+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Chrysoperla carnea</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        123306061 mRNA cap guanine-N7 methyltransferase	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        123305033 mRNA-capping enzyme	K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] 
E        123298234 cyclin-dependent kinase 7	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        123293050 cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1	K14589 CMTR1; cap1 methyltransferase [EC:2.1.1.57] 
E        123294053 RNA guanine-N7 methyltransferase activating subunit	K18708 FAM103A1; RNMT-activating mini protein 
D      Cap binding complex
E        123297478 nuclear cap-binding protein subunit 1 isoform X1	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        123306139 nuclear cap-binding protein subunit 2 isoform X1	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        123294492 cleavage and polyadenylation specificity factor subunit 5-like	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        123295650 cleavage and polyadenylation specificity factor subunit 5-like isoform X1	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
E        123298508 cleavage and polyadenylation specificity factor subunit 6 isoform X1	K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        123292132 protein CLP1 homolog	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        123292298 cleavage and polyadenylation specificity factor subunit 1	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        123294067 probable cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        123301080 cleavage and polyadenylation specificity factor 73	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        123297435 cleavage and polyadenylation specificity factor subunit 4	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        123291835 pre-mRNA 3'-end-processing factor FIP1	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        123303304 pre-mRNA 3' end processing protein WDR33	K15542 PFS2; polyadenylation factor subunit 2 
E        123300007 WD repeat-containing protein 82	K14962 WDR82; COMPASS component SWD2 
E        123301547 serine/threonine-protein phosphatase alpha-2 isoform	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        123293926 serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform X1	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        123305404 RNA polymerase II subunit A C-terminal domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        123292215 cleavage stimulation factor subunit 1	K14406 CSTF1; cleavage stimulation factor subunit 1 
E        123292114 cleavage stimulation factor subunit 2 isoform X1	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        123299696 protein suppressor of forked	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        123294088 symplekin	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        123304183 small nuclear ribonucleoprotein-associated protein B	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        123300417 small nuclear ribonucleoprotein Sm D3 isoform X1	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        123297583 probable small nuclear ribonucleoprotein E	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        123298368 small nuclear ribonucleoprotein F	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        123291051 probable small nuclear ribonucleoprotein G	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        123298548 U7 snRNA-associated Sm-like protein LSm10	K25591 LSM10; U7 snRNA-associated Sm-like protein LSm10 
E        123293370 U7 snRNA-associated Sm-like protein LSm11	K25592 LSM11; U7 snRNA-associated Sm-like protein LSm11 
E        123294067 probable cleavage and polyadenylation specificity factor subunit 2	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        123301080 cleavage and polyadenylation specificity factor 73	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        123292114 cleavage stimulation factor subunit 2 isoform X1	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        123294088 symplekin	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        123293659 transcription elongation factor SPT4-A	K15171 SUPT4H1; transcription elongation factor SPT4 
E        123304923 transcription elongation factor SPT5 isoform X1	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        123299948 N6-adenosine-methyltransferase subunit METTL3	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        123299988 N6-adenosine-methyltransferase non-catalytic subunit	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
E        123298582 N(6)-adenine-specific methyltransferase METTL4	K24174 METTL4; N(6)-adenine-specific DNA methyltransferase [EC:2.1.1.72] 
E        123295083 U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        123301575 pre-mRNA-splicing regulator WTAP isoform X1	K22824 WTAP; pre-mRNA-splicing regulator WTAP 
E        123297574 protein virilizer	K22910 VIRMA; protein virilizer 
E        123297542 RNA-binding protein spenito	K13190 RBM15; RNA-binding protein 15 
