+D Transcription factors KO
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Transcription Factors - Clostridium carboxidivorans
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AEukaryotic type
B Basic leucine zipper (bZIP)
C AP-1(-like) components, Jun
C AP-1(-like) components, Fos
C AP-1(-like) components, Maf
C AP-1(-like) components, NF-E2
C AP-1(-like) components, Fungal regulators
C AP-1(-like) components, CRE-BP/ATF
C CREB
C C/EBP-like factors
C bZIP/PAR
C Plant bZIP factors
C ZIP only
B Basic helix-loop-helix (bHLH)
C Ubiquitous (class A) factors
C Myogenic transcription factors
C Achaete-Scute
C Tal/Twist/Atonal/Hen, Lymphoid factors
C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors
C Tal/Twist/Atonal/Hen, HEN
C Tal/Twist/Atonal/Hen, Mesp
C Tal/Twist/Atonal/Hen, Atonal
C Tal/Twist/Atonal/Hen, Pancreatic factors
C Hairy, Hairy/E(SPL)
C Hairy, Fungal regulators
C Factors with PAS domain
C Yabby
C INO
C HLH domain only
B Basic helix-loop-helix/leucine zipper (bHLH-ZIP)
C Ubiquitous bHLH-ZIP factors
C Cell cycle controlling factors, Myc
C Cell cycle controlling factors, Mad/Max
C Other bHLH-ZIP factors
B Other basic domains
C NF-1
C RF-X
C AP-2 (bHSH)
B Zinc finger
C Cys4 thyroid hormone receptor-like
C Cys4 hepatocyte nuclear factor 4-like
C Cys4 estrogen receptor-like
C Cys4 nerve growth factor IB-like
C Cys4 Fushi tarazu-F1-like
C Cys4 germ cell nuclear factor
C Cys4 Knirps/DAX1-like
C Cys4 GATA-factors
C Cys2His2 SP/KLF family and related proteins
C Cys2His2 GLI-like
C Cys2His2 Snail
C Cys2His2 BTB-ZF factors
C Cys2His2 BED
C Cys2His2 PRDM
C Cys2His2 metabolic regulators in fungi
C Cys2His2 others
C Cys2HisCys zinc factors
C Cys3His zinc factors
C Cys2CysHis zinc factors
C CXXC CpG-binding proteins
C Cys6 metabolic regulators in fungi
C Other zinc fingers
B Helix-turn-helix
C Homeo domain ANTP: HOXL
C Homeo domain ANTP: NKL
C Homeo domain Paired-related
C Homeo domain LIM
C Homeo domain POU
C Homeo domain SINE
C Homeo domain ZF
C Homeo domain CUT
C Homeo domain PROS
C Homeo domain TALE
C Homeo domain other
C Fork head/winged helix developmental regulators
C Fork head/winged helix tissue-specific regulators
C Fork head/winged helix cell cycle-controlling factors, E2F
C Fork head/winged helix cell cycle-controlling factors, DP
C Fork head/winged helix other regulators
C Stork head/winged helix factors
C Heat shock factors
C Tryptophan clusters Myb, Myb-factors
C Tryptophan clusters Myb, Myb-like factors
C Tryptophan clusters Ets-type
C Tryptophan clusters interferon-regulating factors
C TEA domain
C ARID
B beta-Scaffold factors with minor groove contacts
C RHR (Rel homology region) Rel/Ankyrin
C RHR (Rel homology region) Ankyrin only
C RHR (Rel homology region) NF-AT
C STAT
C p53
C MADS-box regulators of differentiation, MEF-2
C MADS-box regulators of differentiation, Homeotic genes
C MADS-box regulators of differentiation, Yeast regulators
C MADS-box responders to external signals
C SAND domain-containing proteins
C TATA-binding proteins
C HMG SOX
C HMG TCF-1
C HMG TOX
C HMG2-related
C UBF
C Other HMG box factors
C Heteromeric CCAAT factors
C Grainyhead
C Cold-shock domain factors, DbpA-like
C Cold-shock domain factors, YB-1/DbpB-like
C Cold-shock domain factors, FRG Y2-like
C Runt
C MYRF
B Other transcription factors
C HMGI(Y)
C NUPR
C Pocket domain Rb
C Pocket domain CBP
C T-box
C DMRT
C LRRFIP
C TCP
C AP2/ERF
C WRKY
C LOB
C GRAS
C Copper-fist proteins fungal regulators
C Others
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AProkaryotic type
B Helix-turn-helix
C AraC family
D Ccar_04045 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D Ccar_05060 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator
D Ccar_03970 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D Ccar_11350 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D Ccar_16985 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D Ccar_24600 AraC family transcriptional regulator K13653 K13653; AraC family transcriptional regulator
D Ccar_17940 AraC family transcriptional regulator K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
C LysR family
C DeoR family
D Ccar_03835 DeoR faimly transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D Ccar_21785 stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D
D Ccar_23680 transcriptional regulator K23774 ccpN; DeoR family transcriptional regulator, catabolite repression regulator
C LacI family
