YSQ_05690 spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YSQ_03925 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSQ_03930 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSQ_03935 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D YSQ_03940 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D YSQ_03945 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YSQ_03950 livF; amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YSQ_05125 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YSQ_04060 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D YSQ_00715 riboflavin deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D YSQ_08060 outer membrane channel protein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D YSQ_05030 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSQ_07480 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D YSQ_08760 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D YSQ_09635 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YSQ_03515 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YSQ_04955 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YSQ_02935 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YSQ_05805 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:ccf02030]
D YSQ_07730 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_05000 membrane protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_08645 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_08490 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YSQ_08495 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D YSQ_03375 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YSQ_04605 chemotaxis protein B K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YSQ_08485 chemotaxis protein CheY K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D YSQ_04610 SAM-dependent methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YSQ_08295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YSQ_00315 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YSQ_00310 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D YSQ_08125 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YSQ_08195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSQ_02595 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D YSQ_08200 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:ccf02040]
D YSQ_07225 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YSQ_08300 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YSQ_08295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YSQ_08290 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YSQ_00250 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YSQ_01830 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D YSQ_00315 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YSQ_00310 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D YSQ_08125 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YSQ_05305 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YSQ_09585 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YSQ_03090 flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YSQ_04850 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YSQ_08205 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YSQ_07215 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YSQ_07220 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YSQ_00255 flgD; flagellar basal body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YSQ_09870 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D YSQ_00260 flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YSQ_05865 flagellar basal body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF
D YSQ_05860 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YSQ_05910 flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D YSQ_01595 flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D YSQ_01590 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D YSQ_01575 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YSQ_04870 lagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D YSQ_03890 hypothetical protein K09860 flgP; outer membrane protein FlgP
D YSQ_03895 hypothetical protein K24346 flgQ; flagellar motility protein FlgQ
D YSQ_02160 flagellin K02406 fliC; flagellin
D YSQ_02165 flagellin K02406 fliC; flagellin
D YSQ_05750 flagellin K02406 fliC; flagellin
D YSQ_07115 flagellar cap protein FliD K02407 fliD; flagellar hook-associated protein 2
D YSQ_07110 flagellar biosynthesis protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YSQ_08195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSQ_02595 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D YSQ_08200 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D YSQ_04035 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YSQ_05985 RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YSQ_00320 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D YSQ_09570 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ccf01501]
D YSQ_08050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSQ_08055 transporter K18138 acrB; multidrug efflux pump
D YSQ_08060 outer membrane channel protein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D YSQ_03865 multidrug transporter K12340 tolC; outer membrane protein
D YSQ_07300 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YSQ_06045 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YSQ_07230 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YSQ_08395 beta-lactamase K19210 blaOXA-61; beta-lactamase class D OXA-61 [EC:3.5.2.6]
C 01502 Vancomycin resistance [PATH:ccf01502]
D YSQ_05410 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YSQ_04695 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YSQ_05425 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D YSQ_00210 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSQ_07695 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSQ_03825 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ccf01503]
D YSQ_08675 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YSQ_06350 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YSQ_02780 serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D YSQ_08050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSQ_08055 transporter K18138 acrB; multidrug efflux pump
D YSQ_03865 multidrug transporter K12340 tolC; outer membrane protein
D YSQ_08600 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ccf01000]
C 01001 Protein kinases [BR:ccf01001]
D YSQ_02790 ATPase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSQ_02845 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSQ_06315 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSQ_04885 signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D YSQ_08490 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:ccf01009]
D YSQ_07250 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YSQ_08500 phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ccf01002]
D YSQ_08080 peptidase A8 K03101 lspA; signal peptidase II [EC:3.4.23.36]
D YSQ_05280 multidrug transporter K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D YSQ_06325 hydrogenase K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D YSQ_02670 GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D YSQ_05945 glutamine amidotransferase K23150 E3.5.1.129; N5-(cytidine 5'-diphosphoramidyl)-L-glutamine hydrolase [EC:3.5.1.129]
D YSQ_00535 hypothetical protein K13695 nlpC; probable lipoprotein NlpC
D YSQ_08875 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YSQ_01780 glutamine amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D YSQ_00060 glutamate synthase K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D YSQ_02025 glucosamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D YSQ_04725 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D YSQ_08880 CAAX amino terminal protease K07052 K07052; CAAX protease family protein
D YSQ_03465 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D YSQ_04580 aminopeptidase A K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D YSQ_03760 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D YSQ_04120 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D YSQ_00545 methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D YSQ_06040 peptidase M24 K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D YSQ_03385 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YSQ_04015 ATPase AAA K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YSQ_03645 zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D YSQ_02780 serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D YSQ_09155 ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D YSQ_03620 Lon protease K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D YSQ_05130 signal peptidase K03100 lepB; signal peptidase I [EC:3.4.21.89]
D YSQ_07285 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D YSQ_00355 endopeptidase IV K04773 sppA; protease IV [EC:3.4.21.-]
D YSQ_06015 peptidase K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D YSQ_05845 protease K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D YSQ_08850 alpha-2-macroglobulin K06894 yfhM; alpha-2-macroglobulin
C 01003 Glycosyltransferases [BR:ccf01003]
D YSQ_08845 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YSQ_07300 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YSQ_03345 glycosyl transferase family 1 K15914 pglA; N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase [EC:2.4.1.290]
D YSQ_03325 general glycosylation pathway protein K17249 pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]
D YSQ_03330 general glycosylation pathway protein K17250 pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase [EC:2.4.1.293]
D YSQ_03335 glycosyl transferase family 1 K17248 pglJ; N-acetylgalactosamine-N,N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase [EC:2.4.1.291]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ccf01005]
D YSQ_08600 UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D YSQ_08470 ipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D YSQ_09240 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D YSQ_02485 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D YSQ_08480 hypothetical protein K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D YSQ_05345 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D YSQ_03300 lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D YSQ_05815 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D YSQ_08675 sulfatase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D YSQ_07965 2-dehydro-3-deoxyphosphooctonate aldolase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D YSQ_05335 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YSQ_01775 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D YSQ_06070 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D YSQ_01690 arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D YSQ_03305 glycosyl transferase family 1 K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D YSQ_03225 ADP-heptose--LPS heptosyltransferase K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D YSQ_03215 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YSQ_01740 phosphoheptose isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D YSQ_03200 D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D YSQ_03210 cytochrome C biogenesis protein CcdA K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D YSQ_03205 ADP-L-glycero-D-manno-heptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ccf01011]