E        123296691 E3 ubiquitin-protein ligase Hakai	K15685 CBLL1; E3 ubiquitin-protein ligase Hakai [EC:2.3.2.27] 
D      Poly(A) addition factors
E        123291951 poly(A) polymerase type 3	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
E        123298567 poly(A) RNA polymerase gld-2 homolog A-like isoform X1	K14079 PAPD4; poly(A) RNA polymerase GLD2 [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
E        123295369 BRCA1-associated RING domain protein 1-like	K10683 BARD1; BRCA1-associated RING domain protein 1 
E        123302347 TAR DNA-binding protein 43-like isoform X1	K23600 TARDBP; TAR DNA-binding protein 43 
E        123299127 TAR DNA-binding protein 43-like	K23600 TARDBP; TAR DNA-binding protein 43 
E        123299128 TAR DNA-binding protein 43-like	K23600 TARDBP; TAR DNA-binding protein 43 
C    Other processing factors
D      123297905 DNA/RNA-binding protein KIN17	K13102 KIN; DNA/RNA-binding protein KIN17 
D      123297273 methyltransferase-like protein 22	K23040 METTL22; methyltransferase-like protein 22 [EC:2.1.1.-] 
D      123305194 terminal nucleotidyltransferase 5C isoform X1	K23034 TENT5C; terminal nucleotidyltransferase 5C [EC:2.7.7.19] 
D      123294565 serrate RNA effector molecule homolog	K27103 SRRT; serrate RNA effector molecule 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        123305287 RNA-binding protein 8A	K12876 RBM8A; RNA-binding protein 8A 
E        123292378 protein mago nashi	K12877 MAGOH; protein mago nashi 
E        123296979 THO complex subunit 4	K12881 THOC4; THO complex subunit 4 
E        123304917 ATP-dependent RNA helicase WM6	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        123291826 eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        123290478 coiled-coil domain-containing protein 174	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        123300645 histone deacetylase complex subunit SAP18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        123292097 pinin	K13114 PNN; pinin 
E        123291619 RNA-binding protein with serine-rich domain 1-B	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
D      TREX complex
E        123297647 THO complex subunit 1	K12878 THOC1; THO complex subunit 1 
E        123291524 THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        123305835 THO complex subunit 3	K12880 THOC3; THO complex subunit 3 
E        123296979 THO complex subunit 4	K12881 THOC4; THO complex subunit 4 
E        123297544 THO complex subunit 5 homolog isoform X1	K13174 THOC5; THO complex subunit 5 
E        123296097 THO complex subunit 6 homolog	K13175 THOC6; THO complex subunit 6 
E        123300233 THO complex subunit 7 homolog	K13176 THOC7; THO complex subunit 7 
D      TREX-2 complex
E        123294021 PCI domain-containing protein 2	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        123298253 26S proteasome complex subunit SEM1	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        123305856 transcription and mRNA export factor ENY2	K11368 ENY2; enhancer of yellow 2 transcription factor 
D      Nuclear pore complex
E        123299048 nucleoprotein TPR isoform X1	K09291 TPR; nucleoprotein TPR 
E        123290895 protein Rae1	K14298 RAE1; mRNA export factor 
E        123293947 protein SEC13 homolog	K14004 SEC13; protein transport protein SEC13 
E        123299144 nucleoporin Nup37	K14302 NUP37; nuclear pore complex protein Nup37 
E        123295022 nuclear pore complex protein Nup75	K14304 NUP85; nuclear pore complex protein Nup85 
E        123301773 nucleoporin Nup43	K14305 NUP43; nuclear pore complex protein Nup43 
E        123291615 nuclear pore complex protein Nup50	K14295 NUP50; nuclear pore complex protein Nup50 
E        123292116 probable nucleoporin Nup54	K14308 NUP54; nuclear pore complex protein Nup54 
E        123297376 nuclear pore glycoprotein p62	K14306 NUP62; nuclear pore complex protein Nup62 
E        123300516 nuclear pore complex protein Nup88	K14318 NUP88; nuclear pore complex protein Nup88 
E        123301581 nuclear pore complex protein Nup93-like	K14309 NUP93; nuclear pore complex protein Nup93 
E        123302691 nuclear pore complex protein Nup98-Nup96	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        123305686 nuclear pore complex protein Nup107	K14301 NUP107; nuclear pore complex protein Nup107 
E        123294265 nuclear pore complex protein Nup133	K14300 NUP133; nuclear pore complex protein Nup133 
E        123296146 nucleoporin Nup188	K14311 NUP188; nuclear pore complex protein Nup188 
E        123296620 nuclear pore complex protein Nup153-like isoform X1	K14296 NUP153; nuclear pore complex protein Nup153 
E        123297851 nuclear pore complex protein Nup154	K14312 NUP155; nuclear pore complex protein Nup155 
E        123305095 nuclear pore complex protein Nup160 homolog	K14303 NUP160; nuclear pore complex protein Nup160 
E        123301169 nucleoporin Nup35	K14313 NUP35; nuclear pore complex protein Nup53 
E        123295445 nuclear pore complex protein Nup205	K14310 NUP205; nuclear pore complex protein Nup205 
E        123299655 nuclear pore membrane glycoprotein 210	K14314 NUP210; nuclear pore complex protein Nup210 
