+F Repair protein KO #

  DNA Repair and Recombination Proteins - Chondromyces crocatus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CMC5_064700 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CMC5_052460 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CMC5_071840 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CMC5_032310 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CMC5_051160 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CMC5_050980 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CMC5_032300 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CMC5_068450 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_007780 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_049170 uncharacterized protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_039590 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_064900 uncharacterized protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_041590 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CMC5_024210 uncharacterized protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CMC5_064700 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CMC5_052460 ogt; methylated-DNA--protein-cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CMC5_067200 araC; AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CMC5_071840 phrB; deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CMC5_032310 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CMC5_016790 DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E CMC5_004240 uncharacterized protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CMC5_052450 DNA-3-methyladenine glycosylase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CMC5_051160 adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CMC5_057420 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CMC5_002320 mutM; formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CMC5_018860 DNA glycosylase K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E CMC5_050980 uncharacterized protein K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CMC5_032300 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CMC5_006560 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CMC5_037880 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CMC5_053610 nfi; endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E CMC5_059150 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CMC5_039580 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CMC5_003550 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CMC5_061280 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CMC5_050280 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CMC5_000880 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CMC5_078420 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E CMC5_012300 uvrC; excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CMC5_027400 nuclease K03703 uvrC; excinuclease ABC subunit C E CMC5_014770 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMC5_019540 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMC5_044400 ATPase AAA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMC5_009530 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMC5_003550 polA; DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CMC5_039580 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CMC5_015480 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CMC5_015490 rpoC; DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CMC5_007640 rpoA; DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CMC5_076230 rpoZ; DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CMC5_036460 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CMC5_040410 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E CMC5_076380 mutS; DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 E CMC5_078750 mutL; DNA mismatch repair protein K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E CMC5_004430 mutL; DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CMC5_039530 xseA; exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CMC5_068780 uncharacterized protein K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CMC5_049860 dnaE; DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CMC5_005410 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CMC5_033880 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CMC5_034340 uncharacterized protein K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CMC5_081930 dnaQ; DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CMC5_064970 uncharacterized protein K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CMC5_084410 DNA polymerase III subunit tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CMC5_039580 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CMC5_014770 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMC5_019540 pcrA; ATP-dependent DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMC5_044400 ATPase AAA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMC5_009530 DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CMC5_033790 uncharacterized protein K03111 ssb; single-strand DNA-binding protein E CMC5_001180 smpB; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CMC5_004550 dam; DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CMC5_004600 DNA methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E CMC5_060340 uncharacterized protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CMC5_006980 ATPase AAA K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] E CMC5_064570 recA; recombinase A K03553 recA; recombination protein RecA E CMC5_033780 recA; recombinase RecA K03553 recA; recombination protein RecA E CMC5_027760 recA; recombinase RecA K03553 recA; recombination protein RecA E CMC5_068470 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CMC5_075910 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CMC5_063860 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CMC5_016090 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E CMC5_064570 recA; recombinase A K03553 recA; recombination protein RecA E CMC5_033780 recA; recombinase RecA K03553 recA; recombination protein RecA E CMC5_027760 recA; recombinase RecA K03553 recA; recombination protein RecA E CMC5_005420 recF; DNA recombination protein RecF K03629 recF; DNA replication and repair protein RecF E CMC5_067500 uncharacterized protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CMC5_059150 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CMC5_065230 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CMC5_084390 recR; recombinase RecR K06187 recR; recombination protein RecR E CMC5_021630 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CMC5_079500 uncharacterized protein K03554 rdgC; recombination associated protein RdgC E CMC5_068470 ruvA; Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CMC5_075910 ruvB; Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CMC5_063860 ruvC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E CMC5_064270 uncharacterized protein K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E CMC5_084500 ATP-dependent deoxyribonuclease subunit A K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E CMC5_064080 uncharacterized protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] E CMC5_084490 uncharacterized protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor E CMC5_052650 CRISPR-associated protein Cas1 K15342 cas1; CRISP-associated protein Cas1 E CMC5_026590 uncharacterized protein K15342 cas1; CRISP-associated protein Cas1 D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E CMC5_008830 Ku protein K10979 ku; DNA end-binding protein Ku E CMC5_051300 ligD; DNA polymerase LigD, ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] E CMC5_008840 ligC; ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CMC5_049670 gyrA; DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CMC5_039640 DNA topoisomerase K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CMC5_005430 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CMC5_039630 gyrB; DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CMC5_031030 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] F CMC5_027700 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CMC5_006050 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CMC5_059150 single-stranded DNA exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CMC5_065230 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CMC5_084390 recR; recombinase RecR K06187 recR; recombination protein RecR F CMC5_039580 DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CMC5_001210 ihfB; integration host factor subunit beta K04764 ihfA; integration host factor subunit alpha F CMC5_014560 ihfB; integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F CMC5_061870 recQ; ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CMC5_061280 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CMC5_050280 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CMC5_000880 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CMC5_078420 uvrB; excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CMC5_078680 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CMC5_064570 recA; recombinase A K03553 recA; recombination protein RecA D CMC5_033780 recA; recombinase RecA K03553 recA; recombination protein RecA D CMC5_027760 recA; recombinase RecA K03553 recA; recombination protein RecA D CMC5_059040 lexA; LexA repressor K01356 lexA; repressor LexA [EC:3.4.21.88] D CMC5_021630 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CMC5_064560 uncharacterized protein K14161 imuB; protein ImuB D CMC5_064550 DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CMC5_033790 uncharacterized protein K03111 ssb; single-strand DNA-binding protein D CMC5_001180 smpB; single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CMC5_081580 rep; ATP-dependent DNA helicase Rep K03656 rep; ATP-dependent DNA helicase Rep [EC:5.6.2.4] D CMC5_055920 helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CMC5_037580 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D CMC5_018890 DEAD/DEAH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D CMC5_068450 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_007780 mutT; DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_049170 uncharacterized protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_039590 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_064900 uncharacterized protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CMC5_041590 dut; deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CMC5_024210 uncharacterized protein K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CMC5_014950 nrdA; ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CMC5_024850 ribonucleoside-diphosphate reductase K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CMC5_024860 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024