D YSQ_04795 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D YSQ_09590 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D YSQ_03730 UDP-N-acetylmuramate--alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D YSQ_07700 murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D YSQ_00595 UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D YSQ_05410 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D YSQ_04695 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D YSQ_00540 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D YSQ_00210 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSQ_07695 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D YSQ_03825 UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D YSQ_08835 UDP pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D YSQ_05395 membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D YSQ_07300 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D YSQ_08845 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D YSQ_06045 penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D YSQ_07230 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YSQ_05195 lytic transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YSQ_06080 lytic transglycosylase K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D YSQ_07210 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D YSQ_06075 RlpA-like lipoprotein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D YSQ_06350 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:ccf01004]
D YSQ_09325 malonyl CoA-ACP transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D YSQ_02305 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSQ_02355 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSQ_08240 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D YSQ_07665 3-oxoacyl-ACP synthase K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D YSQ_07685 3-ketoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D YSQ_08605 3-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D YSQ_01870 enoyl-ACP reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D YSQ_04650 hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D YSQ_01215 acetyl-CoA synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1]
D YSQ_08575 acyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17]
D YSQ_08235 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D YSQ_08095 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D YSQ_07260 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ccf01008]
D YSQ_00430 aspartate racemase K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:ccf01006]
D YSQ_00580 geranyltranstransferase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D YSQ_07150 octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D YSQ_08995 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YSQ_08990 ubiA; prenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:ccf01007]
D YSQ_05185 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_02420 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_06360 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YSQ_07945 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YSQ_05390 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YSQ_03110 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YSQ_05215 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YSQ_03675 isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YSQ_05530 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YSQ_03530 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YSQ_07880 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YSQ_06105 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YSQ_05580 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YSQ_05830 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YSQ_02750 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YSQ_07940 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YSQ_07140 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YSQ_08830 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YSQ_07310 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YSQ_04735 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YSQ_04740 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YSQ_05595 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D YSQ_08920 aspartate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D YSQ_08305 histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D YSQ_08360 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D YSQ_08800 acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D YSQ_08355 adenosylmethionine-8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D YSQ_05145 glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D YSQ_08625 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D YSQ_04810 para-aminobenzoate synthase K03342 pabBC; para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
D YSQ_08245 MFS transporter K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D YSQ_07315 aminotransferase DegT K13017 wbpE; UDP-2-acetamido-2-deoxy-ribo-hexuluronate aminotransferase [EC:2.6.1.98]
D YSQ_02245 aminotransferase DegT K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ccf00194]
D YSQ_09365 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D YSQ_09370 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D YSQ_09375 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D YSQ_09380 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D YSQ_09385 F0F1 ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D YSQ_09390 F0F1 ATP synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YSQ_09395 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D YSQ_04545 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D YSQ_02965 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ccf03000]
D YSQ_04040 LysR family transcriptional regulator K21900 cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon
D YSQ_08045 TetR family transcriptional regulator K18992 cmeR; TetR/AcrR family transcriptional regulator, cmeABC operon repressor
D YSQ_02770 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D YSQ_01080 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D YSQ_07885 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D YSQ_05125 Fur family transcriptional regulator K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D YSQ_08280 peroxide stress regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D YSQ_00420 tCrp/Fnr family transcriptional regulator K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D YSQ_01095 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D YSQ_09410 biotin--protein ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D YSQ_01385 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D YSQ_02830 CopG family transcriptional regulator K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D YSQ_07290 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D YSQ_09400 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YSQ_05625 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D YSQ_07675 transcriptional regulator K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D YSQ_09275 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:ccf03021]
D YSQ_00890 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YSQ_07450 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YSQ_07445 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YSQ_06370 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YSQ_04035 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor
D YSQ_05985 RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D YSQ_00320 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D YSQ_07565 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D YSQ_07975 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D YSQ_07475 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D YSQ_09275 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D YSQ_08475 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D YSQ_03180 transcription termination factor Rho K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:ccf03019]
D YSQ_00625 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YSQ_09745 ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D YSQ_02920 ribonuclease K18682 rny; ribonucrease Y [EC:3.1.-.-]
D YSQ_06150 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YSQ_09570 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSQ_02635 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D YSQ_03180 transcription termination factor Rho K03628 rho; transcription termination factor Rho
D YSQ_05615 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSQ_02860 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSQ_02055 polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D YSQ_06280 polyphosphate kinase K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D YSQ_02510 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D YSQ_03445 carbon storage regulator K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:ccf03011]