E        123292117 nucleoporin NDC1	K14315 NDC1; nucleoporin NDC1 
E        123297585 nucleoporin SEH1-A	K14299 SEH1; nucleoporin SEH1 
E        123300158 aladin	K14320 AAAS; aladin 
E        123301541 nucleoporin NUP100/NSP100-like	K18716 NUP42; nucleoporin NUP42 
E        123294043 nucleoporin GLE1	K18723 GLE1; nucleoporin GLE1 
E        123294000 nuclear RNA export factor 1-like	K14284 NXF; nuclear RNA export factor 
E        123293139 nuclear RNA export factor 1-like	K14284 NXF; nuclear RNA export factor 
E        123296389 NTF2-related export protein isoform X1	K14285 NXT1_2; NTF2-related export protein 1/2 
D      Ran-mediated transport factors
E        123296934 GTP-binding nuclear protein Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        123305495 acidic leucine-rich nuclear phosphoprotein 32 family member A isoform X1	K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D 
E        123302519 ELAV-like protein 3 isoform X1	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        123296278 ELAV-like protein 3	K13208 ELAVL2_3_4; ELAV like protein 2/3/4 
E        123301712 FAS-associated factor 2	K18726 FAF2; FAS-associated factor 2 
E        123297427 transitional endoplasmic reticulum ATPase TER94 isoform X1	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        123295161 exportin-1	K14290 XPO1; exportin-1 
E        123297641 exportin-7 isoform X1	K18460 XPO7; exportin-7 
E        123295170 ran GTPase-activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        123290408 eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        123300586 eukaryotic translation initiation factor 4E-1A-like isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        123306192 eukaryotic initiation factor 4A-I	K03257 EIF4A; translation initiation factor 4A 
E        123290381 eukaryotic translation initiation factor 4 gamma 1-like isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        123299164 eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        123293911 eukaryotic translation initiation factor 4B	K03258 EIF4B; translation initiation factor 4B 
E        123301672 eukaryotic translation initiation factor 4H-like	K24086 EIF4H; translation initiation factor 4H 
E        123300220 eukaryotic translation initiation factor 4E-binding protein	K18644 EIF4EBP2; eukaryotic translation initiation factor 4E binding protein 2 
E        123292156 protein angel homolog 2	K18729 ANGEL; protein angel 
E        123298457 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        123302714 cytoplasmic FMR1-interacting protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        123302238 cytoplasmic polyadenylation element-binding protein 2 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        123304951 cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        123290469 ATP-dependent RNA helicase DDX3X	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        123291666 polyadenylate-binding protein 1 isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        123295662 uncharacterized protein LOC123295662	K14322 PAIP1; polyadenylate-binding protein-interacting protein 1 
E        123302671 polyadenylate-binding protein-interacting protein 2	K27470 PAIP2; polyadenylate-binding protein-interacting protein 2 
E        123291381 helicase SKI2W	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        123295375 deformed epidermal autoregulatory factor 1 isoform X1	K23041 DEAF1; deformed epidermal autoregulatory factor 1 
E        123298381 malignant T-cell-amplified sequence 1 homolog	K07575 MCTS; malignant T-cell-amplified sequence 
E        123292626 density-regulated protein homolog	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
E        123292865 probable RNA-binding protein 46	K24978 A1CF; APOBEC1 complementation factor 
D      Other transport factors
E        123293517 partner of Y14 and mago	K14294 WIBG; partner of Y14 and mago 
E        123304965 heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog isoform X1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        123296455 RNA-binding protein Musashi homolog Rbp6 isoform X1	K14411 MSI; RNA-binding protein Musashi 
E        123298365 RNA-binding protein Musashi homolog 2 isoform X1	K14411 MSI; RNA-binding protein Musashi 
E        123298572 heterogeneous nuclear ribonucleoprotein 27C isoform X1	K14411 MSI; RNA-binding protein Musashi 
E        123294453 HBS1-like protein isoform X1	K14416 HBS1; elongation factor 1 alpha-like protein 
E        123294673 protein pelota	K06965 PELO; protein pelota 
E        123300029 polyadenylate-binding protein 2	K14396 PABPN1; polyadenylate-binding protein 2 
E        123291654 DEAD-box helicase Dbp80	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        123298688 pre-mRNA-splicing factor syf1 homolog	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        123298634 SAP domain-containing ribonucleoprotein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        123296752 regulator of chromosome condensation	K11493 RCC1; regulator of chromosome condensation 
E        123299633 la-related protein 6-like	K18733 LARP6; la-related protein 6 
