+D GENES KO
#
KEGG Orthology (KO) - Corynebacterium confusum
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:ccou00010]
D CCONF_07955 glkA; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CCONF_03735 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CCONF_05210 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CCONF_04360 glpX; Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CCONF_10330 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CCONF_06320 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CCONF_04065 gap1; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CCONF_06330 gap2; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CCONF_06325 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CCONF_01460 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CCONF_04180 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CCONF_07575 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CCONF_10805 ppsA2; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CCONF_08240 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CCONF_08045 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_10285 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CCONF_04160 adh1; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_04745 adh2; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_10410 thcA; EPTC-inducible aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D CCONF_03375 galM; Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D CCONF_09490 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CCONF_06835 ppgK; Polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D CCONF_10710 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
C 00020 Citrate cycle (TCA cycle) [PATH:ccou00020]
D CCONF_03620 gltA2; Citrate synthase 1 K01647 CS; citrate synthase [EC:2.3.3.1]
D CCONF_06155 acn; Aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CCONF_02590 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CCONF_04715 odhA; 2-oxoglutarate dehydrogenase E1/E2 component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_09590 cat1; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D CCONF_01265 frdA; Fumarate reductase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CCONF_01270 frdB; Fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CCONF_01260 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CCONF_04355 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CCONF_09010 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CCONF_07255 mqo; Malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D CCONF_02730 cfiB; 2-oxoglutarate carboxylase small subunit K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D CCONF_10710 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D CCONF_08240 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CCONF_08045 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
C 00030 Pentose phosphate pathway [PATH:ccou00030]
D CCONF_03735 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CCONF_06300 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D CCONF_06310 pgl; 6-phosphogluconolactonase K01057 PGLS; 6-phosphogluconolactonase [EC:3.1.1.31]
D CCONF_05875 gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D CCONF_06380 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CCONF_06290 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CCONF_06295 tal; Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CCONF_09070 rpiB; Ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CCONF_01295 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4]
D CCONF_02915 rbsK; Ribokinase K00852 rbsK; ribokinase [EC:2.7.1.15]
D CCONF_09490 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CCONF_04100 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CCONF_02940 gntK; Thermoresistant gluconokinase K00851 idnK; gluconokinase [EC:2.7.1.12]
D CCONF_10330 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CCONF_04360 glpX; Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CCONF_05210 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
C 00040 Pentose and glucuronate interconversions [PATH:ccou00040]
D CCONF_08420 tuaD1; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CCONF_10525 tuaD2; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CCONF_03875 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CCONF_06380 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
C 00051 Fructose and mannose metabolism [PATH:ccou00051]
D CCONF_03160 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CCONF_03100 algC; Phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D CCONF_03080 hddC; D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CCONF_05210 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CCONF_04360 glpX; Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CCONF_06965 lacC; Tagatose-6-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
D CCONF_10330 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CCONF_06320 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CCONF_09070 rpiB; Ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CCONF_06970 fruA; PTS system fructose-specific EIIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D CCONF_03035 manP; PTS system mannose-specific EIIBCA component K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191]
C 00052 Galactose metabolism [PATH:ccou00052]
D CCONF_03375 galM; Aldose 1-epimerase K01785 galM; aldose 1-epimerase [EC:5.1.3.3]
D CCONF_03395 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CCONF_08180 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CCONF_03390 galT; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D CCONF_06895 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CCONF_08425 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CCONF_03875 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CCONF_09490 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CCONF_07955 glkA; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CCONF_10820 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CCONF_05210 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CCONF_04670 scrB; Sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
C 00053 Ascorbate and aldarate metabolism [PATH:ccou00053]
D CCONF_08420 tuaD1; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CCONF_10525 tuaD2; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CCONF_02955 ulaA; Ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
C 00500 Starch and sucrose metabolism [PATH:ccou00500]
D CCONF_04670 scrB; Sucrose-6-phosphate hydrolase K01193 INV; beta-fructofuranosidase [EC:3.2.1.26]
D CCONF_03875 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CCONF_04680 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
D CCONF_05085 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D CCONF_07570 glgP; Glycogen phosphorylase K00688 PYG; glycogen phosphorylase [EC:2.4.1.1]
D CCONF_02795 treS; Trehalose synthase/amylase TreS K05343 treS; maltose alpha-D-glucosyltransferase / alpha-amylase [EC:5.4.99.16 3.2.1.1]
D CCONF_08700 malQ; 4-alpha-glucanotransferase K00705 malQ; 4-alpha-glucanotransferase [EC:2.4.1.25]
D CCONF_05090 glgE; Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase K16147 glgE; starch synthase (maltosyl-transferring) [EC:2.4.99.16]
D CCONF_04675 glgA; Capsular glucan synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D CCONF_07665 glgX; Glycogen debranching enzyme K01214 ISA; isoamylase [EC:3.2.1.68]
D CCONF_09800 otsA; Trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D CCONF_09810 otsB; Trehalose-6-phosphate phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12]
D CCONF_09490 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CCONF_07955 glkA; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CCONF_03735 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:ccou00520]
D CCONF_10665 ybbD; putative lipoprotein YbbD precursor K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CCONF_09860 glcB; PTS system glucoside-specific EIICBA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CCONF_09855 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
D CCONF_09850 nagB; Glucosamine-6-phosphate deaminase K02564 nagB; glucosamine-6-phosphate deaminase [EC:3.5.99.6]
D CCONF_02335 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CCONF_02310 glmM; Phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CCONF_04105 glmU; Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CCONF_09535 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CCONF_01315 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CCONF_08545 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CCONF_08445 wbpA; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
D CCONF_07955 glkA; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CCONF_06835 ppgK; Polyphosphate glucokinase K00886 ppgK; polyphosphate glucokinase [EC:2.7.1.63]
D CCONF_09490 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CCONF_03875 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CCONF_08420 tuaD1; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CCONF_10525 tuaD2; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CCONF_04010 galE1; UDP-glucose 4-epimerase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
D CCONF_03395 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CCONF_08180 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CCONF_03390 galT; Galactose-1-phosphate uridylyltransferase K00965 galT; UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12]
D CCONF_06895 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CCONF_08425 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CCONF_10820 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CCONF_03735 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CCONF_03160 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CCONF_03100 algC; Phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D CCONF_03080 hddC; D-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase K00966 GMPP; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CCONF_04680 glgC; Glucose-1-phosphate adenylyltransferase K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
C 00620 Pyruvate metabolism [PATH:ccou00620]
D CCONF_08240 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CCONF_08045 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_09330 pflB2; Formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CCONF_04160 adh1; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_04745 adh2; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_10275 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CCONF_10280 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CCONF_07575 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CCONF_02740 accA1; Acetyl-/propionyl-coenzyme A carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_02870 accC; Biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_07515 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
D CCONF_10410 thcA; EPTC-inducible aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-]
D CCONF_09590 cat1; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D CCONF_10285 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CCONF_09770 poxB; Pyruvate dehydrogenase [ubiquinone] K00156 poxB; pyruvate dehydrogenase (quinone) [EC:1.2.5.1]
D CCONF_02960 putative FAD-linked oxidoreductase K18930 dld; D-lactate dehydrogenase
D CCONF_06595 putative metallo-hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CCONF_02730 cfiB; 2-oxoglutarate carboxylase small subunit K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D CCONF_09010 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CCONF_07255 mqo; Malate:quinone oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D CCONF_04355 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CCONF_10710 pckG; Phosphoenolpyruvate carboxykinase [GTP] K01596 E4.1.1.32; phosphoenolpyruvate carboxykinase (GTP) [EC:4.1.1.32]
D CCONF_10805 ppsA2; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CCONF_00950 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:ccou00630]
D CCONF_09010 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CCONF_03620 gltA2; Citrate synthase 1 K01647 CS; citrate synthase [EC:2.3.3.1]
D CCONF_06155 acn; Aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CCONF_02740 accA1; Acetyl-/propionyl-coenzyme A carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_02870 accC; Biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_02770 accD1; putative propionyl-CoA carboxylase beta chain 5 K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D CCONF_02775 accD2; putative propionyl-CoA carboxylase beta chain 5 K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D CCONF_02765 hypothetical protein K27095 accE5; acyl-CoA carboxylase epsilon subunit
D CCONF_00985 katA; Catalase K03781 katE; catalase [EC:1.11.1.6]
D CCONF_08085 glnA1; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08160 glnA2; putative glutamine synthetase 2 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08380 glnA3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08535 glnA4; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_04310 glyA1; Serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CCONF_08050 gcvP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D CCONF_08055 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_08060 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CCONF_07555 garK; Glycerate 2-kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CCONF_04715 odhA; 2-oxoglutarate dehydrogenase E1/E2 component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D CCONF_04485 fdhA; Formate dehydrogenase subunit alpha precursor K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CCONF_04490 fdnG; Formate dehydrogenase, nitrate-inducible, major subunit precursor K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CCONF_04495 fdnH; Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CCONF_05190 amiF; Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00640 Propanoate metabolism [PATH:ccou00640]
D CCONF_10275 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CCONF_10280 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_09330 pflB2; Formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CCONF_11190 acuI; putative acrylyl-CoA reductase AcuI K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-]
D CCONF_02740 accA1; Acetyl-/propionyl-coenzyme A carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_02870 accC; Biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_02770 accD1; putative propionyl-CoA carboxylase beta chain 5 K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D CCONF_02775 accD2; putative propionyl-CoA carboxylase beta chain 5 K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D CCONF_02765 hypothetical protein K27095 accE5; acyl-CoA carboxylase epsilon subunit
D CCONF_02725 prpC2; 2-methylcitrate synthase 2 K01659 prpC; 2-methylcitrate synthase [EC:2.3.3.5]
D CCONF_02715 prpD; 2-methylcitrate dehydratase K01720 prpD; 2-methylcitrate dehydratase [EC:4.2.1.79]
D CCONF_02720 prpB; Methylisocitrate lyase K03417 prpB; methylisocitrate lyase [EC:4.1.3.30]
D CCONF_10285 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
C 00650 Butanoate metabolism [PATH:ccou00650]
D CCONF_01665 paaH; 3-hydroxyadipyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CCONF_01265 frdA; Fumarate reductase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CCONF_01270 frdB; Fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CCONF_01260 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CCONF_08285 gabD1; Succinate-semialdehyde dehydrogenase [NADP(+)] 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CCONF_11275 gabD2; Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CCONF_09590 cat1; Succinyl-CoA:coenzyme A transferase K18118 aarC; succinyl-CoA:acetate CoA-transferase [EC:2.8.3.18]
D CCONF_09330 pflB2; Formate acetyltransferase 1 K00656 E2.3.1.54; formate C-acetyltransferase [EC:2.3.1.54]
D CCONF_05275 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CCONF_05280 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CCONF_00785 budC; Diacetyl reductase [(S)-acetoin forming] K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
D CCONF_02905 butA; Diacetyl reductase [(S)-acetoin forming] K03366 butA; meso-butanediol dehydrogenase / (S,S)-butanediol dehydrogenase / diacetyl reductase [EC:1.1.1.- 1.1.1.76 1.1.1.304]
C 00660 C5-Branched dibasic acid metabolism [PATH:ccou00660]
D CCONF_05275 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CCONF_05280 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CCONF_05405 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CCONF_05410 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CCONF_05310 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:ccou00562]
D CCONF_07600 impA; Inositol-1-monophosphatase ImpA K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D CCONF_11095 ino1; Inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D CCONF_06320 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:ccou00190]
D CCONF_05910 NADH dehydrogenase-like protein K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D CCONF_01265 frdA; Fumarate reductase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CCONF_01270 frdB; Fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CCONF_01260 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CCONF_07985 aioB; Arsenite oxidase subunit AioB precursor K03890 qcrA; quinol---cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CCONF_07980 qcrB; Menaquinol-cytochrome c reductase cytochrome b subunit K03891 qcrB; quinol---cytochrome-c reductase cytochrome b subunit [EC:7.1.1.8]
D CCONF_07990 qcrC; Menaquinol-cytochrome c reductase cytochrome c subunit K03889 qcrC; quinol---cytochrome-c reductase cytochrome c subunit [EC:7.1.1.8]
D CCONF_06285 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CCONF_08000 ctaF; Cytochrome c oxidase polypeptide 4 K27109 ctaF; cytochrome c oxidase subunit IV [EC:7.1.1.9]
D CCONF_07995 ctaE; Cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9]
D CCONF_09420 ctaD; Cytochrome c oxidase subunit 1 K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9]
D CCONF_08005 ctaC; Cytochrome c oxidase subunit 2 precursor K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9]
D CCONF_06275 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D CCONF_05040 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CCONF_05050 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CCONF_05045 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CCONF_05035 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CCONF_05055 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CCONF_05020 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CCONF_05030 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CCONF_05025 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CCONF_10085 ppa; Inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D CCONF_04070 Polyphosphate kinase 2 (PPK2) K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CCONF_10110 Polyphosphate kinase 2 (PPK2) K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:ccou00710]
D CCONF_06325 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CCONF_04065 gap1; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CCONF_06330 gap2; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CCONF_10330 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CCONF_04360 glpX; Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CCONF_06290 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CCONF_09070 rpiB; Ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CCONF_06320 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CCONF_06380 rpe; Ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CCONF_06295 tal; Transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CCONF_09010 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:ccou00720]
D CCONF_10805 ppsA2; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CCONF_02730 cfiB; 2-oxoglutarate carboxylase small subunit K01958 PC; pyruvate carboxylase [EC:6.4.1.1]
D CCONF_09010 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CCONF_04355 fumC; Fumarate hydratase class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CCONF_01265 frdA; Fumarate reductase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]
D CCONF_01270 frdB; Fumarate reductase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]
D CCONF_01260 Succinate dehydrogenase/Fumarate reductase transmembrane subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit
D CCONF_02590 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CCONF_06155 acn; Aconitate hydratase K01681 ACO; aconitate hydratase [EC:4.2.1.3]
D CCONF_06045 fhs; Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D CCONF_02530 folD; Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CCONF_00130 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
D CCONF_10280 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CCONF_10275 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:ccou00680]
D CCONF_04485 fdhA; Formate dehydrogenase subunit alpha precursor K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CCONF_04490 fdnG; Formate dehydrogenase, nitrate-inducible, major subunit precursor K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CCONF_04495 fdnH; Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CCONF_04310 glyA1; Serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CCONF_04180 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CCONF_09010 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CCONF_10330 fba; Fructose-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CCONF_04360 glpX; Fructose-1,6-bisphosphatase class 2 K02446 glpX; fructose-1,6-bisphosphatase II [EC:3.1.3.11]
D CCONF_05210 pfkA; 6-phosphofructokinase K21071 pfk; ATP-dependent phosphofructokinase / diphosphate-dependent phosphofructokinase [EC:2.7.1.11 2.7.1.90]
D CCONF_10275 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CCONF_10280 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CCONF_10805 ppsA2; Phosphoenolpyruvate synthase K01007 pps; pyruvate, water dikinase [EC:2.7.9.2]
D CCONF_01460 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CCONF_05305 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CCONF_03615 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CCONF_09415 serB3; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:ccou00910]
D CCONF_05190 amiF; Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
D CCONF_04955 narK; Nitrate/nitrite transporter NarK K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D CCONF_04950 narG; Nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_04945 narY; Respiratory nitrate reductase 2 beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_04935 narX2; Nitrate reductase-like protein NarX K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_04920 aniA; Copper-containing nitrite reductase precursor K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1]
D CCONF_02555 norB; Nitric oxide reductase subunit B K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5]
D CCONF_04060 Nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D CCONF_07550 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CCONF_08085 glnA1; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08160 glnA2; putative glutamine synthetase 2 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08380 glnA3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08535 glnA4; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_09895 cynT; Carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:ccou00920]
D CCONF_06565 ssuE; FMN reductase (NADPH) K00299 ssuE; FMN reductase [EC:1.5.1.38]
D CCONF_10470 cysNC; Bifunctional enzyme CysN/CysC K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CCONF_10475 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CCONF_03715 cysQ; 3'-phosphoadenosine 5'-phosphate phosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CCONF_07190 nrnA; Bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
D CCONF_10480 cysH; Phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]
D CCONF_03120 sir2; Sulfite reductase [ferredoxin] K00392 sir; sulfite reductase (ferredoxin) [EC:1.8.7.1]
D CCONF_10355 sseA2; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CCONF_02745 sseA1; Putative thiosulfate sulfurtransferase SseA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CCONF_09550 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CCONF_09545 cysK1; O-acetylserine sulfhydrylase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CCONF_02540 metX; Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D CCONF_09135 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:ccou00061]
D CCONF_02740 accA1; Acetyl-/propionyl-coenzyme A carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_02870 accC; Biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_08250 acpM; Meromycolate extension acyl carrier protein K02078 acpP; acyl carrier protein