D YSQ_04755 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D YSQ_03075 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D YSQ_09700 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D YSQ_00895 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D YSQ_09645 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D YSQ_03635 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D YSQ_07385 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D YSQ_09660 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D YSQ_01515 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D YSQ_09735 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D YSQ_00900 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D YSQ_07390 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D YSQ_00905 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D YSQ_09665 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D YSQ_04860 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D YSQ_05800 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D YSQ_09685 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D YSQ_03625 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D YSQ_09710 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D YSQ_00810 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D YSQ_08035 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D YSQ_07465 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D YSQ_09715 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D YSQ_09730 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D YSQ_09725 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D YSQ_09670 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D YSQ_09655 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D YSQ_06010 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D YSQ_07460 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D YSQ_07470 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D YSQ_07455 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D YSQ_01510 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D YSQ_09680 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D YSQ_09640 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D YSQ_09695 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D YSQ_00885 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D YSQ_09650 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D YSQ_05780 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D YSQ_08720 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D YSQ_00465 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D YSQ_09705 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D YSQ_09720 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D YSQ_09675 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D YSQ_00470 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D YSQ_07615 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D YSQ_09690 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D YSQ_08945 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D YSQ_08230 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D YSQ_07490 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D YSQ_05045 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D YSQ_08725 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D YSQ_00910 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D YSQ_08335 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D YSQ_00175 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSQ_07705 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSQ_05655 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSQ_07725 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_05675 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_00155 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSQ_07710 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSQ_05660 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:ccf03009]
D YSQ_00625 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YSQ_06025 GTPase Era K03595 era; GTPase
D YSQ_00475 GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-]
D YSQ_09275 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor
D YSQ_07565 nusA; transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA
D YSQ_07975 transcription antitermination protein NusB K03625 nusB; transcription antitermination protein NusB
D YSQ_07475 nusG; transcription antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG
D YSQ_09750 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D YSQ_08950 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D YSQ_04055 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YSQ_05885 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D YSQ_08940 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D YSQ_02545 hemolysin K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D YSQ_08935 RNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D YSQ_09270 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D YSQ_09760 50S rRNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D YSQ_09740 ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D YSQ_00115 ribosomal pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YSQ_05810 ribosomal large subunit pseudouridine synthase C K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YSQ_06405 ribosomal pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D YSQ_02325 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D YSQ_05790 ribosome maturation protein RimM K02860 rimM; 16S rRNA processing protein RimM
D YSQ_01640 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D YSQ_03380 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D YSQ_06130 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D YSQ_07955 GTP-binding protein Der K03977 engA; GTPase
D YSQ_06365 potassium-transporting ATPase subunit C K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D YSQ_09215 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D YSQ_09210 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP
D YSQ_01845 hypothetical protein K09710 ybeB; ribosome-associated protein
D YSQ_09300 heat-shock protein K07042 ybeY; probable rRNA maturation factor
D YSQ_04575 ychF; GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:ccf03016]
D YSQ_05445 multifunctional Cca protein K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D YSQ_05185 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_02420 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_07140 prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D YSQ_03675 isoleucyl-tRNA synthase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D YSQ_03530 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YSQ_05215 methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D YSQ_03110 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YSQ_07880 lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D YSQ_06105 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YSQ_07310 alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D YSQ_08830 threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D YSQ_07940 seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D YSQ_05390 cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D YSQ_05530 valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D YSQ_05580 histidyl-tRNA synthase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D YSQ_04735 phenylalanyl-tRNA synthetase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D YSQ_04740 phenylalanyl-tRNA synthetase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D YSQ_06360 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YSQ_07945 tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D YSQ_04730 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YSQ_06395 tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D YSQ_05270 tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D YSQ_03450 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D YSQ_01625 tRNA pseudouridine synthase D K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D YSQ_08735 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YSQ_08995 tRNA delta(2)-isopentenylpyrophosphate transferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D YSQ_05020 tRNA modification GTPase TrmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D YSQ_03045 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YSQ_01380 segregation protein A K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D YSQ_09605 CysQ protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D YSQ_05040 ribonuclease P K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D YSQ_07100 bacterial RNase P K01978 rnpB; M1 RNA
D YSQ_05830 glycyl-tRNA synthetase K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D YSQ_02750 glycyl-tRNA synthetase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D YSQ_09285 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D YSQ_07575 (dimethylallyl)adenosine tRNA methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D YSQ_02555 tRNA methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D YSQ_04140 tRNA methyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D YSQ_05250 tRNA (uracil-5-)-methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D YSQ_05785 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D YSQ_04700 RNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D YSQ_07365 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D YSQ_06125 hypothetical protein K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D YSQ_00280 thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YSQ_00665 ATP-binding protein K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D YSQ_09315 PP-loop family protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D YSQ_06345 FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D YSQ_02490 S-adenosylmethionine tRNA ribosyltransferase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D YSQ_00095 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D YSQ_08965 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D YSQ_08970 radical SAM protein K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D YSQ_09840 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D YSQ_08610 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D YSQ_07340 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D YSQ_03990 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D YSQ_01645 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D YSQ_09235 glycoprotease K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D YSQ_02135 protein kinase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D YSQ_05995 ATP-binding protein K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D YSQ_08420 MoeB/ThiF family protein K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D YSQ_06150 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D YSQ_02635 polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ccf03012]
D YSQ_09220 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YSQ_08825 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D YSQ_03080 elongation factor Ts K02357 tsf; elongation factor Ts
D YSQ_07495 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YSQ_07380 fusA; elongation factor P K02355 fusA; elongation factor G
D YSQ_01960 translation elongation factor K03833 selB; selenocysteine-specific elongation factor
D YSQ_00805 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D YSQ_08765 ribosome-recycling factor K02838 frr; ribosome recycling factor
