+F Repair protein KO
#
DNA Repair and Recombination Proteins - Corynebacterium casei
%
!
AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CCASEI_12085 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CCASEI_12095 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
C BER (base exicision repair)
D DNA glycosylases
E CCASEI_08010 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E CCASEI_12470 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E CCASEI_01875 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E CCASEI_10340 UvrABC system protein B K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D CCASEI_03980 mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_12755 mutator MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_04025 Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_00110 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_00380 MutT-like domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_06625 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
#
AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D CCASEI_12085 O6-methylguanine-DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CCASEI_12095 O-6-methylguanine DNA methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CCASEI_01075 hypothetical protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E CCASEI_08010 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E CCASEI_09185 TDG/mug DNA glycosylase family protein K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
E CCASEI_12470 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E CCASEI_09995 3-methyladenine DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E CCASEI_12100 DNA-3-methyladenine glycosylase I K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E CCASEI_05850 Formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E CCASEI_13615 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E CCASEI_10190 endonuclease VIII K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E CCASEI_01875 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E CCASEI_12730 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E CCASEI_03380 exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
D DNA ligase
E CCASEI_08490 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E CCASEI_07875 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
E CCASEI_07910 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
E CCASEI_07525 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C
E CCASEI_10625 ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CCASEI_10640 ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CCASEI_10130 ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CCASEI_08490 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F CCASEI_02675 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F CCASEI_02680 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F CCASEI_02975 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F CCASEI_07590 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F CCASEI_09695 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E CCASEI_09525 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E CCASEI_09530 exodeoxyribonuclease small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E CCASEI_05645 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E CCASEI_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E CCASEI_04320 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E CCASEI_02020 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E CCASEI_08305 DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CCASEI_08495 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CCASEI_05700 hypothetical protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CCASEI_01690 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E CCASEI_01720 DNA polymerase III subunits gamma and tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E CCASEI_08490 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E CCASEI_10625 ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CCASEI_10640 ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CCASEI_10130 ATP-dependent DNA helicase II K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E CCASEI_11145 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E CCASEI_13560 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E CCASEI_11840 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
E CCASEI_04340 adenine-specific DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72]
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E CCASEI_06330 recA; recombinase A K03553 recA; recombination protein RecA
E CCASEI_06765 holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E CCASEI_06770 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E CCASEI_06760 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E CCASEI_07575 primosome assembly protein PriA K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E CCASEI_06330 recA; recombinase A K03553 recA; recombination protein RecA
E CCASEI_12455 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms
E CCASEI_00015 recF; recombination protein F K03629 recF; DNA replication and repair protein RecF
E CCASEI_00630 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E CCASEI_08000 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E CCASEI_13110 divergent AAA domain-containing protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E CCASEI_11265 ATPase, AAA_4 family protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E CCASEI_04640 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
E CCASEI_01710 recR; recombination protein RecR K06187 recR; recombination protein RecR
E CCASEI_07705 DNA repair protein RECN K03631 recN; DNA repair protein RecN (Recombination protein N)
E CCASEI_06765 holliday junction DNA helicase K03550 ruvA; holliday junction DNA helicase RuvA
E CCASEI_06770 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E CCASEI_06760 ruvC; Holliday junction resolvase K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
E CCASEI_04575 CRISPR-associated protein K15342 cas1; CRISP-associated protein Cas1
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F CCASEI_00075 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F CCASEI_00025 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F CCASEI_01995 DNA topoisomerase I subunit omega K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F CCASEI_04640 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
F CCASEI_01710 recR; recombination protein RecR K06187 recR; recombination protein RecR
F CCASEI_08490 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F CCASEI_07875 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A
F CCASEI_07910 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D CCASEI_05600 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D CCASEI_06330 recA; recombinase A K03553 recA; recombination protein RecA
D CCASEI_06445 LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CCASEI_07705 DNA repair protein RECN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CCASEI_03230 DNA polymerase involved in DNA repair K14161 imuB; protein ImuB
D CCASEI_03260 dnaE2; error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D CCASEI_11545 DNA polymerase III subunit alpha K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D CCASEI_11145 Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCASEI_13560 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCASEI_11840 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCASEI_06335 recX; recombination regulator RecX K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D CCASEI_11445 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D CCASEI_10195 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D CCASEI_03980 mutator protein mutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_12755 mutator MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_04025 Nudix hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_00110 MutT/NUDIX family protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_00380 MutT-like domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCASEI_08045 NUDIX protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D CCASEI_07690 ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D CCASEI_06625 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CCASEI_11885 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CCASEI_11875 ribonucleoside-diphosphate reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCASEI_01355 nrdF; ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D CCASEI_06190 exopolyphosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
!
#
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024