D CCONF_09300 kasB; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D CCONF_01335 Phenolphthiocerol synthesis polyketide synthase type I Pks15/1 K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D CCONF_08695 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01445 fadD1; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01450 fadD2; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation [PATH:ccou00071]
D CCONF_08695 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01445 fadD1; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01450 fadD2; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_04160 adh1; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_04745 adh2; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00073 Cutin, suberine and wax biosynthesis
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:ccou00561]
D CCONF_07555 garK; Glycerate 2-kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CCONF_10835 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D CCONF_05690 yutF; putative hydrolase YutF K06117 E3.1.3.21; glycerol-1-phosphatase [EC:3.1.3.21]
D CCONF_07950 plsC1; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CCONF_10775 fbpC; Diacylglycerol acyltransferase/mycolyltransferase Ag85C precursor K18851 fbp; diacylglycerol O-acyltransferase / trehalose O-mycolyltransferase [EC:2.3.1.20 2.3.1.122]
D CCONF_00465 estB1; Extracellular esterase EstB precursor K01046 lip; triacylglycerol lipase [EC:3.1.1.3]
D CCONF_04010 galE1; UDP-glucose 4-epimerase K06118 SQD1; UDP-sulfoquinovose synthase [EC:3.13.1.1]
C 00564 Glycerophospholipid metabolism [PATH:ccou00564]
D CCONF_05425 gpsA; Glycerol-3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CCONF_07950 plsC1; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CCONF_10900 glpQ1; putative glycerophosphoryl diester phosphodiesterase 1 K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
D CCONF_07335 cdsA; Phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CCONF_07090 pgsA2; Putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase 2 K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CCONF_10215 cls; Cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-]
C 00565 Ether lipid metabolism
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
C 00591 Linoleic acid metabolism
C 00592 alpha-Linolenic acid metabolism
C 01040 Biosynthesis of unsaturated fatty acids
D CCONF_06675 tesB; Acyl-CoA thioesterase 2 K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:ccou00230]
D CCONF_09490 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CCONF_04100 prs; Ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CCONF_09665 purF; Amidophosphoribosyltransferase precursor K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CCONF_09750 purD; Phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CCONF_03770 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CCONF_10310 purT; Phosphoribosylglycinamide formyltransferase 2 K08289 purT; phosphoribosylglycinamide formyltransferase 2 [EC:6.3.1.21]
D CCONF_09695 purL; Phosphoribosylformylglycinamidine synthase 2 K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D CCONF_09705 phosphoribosylformylglycinamidine synthase subunit PurS K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D CCONF_09700 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CCONF_09660 purM; Phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CCONF_02830 purK; N5-carboxyaminoimidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]
D CCONF_02835 purE; N5-carboxyaminoimidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CCONF_09725 purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CCONF_09730 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CCONF_03775 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CCONF_06630 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CCONF_06620 yhcR; Endonuclease YhcR precursor K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D CCONF_08255 nagD; Ribonucleotide monophosphatase NagD K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D CCONF_07820 yfiH; Laccase domain protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CCONF_06180 rihA1; Pyrimidine-specific ribonucleoside hydrolase RihA K01239 E3.2.2.1; purine nucleosidase [EC:3.2.2.1]
D CCONF_08310 rihA3; Pyrimidine-specific ribonucleoside hydrolase RihA K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D CCONF_02420 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CCONF_02425 putative oxidoreductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CCONF_08985 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CCONF_09355 Non-canonical purine NTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CCONF_02435 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CCONF_06420 gmk; Guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CCONF_09435 nrdE2; Ribonucleoside-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CCONF_02230 nrdE1; Ribonucleoside-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CCONF_09425 nrdF2; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_09745 nrdF3; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_02235 nrdF1; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_01865 nrdD; Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CCONF_08570 dgt; Deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1]
D CCONF_06625 relA; Bifunctional (p)ppGpp synthase/hydrolase relA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CCONF_04240 gppA; Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CCONF_01480 ppx; Exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CCONF_01155 cyaB; Adenylate cyclase 2 K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1]
D CCONF_10315 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CCONF_02665 adenosine deaminase K01488 add; adenosine deaminase [EC:3.5.4.4]
D CCONF_00470 amn; AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4]
D CCONF_02115 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CCONF_06710 AP-4-A phosphorylase K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D CCONF_10470 cysNC; Bifunctional enzyme CysN/CysC K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CCONF_10475 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:ccou00240]
D CCONF_06435 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CCONF_06440 carA1; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CCONF_06450 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CCONF_06445 pyrC; Dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CCONF_06095 pyrD; Dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D CCONF_10345 pyrE; Orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CCONF_06430 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CCONF_07345 pyrH; Uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CCONF_08985 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CCONF_02760 maf; Septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CCONF_05760 cmk; Cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25]
D CCONF_06620 yhcR; Endonuclease YhcR precursor K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D CCONF_08255 nagD; Ribonucleotide monophosphatase NagD K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D CCONF_08310 rihA3; Pyrimidine-specific ribonucleoside hydrolase RihA K25589 inuH; inosine/uridine nucleosidase [EC:3.2.2.2 3.2.2.3]
D CCONF_02690 upp; Uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D CCONF_06455 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CCONF_01865 nrdD; Anaerobic ribonucleoside-triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CCONF_10530 dcd; Deoxycytidine triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D CCONF_09435 nrdE2; Ribonucleoside-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CCONF_02230 nrdE1; Ribonucleoside-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CCONF_09425 nrdF2; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_09745 nrdF3; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_02235 nrdF1; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_03175 tmk; Thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CCONF_06820 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CCONF_03710 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CCONF_07125 thyX; Thymidylate synthase ThyX K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:ccou00250]
D CCONF_07770 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CCONF_08010 asnB; Putative asparagine synthetase [glutamine-hydrolyzing] K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CCONF_10515 alaA; Glutamate-pyruvate aminotransferase AlaA K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CCONF_06055 aspA; Aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D CCONF_05640 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CCONF_05645 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CCONF_10315 purA; Adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CCONF_09730 purB; Adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CCONF_06450 pyrB; Aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CCONF_08285 gabD1; Succinate-semialdehyde dehydrogenase [NADP(+)] 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CCONF_11275 gabD2; Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CCONF_07550 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CCONF_10455 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CCONF_08085 glnA1; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08160 glnA2; putative glutamine synthetase 2 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08380 glnA3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08535 glnA4; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_06435 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CCONF_06440 carA1; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CCONF_09700 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CCONF_02335 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CCONF_09665 purF; Amidophosphoribosyltransferase precursor K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:ccou00260]
D CCONF_00965 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CCONF_00970 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CCONF_04885 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CCONF_04890 thrB; Homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CCONF_08125 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CCONF_04310 glyA1; Serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CCONF_07555 garK; Glycerate 2-kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CCONF_01460 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CCONF_05305 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CCONF_03615 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CCONF_09415 serB3; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D CCONF_08050 gcvP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D CCONF_08055 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_08060 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
D CCONF_00575 betA; Oxygen-dependent choline dehydrogenase K00108 betA; choline dehydrogenase [EC:1.1.99.1]
D CCONF_00565 gbsA; Betaine aldehyde dehydrogenase K00130 betB; betaine-aldehyde dehydrogenase [EC:1.2.1.8]
D CCONF_04130 sdaA; L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CCONF_06570 sdaB; L-serine dehydratase 2 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CCONF_02380 tdcG; L-serine dehydratase TdcG K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CCONF_07700 ilvA1; L-threonine dehydratase biosynthetic IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CCONF_10295 ilvA2; L-threonine dehydratase biosynthetic IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CCONF_11310 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CCONF_11305 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:ccou00270]
D CCONF_09550 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CCONF_09545 cysK1; O-acetylserine sulfhydrylase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CCONF_08735 patB; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CCONF_07730 xecA1; 2-hydroxypropyl-CoM lyase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CCONF_00135 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CCONF_06405 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CCONF_10465 mtnN; Aminodeoxyfutalosine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9]
D CCONF_07820 yfiH; Laccase domain protein YfiH K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CCONF_01320 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CCONF_00965 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CCONF_00970 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CCONF_04885 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CCONF_02540 metX; Homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D CCONF_09135 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D CCONF_02545 metZ; O-succinylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D CCONF_08030 ilvE1; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CCONF_10355 sseA2; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CCONF_02745 sseA1; Putative thiosulfate sulfurtransferase SseA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CCONF_10285 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CCONF_09010 mdh; Malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CCONF_04130 sdaA; L-serine dehydratase 1 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CCONF_06570 sdaB; L-serine dehydratase 2 K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CCONF_02380 tdcG; L-serine dehydratase TdcG K01752 E4.3.1.17; L-serine dehydratase [EC:4.3.1.17]
D CCONF_05305 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CCONF_03615 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:ccou00280]
D CCONF_08030 ilvE1; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_02740 accA1; Acetyl-/propionyl-coenzyme A carboxylase alpha chain K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_02870 accC; Biotin carboxylase K11263 bccA; acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein [EC:6.4.1.2 6.4.1.3 6.3.4.14]
D CCONF_02770 accD1; putative propionyl-CoA carboxylase beta chain 5 K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D CCONF_02775 accD2; putative propionyl-CoA carboxylase beta chain 5 K27094 accD5; propionyl-/long chain acyl-CoA carboxylase carboxyl transferase subunit beta 5 [EC:6.4.1.3 6.4.1.- 2.1.3.15]
D CCONF_02765 hypothetical protein K27095 accE5; acyl-CoA carboxylase epsilon subunit
D CCONF_01555 mmsB; 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:ccou00290]
D CCONF_07700 ilvA1; L-threonine dehydratase biosynthetic IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CCONF_10295 ilvA2; L-threonine dehydratase biosynthetic IlvA K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CCONF_05405 leuC; 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CCONF_05410 leuD; 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CCONF_05310 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D CCONF_05275 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CCONF_05280 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CCONF_05285 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CCONF_05265 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CCONF_08030 ilvE1; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CCONF_10515 alaA; Glutamate-pyruvate aminotransferase AlaA K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CCONF_00950 leuA; 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:ccou00300]
D CCONF_04885 hom; Homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CCONF_00965 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CCONF_00970 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CCONF_07120 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CCONF_07130 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CCONF_04625 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CCONF_05625 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CCONF_04635 dapE2; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CCONF_07010 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CCONF_04880 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CCONF_07865 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CCONF_07860 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:ccou00310]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_08285 gabD1; Succinate-semialdehyde dehydrogenase [NADP(+)] 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CCONF_11275 gabD2; Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00220 Arginine biosynthesis [PATH:ccou00220]
D CCONF_05630 argF; Ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CCONF_05640 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CCONF_05645 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CCONF_09700 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CCONF_08085 glnA1; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08160 glnA2; putative glutamine synthetase 2 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08380 glnA3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08535 glnA4; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_06435 carB; Carbamoyl-phosphate synthase large chain K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CCONF_06440 carA1; Carbamoyl-phosphate synthase small chain K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CCONF_07550 gdhA; NADP-specific glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CCONF_10515 alaA; Glutamate-pyruvate aminotransferase AlaA K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CCONF_05615 argJ; Arginine biosynthesis bifunctional protein ArgJ K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D CCONF_10205 hypothetical protein K22476 K22476; N-acetylglutamate synthase [EC:2.3.1.1]
D CCONF_05620 argB; Acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D CCONF_05610 argC; N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D CCONF_05625 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:ccou00330]
D CCONF_01490 proC; Pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CCONF_10455 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CCONF_05655 rapL; L-lysine cyclodeaminase K01750 E4.3.1.12; ornithine cyclodeaminase [EC:4.3.1.12]
D CCONF_08925 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CCONF_08910 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00340 Histidine metabolism [PATH:ccou00340]
D CCONF_06060 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CCONF_06065 hisE; Phosphoribosyl-ATP pyrophosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31]
D CCONF_07605 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D CCONF_07610 hisH; Imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CCONF_07595 hisF; Imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CCONF_07625 hisB; Imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D CCONF_07630 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_00745 pat; Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_03440 hisN; Histidinol-phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15]
D CCONF_07635 hisD; Histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D CCONF_04765 hutH; Histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
D CCONF_04770 hutU; Urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49]
D CCONF_04775 hutI; Imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7]
D CCONF_04755 hutG; Formimidoylglutamase K01479 hutG; formiminoglutamase [EC:3.5.3.8]
C 00350 Tyrosine metabolism [PATH:ccou00350]
D CCONF_07630 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_00745 pat; Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_04160 adh1; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_04745 adh2; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_08285 gabD1; Succinate-semialdehyde dehydrogenase [NADP(+)] 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CCONF_11275 gabD2; Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CCONF_04075 Ureidoglycolate lyase K16164 K16164; acylpyruvate hydrolase [EC:3.7.1.5]
C 00360 Phenylalanine metabolism [PATH:ccou00360]
D CCONF_01665 paaH; 3-hydroxyadipyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
D CCONF_07630 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_00745 pat; Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_03025 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00380 Tryptophan metabolism [PATH:ccou00380]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_00985 katA; Catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:ccou00400]
D CCONF_07930 aroG; Phospho-2-dehydro-3-deoxyheptonate aldolase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CCONF_06495 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CCONF_06490 aroQ; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CCONF_06500 aroK; Shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CCONF_03240 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CCONF_06505 aroC; Chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CCONF_11285 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CCONF_11290 trpG; Anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D CCONF_11295 trpGD; Bifunctional protein TrpGD K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18]
D CCONF_07605 hisA; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase K24017 priA; phosphoribosyl isomerase A [EC:5.3.1.16 5.3.1.24]
D CCONF_07585 trpC1; Indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D CCONF_11300 trpC2; Tryptophan biosynthesis protein TrpCF K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D CCONF_11310 trpA; Tryptophan synthase alpha chain K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CCONF_11305 trpB; Tryptophan synthase beta chain K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D CCONF_03745 Intracellular chorismate mutase K04093 pheA1; chorismate mutase [EC:5.4.99.5]
D CCONF_00795 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CCONF_10875 pheA; Prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51]
D CCONF_07630 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_00745 pat; Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism
D CCONF_10030 panC; Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:ccou00430]
D CCONF_10280 pta; Phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CCONF_10275 ackA; Acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:ccou00450]
D CCONF_09135 metB; Cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48]
D CCONF_08735 patB; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CCONF_07730 xecA1; 2-hydroxypropyl-CoM lyase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CCONF_00135 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CCONF_06235 csd; putative cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]
D CCONF_11395 trxB; Thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CCONF_10470 cysNC; Bifunctional enzyme CysN/CysC K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CCONF_10475 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CCONF_04515 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CCONF_04525 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CCONF_03935 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:ccou00460]
D CCONF_07770 ansA; L-asparaginase K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CCONF_04310 glyA1; Serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CCONF_05190 amiF; Formamidase K01455 E3.5.1.49; formamidase [EC:3.5.1.49]
C 00470 D-Amino acid metabolism [PATH:ccou00470]
D CCONF_02340 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CCONF_05430 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CCONF_09700 purQ; Phosphoribosylformylglycinamidine synthase 1 K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CCONF_09370 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CCONF_07850 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CCONF_07010 dapF; Diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CCONF_04880 lysA; Diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CCONF_03025 dadA; D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1]
C 00480 Glutathione metabolism [PATH:ccou00480]
D CCONF_02880 LamB/YcsF family protein K07160 pxpA; 5-oxoprolinase (ATP-hydrolysing) subunit A [EC:3.5.2.9]
D CCONF_10185 ybdK; Carboxylate-amine ligase YbdK K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-]
D CCONF_08035 pepA; Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CCONF_09080 pepN2; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D CCONF_11385 pepN3; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D CCONF_02590 icd; Isocitrate dehydrogenase [NADP] K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CCONF_05875 gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating K00033 PGD; 6-phosphogluconate dehydrogenase [EC:1.1.1.44 1.1.1.343]
D CCONF_06300 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis [PATH:ccou00515]