D Ccar_12610 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Ccar_12645 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Ccar_18705 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Ccar_20305 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Ccar_21355 catabolite control protein A K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D Ccar_12080 KDG operon repressor K02525 kdgR; LacI family transcriptional regulator, kdg operon repressor
D Ccar_14420 LacI family transcriptional regulator K26609 exuR; LacI family transcriptional regulator, galacturonate utilization repressor
C GntR family
D Ccar_08375 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D Ccar_23285 GntR family transcriptional regulator K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor
D Ccar_05750 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Ccar_09105 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Ccar_11480 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D Ccar_11805 GntR family transcriptional regulator K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
C TetR/AcrR family
D Ccar_03770 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D Ccar_06290 TetR family transcriptional regulator K09017 rutR; TetR/AcrR family transcriptional regulator
D Ccar_05005 TetR family transcriptional regulator K18939 lmrA; TetR/AcrR family transcriptional regulator, lmrAB and yxaGH operons repressor
C Lrp/AsnC family
D Ccar_23040 transcriptional regulator K03718 asnC; Lrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA
D Ccar_05840 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Ccar_05950 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Ccar_06135 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
D Ccar_06280 transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
C LuxR family
D Ccar_02895 LuxR family transcriptional regulator K03556 malT; LuxR family transcriptional regulator, maltose regulon positive regulatory protein
C MarR family
D Ccar_14095 MarR family transcriptional regulator K18909 mepR; MarR family transcriptional regulator, repressor for mepA
D Ccar_05870 MarR family transcriptional regulator K23775 ohrR; MarR family transcriptional regulator, organic hydroperoxide resistance regulator
C MerR family
D Ccar_22445 MerR family transcriptional regulator K11923 cueR; MerR family transcriptional regulator, copper efflux regulator
D Ccar_04080 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D Ccar_12690 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
D Ccar_14025 transcriptional regulator K21745 adhR; MerR family transcriptional regulator, aldehyde-responsive regulator
C Fur family
D Ccar_00400 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Ccar_08495 Fur family transcriptional regulator K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D Ccar_18210 transcriptional regulator K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
C IclR family
D Ccar_14625 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
C CRP/FNR family
D Ccar_03620 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D Ccar_17635 Crp/Fnr family transcriptional regulator K21562 flp; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D Ccar_03940 cyclic nucleotide-binding protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D Ccar_05935 XRE family transcriptional regulator K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
D Ccar_12355 catabolite gene activator protein K16326 yeiL; CRP/FNR family transcriptional regulator, putaive post-exponential-phase nitrogen-starvation regulator
C Rrf2 family
D Ccar_00355 transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D Ccar_13230 Rrf2 family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
C ArsR family
D Ccar_11240 ArsR family transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D Ccar_11740 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
D Ccar_13780 ArsR family transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor
C XRE family
D Ccar_04675 DNA-binding protein K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization
C PadR family
D Ccar_08780 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D Ccar_19125 PadR family transcriptional regulator K26739 padR; PadR family transcriptional regulator, phenolic acid-responsive transcriptional regulator
D Ccar_04655 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Ccar_09870 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Ccar_12220 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Ccar_12405 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
D Ccar_14520 PadR family transcriptional regulator K10947 K10947; PadR family transcriptional regulator
C Other families
D Ccar_12860 Fur family transcriptional regulator K11924 mntR; DtxR family transcriptional regulator, manganese transport regulator