D YSQ_05740 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D YSQ_08330 peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D YSQ_00915 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D YSQ_07095 elongation factor P K02356 efp; elongation factor P
D YSQ_01635 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:ccf03110]
D YSQ_03420 ATP-dependent Clp protease ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D YSQ_07295 molecular chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D YSQ_08595 ATP-dependent protease K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D YSQ_06020 ATP-dependent protease K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D YSQ_07250 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YSQ_05615 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSQ_02860 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSQ_06305 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YSQ_03850 adenylosuccinate lyase K03686 dnaJ; molecular chaperone DnaJ
D YSQ_02775 cobalamin ABC transporter permease K05516 cbpA; curved DNA-binding protein
D YSQ_05010 molecular chaperone DnaJ K05801 djlA; DnaJ like chaperone protein
D YSQ_05620 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D YSQ_02865 molecular chaperone GroES K04078 groES; chaperonin GroES
D YSQ_02780 serine protease K04771 degP; serine protease Do [EC:3.4.21.107]
D YSQ_03385 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YSQ_04015 ATPase AAA K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D YSQ_02965 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D YSQ_04680 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D YSQ_06165 hydrogenase nickel incorporation protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D YSQ_06185 hydrogenase K04652 hypB; hydrogenase nickel incorporation protein HypB
D YSQ_03130 peptidylprolyl isomerase K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D YSQ_05880 peptidyl-prolyl cis-trans isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D YSQ_09330 peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D YSQ_02580 peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D YSQ_08905 thioredoxin K03671 TXN; thioredoxin
D YSQ_06985 thiol K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YSQ_01965 hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YSQ_06285 thiol:disulfide interchange protein K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:ccf04131]
D YSQ_08220 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D YSQ_01855 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YSQ_07925 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YSQ_07250 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:ccf03051]
D YSQ_07250 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:ccf03032]
D YSQ_00620 ribonuclease H K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D YSQ_04660 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YSQ_00005 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D YSQ_07060 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D YSQ_00610 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YSQ_06470 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D YSQ_09985 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_03630 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_06605 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_05760 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSQ_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSQ_06155 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSQ_02525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSQ_07605 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSQ_03175 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSQ_00070 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D YSQ_02535 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YSQ_03885 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YSQ_00015 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YSQ_09625 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YSQ_09995 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ccf03036]
D YSQ_00625 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D YSQ_04660 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YSQ_02775 cobalamin ABC transporter permease K05516 cbpA; curved DNA-binding protein
D YSQ_00005 chromosomal replication initiation protein K02313 dnaA; chromosomal replication initiator protein
D YSQ_01230 DNA polymerase sliding clamp subunit K04047 dps; starvation-inducible DNA-binding protein
D YSQ_05875 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YSQ_06390 ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YSQ_07230 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D YSQ_04865 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D YSQ_03830 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YSQ_06385 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YSQ_05870 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YSQ_06350 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D YSQ_08050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSQ_08590 rod shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D YSQ_06410 rod shape-determining protein RodA K05837 rodA; rod shape determining protein RodA
D YSQ_09940 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D YSQ_09405 sporulation initiation inhibitor Soj K03496 parA; chromosome partitioning protein
D YSQ_09400 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D YSQ_03045 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D YSQ_04055 methyltransferase GidB K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D YSQ_04815 integrase K04763 xerD; integrase/recombinase XerD
D YSQ_06435 recombinase XerC K04763 xerD; integrase/recombinase XerD
D YSQ_00835 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YSQ_01130 cell filamentation protein Fic K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D YSQ_06055 GTP-binding protein YsxC K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:ccf03400]
D YSQ_05225 methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D YSQ_00435 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D YSQ_00765 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D YSQ_02575 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D YSQ_05055 family 4 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D YSQ_08680 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D YSQ_00145 recombination protein RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D YSQ_02535 NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D YSQ_08165 UvrABC system subunit A K03701 uvrA; excinuclease ABC subunit A
D YSQ_05975 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
D YSQ_02685 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
D YSQ_05520 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSQ_03455 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D YSQ_07450 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D YSQ_07445 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D YSQ_00890 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D YSQ_06370 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D YSQ_03560 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D YSQ_03740 DNA strand exchange inhibitor protein K07456 mutS2; DNA mismatch repair protein MutS2
D YSQ_08250 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D YSQ_03695 coiled-coil protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D YSQ_05760 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D YSQ_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D YSQ_06155 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D YSQ_02525 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D YSQ_07605 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D YSQ_03175 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D YSQ_09985 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_03630 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_06605 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_09575 recombinase RecA K03553 recA; recombination protein RecA
D YSQ_05405 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D YSQ_02040 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D YSQ_05955 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D YSQ_04205 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
D YSQ_02960 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
D YSQ_07545 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D YSQ_06320 recombinase RecR K06187 recR; recombination protein RecR
D YSQ_06095 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D YSQ_03885 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D YSQ_00015 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D YSQ_09625 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YSQ_09995 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D YSQ_04660 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta
D YSQ_00125 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D YSQ_08780 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:ccf03029]
D YSQ_03060 ubiquinol cytochrome C oxidoreductase K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D YSQ_09220 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D YSQ_08825 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D YSQ_03080 elongation factor Ts K02357 tsf; elongation factor Ts
D YSQ_07495 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YSQ_07380 fusA; elongation factor P K02355 fusA; elongation factor G
D YSQ_06025 GTPase Era K03595 era; GTPase
D YSQ_06360 tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D YSQ_03530 leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D YSQ_06105 aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D YSQ_03110 arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D YSQ_03685 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D YSQ_03000 glutamyl amidotransferase K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D YSQ_07895 glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D YSQ_02570 endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D YSQ_06735 endonuclease K01173 ENDOG; endonuclease G, mitochondrial
D YSQ_09985 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_03630 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_06605 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D YSQ_09255 membrane protein K07277 SAM50; outer membrane protein insertion porin family
D YSQ_05615 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSQ_05620 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D YSQ_02860 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSQ_02865 molecular chaperone GroES K04078 groES; chaperonin GroES
D YSQ_06305 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ
D YSQ_03850 adenylosuccinate lyase K03686 dnaJ; molecular chaperone DnaJ
D YSQ_08735 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D YSQ_00835 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning
D YSQ_05030 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSQ_04670 hypothetical protein K07152 SCO1; protein SCO1
D YSQ_07250 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ccf02000]
D YSQ_05385 ABC transporter permease K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D YSQ_03320 ABC transporter ATP-binding protein K24846 pglK; ATP-binding cassette, subfamily B, bacterial PglK [EC:7.5.2.-]
D YSQ_06265 macrolide ABC transporter ATP-binding protein K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D YSQ_00960 multidrug ABC transporter ATP-binding protein K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D YSQ_08375 molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D YSQ_08385 molybdenum ABC transporter permease K02018 modB; molybdate transport system permease protein
D YSQ_08390 GTPase K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D YSQ_01200 tungsten ABC transporter substrate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D YSQ_01205 ABC transporter permease K05773 tupB; tungstate transport system permease protein
D YSQ_01210 hypothetical protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D YSQ_09055 iron deficiency-induced protein A K02012 afuA; iron(III) transport system substrate-binding protein
D YSQ_09050 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein
D YSQ_09045 iron ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D YSQ_05715 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D YSQ_05695 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D YSQ_05700 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D YSQ_05690 spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D YSQ_00560 ABC transporter substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D YSQ_00570 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D YSQ_00565 sulfate ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D YSQ_00555 hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D YSQ_01995 toluene tolerance protein K07323 mlaC; phospholipid transport system substrate-binding protein
D YSQ_06230 phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D YSQ_06225 phosphate ABC transporter permease K02037 pstC; phosphate transport system permease protein
D YSQ_06220 phosphate ABC transporter permease K02038 pstA; phosphate transport system permease protein
D YSQ_06215 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D YSQ_04620 amino acid ABC transporter substrate-binding protein K10039 peb1A; aspartate/glutamate/glutamine transport system substrate-binding protein
D YSQ_04625 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D YSQ_04630 amino acid ABC transporter permease K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D YSQ_04615 ABC transporter ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D YSQ_05680 ABC transporter substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D YSQ_04715 amino acid ABC transporter permease K17077 artQ; arginine/lysine/histidine transport system permease protein
D YSQ_04710 peptide ABC transporter ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D YSQ_03925 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSQ_03930 branched-chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D YSQ_03935 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein
D YSQ_03940 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein
D YSQ_03945 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D YSQ_03950 livF; amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D YSQ_05545 methionine ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSQ_05550 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSQ_05555 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSQ_02985 ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D YSQ_05540 methionine ABC transporter permease K02072 metI; D-methionine transport system permease protein
D YSQ_05535 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D YSQ_04110 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YSQ_05320 amino acid ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D YSQ_04935 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YSQ_07525 amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YSQ_07530 polar amino acid ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein
D YSQ_07520 glutamine ABC transporter ATP-binding protein K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D YSQ_00975 peptide ABC transporter substrate-binding protein K25103 nikZ; nickel transport system substrate-binding protein
D YSQ_00980 peptide ABC transporter permease K25104 nikY; nickel transport system permease protein
D YSQ_00985 peptide ABC transporter permease K25105 nikX; nickel transport system permease protein
D YSQ_00990 peptide ABC transporter ATP-binding protein K25106 nikW; nickel transport system ATP-binding protein [EC:7.2.2.11]
D YSQ_00995 peptide ABC transporter ATP-binding protein K25107 nikV; nickel transport system ATP-binding protein [EC:7.2.2.11]
D YSQ_02080 enterochelin ABC transporter substrate-binding protein K25282 yclQ; iron-siderophore transport system substrate-binding protein
D YSQ_02090 iron ABC transporter permease K25283 yclO; iron-siderophore transport system permease protein
D YSQ_02095 iron ABC transporter permease K25284 yclN; iron-siderophore transport system permease protein
D YSQ_02085 iron ABC transporter ATP-binding protein K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D YSQ_00780 hemin transporter K25034 btuF; cobalamin transport system substrate-binding protein
D YSQ_00790 iron ABC transporter K25027 btuC; cobalamin transport system permease protein
D YSQ_00785 heme ABC transporter ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D YSQ_09180 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D YSQ_05120 ABC transporter substrate-binding protein K09815 znuA; zinc transport system substrate-binding protein
D YSQ_09190 membrane protein K09816 znuB; zinc transport system permease protein
D YSQ_09185 cation ABC transporter ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D YSQ_01670 capsule polysaccharide transporter K09688 kpsM; capsular polysaccharide transport system permease protein
D YSQ_01680 capsule polysaccharide transporter K10107 kpsE; capsular polysaccharide transport system permease protein
D YSQ_01675 ABC transporter ATP-binding protein K09689 kpsT; capsular polysaccharide transport system ATP-binding protein [EC:7.6.2.12]
D YSQ_05275 membrane protein K07091 lptF; lipopolysaccharide export system permease protein
D YSQ_08325 membrane protein K11720 lptG; lipopolysaccharide export system permease protein
D YSQ_05990 lipopolysaccharide ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D YSQ_06385 cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D YSQ_06390 ABC transporter ATP-binding protein K09812 ftsE; cell division transport system ATP-binding protein
D YSQ_04950 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YSQ_00495 membrane protein K02004 ABC.CD.P; putative ABC transport system permease protein
D YSQ_00500 ABC transporter permease K02004 ABC.CD.P; putative ABC transport system permease protein
D YSQ_00490 GTPase K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YSQ_03085 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D YSQ_00205 transporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D YSQ_07410 major facilitator transporter K02429 fucP; MFS transporter, FHS family, L-fucose permease
D YSQ_04250 alpha-ketoglutarate permease K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D YSQ_00770 alpha-ketoglutarate permease K03761 kgtP; MFS transporter, MHS family, alpha-ketoglutarate permease
D YSQ_00955 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YSQ_08705 MFS transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D YSQ_07420 MFS transporter K26580 rhmT; MFS transporter, ACS family, inner membrane transport protein
D YSQ_03820 MFS transporter K03449 MFS.CP; MFS transporter, CP family, cyanate transporter
D YSQ_00225 multidrug DMT transporter permease K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D YSQ_02610 MFS transporter K08161 mdtG; MFS transporter, DHA1 family, multidrug resistance protein
D YSQ_07560 MFS transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D YSQ_09095 MFS transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D YSQ_07335 ammonium transporter K03320 amt; ammonium transporter, Amt family
D YSQ_08755 membrane protein K19416 yccA; modulator of FtsH protease
D YSQ_08745 mechanosensitive ion channel protein K16052 ynaI; MscS family membrane protein
D YSQ_08195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSQ_02595 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D YSQ_08200 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D YSQ_09075 biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D YSQ_00685 biopolymer transporter ExbB K03561 exbB; biopolymer transport protein ExbB
D YSQ_00680 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D YSQ_09080 biopolymer transporter K03559 exbD; biopolymer transport protein ExbD
D YSQ_09355 biopolymer transporter ExbD K03559 exbD; biopolymer transport protein ExbD
D YSQ_05720 magnesium transporter K03284 corA; magnesium transporter
D YSQ_03985 magnesium transporter CorA K16074 zntB; zinc transporter
D YSQ_07255 chromosome condensation protein CrcB K06199 crcB; fluoride exporter
D YSQ_09100 transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D YSQ_01520 outer membrane fibronectin-binding protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D YSQ_07635 ligand-gated channel K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YSQ_05630 ferric enterobactin uptake receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D YSQ_09070 TonB-denpendent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D YSQ_00795 ligand-gated channel K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D YSQ_03865 multidrug transporter K12340 tolC; outer membrane protein
D YSQ_08060 outer membrane channel protein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D YSQ_09255 membrane protein K07277 SAM50; outer membrane protein insertion porin family
D YSQ_03615 hypothetical protein K05807 bamD; outer membrane protein assembly factor BamD
D YSQ_06060 organic solvent tolerance protein OstA K09774 lptA; lipopolysaccharide export system protein LptA
D YSQ_02640 hypothetical protein K04744 lptD; LPS-assembly protein
D YSQ_03160 cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D YSQ_04985 cation transporter K13283 fieF; ferrous-iron efflux pump FieF