D CCONF_03915 pmt; putative dolichyl-phosphate-mannose--protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00514 Other types of O-glycan biosynthesis [PATH:ccou00514]
D CCONF_03915 pmt; putative dolichyl-phosphate-mannose--protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis
C 00542 O-Antigen repeat unit biosynthesis [PATH:ccou00542]
D CCONF_05010 wecA; Decaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:ccou00541]
D CCONF_03875 gtaB; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CCONF_06895 galE2; UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CCONF_08425 UDP-glucose 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CCONF_10820 glf; UDP-galactopyranose mutase K01854 glf; UDP-galactopyranose mutase [EC:5.4.99.9]
D CCONF_08420 tuaD1; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CCONF_10525 tuaD2; UDP-glucose 6-dehydrogenase TuaD K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CCONF_01205 rmlA1; Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CCONF_01215 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CCONF_01210 rfbC; putative dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
D CCONF_03160 manA; Mannose-6-phosphate isomerase K01809 manA; mannose-6-phosphate isomerase [EC:5.3.1.8]
D CCONF_03100 algC; Phosphomannomutase/phosphoglucomutase K01840 manB; phosphomannomutase [EC:5.4.2.8]
D CCONF_04105 glmU; Bifunctional protein GlmU K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CCONF_08545 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CCONF_08445 wbpA; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 00550 Peptidoglycan biosynthesis [PATH:ccou00550]
D CCONF_09535 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CCONF_01315 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CCONF_07835 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CCONF_07850 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CCONF_07865 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CCONF_05430 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CCONF_07860 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CCONF_08615 Trans,polycis-polyprenyl diphosphate synthase ((2Z,6E)-farnesyl diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CCONF_06085 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CCONF_07855 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CCONF_07840 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CCONF_07870 pbpB; Penicillin-binding protein PbpB K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CCONF_00170 pbpA; Penicillin-binding protein A K05364 pbpA; penicillin-binding protein A
D CCONF_02660 dacF; D-alanyl-D-alanine carboxypeptidase DacF precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CCONF_10080 dacB; D-alanyl-D-alanine carboxypeptidase DacB precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D CCONF_00940 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase K23393 murT; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
D CCONF_00935 cobyric acid synthase K07009 gatD; lipid II isoglutaminyl synthase (glutamine-hydrolysing) [EC:6.3.5.13]
C 00552 Teichoic acid biosynthesis [PATH:ccou00552]
D CCONF_06085 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CCONF_05010 wecA; Decaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:ccou00543]
D CCONF_05010 wecA; Decaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CCONF_09550 cysE; Serine acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:ccou00730]
D CCONF_05895 thiD; Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase K14153 thiDE; hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase [EC:2.7.1.49 2.7.4.7 2.5.1.3]
D CCONF_05120 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CCONF_06800 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CCONF_05905 thiM; Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CCONF_05900 thiE; Thiamine-phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CCONF_05440 thiL; Thiamine-monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D CCONF_03235 rsgA; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CCONF_03030 phoB; Alkaline phosphatase 3 precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CCONF_02115 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:ccou00740]
D CCONF_06365 ribBA; Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CCONF_06375 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CCONF_06360 ribH; 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CCONF_06370 ribE; Riboflavin synthase K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CCONF_07165 ribF; Riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CCONF_06565 ssuE; FMN reductase (NADPH) K00299 ssuE; FMN reductase [EC:1.5.1.38]
D CCONF_05905 thiM; Hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
C 00750 Vitamin B6 metabolism [PATH:ccou00750]
D CCONF_08630 pdxY; Pyridoxamine kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35]
D CCONF_03615 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CCONF_08125 thrC; Threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CCONF_02575 pdxS; Pyridoxal biosynthesis lyase PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
D CCONF_02580 pdxT; Glutamine amidotransferase subunit PdxT K08681 pdxT; pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:ccou00760]
D CCONF_09400 pncB1; Nicotinate phosphoribosyltransferase pncB1 K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D CCONF_06620 yhcR; Endonuclease YhcR precursor K01081 E3.1.3.5; 5'-nucleotidase [EC:3.1.3.5]
D CCONF_08255 nagD; Ribonucleotide monophosphatase NagD K02566 nagD; 5'-nucleotidase [EC:3.1.3.5]
D CCONF_08905 nadD; Nicotinate-nucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CCONF_03310 nudC; NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22]
D CCONF_09460 nadE; NH(3)-dependent NAD(+) synthetase K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D CCONF_07085 cinA; Putative competence-damage inducible protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D CCONF_09270 nicotinamidase/pyrazinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-]
D CCONF_05705 ppnK; Inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D CCONF_08285 gabD1; Succinate-semialdehyde dehydrogenase [NADP(+)] 1 K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CCONF_11275 gabD2; Succinate-semialdehyde dehydrogenase [NADP(+)] GabD K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:ccou00770]
D CCONF_05275 ilvB; Acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CCONF_05280 ilvH; Acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CCONF_05285 ilvC; Ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CCONF_05265 ilvD; Dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CCONF_10030 panC; Pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CCONF_04305 coaA; Pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33]
D CCONF_06410 coaBC; Coenzyme A biosynthesis bifunctional protein CoaBC K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CCONF_05470 coaD; Phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CCONF_05535 coaE; Dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CCONF_09295 acpS; Holo-[acyl-carrier-protein] synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CCONF_08030 ilvE1; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00780 Biotin metabolism [PATH:ccou00780]
D CCONF_00455 bioB; Biotin synthase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CCONF_02820 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism [PATH:ccou00785]
D CCONF_08065 lipB; Octanoyltransferase K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181]
D CCONF_08070 lipA; Lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_08240 aceE; Pyruvate dehydrogenase E1 component K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1]
D CCONF_08045 aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12]
D CCONF_04715 odhA; 2-oxoglutarate dehydrogenase E1/E2 component K01616 kgd; multifunctional 2-oxoglutarate metabolism enzyme [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
D CCONF_08050 gcvP; Glycine dehydrogenase (decarboxylating) K00281 GLDC; glycine cleavage system P protein (glycine dehydrogenase) [EC:1.4.4.2]
D CCONF_08055 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CCONF_08060 gcvH; Glycine cleavage system H protein K02437 gcvH; glycine cleavage system H protein
C 00790 Folate biosynthesis [PATH:ccou00790]
D CCONF_10065 folE; GTP cyclohydrolase 1 K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CCONF_03030 phoB; Alkaline phosphatase 3 precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CCONF_11240 pld; Phospholipase D precursor K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D CCONF_10055 folB; putative dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D CCONF_10050 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D CCONF_04645 folP1; Inactive dihydropteroate synthase 2 K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CCONF_10060 folP2; Dihydropteroate synthase 1 K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CCONF_03705 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D CCONF_09000 fgs; Folylpolyglutamate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CCONF_06365 ribBA; Riboflavin biosynthesis protein RibBA K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CCONF_09645 ilvE2; Branched-chain-amino-acid aminotransferase K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D CCONF_04980 moaA; Cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CCONF_04970 moaC2; Cyclic pyranopterin monophosphate synthase accessory protein 2 K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CCONF_00720 moaE; Molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CCONF_03880 moeA2; Molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CCONF_04975 moeA3; Molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CCONF_00730 moeA1; Molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
C 00670 One carbon pool by folate [PATH:ccou00670]
D CCONF_03705 folA; Dihydrofolate reductase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3]
D CCONF_06045 fhs; Formate--tetrahydrofolate ligase K01938 fhs; formate--tetrahydrofolate ligase [EC:6.3.4.3]
D CCONF_02530 folD; Bifunctional protein FolD protein K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CCONF_04310 glyA1; Serine hydroxymethyltransferase 1 K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CCONF_03770 purN; Phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CCONF_03775 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CCONF_06390 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CCONF_00310 arnA; Bifunctional polymyxin resistance protein ArnA K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CCONF_08055 gcvT; Aminomethyltransferase K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10]
D CCONF_03710 thyA; Thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45]
D CCONF_07125 thyX; Thymidylate synthase ThyX K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CCONF_00130 metF; 5,10-methylenetetrahydrofolate reductase K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:ccou00860]
D CCONF_05375 gltX2; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_00840 gltX1; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_01515 hemA; Glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D CCONF_01570 hemL2; Glutamate-1-semialdehyde 2,1-aminomutase 2 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CCONF_01530 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CCONF_01520 hemC; Porphobilinogen deaminase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CCONF_01545 hemE; Uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CCONF_01550 hemY; Protoporphyrinogen oxidase K00231 PPOX; protoporphyrinogen/coproporphyrinogen III oxidase [EC:1.3.3.4 1.3.3.15]
D CCONF_06140 hemH; Ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D CCONF_06785 putative heme peroxidase K00435 hemQ; hydrogen peroxide-dependent heme synthase [EC:1.3.98.5]
D CCONF_01525 cysG1; Siroheme synthase K13542 cobA-hemD; uroporphyrinogen III methyltransferase / synthase [EC:2.1.1.107 4.2.1.75]
D CCONF_03150 cysG2; Siroheme synthase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D CCONF_06285 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CCONF_06275 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D CCONF_05965 hypothetical protein K02229 cobG; precorrin-3B synthase [EC:1.14.13.83]
D CCONF_08025 cobU; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
D CCONF_08195 pspA2; Phosphoserine phosphatase 1 K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D CCONF_01435 hmuO; Heme oxygenase K21480 HO; heme oxygenase (biliverdin-producing, ferredoxin) [EC:1.14.15.20]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:ccou00130]
D CCONF_01730 ubiE; Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D CCONF_05335 dhbC; Isochorismate synthase DhbC K02361 entC; isochorismate synthase [EC:5.4.4.2]
D CCONF_01715 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase K02551 menD; 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:2.2.1.9]
D CCONF_01700 ykfB; L-Ala-D/L-Glu epimerase K02549 menC; o-succinylbenzoate synthase [EC:4.2.1.113]
D CCONF_01655 menE; 2-succinylbenzoate--CoA ligase K01911 menE; o-succinylbenzoate---CoA ligase [EC:6.2.1.26]
D CCONF_01690 menB; 1,4-Dihydroxy-2-naphthoyl-CoA synthase K01661 menB; naphthoate synthase [EC:4.1.3.36]
D CCONF_01620 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:ccou00900]
D CCONF_06800 dxs; 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CCONF_07305 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CCONF_09870 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase K00991 ispD; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
D CCONF_03960 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CCONF_09865 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K01770 ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
D CCONF_07295 ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CCONF_04385 ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D CCONF_08720 idi; Isopentenyl-diphosphate Delta-isomerase K01823 idi; isopentenyl-diphosphate Delta-isomerase [EC:5.3.3.2]
D CCONF_07905 (2E,6E)-farnesyl diphosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CCONF_04300 uppS; (2Z,6E)-farnesyl diphosphate synthase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D CCONF_08615 Trans,polycis-polyprenyl diphosphate synthase ((2Z,6E)-farnesyl diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CCONF_06290 tkt; Transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:ccou00523]
D CCONF_01205 rmlA1; Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CCONF_01215 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CCONF_01210 rfbC; putative dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
D CCONF_05335 dhbC; Isochorismate synthase DhbC K02361 entC; isochorismate synthase [EC:5.4.4.2]
C 01055 Biosynthesis of vancomycin group antibiotics
D CCONF_01215 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:ccou00332]
D CCONF_08925 proB; Glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CCONF_08910 proA; Gamma-glutamyl phosphate reductase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:ccou00261]
D CCONF_00275 MbtH-like protein K05375 mbtH; MbtH protein
D CCONF_10470 cysNC; Bifunctional enzyme CysN/CysC K00956 cysN; sulfate adenylyltransferase subunit 1 [EC:2.7.7.4]
D CCONF_10475 cysD; Sulfate adenylyltransferase subunit 2 K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4]
D CCONF_00965 lysC; Aspartokinase K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CCONF_00970 asd; Aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CCONF_07120 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CCONF_07130 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:ccou00521]
D CCONF_07955 glkA; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
D CCONF_09490 pgm; Phosphoglucomutase K01835 pgm; phosphoglucomutase [EC:5.4.2.2]
D CCONF_11095 ino1; Inositol-3-phosphate synthase K01858 INO1; myo-inositol-1-phosphate synthase [EC:5.5.1.4]
D CCONF_07600 impA; Inositol-1-monophosphatase ImpA K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D CCONF_01205 rmlA1; Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CCONF_01215 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CCONF_01210 rfbC; putative dTDP-4-dehydrorhamnose 3,5-epimerase K23987 rfbCD; dTDP-4-dehydrorhamnose 3,5-epimerase/reductase [EC:5.1.3.13 1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
D CCONF_07955 glkA; Glucokinase K25026 glk; glucokinase [EC:2.7.1.2]
C 00525 Acarbose and validamycin biosynthesis [PATH:ccou00525]
D CCONF_01205 rmlA1; Glucose-1-phosphate thymidylyltransferase 1 K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CCONF_01215 rmlB; dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:ccou00401]
D CCONF_00795 prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CCONF_07630 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_00745 pat; Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CCONF_11285 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CCONF_11290 trpG; Anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CCONF_08250 acpM; Meromycolate extension acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites
D CCONF_06405 metK; S-adenosylmethionine synthase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation [PATH:ccou00362]
D CCONF_02975 catC; Muconolactone Delta-isomerase K03464 catC; muconolactone D-isomerase [EC:5.3.3.4]
D CCONF_03530 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2]
D CCONF_01665 paaH; 3-hydroxyadipyl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
C 00627 Aminobenzoate degradation
D CCONF_07515 acyP; Acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation [PATH:ccou00625]
D CCONF_04160 adh1; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_04745 adh2; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
C 00626 Naphthalene degradation [PATH:ccou00626]
D CCONF_04160 adh1; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
D CCONF_04745 adh2; Alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1]
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:ccou03020]
D CCONF_01810 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CCONF_01815 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CCONF_02150 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CCONF_06415 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
D CCONF_03545 Type III restriction enzyme, res subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:ccou03010]
D CCONF_05525 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CCONF_07355 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CCONF_01960 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CCONF_02145 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CCONF_00355 rpsE1; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CCONF_02070 rpsE2; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CCONF_11120 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CCONF_01875 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CCONF_00340 rpsH1; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CCONF_02055 rpsH2; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CCONF_02295 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CCONF_01925 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CCONF_02140 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CCONF_01870 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CCONF_02135 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CCONF_03810 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CCONF_07155 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CCONF_07445 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CCONF_01975 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CCONF_03805 rpsR1; 30S ribosomal protein S18 1 K02963 RP-S18; small subunit ribosomal protein S18
D CCONF_01950 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CCONF_08850 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CCONF_01785 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CCONF_01945 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CCONF_01930 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CCONF_01935 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CCONF_01990 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CCONF_00345 rplF1; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CCONF_02060 rplF2; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CCONF_01800 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CCONF_11130 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CCONF_01795 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CCONF_01780 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CCONF_02290 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CCONF_01980 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CCONF_02080 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CCONF_01965 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CCONF_02155 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CCONF_00350 rplR1; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CCONF_02065 rplR2; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CCONF_07405 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CCONF_05590 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CCONF_08965 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CCONF_01955 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CCONF_01940 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CCONF_01985 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CCONF_04085 ctc; General stress protein CTC K02897 RP-L25; large subunit ribosomal protein L25
D CCONF_08960 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CCONF_03820 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CCONF_01970 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CCONF_00360 rpmD1; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CCONF_02075 rpmD2; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CCONF_03825 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D CCONF_03830 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CCONF_03815 rpmG2; 50S ribosomal protein L33 2 K02913 RP-L33; large subunit ribosomal protein L33
D CCONF_05585 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CCONF_09450 ykgO; 50S ribosomal protein L36 2 K02919 RP-L36; large subunit ribosomal protein L36
C 00970 Aminoacyl-tRNA biosynthesis [PATH:ccou00970]
D CCONF_05375 gltX2; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_00840 gltX1; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_05220 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CCONF_05175 gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CCONF_06530 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CCONF_06545 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CCONF_08595 glyQS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CCONF_06715 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CCONF_10850 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CCONF_04525 selA; L-seryl-tRNA(Sec) selenium transferase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CCONF_09845 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CCONF_03935 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CCONF_06390 fmt; Methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CCONF_00310 arnA; Bifunctional polymyxin resistance protein ArnA K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CCONF_09005 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CCONF_11225 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CCONF_07790 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CCONF_09940 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CCONF_04875 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CCONF_07230 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CCONF_06590 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CCONF_05600 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CCONF_05605 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CCONF_05665 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CCONF_02645 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:ccou03060]
D CCONF_02110 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D CCONF_01770 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D CCONF_06315 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D CCONF_06645 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D CCONF_06640 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D CCONF_06650 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CCONF_10980 misCA; Membrane protein insertase MisCA precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_11425 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_05835 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CCONF_03205 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CCONF_07455 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CCONF_07500 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D CCONF_10025 arsA; Arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D CCONF_05995 tatAy; Sec-independent protein translocase protein TatAy K03116 tatA; sec-independent protein translocase protein TatA