E        123291593 transcriptional activator protein Pur-beta	K21772 PURA; transcriptional activator protein Pur-alpha 
E        123297340 leukocyte receptor cluster member 8 homolog	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        123299219 eukaryotic peptide chain release factor subunit 1	K03265 ETF1; peptide chain release factor subunit 1 
E        123296747 eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X1	K03267 ERF3; peptide chain release factor subunit 3 
E        123298559 regulator of nonsense transcripts 1 homolog isoform X1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        123293406 regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
D      Protein phosphatase 2A
E        123300899 serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        123295131 serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform isoform X1	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        123298495 protein phosphatase PP2A 55 kDa regulatory subunit isoform X1	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        123290894 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        123300788 uncharacterized protein LOC123300788 isoform X1	K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B'' 
E        123291374 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform-like	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        123291376 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform-like isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
E        123292337 serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform isoform X1	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        123298144 serine/threonine-protein kinase SMG1 isoform X1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        123296956 uncharacterized protein LOC123296956	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        123299184 protein SMG8	K18734 SMG8; protein SMG8 
E        123294010 protein SMG9-like	K18735 SMG9; protein SMG9 
E        123294126 probable ATP-dependent RNA helicase DHX34	K20101 DHX34; ATP-dependent RNA helicase DHX34 [EC:5.6.2.6] 
E        123295517 GTP-binding protein 1	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        123294922 protein penguin	K14844 PUF6; pumilio homology domain family member 6 
E        123300288 unconventional myosin-Va isoform X1	K10357 MYO5; myosin V 
E        123297321 protein bicaudal D isoform X1	K18739 BICD; protein bicaudal D 
E        123290891 uncharacterized protein LOC123290891	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
E        123294873 actin-5C	K05692 ACTB_G1; actin beta/gamma 1 
E        123295327 actin, cytoplasmic A3a-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123292243 actin, clone 403-like	K05692 ACTB_G1; actin beta/gamma 1 
E        123294616 protein hairy	K09090 HESN; hairy and enhancer of split, invertebrate 
E        123295495 protein deadpan-like	K09090 HESN; hairy and enhancer of split, invertebrate 
E        123300228 enhancer of split mgamma protein-like	K09090 HESN; hairy and enhancer of split, invertebrate 
E        123300258 enhancer of split mbeta protein-like	K09090 HESN; hairy and enhancer of split, invertebrate 
D      Trans-acting binding proteins
E        123305510 far upstream element-binding protein 2 isoform X1	K13210 FUBP; far upstream element-binding protein 
E        123291898 elongation factor 1-alpha	K03231 EEF1A; elongation factor 1-alpha 
E        123300658 elongation factor 1-alpha-like	K03231 EEF1A; elongation factor 1-alpha 
E        123292160 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
E        123301523 arf-GAP domain and FG repeat-containing protein 1	K15044 AGFG1; Arf-GAP domain and FG repeats-containing protein 1 
E        123302488 double-stranded RNA-binding protein Staufen homolog 2 isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        123290557 polypyrimidine tract-binding protein 1 isoform X1	K13218 PTBP1; polypyrimidine tract-binding protein 1 
E        123290699 RNA-binding protein squid isoform X1	K03102 SQD; squid 
E        123302238 cytoplasmic polyadenylation element-binding protein 2 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        123304951 cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
D      Other mRNA localization factors
E        123298457 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        123302714 cytoplasmic FMR1-interacting protein	K05749 CYFIP; cytoplasmic FMR1 interacting protein 
E        123291546 poly(rC)-binding protein 2 isoform X1	K21444 PCBP3_4; poly(rC)-binding protein 3/4 
E        123296741 CUGBP Elav-like family member 2 isoform X1	K02177 BRU; bruno 
E        123299034 maternal protein exuperantia	K18745 EXU; maternal protein exuperantia 
E        123305532 Y-box factor homolog	K09276 YBX1; Y-box-binding protein 1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        123291873 5'-3' exoribonuclease 1 isoform X1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        123297019 protein argonaute-2-like	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        123299050 protein argonaute-2	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        123300711 protein argonaute-2-like isoform X1	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        123290408 eukaryotic translation initiation factor 4E type 2	K03259 EIF4E; translation initiation factor 4E 