D YSQ_08465 zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family
D YSQ_08055 transporter K18138 acrB; multidrug efflux pump
D YSQ_08340 quaternary ammonium compound-resistance protein SugE family protein K18924 ykkC; paired small multidrug resistance pump
D YSQ_08345 quaternary ammonium transporter K18925 ykkD; paired small multidrug resistance pump
D YSQ_03115 multidrug transporter K11742 mdtI; spermidine export protein MdtI
D YSQ_03120 multidrug transporter K11743 mdtJ; spermidine export protein MdtJ
D YSQ_00055 sodium:proton antiporter K07084 yuiF; putative amino acid transporter
D YSQ_00445 C4-dicarboxylate ABC transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D YSQ_05980 C4-dicarboxylate ABC transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D YSQ_00395 lactate permease K03303 lutP; lactate permease
D YSQ_01390 sodium:proline symporter K11928 putP; sodium/proline symporter
D YSQ_00045 actP; actetate permease K14393 actP; cation/acetate symporter
D YSQ_03475 serine/threonine transporter SstT K07862 sstT; serine/threonine transporter
D YSQ_00525 nhaA; sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D YSQ_00530 nhaA; sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D YSQ_02765 potassium transporter K03455 KEA1_2_3; K+:H+ antiporter
D YSQ_02445 potassium transporter K03498 trkH; trk/ktr system potassium uptake protein
D YSQ_02440 potassium transporter K03499 trkA; trk/ktr system potassium uptake protein
D YSQ_02010 guanine permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D YSQ_00700 septum site-determining protein K03837 sdaC; serine transporter
D YSQ_07235 Na/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter
D YSQ_03050 arsenic transporter K03893 arsB; arsenical pump membrane protein
D YSQ_01270 C4-dicarboxylate ABC transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D YSQ_01905 C4-dicarboxylate ABC transporter K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D YSQ_05395 membrane protein K03980 murJ; putative peptidoglycan lipid II flippase
D YSQ_05435 membrane protein K24180 mleP; malate permease and related proteins
D YSQ_03755 amino acid transporter LysE K06895 lysE; L-lysine exporter family protein LysE/ArgO
D YSQ_05460 threonine transporter RhtB K05834 rhtB; homoserine/homoserine lactone efflux protein
D YSQ_05470 branched-chain amino acid permease K26605 azlC; branched chain amino acid efflux pump
D YSQ_05465 branched-chain amino acid ABC transporter K26606 azlD; branched chain amino acid efflux pump
D YSQ_08265 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein
D YSQ_08260 tricarboxylate transporter K07794 tctB; putative tricarboxylic transport membrane protein
D YSQ_08255 tricarboxylic transport membrane protein K07795 tctC; putative tricarboxylic transport membrane protein
D YSQ_03410 membrane protein K05595 marC; multiple antibiotic resistance protein
D YSQ_03830 cell division protein FtsW K03588 ftsW; cell division protein FtsW
D YSQ_09000 membrane protein K23242 mntP; manganese efflux pump family protein
D YSQ_00515 iron permease K07243 FTR; high-affinity iron transporter
D YSQ_00510 iron transporter K07230 p19; periplasmic iron binding protein
D YSQ_05115 membrane protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D YSQ_09085 biopolymer transporter TonB K03832 tonB; periplasmic protein TonB
D YSQ_09350 energry transducer TonB K03832 tonB; periplasmic protein TonB
D YSQ_05635 cell envelope protein TonB K03832 tonB; periplasmic protein TonB
D YSQ_09340 peptidoglycan associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D YSQ_09345 tolB; translocation protein TolB K03641 tolB; TolB protein
D YSQ_08050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSQ_06270 ABC transporter substrate-binding protein K13888 macA; membrane fusion protein, macrolide-specific efflux system
D YSQ_09090 transporter K17938 sbmA; peptide/bleomycin uptake transporter
D YSQ_05775 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17]
C 02044 Secretion system [BR:ccf02044]
D YSQ_03865 multidrug transporter K12340 tolC; outer membrane protein
D YSQ_01540 type II protein secretion system D protein K02453 gspD; general secretion pathway protein D
D YSQ_01555 type II protein secretion system E protein K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D YSQ_01560 general secretion pathway protein F K02455 gspF; general secretion pathway protein F
D YSQ_02140 N-terminal cleavage protein K02456 gspG; general secretion pathway protein G
D YSQ_05960 prepilin K02456 gspG; general secretion pathway protein G
D YSQ_05280 multidrug transporter K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D YSQ_05190 membrane protein K02221 yggT; YggT family protein
D YSQ_02910 competence protein K02238 comEC; competence protein ComEC
D YSQ_03880 phosphoribosyltransferase K02242 comFC; competence protein ComFC
D YSQ_04850 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YSQ_08205 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YSQ_05170 hypothetical protein K04061 flhB2; flagellar biosynthesis protein
D YSQ_08300 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YSQ_08290 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YSQ_00310 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D YSQ_08125 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YSQ_05305 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YSQ_09585 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YSQ_03090 flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YSQ_10050 hypothetical protein K03203 virB8; type IV secretion system protein VirB8
D YSQ_10040 hypothetical protein K03195 virB10; type IV secretion system protein VirB10
D YSQ_10030 conjugal transfer protein K03196 virB11; type IV secretion system protein VirB11 [EC:7.4.2.8]
D YSQ_10020 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8]
D YSQ_10045 hypothetical protein K12049 comB9; ComB9 competence protein
D YSQ_10000 hypothetical protein K12052 comB6; ComB6 competence protein
D YSQ_10060 ATPase AAA K12053 comB4; ComB4 competence protein
D YSQ_06930 conjugal transfer protein TraG K12056 traG; conjugal transfer mating pair stabilization protein TraG
D YSQ_06840 hypothetical protein K12057 traF; conjugal transfer pilus assembly protein TraF
D YSQ_06935 conjugal transfer protein TraN K12058 traN; conjugal transfer mating pair stabilization protein TraN
D YSQ_06850 conjugal transfer protein TraU K12060 traU; conjugal transfer pilus assembly protein TraU
D YSQ_06845 chromosome segregation protein ParM K12061 traW; conjugal transfer pilus assembly protein TraW
D YSQ_06965 conjugal transfer protein TraG K12063 traC; conjugal transfer ATP-binding protein TraC
D YSQ_06990 conjugal transfer protein TraB K12065 traB; conjugal transfer pilus assembly protein TraB
D YSQ_06995 hypothetical protein K12066 traK; conjugal transfer pilus assembly protein TraK
D YSQ_07000 conjugal transfer protein TraE K12067 traE; conjugal transfer pilus assembly protein TraE
D YSQ_06645 conjugal transfer protein TraD K12071 traD; conjugal transfer pilus assembly protein TraD
D YSQ_06985 thiol K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YSQ_01965 hypothetical protein K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D YSQ_06955 conjugal transfer protein TraG K12072 traH; conjugative transfer pilus assembly protein TraH
D YSQ_04955 secA; preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D YSQ_03520 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D YSQ_07480 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D YSQ_03525 secF; preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D YSQ_08760 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D YSQ_09635 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D YSQ_05805 signal recognition particle K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D YSQ_02935 cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D YSQ_03515 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D YSQ_05030 insertase K03217 yidC; YidC/Oxa1 family membrane protein insertase
D YSQ_03105 preprotein translocase subunit TatA K03116 tatA; sec-independent protein translocase protein TatA
D YSQ_02500 preprotein translocase subunit TatB K03117 tatB; sec-independent protein translocase protein TatB
D YSQ_02495 preprotein translocase subunit TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:ccf02042]
D YSQ_08445 cytochrome C oxidase subunit I K11013 cdtA; cytolethal distending toxin subunit A
D YSQ_08450 cytochrome C oxidase subunit II K11014 cdtB; cytolethal distending toxin subunit B
D YSQ_08455 toxin K11015 cdtC; cytolethal distending toxin subunit C
D YSQ_09100 transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:ccf02022]
D YSQ_02790 ATPase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSQ_02845 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSQ_06315 sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D YSQ_06310 chemotaxis protein CheY K02483 K02483; two-component system, OmpR family, response regulator
D YSQ_08105 chemotaxis protein CheY K02483 K02483; two-component system, OmpR family, response regulator
D YSQ_02785 chemotaxis protein CheY K02483 K02483; two-component system, OmpR family, response regulator
D YSQ_04770 chemotaxis protein CheY K02483 K02483; two-component system, OmpR family, response regulator
D YSQ_04885 signal transduction histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D YSQ_03900 ATPase AAA K02481 flgR; two-component system, NtrC family, response regulator
D YSQ_08490 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YSQ_03375 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YSQ_04605 chemotaxis protein B K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YSQ_08485 chemotaxis protein CheY K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
C 02035 Bacterial motility proteins [BR:ccf02035]
D YSQ_08490 chemotaxis protein A K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D YSQ_08495 chemotaxis protein K03408 cheW; purine-binding chemotaxis protein CheW
D YSQ_04610 SAM-dependent methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D YSQ_04605 chemotaxis protein B K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D YSQ_03375 chemotaxis protein CheY K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D YSQ_08485 chemotaxis protein CheY K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D YSQ_07730 chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_05000 membrane protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_08645 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein
D YSQ_08290 flagellar assembly protein FliH K02411 fliH; flagellar assembly protein FliH
D YSQ_05305 flagellar biosynthesis protein FliP K02419 fliP; flagellar biosynthesis protein FliP