D CCONF_04700 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D CCONF_05990 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
D CCONF_07395 lepB1; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CCONF_07400 lepB2; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CCONF_07755 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:ccou04122]
D CCONF_05120 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CCONF_10355 sseA2; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CCONF_02745 sseA1; Putative thiosulfate sulfurtransferase SseA K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
D CCONF_05135 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CCONF_00720 moaE; Molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CCONF_04980 moaA; Cyclic pyranopterin monophosphate synthase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CCONF_00735 ThiS family protein K03636 moaD; sulfur-carrier protein
D CCONF_00715 moeZ; putative adenylyltransferase/sulfurtransferase MoeZ K21147 moeZR; sulfur-carrier protein adenylyltransferase/sulfurtransferase [EC:2.7.7.80 2.7.7.- 2.8.1.11 2.8.1.-]
D CCONF_04970 moaC2; Cyclic pyranopterin monophosphate synthase accessory protein 2 K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
C 03050 Proteasome
D CCONF_06025 mpa; Proteasome-associated ATPase K13527 mpa; proteasome-associated ATPase
C 03018 RNA degradation [PATH:ccou03018]
D CCONF_08970 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D CCONF_04180 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CCONF_07150 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CCONF_04780 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CCONF_04990 hypothetical protein K03628 rho; transcription termination factor Rho
D CCONF_07115 Putative ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CCONF_10430 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CCONF_10130 groL2; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_02390 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_04070 Polyphosphate kinase 2 (PPK2) K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CCONF_10110 Polyphosphate kinase 2 (PPK2) K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CCONF_11360 cca; CCA-adding enzyme K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:ccou03030]
D CCONF_05325 polC2; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_07670 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_00945 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_05150 polC1; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_07735 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CCONF_00920 dnaX1; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CCONF_01160 dnaX2; DNA polymerase III subunit tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CCONF_08875 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CCONF_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CCONF_11075 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CCONF_08555 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CCONF_09190 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_11125 ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_02215 ssbB; Single-stranded DNA-binding protein SsbB K03111 ssb; single-strand DNA-binding protein
D CCONF_08195 pspA2; Phosphoserine phosphatase 1 K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D CCONF_07390 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CCONF_05515 polA2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CCONF_05155 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:ccou03410]
D CCONF_01055 pdg; Ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CCONF_05445 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CCONF_09900 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D CCONF_00105 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D CCONF_07525 fpg1; Formamidopyrimidine-DNA glycosylase 1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CCONF_11145 nei1; Endonuclease 8 1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CCONF_03725 mutM; Formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D CCONF_03895 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CCONF_10210 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CCONF_02630 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CCONF_05515 polA2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CCONF_05155 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:ccou03420]
D CCONF_04155 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CCONF_05575 uvrA3; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D CCONF_01705 uvrA1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D CCONF_05540 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D CCONF_06350 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D CCONF_03750 uvrD2; ATP-dependent DNA helicase UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_03300 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_03315 uvrD1; ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_05515 polA2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CCONF_05155 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CCONF_03545 Type III restriction enzyme, res subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
C 03430 Mismatch repair [PATH:ccou03430]
D CCONF_03750 uvrD2; ATP-dependent DNA helicase UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_03300 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_03315 uvrD1; ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_04380 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CCONF_04375 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CCONF_09190 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_11125 ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_02215 ssbB; Single-stranded DNA-binding protein SsbB K03111 ssb; single-strand DNA-binding protein
D CCONF_07735 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CCONF_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CCONF_00920 dnaX1; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CCONF_08875 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CCONF_01160 dnaX2; DNA polymerase III subunit tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CCONF_05325 polC2; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_07670 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_00945 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_05150 polC1; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_05155 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CCONF_08855 dpnM; Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
C 03440 Homologous recombination [PATH:ccou03440]
D CCONF_09190 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_11125 ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_02215 ssbB; Single-stranded DNA-binding protein SsbB K03111 ssb; single-strand DNA-binding protein
D CCONF_00015 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D CCONF_08620 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D CCONF_00930 recR; Recombination protein RecR K06187 recR; recombination protein RecR
D CCONF_07050 recombinase A K03553 recA; recombination protein RecA
D CCONF_05515 polA2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CCONF_06660 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CCONF_06655 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CCONF_06665 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CCONF_05455 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CCONF_07735 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CCONF_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CCONF_00920 dnaX1; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CCONF_08875 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CCONF_01160 dnaX2; DNA polymerase III subunit tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CCONF_05325 polC2; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_07670 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_00945 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_05150 polC1; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_06400 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1 [PATH:ccou03250]
D CCONF_00140 ppiA; Peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:ccou02010]
D CCONF_04905 modA; Molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D CCONF_04900 cysW; Sulfate transport system permease protein CysW K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CCONF_11255 fbpA4; Iron-utilization periplasmic protein precursor K02012 afuA; iron(III) transport system substrate-binding protein
D CCONF_11250 malF; Maltose transport system permease protein MalF K02011 afuB; iron(III) transport system permease protein
D CCONF_11245 potA; Spermidine/putrescine import ATP-binding protein PotA K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CCONF_02030 gbuC; Glycine betaine/carnitine transport binding protein GbuC precursor K02002 proX; glycine betaine/proline transport system substrate-binding protein
D CCONF_02035 opuAB; Glycine betaine transport system permease protein OpuAB K02001 proW; glycine betaine/proline transport system permease protein
D CCONF_02040 opuAA; Glycine betaine transport ATP-binding protein OpuAA K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D CCONF_08335 osmF; Putative osmoprotectant uptake system substrate-binding protein OsmF precursor K05845 opuC; osmoprotectant transport system substrate-binding protein
D CCONF_08320 opuBB1; Choline transport system permease protein OpuBB K05846 opuBD; osmoprotectant transport system permease protein
D CCONF_08330 opuBB2; Choline transport system permease protein OpuBB K05846 opuBD; osmoprotectant transport system permease protein
D CCONF_08325 opuCA; Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CCONF_05945 sugC; Trehalose import ATP-binding protein SugC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CCONF_02815 lpqY; Trehalose-binding lipoprotein LpqY precursor K10236 thuE; trehalose/maltose transport system substrate-binding protein
D CCONF_02810 sugA; Trehalose transport system permease protein SugA K10237 thuF; trehalose/maltose transport system permease protein
D CCONF_02805 sugB; Trehalose transport system permease protein SugB K10238 thuG; trehalose/maltose transport system permease protein
D CCONF_02920 rbsB; D-ribose-binding periplasmic protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D CCONF_02925 rbsC; Ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D CCONF_02930 araG; Arabinose import ATP-binding protein AraG K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D CCONF_02910 rbsD; D-ribose pyranase K06726 rbsD; D-ribose pyranase [EC:5.4.99.62]
D CCONF_09620 pstS2; Phosphate-binding protein PstS 2 precursor K02040 pstS; phosphate transport system substrate-binding protein
D CCONF_09615 pstC; Phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D CCONF_09610 pstA; Phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D CCONF_09605 pstB3; Phosphate import ATP-binding protein PstB 3 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CCONF_01250 metQ1; D-methionine-binding lipoprotein MetQ precursor K02073 metQ; D-methionine transport system substrate-binding protein
D CCONF_02500 metQ2; D-methionine-binding lipoprotein MetQ precursor K02073 metQ; D-methionine transport system substrate-binding protein
D CCONF_02490 metI; D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D CCONF_02495 metN2; Methionine import ATP-binding protein MetN 2 K02071 metN; D-methionine transport system ATP-binding protein
D CCONF_01685 yfiY1; putative siderophore-binding lipoprotein YfiY precursor K25286 fagD; iron-siderophore transport system substrate-binding protein
D CCONF_02615 yfiY2; putative siderophore-binding lipoprotein YfiY precursor K25286 fagD; iron-siderophore transport system substrate-binding protein
D CCONF_00315 yfmC; Fe(3+)-citrate-binding protein YfmC precursor K25286 fagD; iron-siderophore transport system substrate-binding protein
D CCONF_00335 yfiZ1; putative siderophore transport system permease protein YfiZ precursor K23186 fepD; iron-siderophore transport system permease protein
D CCONF_01680 fepD; Ferric enterobactin transport system permease protein FepD K23186 fepD; iron-siderophore transport system permease protein
D CCONF_00330 yfhA1; putative siderophore transport system permease protein YfhA K23187 fepG; iron-siderophore transport system permease protein
D CCONF_01675 fepG; Ferric enterobactin transport system permease protein FepG K23187 fepG; iron-siderophore transport system permease protein
D CCONF_00325 yusV1; putative siderophore transport system ATP-binding protein YusV K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D CCONF_01670 yusV2; putative siderophore transport system ATP-binding protein YusV K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D CCONF_01640 troA; Periplasmic zinc-binding protein TroA precursor K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D CCONF_01630 mntB2; Manganese transport system membrane protein MntB K11708 troC; manganese/zinc/iron transport system permease protein
D CCONF_01625 mntB1; Manganese transport system membrane protein MntB K11709 troD; manganese/zinc/iron transport system permease protein
D CCONF_01635 znuC1; Zinc import ATP-binding protein ZnuC K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D CCONF_07060 bioY; Biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D CCONF_07070 bioN; Energy-coupling factor transporter transmembrane protein BioN K16783 bioN; biotin transport system permease protein
D CCONF_07065 bioM; Biotin transport ATP-binding protein BioM K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D CCONF_06170 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D CCONF_10545 ecfT1; Energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D CCONF_10590 ecfT2; Energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D CCONF_01850 ykoC; Putative HMP/thiamine permease protein YkoC K16785 ecfT; energy-coupling factor transport system permease protein
D CCONF_00695 tagG; Teichoic acid translocation permease protein TagG K09690 wzm; homopolymeric O-antigen transport system permease protein
D CCONF_00690 tagH1; Teichoic acids export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D CCONF_08480 ABC-2 type transporter K09692 tagG; teichoic acid transport system permease protein
D CCONF_08475 tagH2; Teichoic acids export ATP-binding protein TagH K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D CCONF_11165 FtsX-like permease family protein K09813 hrtB; hemin transport system permease protein
D CCONF_11160 ytrE3; ABC transporter ATP-binding protein YtrE K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D CCONF_03405 ABC-2 family transporter protein K20491 nisE; lantibiotic transport system permease protein
D CCONF_03410 yxlF1; putative ABC transporter ATP-binding protein YxlF K20490 nisF; lantibiotic transport system ATP-binding protein
D CCONF_03465 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CCONF_03460 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CCONF_10560 irtA2; Iron import ATP-binding/permease protein IrtA K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CCONF_10605 irtA3; Iron import ATP-binding/permease protein IrtA K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CCONF_10555 irtB1; Iron import ATP-binding/permease protein IrtB K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CCONF_10600 irtB2; Iron import ATP-binding/permease protein IrtB K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CCONF_10490 putative ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CCONF_10495 putative ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
C 02060 Phosphotransferase system (PTS) [PATH:ccou02060]
D CCONF_06960 ptsI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CCONF_06975 ptsH; Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D CCONF_09860 glcB; PTS system glucoside-specific EIICBA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CCONF_05530 bglF; PTS system beta-glucoside-specific EIIBCA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CCONF_03035 manP; PTS system mannose-specific EIIBCA component K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191]
D CCONF_02955 ulaA; Ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
D CCONF_06970 fruA; PTS system fructose-specific EIIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D CCONF_06965 lacC; Tagatose-6-phosphate kinase K00882 fruK; 1-phosphofructokinase [EC:2.7.1.56]
C 03070 Bacterial secretion system [PATH:ccou03070]
D CCONF_06645 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D CCONF_06640 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D CCONF_01770 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D CCONF_06315 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D CCONF_02110 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D CCONF_06650 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CCONF_10980 misCA; Membrane protein insertase MisCA precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_11425 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_05835 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CCONF_03205 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CCONF_07500 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D CCONF_07455 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CCONF_05995 tatAy; Sec-independent protein translocase protein TatAy K03116 tatA; sec-independent protein translocase protein TatA
D CCONF_04700 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D CCONF_05990 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:ccou02020]
D CCONF_03030 phoB; Alkaline phosphatase 3 precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CCONF_11240 pld; Phospholipase D precursor K01113 phoD; alkaline phosphatase D [EC:3.1.3.1]
D CCONF_01465 senX3; Signal-transduction histidine kinase senX3 K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D CCONF_01470 regX3; Sensory transduction protein regX3 K07776 regX3; two-component system, OmpR family, response regulator RegX3
D CCONF_09620 pstS2; Phosphate-binding protein PstS 2 precursor K02040 pstS; phosphate transport system substrate-binding protein
D CCONF_06275 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D CCONF_03840 mprB; Signal transduction histidine-protein kinase/phosphatase MprB K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D CCONF_03835 mprA; Response regulator MprA K07669 mprA; two-component system, OmpR family, response regulator MprA
D CCONF_03845 degP1; putative periplasmic serine endoprotease DegP-like precursor K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D CCONF_03185 mtrB; Sensor histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D CCONF_03180 mtrA; DNA-binding response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D CCONF_00005 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CCONF_03410 yxlF1; putative ABC transporter ATP-binding protein YxlF K20490 nisF; lantibiotic transport system ATP-binding protein
D CCONF_03405 ABC-2 family transporter protein K20491 nisE; lantibiotic transport system permease protein
D CCONF_09085 dcuB; Anaerobic C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CCONF_04950 narG; Nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_04945 narY; Respiratory nitrate reductase 2 beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_04935 narX2; Nitrate reductase-like protein NarX K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_04940 narX3; Nitrate reductase-like protein NarX K00373 narJ; nitrate reductase molybdenum cofactor assembly chaperone NarJ/NarW
D CCONF_01825 desK1; Sensor histidine kinase DesK K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D CCONF_01820 vraR1; Response regulator protein VraR K07693 desR; two-component system, NarL family, response regulator DesR
D CCONF_01100 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D CCONF_01105 hypothetical protein K12510 tadB; tight adherence protein B
D CCONF_07460 glnD; Bifunctional uridylyltransferase/uridylyl-removing enzyme K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D CCONF_07465 glnB; Nitrogen regulatory protein P-II K04751 glnB; nitrogen regulatory protein P-II 1
D CCONF_08085 glnA1; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08160 glnA2; putative glutamine synthetase 2 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08380 glnA3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08535 glnA4; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_01050 crp; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CCONF_08210 ptpA; putative low molecular weight protein-tyrosine-phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48]
D CCONF_08545 wecB; UDP-N-acetylglucosamine 2-epimerase K01791 wecB; UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing) [EC:5.1.3.14]
D CCONF_08445 wbpA; UDP-N-acetyl-D-glucosamine 6-dehydrogenase K02472 wecC; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase [EC:1.1.1.336]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:ccou02024]
D CCONF_01320 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CCONF_11285 trpE; Anthranilate synthase component 1 K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CCONF_11290 trpG; Anthranilate synthase component 2 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27]
D CCONF_07930 aroG; Phospho-2-dehydro-3-deoxyheptonate aldolase AroG K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CCONF_01390 Bacterial extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D CCONF_01380 hypothetical protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CCONF_01385 spermidine/putrescine ABC transporter membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CCONF_01375 cysA; Sulfate/thiosulfate import ATP-binding protein CysA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CCONF_08695 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01445 fadD1; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01450 fadD2; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01050 crp; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CCONF_06375 ribD; Riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CCONF_06635 Bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CCONF_08760 gsiB1; Glutathione-binding protein GsiB precursor K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CCONF_09125 gsiB2; Glutathione-binding protein GsiB precursor K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CCONF_08765 nikB; Nickel transport system permease protein NikB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CCONF_09120 gsiC; Glutathione transport system permease protein GsiC K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CCONF_08770 gsiD; Glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CCONF_09115 ddpC; putative D,D-dipeptide transport system permease protein DdpC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CCONF_08775 gsiA2; Glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CCONF_09110 gsiA3; Glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CCONF_10980 misCA; Membrane protein insertase MisCA precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_11425 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_01770 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D CCONF_06315 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D CCONF_02110 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D CCONF_06650 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CCONF_05835 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CCONF_03205 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CCONF_07500 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D CCONF_07455 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CCONF_03410 yxlF1; putative ABC transporter ATP-binding protein YxlF K20490 nisF; lantibiotic transport system ATP-binding protein
D CCONF_03405 ABC-2 family transporter protein K20491 nisE; lantibiotic transport system permease protein
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D CCONF_02920 rbsB; D-ribose-binding periplasmic protein precursor K10439 rbsB; ribose transport system substrate-binding protein
C 02040 Flagellar assembly
D CCONF_06840 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CCONF_04180 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:ccou01501]
D CCONF_10665 ybbD; putative lipoprotein YbbD precursor K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CCONF_07870 pbpB; Penicillin-binding protein PbpB K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:ccou01502]
