+D GENES KO #

  KEGG Orthology (KO) - Chelatococcus daeguensis

% ! A09100 Metabolism B B 09101 Carbohydrate metabolism C 00010 Glycolysis / Gluconeogenesis [PATH:cdq00010] D BOQ54_14370 hypothetical protein K00845 glk; glucokinase [EC:2.7.1.2] D BOQ54_05375 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BOQ54_11190 fructose-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D BOQ54_13850 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BOQ54_09325 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BOQ54_13835 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BOQ54_13845 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D BOQ54_16720 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BOQ54_09375 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BOQ54_14045 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BOQ54_05945 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D BOQ54_04235 transketolase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D BOQ54_09385 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D BOQ54_09390 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D BOQ54_03605 hypothetical protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_17170 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_09395 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_19045 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BOQ54_08710 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17160 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D BOQ54_01885 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_02100 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_06705 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D BOQ54_05625 hypothetical protein K20866 yihX; glucose-1-phosphatase [EC:3.1.3.10] D BOQ54_16165 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D BOQ54_01045 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] C 00020 Citrate cycle (TCA cycle) [PATH:cdq00020] D BOQ54_09270 citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D BOQ54_18635 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D BOQ54_18640 citrate synthase/methylcitrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D BOQ54_02290 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D BOQ54_12000 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D BOQ54_01945 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D BOQ54_01940 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_01950 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D BOQ54_01955 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D BOQ54_01995 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BOQ54_01990 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BOQ54_02005 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D BOQ54_02000 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D BOQ54_14375 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D BOQ54_12530 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D BOQ54_01960 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BOQ54_07405 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D BOQ54_01045 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BOQ54_04235 transketolase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D BOQ54_09385 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D BOQ54_09390 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D BOQ54_03605 hypothetical protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_17170 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_09395 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] C 00030 Pentose phosphate pathway [PATH:cdq00030] D BOQ54_05375 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BOQ54_09835 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BOQ54_11970 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D BOQ54_13830 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] D BOQ54_01200 transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2] D BOQ54_07015 ribose 5-phosphate isomerase A K01807 rpiA; ribose 5-phosphate isomerase A [EC:5.3.1.6] D BOQ54_15260 Fe-S cluster assembly protein HesB K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D BOQ54_05080 deoxyribose-phosphate aldolase K01619 deoC; deoxyribose-phosphate aldolase [EC:4.1.2.4] D BOQ54_16055 hypothetical protein K00852 rbsK; ribokinase [EC:2.7.1.15] D BOQ54_16080 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D BOQ54_16165 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D BOQ54_10845 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN K05774 phnN; ribose 1,5-bisphosphokinase [EC:2.7.4.23] D BOQ54_09170 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BOQ54_13735 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BOQ54_09840 phosphogluconate dehydratase K01690 edd; phosphogluconate dehydratase [EC:4.2.1.12] D BOQ54_09870 keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D BOQ54_10025 sugar dehydrogenase K00034 gdh; glucose 1-dehydrogenase [EC:1.1.1.47] D BOQ54_10020 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D BOQ54_06725 2-dehydro-3-deoxygluconokinase K00874 kdgK; 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45] D BOQ54_14035 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D BOQ54_13850 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BOQ54_11190 fructose-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] C 00040 Pentose and glucuronate interconversions [PATH:cdq00040] D BOQ54_11035 5-dehydro-4-deoxy-D-glucuronate isomerase K01815 kduI; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase [EC:5.3.1.17] D BOQ54_11040 2-deoxy-D-gluconate 3-dehydrogenase K00065 