D YSQ_09585 flagellar biosynthesis protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ
D YSQ_03090 flagellar biosynthesis protein FliR K02421 fliR; flagellar biosynthesis protein FliR
D YSQ_04850 flhA; flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA
D YSQ_08205 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB
D YSQ_08295 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D YSQ_00315 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM
D YSQ_00310 flagellar motor switch protein FliY K02417 fliN; flagellar motor switch protein FliN
D YSQ_08125 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN
D YSQ_08300 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D YSQ_01595 flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D YSQ_05910 flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D YSQ_01830 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL
D YSQ_07225 fliE; flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D YSQ_00250 flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D YSQ_07215 flagellar basal body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D YSQ_07220 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D YSQ_00255 flgD; flagellar basal body rod modification protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D YSQ_05865 flagellar basal body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF
D YSQ_05860 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D YSQ_01590 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ
D YSQ_09870 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE
D YSQ_00260 flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D YSQ_01575 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D YSQ_04870 lagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D YSQ_03890 hypothetical protein K09860 flgP; outer membrane protein FlgP
D YSQ_03895 hypothetical protein K24346 flgQ; flagellar motility protein FlgQ
D YSQ_02160 flagellin K02406 fliC; flagellin
D YSQ_02165 flagellin K02406 fliC; flagellin
D YSQ_05750 flagellin K02406 fliC; flagellin
D YSQ_07115 flagellar cap protein FliD K02407 fliD; flagellar hook-associated protein 2
D YSQ_07110 flagellar biosynthesis protein FliS K02422 fliS; flagellar secretion chaperone FliS
D YSQ_00320 RNA polymerase sigma 70 K02405 fliA; RNA polymerase sigma factor FliA
D YSQ_08195 flagellar motor protein MotA K02556 motA; chemotaxis protein MotA
D YSQ_02595 chemotaxis protein MotB K02557 motB; chemotaxis protein MotB
D YSQ_08200 motB; flagellar motor protein MotB K02557 motB; chemotaxis protein MotB
D YSQ_03610 flagellar assembly protein FliW K13626 fliW; flagellar assembly factor FliW
D YSQ_00335 flagellar biosynthesis regulator FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D YSQ_00330 ATP-binding protein K04562 flhG; flagellar biosynthesis protein FlhG
D YSQ_05280 multidrug transporter K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ccf04812]
D YSQ_08590 rod shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D YSQ_05870 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YSQ_05875 cell division protein FtsA K03590 ftsA; cell division protein FtsA
D YSQ_09940 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein
D YSQ_09405 sporulation initiation inhibitor Soj K03496 parA; chromosome partitioning protein
D YSQ_09400 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ccf04147]
D YSQ_07250 heat shock protein Hsp90 K04079 HSP90A; molecular chaperone HtpG
D YSQ_09570 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D YSQ_01855 glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D YSQ_01860 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D YSQ_07925 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D YSQ_08210 peroxidase K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D YSQ_02860 groEL; molecular chaperone GroEL K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D YSQ_05615 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK
D YSQ_01225 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D YSQ_03690 inosine 5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D YSQ_07495 tuf; elongation factor Tu K02358 tuf; elongation factor Tu
D YSQ_04730 hypothetical protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D YSQ_03140 lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D YSQ_06110 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D YSQ_04590 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D YSQ_04570 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D YSQ_06005 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D YSQ_05210 fructose-1 6-bisphosphatase K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D YSQ_05855 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D YSQ_04065 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D YSQ_04765 3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D YSQ_05005 phosphoribosylaminoimidazolecarboxamide formyltransferase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D YSQ_01865 triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D YSQ_01155 biotin transporter BioY K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:ccf02048]
D YSQ_06570 hypothetical protein K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D YSQ_01145 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D YSQ_01135 type I restriction modification protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D YSQ_03780 type I restriction endonuclease subunit S K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D YSQ_01125 DNA methyltransferase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D YSQ_03765 type I restriction-modification protein subunit M K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D YSQ_00185 type II restriction endonuclease K07317 K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D YSQ_08820 DNA modification methylase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D YSQ_08520 DNA methylase N-4 K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D YSQ_09195 restriction endonuclease K19147 mcrC; 5-methylcytosine-specific restriction enzyme subunit McrC
D YSQ_06525 growth inhibitor PemK K07171 mazF; mRNA interferase MazF [EC:3.1.-.-]
D YSQ_02830 CopG family transcriptional regulator K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D YSQ_06920 hypothetical protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D YSQ_10085 hypothetical protein K19157 yafQ; mRNA interferase YafQ [EC:3.1.-.-]
D YSQ_05870 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D YSQ_08590 rod shape-determining protein Mbl K03569 mreB; rod shape-determining protein MreB and related proteins
D YSQ_05185 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_02420 glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D YSQ_08735 cysteine desulfarase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:ccf01504]
D YSQ_08395 beta-lactamase K19210 blaOXA-61; beta-lactamase class D OXA-61 [EC:3.5.2.6]
D YSQ_07560 MFS transporter K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein
D YSQ_08050 hemolysin D K03585 acrA; membrane fusion protein, multidrug efflux system
D YSQ_08055 transporter K18138 acrB; multidrug efflux pump
D YSQ_08060 outer membrane channel protein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D YSQ_03865 multidrug transporter K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:ccf00536]
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:ccf03100]
D YSQ_00160 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSQ_05670 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSQ_07720 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSQ_09785 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D YSQ_03980 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSQ_07375 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSQ_09535 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSQ_09540 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D YSQ_02795 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D YSQ_04900 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YSQ_04920 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D YSQ_00735 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D YSQ_02460 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D YSQ_04910 tRNA-Arg K14224 tRNA-Glu; tRNA Glu
D YSQ_09005 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D YSQ_00745 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSQ_04785 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSQ_07505 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D YSQ_09545 tRNA-His K14226 tRNA-His; tRNA His
D YSQ_00165 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSQ_05665 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSQ_07715 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D YSQ_09530 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSQ_00740 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSQ_04540 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSQ_04875 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D YSQ_04915 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YSQ_04930 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D YSQ_02455 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSQ_06415 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSQ_09770 tRNA-Met K14230 tRNA-Met; tRNA Met
D YSQ_02450 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D YSQ_09550 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D YSQ_02070 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSQ_00730 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSQ_09775 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D YSQ_07500 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YSQ_07515 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D YSQ_07485 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D YSQ_07510 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D YSQ_04905 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSQ_04925 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSQ_09790 tRNA-Val K14237 tRNA-Val; tRNA Val
D YSQ_01405 tRNA-Sec K14238 tRNA-Sec; tRNA Sec
D YSQ_07725 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_05675 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_00155 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D YSQ_00170 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSQ_07710 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSQ_05660 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D YSQ_00175 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSQ_07705 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSQ_05655 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D YSQ_07100 bacterial RNase P K01978 rnpB; M1 RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D YSQ_01115 solA; N-methyltryptophan oxidase K02846 solA; N-methyl-L-tryptophan oxidase [EC:1.5.3.-]