D CCONF_05430 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CCONF_02340 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CCONF_07860 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CCONF_07855 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CCONF_07840 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:ccou01503]
D CCONF_11405 lytC; N-acetylmuramoyl-L-alanine amidase LytC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CCONF_00140 ppiA; Peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:ccou01000]
C 01001 Protein kinases [BR:ccou01001]
D CCONF_10265 pknG; Serine/threonine-protein kinase PknG K14949 pknG; serine/threonine-protein kinase PknG [EC:2.7.11.1]
D CCONF_00160 pknB; Serine/threonine-protein kinase PknB K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D CCONF_00165 pknA; Serine/threonine-protein kinase PknA K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]
D CCONF_07925 pknL; Serine/threonine-protein kinase PknL K08884 K08884; serine/threonine protein kinase, bacterial [EC:2.7.11.1]
D CCONF_01465 senX3; Signal-transduction histidine kinase senX3 K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D CCONF_03840 mprB; Signal transduction histidine-protein kinase/phosphatase MprB K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D CCONF_03185 mtrB; Sensor histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D CCONF_09760 tcrY; putative sensor histidine kinase TcrY K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CCONF_01825 desK1; Sensor histidine kinase DesK K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:ccou01009]
D CCONF_00180 pstP; PP2C-family Ser/Thr phosphatase K20074 prpC; PPM family protein phosphatase [EC:3.1.3.16]
D CCONF_09415 serB3; Phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:ccou01002]
D CCONF_07755 lspA; Lipoprotein signal peptidase K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CCONF_04425 pcp; Pyrrolidone-carboxylate peptidase K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3]
D CCONF_02435 guaA; GMP synthase [glutamine-hydrolyzing] K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CCONF_07965 putative endopeptidase precursor K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CCONF_09665 purF; Amidophosphoribosyltransferase precursor K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CCONF_02335 glmS; Glutamine--fructose-6-phosphate aminotransferase [isomerizing] K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CCONF_08010 asnB; Putative asparagine synthetase [glutamine-hydrolyzing] K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CCONF_04450 yraA; Putative cysteine protease YraA K05520 yhbO; deglycase [EC:3.5.1.124]
D CCONF_08935 Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D CCONF_10975 Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D CCONF_08825 CAAX amino terminal protease self-immunity K07052 K07052; CAAX protease family protein
D CCONF_10885 CAAX amino terminal protease self-immunity K07052 K07052; CAAX protease family protein
D CCONF_09080 pepN2; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D CCONF_11385 pepN3; Aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2]
D CCONF_01750 dcp; Peptidyl-dipeptidase dcp K01284 dcp; peptidyl-dipeptidase Dcp [EC:3.4.15.5]
D CCONF_00620 pepO; Neutral endopeptidase K07386 pepO; putative endopeptidase [EC:3.4.24.-]
D CCONF_08035 pepA; Cytosol aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CCONF_04635 dapE2; Succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CCONF_10145 dapE3; Succinyl-diaminopimelate desuccinylase K23980 tpdA; cysteinylglycine-S-conjugate dipeptidase [EC:3.4.13.23]
D CCONF_07285 map; Methionine aminopeptidase 2 K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CCONF_02120 map-1; Methionine aminopeptidase 1 K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CCONF_10070 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CCONF_03845 degP1; putative periplasmic serine endoprotease DegP-like precursor K08372 pepD; putative serine protease PepD [EC:3.4.21.-]
D CCONF_02170 apr; Subtilisin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D CCONF_09720 ptrB; Protease 2 K01354 ptrB; oligopeptidase B [EC:3.4.21.83]
D CCONF_02660 dacF; D-alanyl-D-alanine carboxypeptidase DacF precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CCONF_10080 dacB; D-alanyl-D-alanine carboxypeptidase DacB precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D CCONF_09030 clpP1; ATP-dependent Clp protease proteolytic subunit 1 K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CCONF_09035 clpP2; ATP-dependent Clp protease proteolytic subunit 2 K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CCONF_03335 hypothetical protein K07177 K07177; Lon-like protease
D CCONF_06950 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CCONF_07395 lepB1; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CCONF_07400 lepB2; Signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89]
C 01003 Glycosyltransferases [BR:ccou01003]
D CCONF_05950 Undecaprenyl-phosphate mannosyltransferase K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83]
D CCONF_03915 pmt; putative dolichyl-phosphate-mannose--protein mannosyltransferase K00728 POMT; dolichyl-phosphate-mannose-protein mannosyltransferase [EC:2.4.1.109]
D CCONF_06695 pimA; GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase K08256 pimA; phosphatidyl-myo-inositol alpha-mannosyltransferase [EC:2.4.1.345]
D CCONF_07960 pimB1; GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase K13668 pimB; phosphatidyl-myo-inositol dimannoside synthase [EC:2.4.1.346]
D CCONF_01725 mgtA1; GDP-mannose-dependent alpha-mannosyltransferase K12583 mgtA; phosphatidylinositol alpha 1,6-mannosyltransferase [EC:2.4.1.-]
D CCONF_04675 glgA; Capsular glucan synthase K16148 glgM; alpha-maltose-1-phosphate synthase [EC:2.4.1.342]
D CCONF_05010 wecA; Decaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
D CCONF_07940 Polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol mannoside mannosyltransferase K13671 K13671; alpha-1,2-mannosyltransferase [EC:2.4.1.-]
D CCONF_07910 hypothetical protein K14337 mptA; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D CCONF_06260 hypothetical protein K14339 mptB; alpha-1,6-mannosyltransferase [EC:2.4.1.-]
D CCONF_00635 embC; putative arabinosyltransferase C K11387 embC; arabinosyltransferase C [EC:2.4.2.-]
D CCONF_10780 hypothetical protein K13687 aftB; arabinofuranosyltransferase [EC:2.4.2.-]
D CCONF_06775 Alpha-(1->3)-arabinofuranosyltransferase K16647 aftC; arabinofuranan 3-O-arabinosyltransferase [EC:2.4.2.47]
D CCONF_10680 aftD; Alpha-(1->3)-arabinofuranosyltransferase K16648 aftD; arabinofuranan 3-O-arabinosyltransferase [EC:2.4.2.-]
D CCONF_00685 glfT1; Galactofuranosyl transferase GlfT1 K16649 glft1; rhamnopyranosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,3/1,4-galactofuranosyltransferase [EC:2.4.1.287]
D CCONF_10795 glfT2; Galactofuranosyl transferase GlfT2 K16650 glft2; galactofuranosylgalactofuranosylrhamnosyl-N-acetylglucosaminyl-diphospho-decaprenol beta-1,5/1,6-galactofuranosyltransferase [EC:2.4.1.288]
D CCONF_03075 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase K16870 wbbL; N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase [EC:2.4.1.289]
D CCONF_10615 hypothetical protein K05841 E2.4.1.173; sterol 3beta-glucosyltransferase [EC:2.4.1.173]
D CCONF_09800 otsA; Trehalose-phosphate synthase K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347]
D CCONF_04650 gpgS; Glucosyl-3-phosphoglycerate synthase K13693 gpgS; glucosyl-3-phosphoglycerate synthase [EC:2.4.1.266]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:ccou01005]
D CCONF_05010 wecA; Decaprenyl-phosphate N-acetylglucosaminephosphotransferase K02851 wecA; UDP-GlcNAc:undecaprenyl-phosphate/decaprenyl-phosphate GlcNAc-1-phosphate transferase [EC:2.7.8.33 2.7.8.35]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:ccou01011]
D CCONF_09535 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CCONF_01315 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CCONF_07835 murC; UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CCONF_07850 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CCONF_07865 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CCONF_05430 ddl; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CCONF_02340 alr; Alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CCONF_09370 murI; Glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CCONF_07855 mraY; Phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CCONF_07840 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CCONF_06085 uppP; Undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CCONF_11375 mviN; putative peptidoglycan biosynthesis protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D CCONF_07870 pbpB; Penicillin-binding protein PbpB K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CCONF_00170 pbpA; Penicillin-binding protein A K05364 pbpA; penicillin-binding protein A
D CCONF_02660 dacF; D-alanyl-D-alanine carboxypeptidase DacF precursor K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
D CCONF_10080 dacB; D-alanyl-D-alanine carboxypeptidase DacB precursor K07259 dacB; serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D CCONF_07965 putative endopeptidase precursor K21471 cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]
D CCONF_08935 Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D CCONF_10975 Sortase family protein K07284 srtA; sortase A [EC:3.4.22.70]
D CCONF_06520 putative aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CCONF_11405 lytC; N-acetylmuramoyl-L-alanine amidase LytC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:ccou01004]
D CCONF_09300 kasB; 3-oxoacyl-[acyl-carrier-protein] synthase 2 K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D CCONF_01335 Phenolphthiocerol synthesis polyketide synthase type I Pks15/1 K11533 fas; fatty acid synthase, bacteria type [EC:2.3.1.-]
D CCONF_06675 tesB; Acyl-CoA thioesterase 2 K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-]
D CCONF_10750 ppsA1; Phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA K12437 pks13; polyketide synthase 13
D CCONF_08695 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01445 fadD1; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01450 fadD2; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_10755 Long-chain-fatty-acid--AMP ligase FadD32 K12428 fadD32; fatty acid CoA ligase FadD32
D CCONF_07950 plsC1; 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:ccou01008]
D CCONF_00275 MbtH-like protein K05375 mbtH; MbtH protein
C 01006 Prenyltransferases [BR:ccou01006]
D CCONF_07905 (2E,6E)-farnesyl diphosphate synthase K13787 idsA; geranylgeranyl diphosphate synthase, type I [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CCONF_04300 uppS; (2Z,6E)-farnesyl diphosphate synthase K12503 uppS; short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68]
D CCONF_08615 Trans,polycis-polyprenyl diphosphate synthase ((2Z,6E)-farnesyl diphosphate specific) K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CCONF_07015 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CCONF_01620 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K02548 menA; 1,4-dihydroxy-2-naphthoate polyprenyltransferase [EC:2.5.1.74]
D CCONF_06285 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CCONF_10785 Decaprenyl-phosphate phosphoribosyltransferase K14136 K14136; decaprenyl-phosphate phosphoribosyltransferase [EC:2.4.2.45]
C 01007 Amino acid related enzymes [BR:ccou01007]
D CCONF_05375 gltX2; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_00840 gltX1; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_05665 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CCONF_02645 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CCONF_09845 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CCONF_04875 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CCONF_03935 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CCONF_07790 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CCONF_09005 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CCONF_11225 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CCONF_09940 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CCONF_06545 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CCONF_06590 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CCONF_08595 glyQS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CCONF_10850 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CCONF_07230 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CCONF_06715 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CCONF_06530 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CCONF_05600 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CCONF_05605 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CCONF_10515 alaA; Glutamate-pyruvate aminotransferase AlaA K14260 alaA; alanine-synthesizing transaminase [EC:2.6.1.66 2.6.1.2]
D CCONF_07630 hisC; Histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_00745 pat; Putative phenylalanine aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CCONF_08735 patB; Cystathionine beta-lyase PatB K14155 patB; cysteine-S-conjugate beta-lyase [EC:4.4.1.13]
D CCONF_05625 argD; Acetylornithine aminotransferase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CCONF_01570 hemL2; Glutamate-1-semialdehyde 2,1-aminomutase 2 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CCONF_08030 ilvE1; Branched-chain-amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CCONF_03615 serC; Phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:ccou00194]
D CCONF_05055 atpC; ATP synthase epsilon chain K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CCONF_05050 atpD; ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CCONF_05045 atpG; ATP synthase gamma chain K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CCONF_05040 atpA; ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CCONF_05035 atpH; ATP synthase subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CCONF_05030 atpF; ATP synthase subunit b K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CCONF_05025 atpE; ATP synthase subunit c K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CCONF_05020 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:ccou03000]
D CCONF_06925 oxyR; putative hydrogen peroxide-inducible genes activator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator
D CCONF_05235 putative HTH-type transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D CCONF_10930 gltC; HTH-type transcriptional regulator GltC K09681 gltC; LysR family transcriptional regulator, transcription activator of glutamate synthase operon
D CCONF_06955 srlR; Glucitol operon repressor K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor
D CCONF_02935 cytR; HTH-type transcriptional repressor CytR K02529 galR; LacI family transcriptional regulator, galactose operon repressor
D CCONF_10855 dasR; HTH-type transcriptional repressor DasR K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D CCONF_01400 yegW; putative HTH-type transcriptional regulator YegW K24967 nagR; GntR family transcriptional regulator, N-acetylglucosamine utilization regulator
D CCONF_08755 yvoA; HTH-type transcriptional repressor YvoA K03710 K03710; GntR family transcriptional regulator
D CCONF_02570 gabR; HTH-type transcriptional regulatory protein GabR K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CCONF_07660 tetR; Tetracycline repressor protein class E K18476 tetR; TetR/AcrR family transcriptional regulator, tetracycline repressor protein
D CCONF_06160 acnR; HTH-type transcriptional repressor AcnR K21962 acnR; TetR/AcrR family transcriptional regulator, transcriptional repressor of aconitase
D CCONF_02985 betI; HTH-type transcriptional regulator BetI K23778 rcdA; TetR/AcrR family transcriptional regulator, regulator of biofilm formation and stress response
D CCONF_09540 transcriptional regulator MalT K21685 ramA; LuxR family transcriptional regulator, regulator of acetate metabolism
D CCONF_10415 hspR; Putative heat shock protein HspR K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D CCONF_08605 zur; Zinc uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CCONF_01050 crp; cAMP receptor protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein
D CCONF_08225 nmtR; HTH-type transcriptional regulator NmtR K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor
D CCONF_04415 cmtR; HTH-type transcriptional regulator CmtR K21885 cmtR; ArsR family transcriptional regulator, cadmium/lead-responsive transcriptional repressor
D CCONF_02710 anaerobic benzoate catabolism transcriptional regulator K21686 prpR; XRE family transcriptional regulator, fatty acid utilization regulator
D CCONF_01255 Helix-turn-helix protein K07110 ramB; XRE family transcriptional regulator, fatty acid utilization regulator
D CCONF_07080 clgR; Transcriptional regulator ClgR K27043 clgR; XRE family transcriptional regulator, stress-response regulator
D CCONF_06890 dtxR; Diphtheria toxin repressor K26252 dtxR; DtxR family transcriptional regulator, iron-dependent repressor
D CCONF_09735 ideR3; Iron-dependent repressor IdeR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D CCONF_01645 ideR1; Iron-dependent repressor IdeR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D CCONF_02220 ideR2; Iron-dependent repressor IdeR K03709 troR; DtxR family transcriptional regulator, Mn-dependent transcriptional regulator
D CCONF_02820 birA; Bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CCONF_10925 hypothetical protein K07729 K07729; putative transcriptional regulator
D CCONF_02510 Helix-turn-helix protein K07729 K07729; putative transcriptional regulator
D CCONF_10455 putA; Bifunctional protein PutA K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CCONF_01030 whiB1; Transcriptional regulator WhiB4 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D CCONF_02400 whiB2; Redox-responsive transcriptional regulator WhiB3 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D CCONF_03085 whmD; Transcriptional regulator WhiB2 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D CCONF_03260 whiB3; Transcriptional regulator WhiB1 K18955 whiB1_2_3_4; WhiB family transcriptional regulator, redox-sensing transcriptional regulator
D CCONF_09580 csoR; Copper-sensing transcriptional repressor CsoR K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor
D CCONF_11410 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CCONF_09875 carD; RNA polymerase-binding transcription factor CarD K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription
D CCONF_05635 argR; Arginine repressor K03402 argR; transcriptional regulator of arginine metabolism
D CCONF_08655 hrcA; Heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor
D CCONF_06455 pyrR; Bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
D CCONF_11355 hypothetical protein K07735 algH; putative transcriptional regulator
D CCONF_06940 nrdR; Transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR
D CCONF_07885 cell division protein MraZ K03925 mraZ; transcriptional regulator MraZ
C 03021 Transcription machinery [BR:ccou03021]
D CCONF_03545 Type III restriction enzyme, res subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D CCONF_02150 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CCONF_01810 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CCONF_01815 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CCONF_06415 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CCONF_06840 sigA; RNA polymerase sigma factor SigA K03086 rpoD; RNA polymerase primary sigma factor
D CCONF_06885 sigB; RNA polymerase sigma factor SigB K03087 rpoS; RNA polymerase nonessential primary-like sigma factor
D CCONF_04690 sigE; ECF RNA polymerase sigma factor SigE K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CCONF_00980 sigC; ECF RNA polymerase sigma factor SigC K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CCONF_02405 sigD; ECF RNA polymerase sigma factor SigD K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CCONF_03250 sigH; ECF RNA polymerase sigma factor SigH K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily
D CCONF_07205 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
D CCONF_06475 hypothetical protein K03625 nusB; transcription antitermination protein NusB
D CCONF_01775 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
D CCONF_04280 greA; Transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CCONF_04990 hypothetical protein K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:ccou03019]
D CCONF_08970 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D CCONF_07530 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CCONF_07115 Putative ribonuclease J K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CCONF_09225 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D CCONF_04780 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CCONF_04180 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CCONF_07150 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CCONF_04990 hypothetical protein K03628 rho; transcription termination factor Rho
D CCONF_10430 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CCONF_10130 groL2; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_02390 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_04070 Polyphosphate kinase 2 (PPK2) K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CCONF_10110 Polyphosphate kinase 2 (PPK2) K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CCONF_11360 cca; CCA-adding enzyme K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
D CCONF_06345 glmZ(sRNA)-inactivating NTPase K06958 rapZ; RNase adapter protein RapZ
D CCONF_05985 ski2-like helicase K03727 helY; ATP-dependent RNA helicase HelY [EC:5.6.2.6]
D CCONF_06935 hrpB2; ATP-dependent RNA helicase HrpB K03578 hrpA; ATP-dependent RNA helicase HrpA [EC:5.6.2.6]
D CCONF_00525 hrpB1; ATP-dependent RNA helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6]
C 03041 Spliceosome
C 03011 Ribosome [BR:ccou03011]
D CCONF_05525 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CCONF_07355 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CCONF_01960 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CCONF_02145 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CCONF_00355 rpsE1; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CCONF_02070 rpsE2; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CCONF_11120 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CCONF_01875 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CCONF_00340 rpsH1; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CCONF_02055 rpsH2; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CCONF_02295 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CCONF_01925 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CCONF_02140 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CCONF_01870 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CCONF_02135 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CCONF_03810 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CCONF_07155 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CCONF_07445 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CCONF_01975 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CCONF_03805 rpsR1; 30S ribosomal protein S18 1 K02963 RP-S18; small subunit ribosomal protein S18
D CCONF_01950 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CCONF_08850 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CCONF_01785 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CCONF_01945 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CCONF_01930 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CCONF_01935 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CCONF_01990 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CCONF_00345 rplF1; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CCONF_02060 rplF2; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CCONF_11130 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CCONF_01795 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CCONF_01780 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CCONF_01800 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CCONF_02290 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CCONF_01980 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CCONF_02080 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CCONF_01965 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CCONF_02155 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CCONF_00350 rplR1; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CCONF_02065 rplR2; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CCONF_07405 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CCONF_05590 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CCONF_08965 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CCONF_01955 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CCONF_01940 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CCONF_01985 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CCONF_08960 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CCONF_03820 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CCONF_01970 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CCONF_00360 rpmD1; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CCONF_02075 rpmD2; 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30