E        123300586 eukaryotic translation initiation factor 4E-1A-like isoform X1	K03259 EIF4E; translation initiation factor 4E 
E        123298559 regulator of nonsense transcripts 1 homolog isoform X1	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        123290469 ATP-dependent RNA helicase DDX3X	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        123306123 ATP-dependent RNA helicase me31b	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        123299733 RNA-binding protein MEX3B	K15686 MEX3; RNA-binding protein MEX3 [EC:2.3.2.27] 
E        123305532 Y-box factor homolog	K09276 YBX1; Y-box-binding protein 1 
E        123300918 LIM domain-containing protein jub	K16682 AJUBA; LIM domain-containing protein 
E        123291473 putative helicase mov-10-B.2	K18422 MOV10; helicase MOV-10 [EC:5.6.2.5] 
E        123298670 proline-rich nuclear receptor coactivator 2-like	K18751 PNRC2; proline-rich nuclear receptor coactivator 2 
E        123302330 transportin-1-like isoform X1	K18752 TNPO1; transportin-1 
E        123296939 transportin-2	K18752 TNPO1; transportin-1 
E        123298144 serine/threonine-protein kinase SMG1 isoform X1	K08873 SMG1; serine/threonine-protein kinase SMG1 [EC:2.7.11.1] 
E        123296956 uncharacterized protein LOC123296956	K11124 SMG6; protein SMG6 [EC:3.1.-.-] 
E        123291849 mRNA decay activator protein ZFP36L1	K18753 ZFP36L; butyrate response factor 
E        123290864 protein lin-28 homolog	K18754 LIN28; protein lin-28 
E        123290919 huntingtin	K04533 HD; huntingtin 
E        123299960 protein bicaudal C	K18756 BICC1; protein bicaudal C 
E        123304965 heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog isoform X1	K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 
E        123301774 cAMP-dependent protein kinase catalytic subunit 1	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        123291515 cAMP-dependent protein kinase catalytic subunit alpha-like	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        123292845 cAMP-dependent protein kinase catalytic subunit alpha-like	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        123302568 la-related protein 1B isoform X1	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        123298581 m7GpppN-mRNA hydrolase	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        123294773 mRNA-decapping enzyme 1B	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        123300686 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        123302243 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        123296838 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        123301638 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        123305564 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        123296683 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        123298289 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        123300756 U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        123305900 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        123293901 kinesin light chain isoform X1	K10407 KLC; kinesin light chain 
E        123300288 unconventional myosin-Va isoform X1	K10357 MYO5; myosin V 
E        123303107 tubulin alpha-1 chain-like	K07374 TUBA; tubulin alpha 
E        123305062 tubulin alpha-3 chain	K07374 TUBA; tubulin alpha 
E        123295740 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        123298194 tubulin alpha-4 chain-like isoform X1	K07374 TUBA; tubulin alpha 
E        123298213 tubulin alpha chain-like isoform X1	K07374 TUBA; tubulin alpha 
E        123298426 tubulin alpha-1 chain	K07374 TUBA; tubulin alpha 
E        123290855 tubulin alpha-1 chain-like	K07374 TUBA; tubulin alpha 
E        123290994 tubulin alpha-1 chain-like	K07374 TUBA; tubulin alpha 
E        123291066 tubulin alpha-1 chain-like	K07374 TUBA; tubulin alpha 
E        123291067 tubulin alpha-8 chain-like	K07374 TUBA; tubulin alpha 
E        123291069 tubulin alpha chain-like	K07374 TUBA; tubulin alpha 
E        123300797 tubulin alpha-8 chain-like	K07374 TUBA; tubulin alpha 
E        123301165 tubulin alpha-1 chain-like	K07374 TUBA; tubulin alpha 
E        123302238 cytoplasmic polyadenylation element-binding protein 2 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        123304951 cytoplasmic polyadenylation element-binding protein 1 isoform X1	K02602 CPEB; cytoplasmic polyadenylation element-binding protein 
E        123296720 protein Gawky isoform X1	K18412 TNRC6; trinucleotide repeat-containing gene 6 protein 