D YSQ_01165 NADPH quinone reductase MdaB K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D YSQ_06120 methionine sulfoxide reductase A K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D YSQ_03405 methionine sulfoxide reductase B K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D YSQ_07990 sulfoxide reductase catalytic subunit YedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D YSQ_08090 cytochrome C biogenesis protein CcsA K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D YSQ_08615 bacterioferritin comigratory protein K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YSQ_05510 thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D YSQ_06335 hydrogenase 2 large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D YSQ_06340 quinone-reactive Ni/Fe-hydrogenase small chain K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D YSQ_01875 oxidoreductase K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D YSQ_06240 ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D YSQ_00025 4-cresol dehydrogenase K24452 pinA; (+)-pinoresinol hydroxylase [EC:1.17.9.2]
D YSQ_00040 cytochrome CBB3 K24453 pinB; (+)-pinoresinol hydroxylase [EC:1.17.9.2]
D YSQ_08795 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D YSQ_03070 SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D YSQ_08070 radical SAM protein K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D YSQ_03505 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D YSQ_08415 acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-]
D YSQ_03415 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D YSQ_03845 arginyl-tRNA-protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D YSQ_03340 general glycosylation pathway protein K17251 pglB; undecaprenyl-diphosphooligosaccharide---protein glycotransferase [EC:2.4.99.19]
D YSQ_07850 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D YSQ_05920 adenylylsulfate kinase K23148 E2.7.1.224; cytidine diphosphoramidate kinase [EC:2.7.1.224]
D YSQ_05940 hypothetical protein K22424 E2.7.3.13; glutamine kinase [EC:2.7.3.13]
D YSQ_05950 sugar nucleotidyltransferase K01009 E2.7.7.103; L-glutamine-phosphate cytidylyltransferase [EC:2.7.7.103]
D YSQ_03350 UDP-galactose phosphate transferase K15915 pglC; undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase [EC:2.7.8.36]
D YSQ_05065 acyl-CoA thioester hydrolase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D YSQ_04030 phosphoglycerate mutase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D YSQ_06085 TatD family hydrolase K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D YSQ_09150 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D YSQ_02950 hypothetical protein K22278 pgdA; peptidoglycan-N-acetylglucosamine deacetylase [EC:3.5.1.104]
D YSQ_01910 endoribonuclease L-PSP K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D YSQ_01120 esterase K07002 RBBP9; serine hydrolase [EC:3.-.-.-]
D YSQ_07400 hypothetical protein K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32]
D YSQ_09555 DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D YSQ_03170 cation-transporting ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D YSQ_00390 oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE
D YSQ_00385 iron-sulfur protein K18929 lldF; L-lactate dehydrogenase complex protein LldF
D YSQ_00380 hypothetical protein K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D YSQ_01365 formate dehydrogenase accessory protein FdhD K02379 fdhD; FdhD protein
D YSQ_08740 nitrogen-fixing protein NifU K13819 K13819; NifU-like protein
D YSQ_05480 oxidoreductase K02570 napD; periplasmic nitrate reductase NapD
D YSQ_01940 flavodoxin K03839 fldA; flavodoxin I
D YSQ_05500 quinol dehydrogenase K02573 napG; ferredoxin-type protein NapG
D YSQ_05495 quinol dehydrogenase K02574 napH; ferredoxin-type protein NapH
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D YSQ_05755 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D YSQ_03220 lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B) K07270 K07270; glycosyl transferase, family 25
C 99987 Cofactor metabolism
D YSQ_05205 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
C 99974 Translation
C 99975 Protein processing
D YSQ_04995 hypothetical protein K03668 hslJ; heat shock protein HslJ
D YSQ_03425 ATP-dependent Clp protease ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D YSQ_09160 trigger factor K03545 tig; trigger factor
D YSQ_07995 ferric reductase K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D YSQ_03435 single-stranded DNA-binding protein K03664 smpB; SsrA-binding protein
D YSQ_06180 hydrogenase formation protein K04653 hypC; hydrogenase expression/formation protein HypC
D YSQ_06175 hydrogenase formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D YSQ_06170 hydrogenase assembly protein HupF K04655 hypE; hydrogenase expression/formation protein HypE
D YSQ_06190 3-hydroxydecanoyl-ACP:CoA transacylase K04656 hypF; hydrogenase maturation protein HypF
D YSQ_09145 Fis family transcriptional regulator K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D YSQ_03570 nuclease K07457 K07457; endonuclease III related protein
D YSQ_08910 hypothetical protein K07460 yraN; putative endonuclease
D YSQ_06135 DNA processing protein DprA K04096 smf; DNA processing protein
D YSQ_08865 ATPase AAA K07478 ycaJ; putative ATPase
D YSQ_03310 polysaccharide biosynthesis protein K07501 K07501; 3'-5' exonuclease
D YSQ_07035 transposase ISCco1 K07491 rayT; REP-associated tyrosine transposase
D YSQ_07040 transposase IS605 K07496 K07496; putative transposase
C 99979 Viral proteins
C 99998 Others
D YSQ_00590 hypothetical protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D YSQ_03015 phosphate permease K03306 TC.PIT; inorganic phosphate transporter, PiT family
D YSQ_04550 sodium:alanine symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YSQ_04555 sodium:alanine symporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YSQ_06295 transporter K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D YSQ_04705 amino acid carrier protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D YSQ_00275 C4-dicarboxylate ABC transporter K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
C 99978 Cell growth
D YSQ_05025 hypothetical protein K06346 jag; spoIIIJ-associated protein
D YSQ_01180 allophanate hydrolase K06350 kipA; antagonist of KipI
D YSQ_01185 allophanate hydrolase K06351 kipI; inhibitor of KinA
C 99993 Cell motility
D YSQ_00455 hypothetical protein K07337 K07337; penicillin-binding protein activator
C 99995 Signaling proteins
D YSQ_04640 carbon starvation protein CstA K06200 cstA; carbon starvation protein
D YSQ_00240 GTP-binding protein K06207 typA; GTP-binding protein
D YSQ_08015 hypothetical protein K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D YSQ_04960 membrane protein K03634 lolA; outer membrane lipoprotein carrier protein
D YSQ_02000 hypothetical protein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D YSQ_01800 capsule polysaccharide transporter K07266 kpsC; capsular polysaccharide export protein
D YSQ_04945 membrane protein K06143 creD; inner membrane protein
C 99994 Others
D YSQ_02835 iron-binding protein K07216 hr; hemerythrin
D YSQ_00370 iron-binding protein K07216 hr; hemerythrin
D YSQ_00375 hemerythrin family non-heme iron protein K07216 hr; hemerythrin
D YSQ_00760 hemerythrin K07216 hr; hemerythrin
D YSQ_00270 iron-binding protein K07216 hr; hemerythrin
B
B 09194 Poorly characterized
C 99996 General function prediction only
D YSQ_07890 colicin V synthesis protein K03558 cvpA; membrane protein required for colicin V production
D YSQ_01245 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase K03796 bax; Bax protein
D YSQ_07540 group III hemoglobin K06886 glbN; hemoglobin
D YSQ_02905 ribonuclease BN K07058 K07058; membrane protein
D YSQ_07865 membrane protein K03749 dedD; DedD protein
D YSQ_09110 PhnA domain protein K06193 phnA; protein PhnA
C 99997 Function unknown
D YSQ_05235 ankyrin K06867 K06867; uncharacterized protein
D YSQ_01920 ankyrin K06867 K06867; uncharacterized protein
D YSQ_06400 ferrous iron transporter A K06882 K06882; uncharacterized protein
D YSQ_04890 hypothetical protein K06921 K06921; uncharacterized protein
D YSQ_03565 ATP-binding protein K06923 K06923; uncharacterized protein
D YSQ_05260 CoA-binding protein K06929 K06929; uncharacterized protein
D YSQ_07360 hypothetical protein K06940 K06940; uncharacterized protein
D YSQ_05795 RNA-binding protein K06960 K06960; uncharacterized protein
D YSQ_00305 peptidase C39 K06992 K06992; uncharacterized protein
D YSQ_01990 membrane protein K07003 K07003; uncharacterized protein
D YSQ_08160 membrane protein K07090 K07090; uncharacterized protein
D YSQ_01565 membrane protein K07090 K07090; uncharacterized protein
D YSQ_08895 transcriptional initiation protein Tat K07093 K07093; uncharacterized protein
D YSQ_04845 hypothetical protein K07097 K07097; uncharacterized protein
D YSQ_05180 metallophosphoesterase K07098 K07098; uncharacterized protein
D YSQ_09860 membrane protein K07112 K07112; uncharacterized protein
D YSQ_01400 membrane protein K07112 K07112; uncharacterized protein
D YSQ_07820 hypothetical protein K07126 K07126; uncharacterized protein
D YSQ_01240 DNA-binding protein K07133 K07133; uncharacterized protein
D YSQ_05820 zinc ribbon domain-containing protein K07164 K07164; uncharacterized protein
D YSQ_05035 membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D YSQ_02470 aspartyl-tRNA amidotransferase subunit B K09117 K09117; uncharacterized protein
D YSQ_01435 membrane protein K09792 K09792; uncharacterized protein
D YSQ_07620 hypothetical protein K09794 K09794; uncharacterized protein
D YSQ_06250 hypothetical protein K09795 K09795; uncharacterized protein
D YSQ_00220 hypothetical protein K09797 K09797; uncharacterized protein
D YSQ_06140 hypothetical protein K09798 K09798; uncharacterized protein
D YSQ_01425 competence/damage-inducible domain protein K09804 K09804; uncharacterized protein
D YSQ_03640 hypothetical protein K09824 virK; uncharacterized protein
D YSQ_00450 hypothetical protein K09859 K09859; uncharacterized protein
D YSQ_04100 hypothetical protein K09861 K09861; uncharacterized protein
D YSQ_05255 membrane protein K09943 K09943; uncharacterized protein
D YSQ_03995 potassium transporter TrkA K09944 K09944; uncharacterized protein
D YSQ_01665 hypothetical protein K09979 K09979; uncharacterized protein
D YSQ_03155 hypothetical protein K09981 K09981; uncharacterized protein
D YSQ_09225 hypothetical protein K07742 ylxR; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 20, 2024