kduD; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase [EC:1.1.1.127] D BOQ54_01540 glucuronate isomerase K01812 uxaC; glucuronate isomerase [EC:5.3.1.12] D BOQ54_07870 mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D BOQ54_11045 mannonate dehydratase K01686 uxuA; mannonate dehydratase [EC:4.2.1.8] D BOQ54_01545 mannitol dehydrogenase K00040 uxuB; fructuronate reductase [EC:1.1.1.57] D BOQ54_18380 glycosyl hydrolase family 2 K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D BOQ54_08550 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D BOQ54_14130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BOQ54_11970 ribulose-phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1] D BOQ54_08900 carbohydrate kinase K00854 xylB; xylulokinase [EC:2.7.1.17] D BOQ54_09850 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D BOQ54_15295 xylulokinase K00854 xylB; xylulokinase [EC:2.7.1.17] D BOQ54_10165 L-rhamnose catabolism isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-] D BOQ54_15250 alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D BOQ54_18295 3-oxoacyl-ACP reductase K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175] D BOQ54_07480 3-oxoacyl-ACP reductase K22185 xylB; D-xylose 1-dehydrogenase [EC:1.1.1.175] D BOQ54_14695 dihydroxy-acid dehydratase K22186 xylD; xylonate dehydratase [EC:4.2.1.82] D BOQ54_10825 aldehyde dehydrogenase family protein K22187 xylA; alpha-ketoglutaric semialdehyde dehydrogenase [EC:1.2.1.-] D BOQ54_15285 hypothetical protein K00875 rbtK; D-ribulokinase [EC:2.7.1.47] D BOQ54_18535 class II aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] C 00051 Fructose and mannose metabolism [PATH:cdq00051] D BOQ54_09830 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D BOQ54_18740 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D BOQ54_16165 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D BOQ54_18750 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D BOQ54_18755 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D BOQ54_18535 class II aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17] D BOQ54_01515 pyridoxal 4-dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D BOQ54_04130 amidohydrolase K07046 E3.1.1.120; L-fucono-1,5-lactonase [EC:3.1.1.120] D BOQ54_17655 NAD(P)-dependent oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D BOQ54_14680 NAD(P)-dependent oxidoreductase K18335 E1.1.1.434; 2-dehydro-3-deoxy-L-fuconate 4-dehydrogenase [EC:1.1.1.434] D BOQ54_01270 3-oxoacyl-ACP reductase K21883 lra5; 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) [EC:1.1.1.401] D BOQ54_04120 3-oxoacyl-ACP reductase K21883 lra5; 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) [EC:1.1.1.401] D BOQ54_10165 L-rhamnose catabolism isomerase K01820 rhaA; L-rhamnose isomerase / sugar isomerase [EC:5.3.1.14 5.3.1.-] D BOQ54_11190 fructose-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D BOQ54_15250 alcohol dehydrogenase K00008 SORD; L-iditol 2-dehydrogenase [EC:1.1.1.14] D BOQ54_13850 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BOQ54_09325 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BOQ54_01020 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D BOQ54_03645 PTS cellobiose transporter subunit IIB K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D BOQ54_03640 PTS sorbitol transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D BOQ54_03635 PTS sorbitol transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component C 00052 Galactose metabolism [PATH:cdq00052] D BOQ54_06705 galactose mutarotase K01785 galM; aldose 1-epimerase [EC:5.1.3.3] D BOQ54_18285 nucleoside-diphosphate sugar epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_14125 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_18455 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_14130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BOQ54_16165 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D BOQ54_14370 hypothetical protein K00845 glk; glucokinase [EC:2.7.1.2] D BOQ54_03660 PTS sugar transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D BOQ54_03655 PTS galactitol transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D BOQ54_03665 PTS sugar transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D BOQ54_03565 tagatose-bisphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40] D BOQ54_01560 hypothetical protein K00883 dgoK; 2-dehydro-3-deoxygalactonokinase [EC:2.7.1.58] D BOQ54_12825 2-dehydro-3-deoxy-6-phosphogalactonate aldolase K01631 dgoA; 2-dehydro-3-deoxyphosphogalactonate aldolase [EC:4.1.2.21] D BOQ54_18360 hypothetical protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] C 00053 Ascorbate and aldarate metabolism [PATH:cdq00053] D BOQ54_08550 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D BOQ54_18380 glycosyl hydrolase family 2 K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D BOQ54_10020 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D BOQ54_01515 pyridoxal 4-dehydrogenase K00064 E1.1.1.122; D-threo-aldose 1-dehydrogenase [EC:1.1.1.122] D BOQ54_14815 capsular biosynthesis protein CpsI K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_16350 dihydroxy-acid dehydratase K13875 araC; L-arabonate dehydrase [EC:4.2.1.25] D BOQ54_18660 mandelate racemase/muconate lactonizing protein K18983 gci; D-galactarolactone cycloisomerase [EC:5.5.1.27] C 00500 Starch and sucrose metabolism [PATH:cdq00500] D BOQ54_18360 hypothetical protein K01187 malZ; alpha-glucosidase [EC:3.2.1.20] D BOQ54_14130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BOQ54_00175 alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] D BOQ54_00185 