+E Transcription factors KO #

  Transcription Factors - Caldicellulosiruptor diazotrophicus

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family C LysR family C DeoR family D CaldiYA01_01140 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CaldiYA01_03410 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CaldiYA01_22610 DeoR family transcriptional regulator K03436 fruR2; DeoR family transcriptional regulator, fructose operon transcriptional repressor D CaldiYA01_18080 spoIIID; stage III sporulation protein D K06283 spoIIID; putative DeoR family transcriptional regulator, stage III sporulation protein D C LacI family D CaldiYA01_02570 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CaldiYA01_18820 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CaldiYA01_20340 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CaldiYA01_20630 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CaldiYA01_21390 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CaldiYA01_05220 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D CaldiYA01_02720 cytR_1; DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D CaldiYA01_20870 cytR_2; DNA-binding transcriptional regulator CytR K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG C GntR family D CaldiYA01_03710 araR; arabinose metabolism transcriptional repressor K02103 araR; GntR family transcriptional regulator, arabinose operon transcriptional repressor D CaldiYA01_07570 ymfC; putative HTH-type transcriptional regulator YmfC K03710 K03710; GntR family transcriptional regulator D CaldiYA01_03580 ytrA; HTH-type transcriptional repressor YtrA K07979 ytrA; GntR family transcriptional regulator C TetR/AcrR family C Lrp/AsnC family C LuxR family C MarR family C MerR family C Fur family D CaldiYA01_09490 fur; transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D CaldiYA01_03010 hypothetical protein K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D CaldiYA01_04040 transcriptional repressor K02076 zurR; Fur family transcriptional regulator, zinc uptake regulator D CaldiYA01_22450 transcriptional repressor K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator C IclR family D CaldiYA01_01390 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor D CaldiYA01_01190 IclR family transcriptional regulator K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor C CRP/FNR family C Rrf2 family D CaldiYA01_08240 AsnC family transcriptional regulator K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor C ArsR family D CaldiYA01_04070 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CaldiYA01_06230 arsr; transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D CaldiYA01_21020 transcriptional regulator K21903 cadC; ArsR family transcriptional regulator, lead/cadmium/zinc/bismuth-responsive transcriptional repressor C XRE family C PadR family C Other families D CaldiYA01_11510 transcriptional regulator K02171 blaI; BlaI family transcriptional regulator, penicillinase repressor D CaldiYA01_21920 birA; bifunctional ligase/repressor BirA K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D CaldiYA01_22920 purR3; LacI family transcriptional regulator K09685 purR; HTH-type transcriptional regulator, purine operon repressor D CaldiYA01_18000 rex; redox-sensing transcriptional repressor Rex K01926 rex; redox-sensing transcriptional repressor D CaldiYA01_04150 codY; GTP-sensing transcriptional pleiotropic repressor CodY K03706 codY; transcriptional pleiotropic repressor D CaldiYA01_02300 hypothetical protein K07729 K07729; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families B Other transcription factors C BglG family C Others D CaldiYA01_07760 hypothetical protein K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CaldiYA01_09090 transcriptional regulator K21600 csoR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor D CaldiYA01_22360 abrB; AbrB family transcriptional regulator K06284 abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes D CaldiYA01_14960 AbrB family transcriptional regulator K04769 spoVT; AbrB family transcriptional regulator, stage V sporulation protein T D CaldiYA01_24200 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CaldiYA01_24240 nucleoid occlusion protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D CaldiYA01_12630 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D CaldiYA01_15540 glpP; glycerol uptake operon antiterminator regulatory protein K02443 glpP; glycerol uptake operon antiterminator D CaldiYA01_11720 argR; arginine repressor K03402 argR; transcriptional regulator of arginine metabolism D CaldiYA01_09580 hrcA; heat-inducible transcription repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D CaldiYA01_07050 ctsR; transcriptional regulator CtsR K03708 ctsR; transcriptional regulator of stress and heat shock response D CaldiYA01_11110 cggR; central glycolytic genes regulator K05311 cggR; central glycolytic genes regulator D CaldiYA01_12460 hypothetical protein K06285 mtrB; transcription attenuation protein (tryptophan RNA-binding attenuator protein) D CaldiYA01_11370 pyrR; bifunctional protein PyrR K02825 pyrR; pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] D CaldiYA01_10080 nrdR; transcriptional repressor NrdR K07738 nrdR; transcriptional repressor NrdR D CaldiYA01_17020 mraZ; transcriptional regulator MraZ K03925 mraZ; transcriptional regulator MraZ ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: June 7, 2024 #
Classification taken and modified from TRANSFAC 7.0