+E Transcription factors KO
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Transcription Factors - Cellulomonas chengniuliangii
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
D NP064_02445 DNA cytosine methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
E Line #4
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D NP064_09145 helix-turn-helix domain-containing protein K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
C LysR family
D NP064_13500 LysR family transcriptional regulator ArgP K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
C DeoR family
C LacI family
D NP064_14250 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NP064_00500 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NP064_00510 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NP064_01800 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NP064_02290 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NP064_05235 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NP064_06075 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NP064_07275 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D NP064_07350 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG
D NP064_09120 LacI family DNA-binding transcriptional regulator K17640 bxlR; LacI family transcriptional regulator, xylobiose transport system transcriptional regulator
C GntR family
D NP064_05360 GntR family transcriptional regulator K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
C TetR/AcrR family
D NP064_16280 TetR family transcriptional regulator K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
C Lrp/AsnC family
D NP064_10265 Lrp/AsnC family transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
C LuxR family
C MarR family
C MerR family
D NP064_14830 soxR; redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR
D NP064_15410 MerR family transcriptional regulator K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D NP064_13370 MerR family transcriptional regulator K22491 litR; MerR family transcriptional regulator, light-induced transcriptional regulator
C Fur family
D NP064_08405 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D NP064_09635 transcriptional repressor K22297 furA; Fur family transcriptional regulator, stress-responsive regulator
D NP064_15400 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D NP064_01240 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor
D NP064_02220 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D NP064_14740 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
C Rrf2 family
C ArsR family
D NP064_15575 metalloregulator ArsR/SmtB family transcription factor K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D NP064_16030 metalloregulator ArsR/SmtB family transcription factor K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D NP064_16085 winged helix-turn-helix domain-containing protein K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
C XRE family
D NP064_00225 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D NP064_01095 helix-turn-helix domain-containing protein K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D NP064_10065 helix-turn-helix domain-containing protein K27043 clgR; XRE family transcriptional regulator, stress-response regulator
C PadR family
D NP064_00200 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D NP064_04100 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D NP064_12665 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D NP064_03460 metal-dependent transcriptional regulator K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D NP064_05795 metal-dependent transcriptional regulator K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D NP064_04665 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D NP064_14170 redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor
D NP064_00410 helix-turn-helix domain-containing protein K07727 K07727; putative transcriptional regulator
D NP064_14275 helix-turn-helix transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
D NP064_12270 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
B Other transcription factors
C BglG family
C Others
D NP064_14755 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NP064_11900 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NP064_12225 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NP064_13375 WhiB family transcriptional regulator K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NP064_12920 WhiB family transcriptional regulator K18958 whiB7; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D NP064_15845 metal-sensitive transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D NP064_16575 ParB/RepB/Spo0J family partition protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D NP064_02840 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D NP064_12795 hypothetical protein K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D NP064_09555 arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D NP064_05920 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D NP064_08010 pyrR; bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D NP064_03155 TraR/DksA C4-type zinc finger protein K06204 dksA; RNA polymerase-binding transcription factor
D NP064_09740 TraR/DksA family transcriptional regulator K06204 dksA; RNA polymerase-binding transcription factor
D NP064_09915 nrdR; transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR
D NP064_09825 mraZ; division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: May 8, 2024
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Classification taken and modified from TRANSFAC 7.0