E        123295443 CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        123297533 regulator of gene activity isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        123293408 CCR4-NOT transcription complex subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        123290863 putative uncharacterized protein DDB_G0286901	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        123292164 CCR4-NOT transcription complex subunit 6-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        123293582 CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        123303077 CCR4-NOT transcription complex subunit 8-like	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        123298759 DIS3-like exonuclease 2	K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] 
E        123293954 PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        123294829 PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        123295069 protein Tob1-like	K14443 TOB; protein Tob/BTG 
E        123292347 protein BTG3-like	K14443 TOB; protein Tob/BTG 
E        123298506 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        123298086 enhancer of mRNA-decapping protein 3	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        123298808 uncharacterized protein LOC123298808	K18760 NANOS2; protein nanos 2 
E        123293406 regulator of nonsense transcripts 2	K14327 UPF2; regulator of nonsense transcripts 2 
E        123301491 E3 ubiquitin-protein ligase TRIM71 isoform X1	K12035 TRIM71; tripartite motif-containing protein 71 [EC:2.3.2.27] 
E        123295757 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Stress granule specific factors
E        123294285 nucleolysin TIAR	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        123291666 polyadenylate-binding protein 1 isoform X1	K13126 PABPC; polyadenylate-binding protein 
E        123302488 double-stranded RNA-binding protein Staufen homolog 2 isoform X1	K17597 STAU; double-stranded RNA-binding protein Staufen 
E        123298457 synaptic functional regulator FMR1 isoform X1	K15516 FMR; fragile X mental retardation protein 
E        123305157 eukaryotic translation initiation factor 2A	K15026 EIF2A; translation initiation factor 2A 
E        123295594 eukaryotic translation initiation factor 3 subunit B	K03253 EIF3B; translation initiation factor 3 subunit B 
E        123306192 eukaryotic initiation factor 4A-I	K03257 EIF4A; translation initiation factor 4A 
E        123291826 eukaryotic initiation factor 4A-III	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        123293911 eukaryotic translation initiation factor 4B	K03258 EIF4B; translation initiation factor 4B 
E        123290381 eukaryotic translation initiation factor 4 gamma 1-like isoform X1	K03260 EIF4G; translation initiation factor 4G 
E        123299164 eukaryotic translation initiation factor 4 gamma 2	K03260 EIF4G; translation initiation factor 4G 
E        123300898 guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        123294000 nuclear RNA export factor 1-like	K14284 NXF; nuclear RNA export factor 
E        123293139 nuclear RNA export factor 1-like	K14284 NXF; nuclear RNA export factor 
E        123302324 histone deacetylase 6 isoform X1	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
E        123295355 mucin-5AC isoform X1	K18763 LARP4; la-related protein 4 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        123294773 mRNA-decapping enzyme 1B	K12611 DCP1B; mRNA-decapping enzyme 1B [EC:3.-.-.-] 
E        123298581 m7GpppN-mRNA hydrolase	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        123306123 ATP-dependent RNA helicase me31b	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        123298086 enhancer of mRNA-decapping protein 3	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        123298506 protein PAT1 homolog 1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        123300686 U6 snRNA-associated Sm-like protein LSm1	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        123302243 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        123296838 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        123301638 U6 snRNA-associated Sm-like protein LSm3	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        123305564 U6 snRNA-associated Sm-like protein LSm4	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        123296683 U6 snRNA-associated Sm-like protein LSm5	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        123298289 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        123300756 U6 snRNA-associated Sm-like protein LSm7	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        123305900 U6 snRNA-associated Sm-like protein LSm8	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        123291873 5'-3' exoribonuclease 1 isoform X1	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        123294103 5'-3' exoribonuclease 2 homolog	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        123291584 m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        123299285 probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
C    3'-5' decay
D      Core exosome factors
E        123293307 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
E        123293061 exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        123293852 exosome complex component RRP40	K03681 RRP40; exosome complex component RRP40 
E        123291015 exosome complex component RRP41 isoform X1	K11600 RRP41; exosome complex component RRP41 