trehalose-phosphatase K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] D BOQ54_16165 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D BOQ54_14370 hypothetical protein K00845 glk; glucokinase [EC:2.7.1.2] D BOQ54_05375 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BOQ54_09830 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cdq00520] D BOQ54_10400 beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D BOQ54_16885 N-acetylglucosamine-6-phosphate deacetylase K01443 nagA; N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] D BOQ54_12300 N-acetylglucosamine kinase K18676 gspK; glucosamine kinase [EC:2.7.1.8] D BOQ54_09830 hypothetical protein K00847 E2.7.1.4; fructokinase [EC:2.7.1.4] D BOQ54_16890 aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BOQ54_09780 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BOQ54_13615 phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10] D BOQ54_09775 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D BOQ54_14405 anhydro-N-acetylmuramic acid kinase K09001 anmK; anhydro-N-acetylmuramic acid kinase [EC:2.7.1.170] D BOQ54_00245 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE K07102 amgK; N-acetylmuramate 1-kinase [EC:2.7.1.221] D BOQ54_00250 mannose-1-phosphate guanylyltransferase K00992 murU; N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase [EC:2.7.7.99] D BOQ54_03750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BOQ54_12655 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BOQ54_14810 UDP-N-acetyl-D-galactosamine dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] D BOQ54_17945 alpha-N-arabinofuranosidase K01209 abfA; alpha-L-arabinofuranosidase [EC:3.2.1.55] D BOQ54_12360 NAD-dependent dehydratase K08678 UXS1; UDP-glucuronate decarboxylase [EC:4.1.1.35] D BOQ54_14370 hypothetical protein K00845 glk; glucokinase [EC:2.7.1.2] D BOQ54_16165 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D BOQ54_14130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BOQ54_08550 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D BOQ54_18285 nucleoside-diphosphate sugar epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_14125 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_18455 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_14815 capsular biosynthesis protein CpsI K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D BOQ54_01020 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D BOQ54_05375 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BOQ54_18740 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D BOQ54_18750 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D BOQ54_18755 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] C 00620 Pyruvate metabolism [PATH:cdq00620] D BOQ54_01885 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_02100 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_04235 transketolase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D BOQ54_09385 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D BOQ54_09390 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D BOQ54_03605 hypothetical protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_17170 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_09395 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_08710 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D BOQ54_19045 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BOQ54_08725 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BOQ54_08720 enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BOQ54_14045 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BOQ54_00660 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BOQ54_08860 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BOQ54_08855 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BOQ54_01005 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BOQ54_11240 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17160 aldehyde dehydrogenase K00138 aldB; aldehyde dehydrogenase [EC:1.2.1.-] D BOQ54_17075 alpha-hydroxy-acid oxidizing enzyme K00101 lldD; L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] D BOQ54_12555 FAD-binding oxidoreductase K00102 LDHD; D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] D BOQ54_06700 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D BOQ54_02900 lactoylglutathione lyase K01759 GLO1; lactoylglutathione lyase [EC:4.4.1.5] D BOQ54_00670 hydroxyacylglutathione hydrolase K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6] D BOQ54_16905 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BOQ54_16015 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BOQ54_16670 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D BOQ54_10430 NADP-dependent malic enzyme K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] D BOQ54_07405 pyruvate carboxylase K01958 PC; pyruvate carboxylase [EC:6.4.1.1] D BOQ54_01960 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BOQ54_14375 fumarate hydratase K01676 E4.2.1.2A; fumarate hydratase, class I [EC:4.2.1.2] D BOQ54_12530 fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2] D BOQ54_01045 phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] D BOQ54_05945 pyruvate, phosphate dikinase K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] D BOQ54_10075 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_12390 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D BOQ54_07140 citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cdq00630] D BOQ54_01885 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_02100 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_10075 malate synthase G K01638 aceB; malate synthase [EC:2.3.3.9] D