D Ccar_04160 CopY family transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Ccar_06190 beta-lactamase K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Ccar_13545 beta-lactamase K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor
D Ccar_12920 biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D Ccar_16775 hypothetical protein K15773 hipB; HTH-type transcriptional regulator / antitoxin HipB
D Ccar_24340 DNA-binding protein K22299 rghR; HTH-type transcriptional regulator, competence development regulator
D Ccar_05045 transcriptional regulator K23356 trmB; HTH-type transcriptional regulator, sugar sensing transcriptional regulator
D Ccar_20200 LacI family transcriptional regulator K09685 purR; HTH-type transcriptional regulator, purine operon repressor
D Ccar_04445 ATPase AAA K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Ccar_12730 Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Ccar_24830 ATPase AAA K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Ccar_24840 ATPase AAA K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Ccar_25835 ATPase AAA K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
D Ccar_01525 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D Ccar_04810 transcriptional regulator K02647 cdaR; carbohydrate diacid regulator
D Ccar_13695 transcriptional regulator K02019 modE; molybdate transport system regulatory protein
D Ccar_18650 REX family transcriptional regulator K01926 rex; redox-sensing transcriptional repressor
D Ccar_00825 GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor
D Ccar_00105 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D Ccar_11495 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D Ccar_16440 XRE family transcriptional regulator K07727 K07727; putative transcriptional regulator
D Ccar_00120 transcriptional regulator K07729 K07729; putative transcriptional regulator
D Ccar_10270 transcriptional regulator K07729 K07729; putative transcriptional regulator
D Ccar_16415 hypothetical protein K07729 K07729; putative transcriptional regulator
D Ccar_24620 XRE family transcriptional regulator K07729 K07729; putative transcriptional regulator
B Ribbon-helix-helix
C CopG family
C Other families
B Other transcription factors
C BglG family
D Ccar_06590 transcription antiterminator LicT K03488 licT; beta-glucoside operon transcriptional antiterminator
D Ccar_18040 transcription antiterminator BglG K03480 glcT; transcriptional antiterminator
C Others
D Ccar_08980 copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Ccar_11730 metal-sensitive transcriptional repressor K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Ccar_18885 copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D Ccar_13830 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Ccar_15740 hypothetical protein K09684 pucR; PucR family transcriptional regulator, purine catabolism regulatory protein
D Ccar_15150 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Ccar_21175 AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes
D Ccar_20150 stage V sporulation protein T K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T
D Ccar_20680 plasmid stablization protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Ccar_20690 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D Ccar_19965 transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D Ccar_17370 glycerol-3-phosphate responsive antiterminator GlpP K02443 glpP; glycerol uptake operon antiterminator
D Ccar_24860 antiterminator K02443 glpP; glycerol uptake operon antiterminator
D Ccar_25655 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D Ccar_25660 ArgR family transcriptional regulator K03402 argR; transcriptional regulator of arginine metabolism
D Ccar_23590 HrcA family transcriptional regulator K03705 hrcA; heat-inducible transcriptional repressor
D Ccar_02095 thiaminase K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D Ccar_20000 CtsR family transcriptional regulator K03708 ctsR; transcriptional regulator of stress and heat shock response
D Ccar_00040 ATPase AAA K03721 tyrR; transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transport
D Ccar_22200 Cro/Cl family transcriptional regulator K05311 cggR; central glycolytic genes regulator
D Ccar_22410 RNA polymerase sigma70 K05346 deoR; deoxyribonucleoside regulator
D Ccar_25465 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D Ccar_00485 NrdR family transcriptional regulator K07738 nrdR; transcriptional repressor NrdR
D Ccar_25355 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 21, 2025
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Classification taken and modified from TRANSFAC 7.0