E        123293491 exosome complex component RRP46	K12590 RRP46; exosome complex component RRP46 
E        123303876 exosome complex component MTR3	K12587 MTR3; exosome complex component MTR3 
E        123293284 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
E        123292684 exosome complex component RRP43-like	K12586 RRP43; exosome complex component RRP43 
E        123292191 exosome complex component rrp45	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        123302598 exosome complex exonuclease RRP44	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        123305599 exosome component 10	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        123305891 nuclear nucleic acid-binding protein C1D-like	K12592 C1D; exosome complex protein LRP1 
E        123305462 M-phase phosphoprotein 6	K12593 MPHOSPH6; M-phase phosphoprotein 6, animal type 
D      TRAMP complex
E        123303594 uncharacterized protein LOC123303594	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        123303104 exosome RNA helicase MTR4	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        123291381 helicase SKI2W	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        123301081 tetratricopeptide repeat protein 37	K12600 SKI3; superkiller protein 3 
E        123305140 WD repeat-containing protein 61-like	K12602 WDR61; WD repeat-containing protein 61 
D      Ccr4-NOT complex
E        123292164 CCR4-NOT transcription complex subunit 6-like isoform X1	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        123295443 CCR4-NOT transcription complex subunit 1 isoform X1	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        123297533 regulator of gene activity isoform X1	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        123293408 CCR4-NOT transcription complex subunit 3 isoform X1	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        123290863 putative uncharacterized protein DDB_G0286901	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        123293582 CCR4-NOT transcription complex subunit 7	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        123303077 CCR4-NOT transcription complex subunit 8-like	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        123304961 CCR4-NOT transcription complex subunit 9	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        123300459 CCR4-NOT transcription complex subunit 10	K12607 CNOT10; CCR4-NOT transcription complex subunit 10 
D      Pan complex
E        123293954 PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        123294829 PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        123295628 poly(A)-specific ribonuclease PARN-like	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        123295738 pre-piRNA 3'-exonuclease trimmer-like	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        123300489 ATP-dependent DNA/RNA helicase DHX36-like	K14442 DHX36; ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] 
E        123295069 protein Tob1-like	K14443 TOB; protein Tob/BTG 
E        123292347 protein BTG3-like	K14443 TOB; protein Tob/BTG 
E        123296750 nocturnin isoform X1	K18764 NOCT; nocturnin [EC:3.1.3.108] 
E        123291584 m7GpppX diphosphatase	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        123303115 2',5'-phosphodiesterase 12 isoform X1	K19612 PDE12; 2',5'-phosphodiesterase [EC:3.1.13.4 3.1.4.-] 
E        123299285 probable helicase with zinc finger domain	K25168 HELZ; helicase with zinc finger domain [EC:5.6.2.-] 
E        123293622 protein Smaug	K27396 SMG; protein Smaug 
E        123298668 focadhesin	K27498 FOCAD; focadhesin 
C    Other degradation factors
D      RNases
E        123301565 probable ribonuclease ZC3H12D isoform X1	K18668 ZC3H12; ribonuclease ZC3H12 [EC:3.1.-.-] 
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        123302469 ribonuclease 3	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        123300087 probable oligoribonuclease isoform X1	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        123295200 enolase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        123291388 polyribonucleotide nucleotidyltransferase 1, mitochondrial	K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] 
E        123297233 ATP-dependent 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        123296385 chaperone protein HscA homolog	K04043 dnaK; molecular chaperone DnaK 
E        123297832 heat shock 70 kDa protein cognate 5	K04043 dnaK; molecular chaperone DnaK 
E        123305519 heat shock protein 60A	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        123293061 exosome complex component RRP4	K03679 RRP4; exosome complex component RRP4 
E        123293307 exosome complex component CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        123291015 exosome complex component RRP41 isoform X1	K11600 RRP41; exosome complex component RRP41 
E        123293284 exosome complex component RRP42-like	K12589 RRP42; exosome complex component RRP42 
D      Others
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#<hr>
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#Last updated: April 25, 2024