D CCONF_03825 rpmE2; 50S ribosomal protein L31 type B K02909 RP-L31; large subunit ribosomal protein L31
D CCONF_03830 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CCONF_03815 rpmG2; 50S ribosomal protein L33 2 K02913 RP-L33; large subunit ribosomal protein L33
D CCONF_05585 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CCONF_09450 ykgO; 50S ribosomal protein L36 2 K02919 RP-L36; large subunit ribosomal protein L36
D CCONF_04085 ctc; General stress protein CTC K02897 RP-L25; large subunit ribosomal protein L25
C 03009 Ribosome biogenesis [BR:ccou03009]
D CCONF_07530 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CCONF_09225 orn; Oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-]
D CCONF_08625 era; GTPase Era K03595 era; GTPase
D CCONF_08930 obg; GTPase Obg K03979 obgE; GTPase [EC:3.6.5.-]
D CCONF_07205 hypothetical protein K02600 nusA; transcription termination/antitermination protein NusA
D CCONF_06475 hypothetical protein K03625 nusB; transcription antitermination protein NusB
D CCONF_01775 hypothetical protein K02601 nusG; transcription termination/antitermination protein NusG
D CCONF_03955 rsmA; Ribosomal RNA small subunit methyltransferase A K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CCONF_06385 rsmB; Ribosomal RNA small subunit methyltransferase B K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D CCONF_05465 rsmD; Ribosomal RNA small subunit methyltransferase D K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D CCONF_08645 rsmE; Ribosomal RNA small subunit methyltransferase E K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CCONF_11420 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CCONF_07880 rsmH; Ribosomal RNA small subunit methyltransferase H K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CCONF_03920 rsmI; Ribosomal RNA small subunit methyltransferase I K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CCONF_05700 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CCONF_04665 rlmAII; 23S rRNA (guanine(748)-N(1))-methyltransferase K00563 rlmA1; 23S rRNA (guanine745-N1)-methyltransferase [EC:2.1.1.187]
D CCONF_09840 Putative TrmH family tRNA/rRNA methyltransferase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CCONF_07325 rlmN; putative dual-specificity RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CCONF_11000 rluA2; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CCONF_05755 rluB; Ribosomal large subunit pseudouridine synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CCONF_07750 rluD; Ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CCONF_02360 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CCONF_07425 rimM; Ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM
D CCONF_08970 rne; Ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
D CCONF_06525 yrrK; Putative Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CCONF_04780 deaD; ATP-dependent RNA helicase DeaD K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CCONF_03235 rsgA; Putative ribosome biogenesis GTPase RsgA K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
D CCONF_05765 der; GTPase Der K03977 engA; GTPase
D CCONF_06995 hflX; GTPase HflX K03665 hflX; GTPase
D CCONF_05005 ywlC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CCONF_06625 relA; Bifunctional (p)ppGpp synthase/hydrolase relA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CCONF_07195 rbfA; Ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CCONF_07210 rimP; Ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP
D CCONF_00595 ribosome-associated protein K14761 rlbA; ribosome-associated protein
D CCONF_08900 rsfS; Ribosomal silencing factor RsfS K09710 ybeB; ribosome-associated protein
D CCONF_08635 ybeY; Endoribonuclease YbeY K07042 ybeY; probable rRNA maturation factor
D CCONF_04405 ychF; Ribosome-binding ATPase YchF K06942 ychF; ribosome-binding ATPase
D CCONF_07535 hypothetical protein K07040 yceD; DUF177 domain-containing protein
C 03016 Transfer RNA biogenesis [BR:ccou03016]
D CCONF_05375 gltX2; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_00840 gltX1; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_07230 proS; Proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CCONF_07790 ileS; Isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CCONF_11225 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CCONF_03935 metG; Methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CCONF_04875 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CCONF_09940 lysU; Lysine--tRNA ligase, heat inducible K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CCONF_06545 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CCONF_06530 alaS; Alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CCONF_08595 glyQS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CCONF_06715 thrS; Threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CCONF_10850 serS; Serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CCONF_09845 cysS; Cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CCONF_09005 valS; Valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CCONF_06590 hisS; Histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CCONF_05600 pheS; Phenylalanine--tRNA ligase alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CCONF_05605 pheT; Phenylalanine--tRNA ligase beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CCONF_05665 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CCONF_02645 trpS; Tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CCONF_06880 dtd; D-tyrosyl-tRNA(Tyr) deacylase K07560 dtd; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]
D CCONF_06030 trmI; tRNA (adenine(58)-N(1))-methyltransferase TrmI K07442 TRM61; tRNA (adenine57-N1/adenine58-N1)-methyltransferase catalytic subunit [EC:2.1.1.219 2.1.1.220]
D CCONF_10715 trmB; tRNA (guanine-N(7)-)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CCONF_02160 truA; tRNA pseudouridine synthase A K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CCONF_07170 truB; tRNA pseudouridine synthase B K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CCONF_05120 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CCONF_05005 ywlC; Threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D CCONF_07015 miaA; tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CCONF_04515 selD; Selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CCONF_03715 cysQ; 3'-phosphoadenosine 5'-phosphate phosphatase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CCONF_09360 rph; Ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D CCONF_06795 rnd; Ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D CCONF_00805 tadA; tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
D CCONF_07040 miaB; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CCONF_07420 trmD; tRNA (guanine-N(1)-)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CCONF_02525 trmL; tRNA (cytidine(34)-2'-O)-methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CCONF_05595 Putative TrmH family tRNA/rRNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
D CCONF_11000 rluA2; Ribosomal large subunit pseudouridine synthase A K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
D CCONF_05135 mnmA; tRNA-specific 2-thiouridylase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CCONF_09650 putative global regulator K06980 ygfZ; tRNA-modifying protein YgfZ
D CCONF_00825 tgt; Queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CCONF_02355 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CCONF_02365 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CCONF_02345 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CCONF_07150 pnp; Polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:ccou03012]
D CCONF_07200 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CCONF_05580 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CCONF_07350 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D CCONF_01885 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D CCONF_01880 fusA; Elongation factor G K02355 fusA; elongation factor G
D CCONF_04530 selB; Selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor
D CCONF_04995 prfA; Peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CCONF_07340 frr; Ribosome-recycling factor K02838 frr; ribosome recycling factor
D CCONF_05000 prmC1; Release factor glutamine methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CCONF_04055 pth1; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CCONF_04080 pth2; Peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CCONF_02130 infA; Translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CCONF_06480 efp; Elongation factor P K02356 efp; elongation factor P
D CCONF_03450 prfB; Peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
D CCONF_04045 prfC; Peptide chain release factor 3 K02837 prfC; peptide chain release factor 3
C 03110 Chaperones and folding catalysts [BR:ccou03110]
D CCONF_10360 clpB; Chaperone protein ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CCONF_09915 clpC1; ATP-dependent Clp protease ATP-binding subunit ClpC1 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC
D CCONF_09020 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CCONF_10430 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CCONF_10130 groL2; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_02390 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_08650 dnaJ1; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CCONF_10420 dnaJ2; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CCONF_10425 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D CCONF_07685 hslR; Heat shock protein 15 K04762 hslR; ribosome-associated heat shock protein Hsp15
D CCONF_02385 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D CCONF_10070 ftsH; ATP-dependent zinc metalloprotease FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CCONF_05020 atpB; ATP synthase subunit a K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CCONF_06725 hypothetical protein K09796 pccA; periplasmic copper chaperone A
D CCONF_02170 apr; Subtilisin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D CCONF_00140 ppiA; Peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D CCONF_06605 cypB; Peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CCONF_11050 trxC; Putative thioredoxin-2 K03671 TXN; thioredoxin
D CCONF_11400 trxA2; Thioredoxin-1 K03671 TXN; thioredoxin
D CCONF_05080 trxA1; Thioredoxin K05838 ybbN; putative thioredoxin
C 04131 Membrane trafficking [BR:ccou04131]
D CCONF_08985 ndk; Nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CCONF_10025 arsA; Arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D CCONF_04065 gap1; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CCONF_06330 gap2; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CCONF_01460 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
D CCONF_07575 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
C 04121 Ubiquitin system [BR:ccou04121]
D CCONF_06015 pup; Prokaryotic ubiquitin-like protein Pup K13570 pup; prokaryotic ubiquitin-like protein Pup
C 03051 Proteasome [BR:ccou03051]
D CCONF_06025 mpa; Proteasome-associated ATPase K13527 mpa; proteasome-associated ATPase
D CCONF_06010 pafA; Pup--protein ligase K13571 pafA; proteasome accessory factor A [EC:6.3.1.19]
D CCONF_06005 hypothetical protein K13572 pafB; proteasome accessory factor B
D CCONF_06000 hypothetical protein K13573 pafC; proteasome accessory factor C
D CCONF_06020 dop; Pup deamidase/depupylase K20814 dop; Pup amidohydrolase [EC:3.5.1.119]
C 03032 DNA replication proteins [BR:ccou03032]
D CCONF_00005 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CCONF_11075 dnaB; Replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CCONF_08555 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CCONF_09190 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_11125 ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_02215 ssbB; Single-stranded DNA-binding protein SsbB K03111 ssb; single-strand DNA-binding protein
D CCONF_07735 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CCONF_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CCONF_08875 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CCONF_01160 dnaX2; DNA polymerase III subunit tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CCONF_05325 polC2; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_07670 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_00945 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_05150 polC1; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_00920 dnaX1; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CCONF_08195 pspA2; Phosphoserine phosphatase 1 K22316 rhnA-cobC; ribonuclease H / adenosylcobalamin/alpha-ribazole phosphatase [EC:3.1.26.4 3.1.3.73]
D CCONF_07390 rnhB; Ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CCONF_05515 polA2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CCONF_05155 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CCONF_08855 dpnM; Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CCONF_00070 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CCONF_00025 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CCONF_01145 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:ccou03036]
D CCONF_07530 rnc; Ribonuclease 3 K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CCONF_00005 dnaA; Chromosomal replication initiator protein DnaA K02313 dnaA; chromosomal replication initiator protein
D CCONF_05235 putative HTH-type transcriptional regulator K05596 iciA; LysR family transcriptional regulator, chromosome initiation inhibitor
D CCONF_07505 smc; Chromosome partition protein Smc K03529 smc; chromosome segregation protein
D CCONF_05740 scpA; Segregation and condensation protein A K05896 scpA; segregation and condensation protein A
D CCONF_05750 scpB; Segregation and condensation protein B K06024 scpB; segregation and condensation protein B
D CCONF_03460 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CCONF_07870 pbpB; Penicillin-binding protein PbpB K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CCONF_07105 spoIIIE; DNA translocase SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CCONF_07830 ftsQ; Cell division protein FtsQ K03589 ftsQ; cell division protein FtsQ
D CCONF_07845 ftsW2; Lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D CCONF_03465 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CCONF_07825 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CCONF_11405 lytC; N-acetylmuramoyl-L-alanine amidase LytC precursor K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CCONF_07810 sepF; Cell division protein SepF K09772 sepF; cell division inhibitor SepF
D CCONF_05735 soj1; Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D CCONF_11415 soj2; Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D CCONF_11410 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CCONF_11420 rsmG; Ribosomal RNA small subunit methyltransferase G K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CCONF_07365 xerC; Tyrosine recombinase XerC K03733 xerC; integrase/recombinase XerC
D CCONF_05730 xerD; Tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD
D CCONF_04705 ylxH; Flagellum site-determining protein YlxH K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CCONF_06335 whiA; Putative sporulation transcription regulator WhiA K09762 whiA; cell division protein WhiA
C 03400 DNA repair and recombination proteins [BR:ccou03400]
D CCONF_03900 ogt; Methylated-DNA--protein-cysteine methyltransferase, constitutive K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CCONF_05445 ung; Uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CCONF_00105 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
D CCONF_09900 mutY; A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
D CCONF_01055 pdg; Ultraviolet N-glycosylase/AP lyase K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CCONF_03545 Type III restriction enzyme, res subunit K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D CCONF_10250 hypothetical protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCONF_02900 nudG; CTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D CCONF_06820 dut; Deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D CCONF_00530 alkB; Alpha-ketoglutarate-dependent dioxygenase AlkB K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
D CCONF_03895 tag; DNA-3-methyladenine glycosylase 1 K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CCONF_07525 fpg1; Formamidopyrimidine-DNA glycosylase 1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CCONF_11145 nei1; Endonuclease 8 1 K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
D CCONF_03725 mutM; Formamidopyrimidine-DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
D CCONF_10210 xthA; Exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CCONF_02630 exoA; Exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CCONF_05155 ligA; DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CCONF_05515 polA2; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7]
D CCONF_05575 uvrA3; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D CCONF_01705 uvrA1; UvrABC system protein A K03701 uvrA; excinuclease ABC subunit A
D CCONF_05540 uvrB; UvrABC system protein B K03702 uvrB; excinuclease ABC subunit B
D CCONF_06350 uvrC; UvrABC system protein C K03703 uvrC; excinuclease ABC subunit C
D CCONF_03750 uvrD2; ATP-dependent DNA helicase UvrD1 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_03300 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_03315 uvrD1; ATP-dependent DNA helicase UvrD2 K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CCONF_01810 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CCONF_01815 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CCONF_02150 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CCONF_06415 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CCONF_04155 mfd; Transcription-repair-coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CCONF_04380 xseA; Exodeoxyribonuclease 7 large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CCONF_04375 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CCONF_07735 dnaE2; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CCONF_00010 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CCONF_08875 hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CCONF_01160 dnaX2; DNA polymerase III subunit tau K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CCONF_05325 polC2; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_07670 dnaQ1; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_00945 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_05150 polC1; DNA polymerase III PolC-type K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CCONF_00920 dnaX1; DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CCONF_09190 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_11125 ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_02215 ssbB; Single-stranded DNA-binding protein SsbB K03111 ssb; single-strand DNA-binding protein
D CCONF_08855 dpnM; Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CCONF_07050 recombinase A K03553 recA; recombination protein RecA
D CCONF_06660 ruvA; Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CCONF_06655 ruvB; Holliday junction ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CCONF_06665 ruvC; Crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CCONF_06400 priA; Primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CCONF_09885 hypothetical protein K04485 radA; DNA repair protein RadA/Sms
D CCONF_00015 recF; DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF
D CCONF_05455 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CCONF_08620 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O)
D CCONF_00930 recR; Recombination protein RecR K06187 recR; recombination protein RecR
D CCONF_05710 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CCONF_00070 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CCONF_00025 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CCONF_01145 topA; DNA topoisomerase 1 K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CCONF_07775 dinB; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D CCONF_06950 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88]
D CCONF_02475 DNA polymerase IV K14161 imuB; protein ImuB
D CCONF_02505 dnaE1; Error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D CCONF_07045 recX; Regulatory protein RecX K03565 recX; regulatory protein
D CCONF_09405 dinG; putative ATP-dependent helicase DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D CCONF_03720 putative ATP-dependent helicase Lhr K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
D CCONF_05420 mutT1; Putative mutator protein MutT4 K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D CCONF_05725 nudF; ADP-ribose pyrophosphatase K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D CCONF_09435 nrdE2; Ribonucleoside-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CCONF_02230 nrdE1; Ribonucleoside-diphosphate reductase subunit alpha 2 K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CCONF_09425 nrdF2; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_09745 nrdF3; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_02235 nrdF1; Ribonucleoside-diphosphate reductase subunit beta nrdF2 K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CCONF_07190 nrnA; Bifunctional oligoribonuclease and PAP phosphatase NrnA K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
C 03029 Mitochondrial biogenesis [BR:ccou03029]
D CCONF_07200 infB; Translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CCONF_05580 infC; Translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CCONF_07350 tsf; Elongation factor Ts K02357 tsf; elongation factor Ts
D CCONF_01885 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D CCONF_01880 fusA; Elongation factor G K02355 fusA; elongation factor G
D CCONF_08625 era; GTPase Era K03595 era; GTPase
D CCONF_05665 tyrS; Tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CCONF_11225 leuS; Leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CCONF_06545 aspS; Aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CCONF_08595 glyQS; Glycine--tRNA ligase K01880 GARS; glycyl-tRNA synthetase [EC:6.1.1.14]
D CCONF_04875 argS; Arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CCONF_05220 gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CCONF_05175 gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CCONF_09190 ssb1; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_11125 ssb2; Single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein
D CCONF_02215 ssbB; Single-stranded DNA-binding protein SsbB K03111 ssb; single-strand DNA-binding protein
D CCONF_10430 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CCONF_10425 heat shock protein GrpE K03687 GRPE; molecular chaperone GrpE
D CCONF_10130 groL2; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_02390 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_02385 groS; 10 kDa chaperonin K04078 groES; chaperonin GroES
D CCONF_08650 dnaJ1; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CCONF_10420 dnaJ2; Chaperone protein DnaJ K03686 dnaJ; molecular chaperone DnaJ
D CCONF_05120 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CCONF_04705 ylxH; Flagellum site-determining protein YlxH K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CCONF_06285 ctaB; Protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141]
D CCONF_06275 ctaA; Heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9]
D CCONF_10980 misCA; Membrane protein insertase MisCA precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_11425 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:ccou02000]
D CCONF_10560 irtA2; Iron import ATP-binding/permease protein IrtA K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CCONF_10605 irtA3; Iron import ATP-binding/permease protein IrtA K14698 irtA; ATP-binding cassette, subfamily B, bacterial IrtA/YbtP [EC:7.-.-.-]
D CCONF_10555 irtB1; Iron import ATP-binding/permease protein IrtB K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CCONF_10600 irtB2; Iron import ATP-binding/permease protein IrtB K14699 irtB; ATP-binding cassette, subfamily B, bacterial IrtB/YbtQ [EC:7.-.-.-]
D CCONF_10490 putative ABC transporter ATP-binding protein K18887 efrA; ATP-binding cassette, subfamily B, multidrug efflux pump
D CCONF_10495 putative ABC transporter ATP-binding protein K18888 efrB; ATP-binding cassette, subfamily B, multidrug efflux pump
D CCONF_08730 Putative multidrug export ATP-binding/permease protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial
D CCONF_03970 putative ABC transporter ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D CCONF_00285 putative ABC transporter ATP-binding protein K02021 ABC.MR; putative ABC transport system ATP-binding protein
D CCONF_04905 modA; Molybdate-binding periplasmic protein precursor K02020 modA; molybdate transport system substrate-binding protein
D CCONF_04900 cysW; Sulfate transport system permease protein CysW K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CCONF_11255 fbpA4; Iron-utilization periplasmic protein precursor K02012 afuA; iron(III) transport system substrate-binding protein
D CCONF_11250 malF; Maltose transport system permease protein MalF K02011 afuB; iron(III) transport system permease protein
D CCONF_11245 potA; Spermidine/putrescine import ATP-binding protein PotA K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CCONF_01390 Bacterial extracellular solute-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein
D CCONF_01380 hypothetical protein K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CCONF_01385 spermidine/putrescine ABC transporter membrane protein K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CCONF_01375 cysA; Sulfate/thiosulfate import ATP-binding protein CysA K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CCONF_02030 gbuC; Glycine betaine/carnitine transport binding protein GbuC precursor K02002 proX; glycine betaine/proline transport system substrate-binding protein
D CCONF_02035 opuAB; Glycine betaine transport system permease protein OpuAB K02001 proW; glycine betaine/proline transport system permease protein
D CCONF_02040 opuAA; Glycine betaine transport ATP-binding protein OpuAA K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9]
D CCONF_08335 osmF; Putative osmoprotectant uptake system substrate-binding protein OsmF precursor K05845 opuC; osmoprotectant transport system substrate-binding protein
D CCONF_08320 opuBB1; Choline transport system permease protein OpuBB K05846 opuBD; osmoprotectant transport system permease protein
D CCONF_08330 opuBB2; Choline transport system permease protein OpuBB K05846 opuBD; osmoprotectant transport system permease protein
D CCONF_08325 opuCA; Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CCONF_05945 sugC; Trehalose import ATP-binding protein SugC K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CCONF_02815 lpqY; Trehalose-binding lipoprotein LpqY precursor K10236 thuE; trehalose/maltose transport system substrate-binding protein
D CCONF_02810 sugA; Trehalose transport system permease protein SugA K10237 thuF; trehalose/maltose transport system permease protein
D CCONF_02805 sugB; Trehalose transport system permease protein SugB K10238 thuG; trehalose/maltose transport system permease protein
D CCONF_02920 rbsB; D-ribose-binding periplasmic protein precursor K10439 rbsB; ribose transport system substrate-binding protein
D CCONF_02925 rbsC; Ribose transport system permease protein RbsC K10440 rbsC; ribose transport system permease protein
D CCONF_02930 araG; Arabinose import ATP-binding protein AraG K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7]
D CCONF_09620 pstS2; Phosphate-binding protein PstS 2 precursor K02040 pstS; phosphate transport system substrate-binding protein
D CCONF_09615 pstC; Phosphate transport system permease protein PstC K02037 pstC; phosphate transport system permease protein
D CCONF_09610 pstA; Phosphate transport system permease protein PstA K02038 pstA; phosphate transport system permease protein
D CCONF_09605 pstB3; Phosphate import ATP-binding protein PstB 3 K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CCONF_01250 metQ1; D-methionine-binding lipoprotein MetQ precursor K02073 metQ; D-methionine transport system substrate-binding protein
D CCONF_02500 metQ2; D-methionine-binding lipoprotein MetQ precursor K02073 metQ; D-methionine transport system substrate-binding protein
D CCONF_02490 metI; D-methionine transport system permease protein MetI K02072 metI; D-methionine transport system permease protein
D CCONF_02495 metN2; Methionine import ATP-binding protein MetN 2 K02071 metN; D-methionine transport system ATP-binding protein
D CCONF_05505 glnH1; Glutamine-binding periplasmic protein precursor K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CCONF_10260 glnH2; ABC transporter glutamine-binding protein GlnH precursor K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CCONF_05500 yecS; Inner membrane amino-acid ABC transporter permease protein YecS K02029 ABC.PA.P; polar amino acid transport system permease protein
D CCONF_05495 glnQ; Glutamine transport ATP-binding protein GlnQ K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1]
D CCONF_06635 Bacterial extracellular solute-binding protein, family 5 K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CCONF_08760 gsiB1; Glutathione-binding protein GsiB precursor K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CCONF_09125 gsiB2; Glutathione-binding protein GsiB precursor K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein
D CCONF_08765 nikB; Nickel transport system permease protein NikB K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CCONF_09120 gsiC; Glutathione transport system permease protein GsiC K02033 ABC.PE.P; peptide/nickel transport system permease protein
D CCONF_08770 gsiD; Glutathione transport system permease protein GsiD K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CCONF_09115 ddpC; putative D,D-dipeptide transport system permease protein DdpC K02034 ABC.PE.P1; peptide/nickel transport system permease protein
D CCONF_08775 gsiA2; Glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CCONF_09110 gsiA3; Glutathione import ATP-binding protein GsiA K02031 ddpD; peptide/nickel transport system ATP-binding protein
D CCONF_01415 hmuT; Hemin-binding periplasmic protein HmuT precursor K25132 hmuT; heme transport system substrate-binding protein
D CCONF_01420 hmuU1; Hemin transport system permease protein HmuU K25133 hmuU; heme transport system permease protein
D CCONF_01425 hmuV; Hemin import ATP-binding protein HmuV K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5]
D CCONF_01685 yfiY1; putative siderophore-binding lipoprotein YfiY precursor K25286 fagD; iron-siderophore transport system substrate-binding protein
D CCONF_02615 yfiY2; putative siderophore-binding lipoprotein YfiY precursor K25286 fagD; iron-siderophore transport system substrate-binding protein
D CCONF_00315 yfmC; Fe(3+)-citrate-binding protein YfmC precursor K25286 fagD; iron-siderophore transport system substrate-binding protein
D CCONF_00335 yfiZ1; putative siderophore transport system permease protein YfiZ precursor K23186 fepD; iron-siderophore transport system permease protein
D CCONF_01680 fepD; Ferric enterobactin transport system permease protein FepD K23186 fepD; iron-siderophore transport system permease protein
D CCONF_00330 yfhA1; putative siderophore transport system permease protein YfhA K23187 fepG; iron-siderophore transport system permease protein
D CCONF_01675 fepG; Ferric enterobactin transport system permease protein FepG K23187 fepG; iron-siderophore transport system permease protein
D CCONF_00325 yusV1; putative siderophore transport system ATP-binding protein YusV K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D CCONF_01670 yusV2; putative siderophore transport system ATP-binding protein YusV K23188 fepC; iron-siderophore transport system ATP-binding protein [EC:7.2.2.17 7.2.2.-]
D CCONF_03500 feuC; Iron-uptake system permease protein FeuC K25283 yclO; iron-siderophore transport system permease protein
D CCONF_03495 feuB; Iron-uptake system permease protein FeuB K25284 yclN; iron-siderophore transport system permease protein
D CCONF_03505 fhuC1; Iron(3+)-hydroxamate import ATP-binding protein FhuC K25285 yclP; iron-siderophore transport system ATP-binding protein [EC:7.2.2.-]
D CCONF_03490 yclQ; putative ABC transporter solute-binding protein YclQ precursor K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CCONF_11220 corrinoid ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CCONF_11215 hmuU2; Hemin transport system permease protein HmuU K02015 ABC.FEV.P; iron complex transport system permease protein
D CCONF_02605 yfhA2; putative siderophore transport system permease protein YfhA K02015 ABC.FEV.P; iron complex transport system permease protein
D CCONF_02610 yfiZ2; putative siderophore transport system permease protein YfiZ precursor K02015 ABC.FEV.P; iron complex transport system permease protein
D CCONF_05095 ylmA; putative ABC transporter ATP-binding protein YlmA K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CCONF_11210 fhuC2; Iron(3+)-hydroxamate import ATP-binding protein FhuC K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CCONF_02600 yusV3; putative siderophore transport system ATP-binding protein YusV K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CCONF_01640 troA; Periplasmic zinc-binding protein TroA precursor K11707 troA; manganese/zinc/iron transport system substrate-binding protein
D CCONF_01630 mntB2; Manganese transport system membrane protein MntB K11708 troC; manganese/zinc/iron transport system permease protein
D CCONF_01625 mntB1; Manganese transport system membrane protein MntB K11709 troD; manganese/zinc/iron transport system permease protein
D CCONF_01635 znuC1; Zinc import ATP-binding protein ZnuC K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5]
D CCONF_05345 mntB3; Manganese transport system membrane protein MntB K09819 ABC.MN.P; manganese/iron transport system permease protein
D CCONF_05350 znuC2; High-affinity zinc uptake system ATP-binding protein ZnuC K09820 ABC.MN.A; manganese/iron transport system ATP-binding protein
D CCONF_07060 bioY; Biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component
D CCONF_07070 bioN; Energy-coupling factor transporter transmembrane protein BioN K16783 bioN; biotin transport system permease protein
D CCONF_07065 bioM; Biotin transport ATP-binding protein BioM K16784 bioM; biotin transport system ATP-binding protein [EC:7.6.2.-]
D CCONF_06175 hypothetical protein K16923 qrtT; energy-coupling factor transport system substrate-specific component
D CCONF_10550 hypothetical protein K16926 htsT; energy-coupling factor transport system substrate-specific component
D CCONF_10585 hypothetical protein K16926 htsT; energy-coupling factor transport system substrate-specific component
D CCONF_06170 hypothetical protein K16785 ecfT; energy-coupling factor transport system permease protein
D CCONF_10545 ecfT1; Energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D CCONF_10590 ecfT2; Energy-coupling factor transporter transmembrane protein EcfT K16785 ecfT; energy-coupling factor transport system permease protein
D CCONF_01850 ykoC; Putative HMP/thiamine permease protein YkoC K16785 ecfT; energy-coupling factor transport system permease protein
D CCONF_10540 ykoD2; Putative HMP/thiamine import ATP-binding protein YkoD K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CCONF_10595 ykoD3; Putative HMP/thiamine import ATP-binding protein YkoD K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CCONF_01845 ykoD1; Putative HMP/thiamine import ATP-binding protein YkoD K01552 ecfA; energy-coupling factor transport system ATP-binding protein [EC:7.-.-.-]
D CCONF_01840 ykoE; Putative HMP/thiamine permease protein YkoE K16925 ykoE; energy-coupling factor transport system permease protein
D CCONF_09820 ssaB; Manganese ABC transporter substrate-binding lipoprotein precursor K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein
D CCONF_09830 znuB; High-affinity zinc uptake system membrane protein ZnuB K02075 ABC.ZM.P; zinc/manganese transport system permease protein
D CCONF_09825 putative ABC transporter ATP-binding protein K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein
D CCONF_00695 tagG; Teichoic acid translocation permease protein TagG K09690 wzm; homopolymeric O-antigen transport system permease protein
D CCONF_00690 tagH1; Teichoic acids export ATP-binding protein TagH K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D CCONF_08480 ABC-2 type transporter K09692 tagG; teichoic acid transport system permease protein
D CCONF_08475 tagH2; Teichoic acids export ATP-binding protein TagH K09693 tagH; teichoic acid transport system ATP-binding protein [EC:7.5.2.4]
D CCONF_03405 ABC-2 family transporter protein K20491 nisE; lantibiotic transport system permease protein
D CCONF_03410 yxlF1; putative ABC transporter ATP-binding protein YxlF K20490 nisF; lantibiotic transport system ATP-binding protein
D CCONF_11165 FtsX-like permease family protein K09813 hrtB; hemin transport system permease protein
D CCONF_11160 ytrE3; ABC transporter ATP-binding protein YtrE K09814 hrtA; hemin transport system ATP-binding protein [EC:7.6.2.-]
D CCONF_03465 ftsX; Cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CCONF_03460 ftsE; Cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CCONF_03550 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CCONF_06270 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D CCONF_07315 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CCONF_10240 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CCONF_10630 drrB; Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB K01992 ABC-2.P; ABC-2 type transport system permease protein
D CCONF_10635 ABC-2 type transporter K01992 ABC-2.P; ABC-2 type transport system permease protein
D CCONF_01830 ABC-2 family transporter protein K01992 ABC-2.P; ABC-2 type transport system permease protein
D CCONF_03555 yxlF2; putative ABC transporter ATP-binding protein YxlF K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_06265 drrA2; Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_07320 drrA3; Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_10245 yxlF3; putative ABC transporter ATP-binding protein YxlF K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_10625 drrA4; Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_11030 ytrB; ABC transporter ATP-binding protein YtrB K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_00220 thiQ; Thiamine import ATP-binding protein ThiQ K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_00900 phnT; Putative 2-aminoethylphosphonate import ATP-binding protein PhnT K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_01835 drrA1; Daunorubicin/doxorubicin resistance ATP-binding protein DrrA K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CCONF_09165 FtsX-like permease family protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CCONF_09510 ytrF; ABC transporter permease YtrF precursor K02004 ABC.CD.P; putative ABC transport system permease protein
D CCONF_02440 macB1; Macrolide export ATP-binding/permease protein MacB K02004 ABC.CD.P; putative ABC transport system permease protein
D CCONF_04435 macB3; Macrolide export ATP-binding/permease protein MacB K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CCONF_06985 ytrE2; ABC transporter ATP-binding protein YtrE K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CCONF_09160 bceA2; Bacitracin export ATP-binding protein BceA K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CCONF_09515 putative ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CCONF_00040 bceA1; Bacitracin export ATP-binding protein BceA K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CCONF_02095 ytrE1; ABC transporter ATP-binding protein YtrE K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CCONF_02445 macB2; Macrolide export ATP-binding/permease protein MacB K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CCONF_06240 hypothetical protein K09013 sufC; Fe-S cluster assembly ATP-binding protein
D CCONF_11335 Sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D CCONF_00775 sdcS; Sodium-dependent dicarboxylate transporter SdcS K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D CCONF_07185 dinF; DNA-damage-inducible protein F K26937 dinF; MATE family, multidrug efflux pump
D CCONF_09455 iolT; Major myo-inositol transporter IolT K06609 iolT; MFS transporter, SP family, major inositol transporter
D CCONF_04955 narK; Nitrate/nitrite transporter NarK K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter
D CCONF_10230 bcr1; Bicyclomycin resistance protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D CCONF_02620 ydhP1; Inner membrane transport protein YdhP K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D CCONF_02625 ydhP2; Inner membrane transport protein YdhP K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein
D CCONF_09775 qacA2; Antiseptic resistance protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
D CCONF_04250 emrB; Multidrug export protein EmrB K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D CCONF_09935 emrY; putative multidrug resistance protein EmrY K18926 lmrB; MFS transporter, DHA2 family, lincomycin resistance protein
D CCONF_10935 ynfM; Inner membrane transport protein YnfM K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D CCONF_11065 naiP; Putative niacin/nicotinamide transporter NaiP K08369 ydjE; MFS transporter, putative metabolite:H+ symporter
D CCONF_06960 ptsI; Phosphoenolpyruvate-protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9]
D CCONF_06975 ptsH; Phosphocarrier protein HPr K02784 ptsH; phosphocarrier protein HPr
D CCONF_09860 glcB; PTS system glucoside-specific EIICBA component K02804 nagE; N-acetylglucosamine PTS system EIICBA or EIICB component [EC:2.7.1.193]
D CCONF_05530 bglF; PTS system beta-glucoside-specific EIIBCA component K02757 bglF; beta-glucoside PTS system EIICBA component [EC:2.7.1.-]
D CCONF_06970 fruA; PTS system fructose-specific EIIABC component K02770 fruA; fructose PTS system EIIBC or EIIC component [EC:2.7.1.202]
D CCONF_03035 manP; PTS system mannose-specific EIIBCA component K25814 manP; mannose PTS system EIIBCA component [EC:2.7.1.191]
D CCONF_02955 ulaA; Ascorbate-specific permease IIC component UlaA K03475 ulaA; ascorbate PTS system EIIC component
D CCONF_03305 kch; Voltage-gated potassium channel Kch K10716 kch; voltage-gated potassium channel
D CCONF_03535 von Willebrand factor type A domain protein K07114 yfbK; Ca-activated chloride channel homolog
D CCONF_03860 mscL; Large-conductance mechanosensitive channel K03282 mscL; large conductance mechanosensitive channel
D CCONF_08290 ykuT1; putative MscS family protein YkuT K22044 ybiO; moderate conductance mechanosensitive channel
D CCONF_09140 ykuT2; putative MscS family protein YkuT K22044 ybiO; moderate conductance mechanosensitive channel
D CCONF_00770 Magnesium transporter MgtE K06213 mgtE; magnesium transporter
D CCONF_05885 corA; Magnesium transport protein CorA K03284 corA; magnesium transporter
D CCONF_08665 tlyC; Hemolysin C K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CCONF_08670 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CCONF_05650 aroP; Aromatic amino acid transport protein AroP K11738 ansP; L-asparagine permease
D CCONF_04630 gabP2; GABA permease K16237 aroP; aromatic amino acid permease
D CCONF_04620 gabP1; GABA permease K16237 aroP; aromatic amino acid permease
D CCONF_04165 arcD; Arginine/ornithine antiporter K03758 arcD; arginine:ornithine antiporter / lysine permease
D CCONF_05290 czcD; Cadmium, cobalt and zinc/H(+)-K(+) antiporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D CCONF_04545 zupT; Zinc transporter ZupT K07238 TC.ZIP; zinc transporter, ZIP family
D CCONF_10725 ydfJ3; Membrane protein YdfJ K20470 mmpL3; trehalose monomycolate/heme transporter
D CCONF_00610 mdtJ; Spermidine export protein MdtJ K03297 emrE; small multidrug resistance pump
D CCONF_00615 ebrB; Multidrug resistance protein EbrB K03297 emrE; small multidrug resistance pump
D CCONF_01560 sugE; Quaternary ammonium compound-resistance protein SugE K11741 sugE; quaternary ammonium compound-resistance protein SugE
D CCONF_07740 EamA-like transporter family protein K05786 rarD; chloramphenicol-sensitive protein RarD
D CCONF_03740 Na+/H+ antiporter family protein K07084 yuiF; putative amino acid transporter
D CCONF_02945 ygbN; Inner membrane permease YgbN K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D CCONF_06050 dcuA; Anaerobic C4-dicarboxylate transporter DcuA K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D CCONF_09085 dcuB; Anaerobic C4-dicarboxylate transporter DcuB K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CCONF_04870 glcA; Glycolate permease GlcA K03303 lutP; lactate permease
D CCONF_00570 betT; High-affinity choline transport protein K02168 betT; choline/glycine/proline betaine transport protein
D CCONF_04795 putP; Sodium/proline symporter K11928 putP; sodium/proline symporter
D CCONF_03640 actP; Cation/acetate symporter ActP K14393 actP; cation/acetate symporter
D CCONF_10370 hypothetical protein K03312 gltS; glutamate:Na+ symporter, ESS family
D CCONF_00845 nhaK; Sodium, potassium, lithium and rubidium/H(+) antiporter K24163 nhaK; monovalent cation/hydrogen antiporter
D CCONF_09335 uacT; Uric acid transporter UacT K24206 uacT; uric acid transporter
D CCONF_03595 pbuG; Guanine/hypoxanthine permease PbuG K06901 pbuG; adenine/guanine/hypoxanthine permease
D CCONF_04125 sdaC2; Serine transporter K03837 sdaC; serine transporter
D CCONF_05790 sdaC3; Serine transporter K03837 sdaC; serine transporter
D CCONF_10290 sdaC4; Serine transporter K03837 sdaC; serine transporter
D CCONF_02430 sdaC1; Serine transporter K03837 sdaC; serine transporter
D CCONF_04550 clcA2; H(+)/Cl(-) exchange transporter ClcA K03281 clcA; chloride channel protein, CIC family
D CCONF_00245 bicA; Bicarbonate transporter BicA K03321 TC.SULP; sulfate permease, SulP family
D CCONF_00480 dauA; C4-dicarboxylic acid transporter DauA K03321 TC.SULP; sulfate permease, SulP family
D CCONF_10025 arsA; Arsenical pump-driving ATPase K01551 arsA; arsenite/tail-anchored protein-transporting ATPase [EC:7.3.2.7 7.3.-.-]
D CCONF_03510 Sodium Bile acid symporter family protein K03325 ACR3; arsenite transporter
D CCONF_08220 Sodium Bile acid symporter family protein K03325 ACR3; arsenite transporter
D CCONF_07495 mrpA1; Na(+)/H(+) antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D CCONF_10150 mrpA2; Na(+)/H(+) antiporter subunit A K05565 mnhA; multicomponent Na+:H+ antiporter subunit A
D CCONF_07490 mnhC1; Na(+)/H(+) antiporter subunit C1 K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D CCONF_10155 mrpC; Na(+)/H(+) antiporter subunit C K05567 mnhC; multicomponent Na+:H+ antiporter subunit C
D CCONF_07485 mrpD1; Na(+)/H(+) antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D CCONF_10160 mrpD2; Na(+)/H(+) antiporter subunit D K05568 mnhD; multicomponent Na+:H+ antiporter subunit D
D CCONF_07480 putative monovalent cation/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D CCONF_10165 putative monovalent cation/H+ antiporter subunit E K05569 mnhE; multicomponent Na+:H+ antiporter subunit E
D CCONF_10170 putative monovalent cation/H+ antiporter subunit F K05570 mnhF; multicomponent Na+:H+ antiporter subunit F
D CCONF_07470 putative monovalent cation/H+ antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D CCONF_10175 mrpG; Na(+)/H(+) antiporter subunit G K05571 mnhG; multicomponent Na+:H+ antiporter subunit G
D CCONF_11375 mviN; putative peptidoglycan biosynthesis protein MviN K03980 murJ; putative peptidoglycan lipid II flippase
D CCONF_01615 Membrane transport protein K13936 mdcF; malonate transporter and related proteins
D CCONF_05230 argO; Arginine exporter protein ArgO K06895 lysE; L-lysine exporter family protein LysE/ArgO
D CCONF_08865 rhtC3; Threonine efflux protein K05835 rhtC; threonine efflux protein
D CCONF_00580 rhtC1; Threonine efflux protein K05835 rhtC; threonine efflux protein
D CCONF_00585 rhtC2; Threonine efflux protein K05835 rhtC; threonine efflux protein
D CCONF_11350 ygaZ; Inner membrane protein YgaZ K26605 azlC; branched chain amino acid efflux pump
D CCONF_11345 Branched-chain amino acid transport protein (AzlD) K26606 azlD; branched chain amino acid efflux pump
D CCONF_00835 yhhQ; Inner membrane protein YhhQ K09125 yhhQ; queuosine precursor transporter
D CCONF_08610 VIT family protein K22736 VIT; vacuolar iron transporter family protein
D CCONF_07845 ftsW2; Lipid II flippase FtsW K03588 ftsW; cell division protein FtsW
D CCONF_01585 Cytochrome C biogenesis protein transmembrane region K06196 ccdA; cytochrome c-type biogenesis protein
D CCONF_04950 narG; Nitrate reductase alpha subunit K00370 narG; nitrate reductase / nitrite oxidoreductase, alpha subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_04945 narY; Respiratory nitrate reductase 2 beta chain K00371 narH; nitrate reductase / nitrite oxidoreductase, beta subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_04935 narX2; Nitrate reductase-like protein NarX K00374 narI; nitrate reductase gamma subunit [EC:1.7.5.1 1.7.99.-]
D CCONF_02450 macA; Macrolide export protein MacA K13888 macA; membrane fusion protein, macrolide-specific efflux system
D CCONF_10730 hypothetical protein K20468 K20468; putative heme transporter
D CCONF_06730 hypothetical protein K07156 copC; copper resistance protein C
C 02044 Secretion system [BR:ccou02044]
D CCONF_01100 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
D CCONF_01105 hypothetical protein K12510 tadB; tight adherence protein B
D CCONF_07805 YGGT family protein K02221 yggT; YggT family protein
D CCONF_08885 comEA; ComE operon protein 1 K02237 comEA; competence protein ComEA
D CCONF_02270 eccCb1; ESX-1 secretion system protein EccCb1 K27086 eccC; ESX secretion system protein EccC
D CCONF_02175 hypothetical protein K27087 eccD; ESX secretion system protein EccD
D CCONF_02170 apr; Subtilisin K14743 mycP; membrane-anchored mycosin MYCP [EC:3.4.21.-]
D CCONF_02280 WXG domain conatining protein K14956 esx; ESAT-6 family protein
D CCONF_02285 esxA; 6 kDa early secretory antigenic target K14956 esx; ESAT-6 family protein
D CCONF_05835 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CCONF_03205 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CCONF_06645 preprotein translocase subunit SecD K03072 secD; preprotein translocase subunit SecD
D CCONF_01770 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE
D CCONF_06640 preprotein translocase subunit SecF K03074 secF; preprotein translocase subunit SecF
D CCONF_06315 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG
D CCONF_02110 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY
D CCONF_07455 ffh; Signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CCONF_07500 ftsY; Signal recognition particle receptor FtsY K03110 ftsY; fused signal recognition particle receptor
D CCONF_06650 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CCONF_10980 misCA; Membrane protein insertase MisCA precursor K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_11425 yidC; Membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CCONF_05995 tatAy; Sec-independent protein translocase protein TatAy K03116 tatA; sec-independent protein translocase protein TatA
D CCONF_04700 sec-independent translocase K03117 tatB; sec-independent protein translocase protein TatB
D CCONF_05990 tatC; Sec-independent protein translocase protein TatC K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:ccou02042]
D CCONF_08665 tlyC; Hemolysin C K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CCONF_08670 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CCONF_09685 hemeolysin-III related K11068 hlyIII; hemolysin III
C 02022 Two-component system [BR:ccou02022]
D CCONF_01465 senX3; Signal-transduction histidine kinase senX3 K07768 senX3; two-component system, OmpR family, sensor histidine kinase SenX3 [EC:2.7.13.3]
D CCONF_01470 regX3; Sensory transduction protein regX3 K07776 regX3; two-component system, OmpR family, response regulator RegX3
D CCONF_03840 mprB; Signal transduction histidine-protein kinase/phosphatase MprB K07653 mprB; two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
D CCONF_03835 mprA; Response regulator MprA K07669 mprA; two-component system, OmpR family, response regulator MprA
D CCONF_03185 mtrB; Sensor histidine kinase MtrB K07654 mtrB; two-component system, OmpR family, sensor histidine kinase MtrB [EC:2.7.13.3]
D CCONF_03180 mtrA; DNA-binding response regulator MtrA K07670 mtrA; two-component system, OmpR family, response regulator MtrA
D CCONF_09760 tcrY; putative sensor histidine kinase TcrY K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CCONF_09765 tcrX; putative transcriptional regulatory protein TcrX K02483 K02483; two-component system, OmpR family, response regulator
D CCONF_01825 desK1; Sensor histidine kinase DesK K07778 desK; two-component system, NarL family, sensor histidine kinase DesK [EC:2.7.13.3]
D CCONF_01820 vraR1; Response regulator protein VraR K07693 desR; two-component system, NarL family, response regulator DesR
C 02035 Bacterial motility proteins [BR:ccou02035]
D CCONF_01100 Putative conjugal transfer protein K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:ccou04812]
D CCONF_07825 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CCONF_05735 soj1; Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D CCONF_11415 soj2; Sporulation initiation inhibitor protein Soj K03496 parA; chromosome partitioning protein
D CCONF_11410 parB; putative chromosome-partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:ccou04147]
D CCONF_04180 eno; Enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CCONF_04065 gap1; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CCONF_06330 gap2; Glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CCONF_06325 pgk; Phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CCONF_07575 pyk; Pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CCONF_00140 ppiA; Peptidyl-prolyl cis-trans isomerase A K03767 PPIA; peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
D CCONF_10130 groL2; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_02390 groL1; 60 kDa chaperonin 1 K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CCONF_10430 dnaK; Chaperone protein DnaK K04043 dnaK; molecular chaperone DnaK
D CCONF_03735 pgi; Glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CCONF_02420 guaB; Inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CCONF_02425 putative oxidoreductase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CCONF_01885 tuf; Elongation factor Tu K02358 tuf; elongation factor Tu
D CCONF_10285 ldh; L-lactate dehydrogenase K00016 LDH; L-lactate dehydrogenase [EC:1.1.1.27]
D CCONF_11335 Sodium Bile acid symporter family protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7
D CCONF_08695 Long-chain-fatty-acid--CoA ligase FadD15 K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01445 fadD1; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_01450 fadD2; Long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CCONF_02115 adk; Adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CCONF_06630 apt; Adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CCONF_05645 argH; Argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CCONF_05640 argG; Argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CCONF_03395 galK; Galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CCONF_08180 galactokinase K00849 galK; galactokinase [EC:2.7.1.6]
D CCONF_05085 glgB; 1,4-alpha-glucan branching enzyme GlgB K00700 GBE1; 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
D CCONF_10835 glpK; Glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30]
D CCONF_08085 glnA1; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08160 glnA2; putative glutamine synthetase 2 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08380 glnA3; Glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_08535 glnA4; Glutamine synthetase 1 K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CCONF_01530 hemB; Delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CCONF_03030 phoB; Alkaline phosphatase 3 precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
D CCONF_05305 serA; D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CCONF_03775 purH; Bifunctional purine biosynthesis protein PurH K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CCONF_01245 lpd; Dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4]
D CCONF_05115 etfA; Electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit
D CCONF_06300 zwf; Glucose-6-phosphate 1-dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
D CCONF_06320 tpiA; Triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CCONF_01460 gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11]
C 02048 Prokaryotic defense system [BR:ccou02048]
D CCONF_05805 hsdR; Type I restriction enzyme R protein K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CCONF_05810 Restriction-modification system protein HsdS K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CCONF_05815 hsdM; Type I restriction enzyme M protein K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CCONF_02190 bcgIA; Restriction enzyme BgcI subunit alpha K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CCONF_08855 dpnM; Modification methylase DpnIIA K06223 dam; DNA adenine methylase [EC:2.1.1.72]
D CCONF_03670 Type III restriction enzyme, res subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D CCONF_03675 mboIIM; Modification methylase MboII K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CCONF_07825 ftsZ; Cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CCONF_05375 gltX2; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_00840 gltX1; Glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CCONF_05120 iscS; Cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:ccou01504]
D CCONF_09775 qacA2; Antiseptic resistance protein K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:ccou00537]
D CCONF_03030 phoB; Alkaline phosphatase 3 precursor K01077 E3.1.3.1; alkaline phosphatase [EC:3.1.3.1]
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CCONF_01180 S-(hydroxymethyl)mycothiol dehydrogenase K00153 E1.1.1.306; S-(hydroxymethyl)mycothiol dehydrogenase [EC:1.1.1.306]
D CCONF_00650 phbB; Acetoacetyl-CoA reductase K16652 dprE2; decaprenylphospho-beta-D-erythro-pentofuranosid-2-ulose 2-reductase [EC:1.1.1.333]
D CCONF_09050 dkgA; 2,5-diketo-D-gluconic acid reductase A K06221 dkgA; 2,5-diketo-D-gluconate reductase A [EC:1.1.1.346]
D CCONF_00655 dprE1; putative decaprenylphosphoryl-beta-D-ribose oxidase K16653 dprE1; decaprenylphospho-beta-D-ribofuranose 2-oxidase [EC:1.1.98.3]
D CCONF_01735 Putative oxidoreductase K21401 menJ; menaquinone-9 beta-reductase [EC:1.3.99.38]
D CCONF_02705 lpdA; NAD(P)H dehydrogenase (quinone) K23842 lpdA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2]
D CCONF_06280 qorA; Quinone oxidoreductase 1 K00344 qor; NADPH:quinone reductase [EC:1.6.5.5]
D CCONF_07265 mtr; Mycothione reductase K17883 mtr; mycothione reductase [EC:1.8.1.15]
D CCONF_10910 msrA; Peptide methionine sulfoxide reductase MsrA K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
D CCONF_06780 msrB; Peptide methionine sulfoxide reductase MsrB K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
D CCONF_06720 efeN; putative deferrochelatase/peroxidase EfeN precursor K15733 E1.11.1.19; dye decolorizing peroxidase [EC:1.11.1.19]
D CCONF_09285 bcp; Putative peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CCONF_06600 tpx; putative thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CCONF_06915 ahpD; Alkyl hydroperoxide reductase AhpD K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28]
D CCONF_06920 Alkyl hydroperoxide reductase subunit C K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28]
D CCONF_08540 yfeX; putative deferrochelatase/peroxidase YfeX K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D CCONF_00290 pvdA; L-ornithine 5-monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196]
D CCONF_00485 ftnA; Ferritin K02217 ftnA; ferritin [EC:1.16.3.2]
D CCONF_10300 fprA; NADPH-ferredoxin reductase FprA K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1]
D CCONF_03700 mrx1; Mycoredoxin 1 K18917 mrx1; mycoredoxin [EC:1.20.4.3]
D CCONF_09320 pflA; Pyruvate formate-lyase 1-activating enzyme K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CCONF_05915 cyclopropane fatty acyl phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D CCONF_02300 cfa; Cyclopropane-fatty-acyl-phospholipid synthase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
D CCONF_10620 Putative acetyltransferase K00633 lacA; galactoside O-acetyltransferase [EC:2.3.1.18]
D CCONF_09625 mshD2; Mycothiol acetyltransferase K15520 mshD; mycothiol synthase [EC:2.3.1.189]
D CCONF_05955 lnt; Apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D CCONF_00855 hypothetical protein K03824 yhbS; putative acetyltransferase [EC:2.3.1.-]
D CCONF_03940 yncA; N-acyltransferase YncA K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-]
D CCONF_10685 oatA3; O-acetyltransferase OatA K27307 tmaT; acetyltransferase [EC:2.3.1.-]
D CCONF_03585 Glutamine cyclotransferase K22757 QCT; glutaminyl-peptide cyclotransferase [EC:2.3.2.5]
D CCONF_01455 mshA; D-inositol 3-phosphate glycosyltransferase K15521 mshA; D-inositol-3-phosphate glycosyltransferase [EC:2.4.1.250]
D CCONF_07580 lgt; Prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CCONF_05450 DAK2 domain protein K07030 fakA; fatty acid kinase [EC:2.7.2.18]
D CCONF_10810 ppsR; Phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33]
D CCONF_08155 glnE; Glutamate-ammonia-ligase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89]
D CCONF_07250 hypothetical protein K08997 SELENOO; protein adenylyltransferase [EC:2.7.7.108]
D CCONF_04725 pnbA; Para-nitrobenzyl esterase K03929 pnbA; para-nitrobenzyl esterase [EC:3.1.1.-]
D CCONF_10760 Cutinase K27360 cut6; phospholipase A/thioesterase [EC:3.1.1.-]
D CCONF_09180 fadM; Long-chain acyl-CoA thioesterase FadM K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CCONF_08895 gpgP; Glucosyl-3-phosphoglycerate phosphatase K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85]
D CCONF_03945 ycfH; putative deoxyribonuclease YcfH K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CCONF_05065 hypothetical protein K07503 nucS; endonuclease [EC:3.1.-.-]
D CCONF_06395 def1; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CCONF_10200 def2; Peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CCONF_04580 mshB; 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase K15525 mshB; N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase [EC:3.5.1.103]
D CCONF_04290 mca1; Mycothiol S-conjugate amidase K18455 mca; mycothiol S-conjugate amidase [EC:3.5.1.115]
D CCONF_10395 2-oxoglutaramate amidase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D CCONF_03400 yxeP3; putative hydrolase YxeP K23726 agaA; Nalpha-acyl-L-glutamine aminoacylase [EC:3.5.1.133]
D CCONF_11150 nnr; Bifunctional NAD(P)H-hydrate repair enzyme Nnr K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CCONF_06080 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase K15526 mshC; L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [EC:6.3.1.13]
D CCONF_10745 accD3; putative propionyl-CoA carboxylase beta chain 5 K27093 accD4; long chain acyl-CoA carboxylase carboxyl transferase subunit beta 4 [EC:6.4.1.- 2.1.3.-]
D CCONF_04410 cadA; putative cadmium-transporting ATPase K12954 ctpG; cation-transporting P-type ATPase G [EC:7.2.2.-]
C 99981 Carbohydrate metabolism
D CCONF_04865 lutA; Lactate utilization protein A K18928 lldE; L-lactate dehydrogenase complex protein LldE
D CCONF_04860 lutB; Lactate utilization protein B K18929 lldF; L-lactate dehydrogenase complex protein LldF
D CCONF_04855 lutC; Lactate utilization protein C K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D CCONF_02045 formate dehydrogenase accessory protein K02379 fdhD; FdhD protein
D CCONF_06230 nifU; NifU-like protein K04488 iscU; nitrogen fixation protein NifU and related proteins
D CCONF_05110 etfB; Electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit
C 99983 Lipid metabolism
D CCONF_09220 fabG2; 3-oxoacyl-[acyl-carrier-protein] reductase FabG K27306 cmrA; mycolic acid reductase
C 99984 Nucleotide metabolism
D CCONF_09440 ribonucleotide reductase stimulatory protein K03647 nrdI; protein involved in ribonucleotide reduction
D CCONF_09740 Putative NrdI-like protein K03647 nrdI; protein involved in ribonucleotide reduction
D CCONF_02225 Putative NrdI-like protein K03647 nrdI; protein involved in ribonucleotide reduction
C 99985 Amino acid metabolism
D CCONF_07815 hypothetical protein K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
D CCONF_03570 rpf1; Resuscitation-promoting factor Rpf2 precursor K21687 rpfA; resuscitation-promoting factor RpfA
D CCONF_03950 rpf2; Resuscitation-promoting factor Rpf2 precursor K21688 rpfB; resuscitation-promoting factor RpfB
C 99987 Cofactor metabolism
D CCONF_03455 abgT1; p-aminobenzoyl-glutamate transport protein K12942 abgT; aminobenzoyl-glutamate transport protein
D CCONF_03480 abgT2; p-aminobenzoyl-glutamate transport protein K12942 abgT; aminobenzoyl-glutamate transport protein
C 99988 Secondary metabolism
D CCONF_09835 Alpha/beta hydrolase family protein K03932 lpqC; polyhydroxybutyrate depolymerase
D CCONF_02240 NADPH-dependent FMN reductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D CCONF_03905 mhqP; Putative oxidoreductase MhqP K15977 K15977; putative oxidoreductase
D CCONF_01660 DoxX K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D CCONF_03575 cspA2; Cold shock protein CspA K03704 cspA; cold shock protein
D CCONF_01135 cspA1; putative cold shock protein A K03704 cspA; cold shock protein
D CCONF_07410 hypothetical protein K06959 tex; protein Tex
C 99974 Translation
C 99975 Protein processing
D CCONF_09390 ATP-dependent Clp protease adaptor protein ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D CCONF_09040 tig; Trigger factor K03545 tig; trigger factor
D CCONF_03470 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CCONF_09445 nrdH; Glutaredoxin-like protein NrdH K06191 nrdH; glutaredoxin-like protein NrdH
D CCONF_07375 comM; Competence protein ComM K07391 comM; magnesium chelatase family protein
D CCONF_01590 ccs1; Cytochrome c biogenesis protein Ccs1 K07399 resB; cytochrome c biogenesis protein
C 99976 Replication and repair
D CCONF_04395 rmuC; DNA recombination protein RmuC K09760 rmuC; DNA recombination protein RmuC
D CCONF_07380 hypothetical protein K07460 yraN; putative endonuclease
D CCONF_06040 PD-(D/E)XK nuclease superfamily protein K07465 K07465; putative RecB family exonuclease
D CCONF_07370 hypothetical protein K04096 smf; DNA processing protein
D CCONF_06535 rarA; Replication-associated recombination protein A K07478 ycaJ; putative ATPase
D CCONF_00365 Transposase IS66 family protein K18320 IS15; transposase, IS6 family
D CCONF_09965 Transposase K07483 K07483; transposase
D CCONF_10575 Transposase K07483 K07483; transposase
D CCONF_00210 Transposase K07483 K07483; transposase
D CCONF_00235 Transposase K07483 K07483; transposase
D CCONF_00370 Transposase K07483 K07483; transposase
D CCONF_00385 Transposase K07483 K07483; transposase
D CCONF_00860 Transposase K07483 K07483; transposase
D CCONF_04220 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_07725 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_09155 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_09260 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_10650 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_00205 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_00435 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_01360 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_02020 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_03055 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_03115 Transposase, Mutator family K07493 K07493; putative transposase
D CCONF_00260 Putative transposase DNA-binding domain protein K07496 K07496; putative transposase
D CCONF_00430 Integrase core domain protein K07497 K07497; putative transposase
D CCONF_00875 Integrase core domain protein K07497 K07497; putative transposase
D CCONF_01355 hypothetical protein K07497 K07497; putative transposase
D CCONF_00415 Integrase core domain protein K07497 K07497; putative transposase
D CCONF_00425 Transposase K07497 K07497; putative transposase
D CCONF_00870 Transposase K07497 K07497; putative transposase
C 99979 Viral proteins
C 99998 Others
D CCONF_07075 PspA/IM30 family protein K03969 pspA; phage shock protein A
D CCONF_00925 Nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CCONF_01005 citN; Citrate transporter K03300 TC.CITMHS; citrate-Mg2+:H+ or citrate-Ca2+:H+ symporter, CitMHS family
D CCONF_09025 dtpT; Di-/tripeptide transporter K03305 TC.POT; proton-dependent oligopeptide transporter, POT family
D CCONF_03380 sglT; Sodium/glucose cotransporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D CCONF_07520 alsT1; Amino-acid carrier protein AlsT K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CCONF_09495 alsT2; Amino-acid carrier protein AlsT K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CCONF_08740 brnQ; Branched-chain amino acid transport system 2 carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CCONF_04040 putative transporter K07085 K07085; putative transport protein
C 99978 Cell growth
C 99993 Cell motility
C 99995 Signaling proteins
D CCONF_10015 cstA; Carbon starvation protein A K06200 cstA; carbon starvation protein
D CCONF_04570 typA; GTP-binding protein TypA/BipA K06207 typA; GTP-binding protein
D CCONF_06190 hypothetical protein K07166 K07166; ACT domain-containing protein
D CCONF_08640 ybeZ2; PhoH-like protein K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins
D CCONF_04330 ybeZ1; PhoH-like protein K07175 phoH2; PhoH-like ATPase
D CCONF_05320 hrp1; Hypoxic response protein 1 K07182 K07182; CBS domain-containing protein
C 99992 Structural proteins
D CCONF_05125 acm; Lysozyme M1 precursor K07273 acm; lysozyme
C 99994 Others
D CCONF_09600 hypothetical protein K02039 phoU; phosphate transport system protein
D CCONF_11180 czcO; putative oxidoreductase CzcO K07222 K07222; putative flavoprotein involved in K+ transport
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CCONF_01130 putative ATP-dependent helicase Lhr K06877 K06877; DEAD/DEAH box helicase domain-containing protein
D CCONF_09145 glbO; Group 2 truncated hemoglobin GlbO K06886 glbN; hemoglobin
D CCONF_04020 ydfJ2; Membrane protein YdfJ K06994 K06994; putative drug exporter of the RND superfamily
D CCONF_00820 ydfJ1; Membrane protein YdfJ K06994 K06994; putative drug exporter of the RND superfamily
D CCONF_00495 yihX1; Alpha-D-glucose-1-phosphate phosphatase YihX K07025 K07025; putative hydrolase of the HAD superfamily
D CCONF_06250 sufB; FeS cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB
D CCONF_06245 sufD; FeS cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD
D CCONF_01325 Ribonuclease BN-like family protein K07058 K07058; membrane protein
D CCONF_02650 yhjD; Inner membrane protein YhjD K07058 K07058; membrane protein
D CCONF_10965 hypothetical protein K07146 K07146; UPF0176 protein
D CCONF_11135 putative rhodanese-related sulfurtransferase K07146 K07146; UPF0176 protein
D CCONF_05395 yqjA2; Inner membrane protein YqjA K03975 dedA; membrane-associated protein
D CCONF_00320 yqjA1; Inner membrane protein YqjA K03975 dedA; membrane-associated protein
D CCONF_06575 ABC-2 family transporter protein K01421 yhgE; putative membrane protein
D CCONF_00740 Membrane protein of unknown function K08972 K08972; putative membrane protein
D CCONF_05490 hypothetical protein K08974 K08974; putative membrane protein
D CCONF_02520 Bacterial membrane flanked domain protein K08981 K08981; putative membrane protein
D CCONF_05825 hypothetical protein K09858 K09858; SEC-C motif domain protein
C 99997 Function unknown
D CCONF_10720 hypothetical protein K06860 K06860; putative heme uptake system protein
D CCONF_05475 Sulfite exporter TauE/SafE K06867 K06867; uncharacterized protein
D CCONF_08690 hypothetical protein K06867 K06867; uncharacterized protein
D CCONF_08870 Ankyrin repeats (3 copies) K06867 K06867; uncharacterized protein
D CCONF_09555 hypothetical protein K06975 K06975; uncharacterized protein
D CCONF_09715 hypothetical protein K06986 K06986; uncharacterized protein
D CCONF_00600 27 kDa antigen Cfp30B K06996 K06996; uncharacterized protein
D CCONF_09710 Endonuclease/Exonuclease/phosphatase family protein K07004 K07004; uncharacterized protein
D CCONF_08385 Amidohydrolase K07045 K07045; uncharacterized protein
D CCONF_06550 Putative neutral zinc metallopeptidase K07054 K07054; uncharacterized protein
D CCONF_06460 Epimerase family protein K07071 K07071; uncharacterized protein
D CCONF_05170 hypothetical protein K07090 K07090; uncharacterized protein
D CCONF_03140 Sulfite exporter TauE/SafE K07090 K07090; uncharacterized protein
D CCONF_09945 hypothetical protein K07093 K07093; uncharacterized protein
D CCONF_01015 phosphodiesterase YaeI K07098 K07098; uncharacterized protein
D CCONF_00475 xanthine-guanine phosphoribosyltransferase K07101 K07101; uncharacterized protein
D CCONF_04505 putative inner membrane protein K07112 K07112; uncharacterized protein
D CCONF_00515 Putative ammonia monooxygenase K07120 K07120; uncharacterized protein
D CCONF_00520 hypothetical protein K07120 K07120; uncharacterized protein
D CCONF_08200 Putative zinc ribbon domain protein K07164 K07164; uncharacterized protein
D CCONF_05850 hypothetical protein K08999 K08999; uncharacterized protein
D CCONF_04235 hypothetical protein K09009 K09009; uncharacterized protein
D CCONF_01020 Yqey-like protein K09117 K09117; uncharacterized protein
D CCONF_03350 hypothetical protein K09118 K09118; uncharacterized protein
D CCONF_04560 hypothetical protein K09146 K09146; uncharacterized protein
D CCONF_06195 hypothetical protein K09157 K09157; uncharacterized protein
D CCONF_02515 Bacterial membrane flanked domain protein K09167 K09167; uncharacterized protein
D CCONF_04555 yedI; Inner membrane protein YedI K09781 K09781; uncharacterized protein
D CCONF_11280 ybaN; Inner membrane protein YbaN K09790 K09790; uncharacterized protein
D CCONF_07235 hypothetical protein K09861 K09861; uncharacterized protein
!
#
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: June 16, 2024