BOQ54_01960 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BOQ54_09270 citrate (Si)-synthase K01647 CS; citrate synthase [EC:2.3.3.1] D BOQ54_18635 citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D BOQ54_18640 citrate synthase/methylcitrate synthase K01647 CS; citrate synthase [EC:2.3.3.1] D BOQ54_02290 aconitate hydratase 1 K01681 ACO; aconitate hydratase [EC:4.2.1.3] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02350 beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D BOQ54_05415 acyl dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D BOQ54_02760 crotonyl-CoA carboxylase/reductase K14446 ccr; crotonyl-CoA carboxylase/reductase [EC:1.3.1.85] D BOQ54_09135 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D BOQ54_02765 protein meaA K14447 ecm; ethylmalonyl-CoA mutase [EC:5.4.99.63] D BOQ54_02770 acyl-CoA dehydrogenase K14448 mcd; (2S)-methylsuccinyl-CoA dehydrogenase [EC:1.3.8.12] D BOQ54_02010 hypothetical protein K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D BOQ54_08925 CoA ester lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D BOQ54_11255 acetyl/propionyl-CoA carboxylase subuit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D BOQ54_11285 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D BOQ54_08605 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D BOQ54_08610 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D BOQ54_05325 FAD-binding oxidoreductase K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14] D BOQ54_05330 2-hydroxy-acid oxidase K11472 glcE; glycolate dehydrogenase FAD-binding subunit [EC:1.1.99.14] D BOQ54_05335 2-hydroxy-acid oxidase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14] D BOQ54_07880 catalase K03781 katE; catalase [EC:1.11.1.6] D BOQ54_00165 D-glycerate dehydrogenase K00015 gyaR; glyoxylate reductase [EC:1.1.1.26] D BOQ54_16905 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BOQ54_16015 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BOQ54_07760 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D BOQ54_17425 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D BOQ54_11295 HAD family hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D BOQ54_07005 phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18] D BOQ54_07685 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_08985 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_08095 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BOQ54_05715 glycine dehydrogenase (aminomethyl-transferring) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D BOQ54_05710 glycine dehydrogenase (aminomethyl-transferring) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D BOQ54_05725 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_05720 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D BOQ54_14035 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D BOQ54_16920 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D BOQ54_09870 keto-deoxy-phosphogluconate aldolase K01625 eda; 2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.42] D BOQ54_04155 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D BOQ54_07330 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D BOQ54_04160 NADH-quinone oxidoreductase subunit F K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9] D BOQ54_07335 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit D BOQ54_07340 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D BOQ54_10970 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D BOQ54_10760 N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] C 00640 Propanoate metabolism [PATH:cdq00640] D BOQ54_01885 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_02100 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_13925 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D BOQ54_08725 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BOQ54_08720 enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BOQ54_12920 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D BOQ54_12925 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D BOQ54_15435 MFS transporter K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D BOQ54_12930 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_05990 oxidoreductase K19745 acuI; acrylyl-CoA reductase (NADPH) [EC:1.3.1.-] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_00660 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BOQ54_08860 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BOQ54_08855 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BOQ54_01005 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BOQ54_10925 MCD, Malonyl-CoA decarboxylase MCD K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D BOQ54_17640 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D BOQ54_05430 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D BOQ54_11255 acetyl/propionyl-CoA carboxylase subuit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D BOQ54_11285 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D BOQ54_09135 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D BOQ54_08605 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D BOQ54_08610 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D BOQ54_01955 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D BOQ54_01950 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D BOQ54_07830 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D BOQ54_01175 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D BOQ54_16595 methylglyoxal synthase K01734 mgsA; methylglyoxal synthase [EC:4.2.3.3] C 00650 Butanoate metabolism [PATH:cdq00650] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_04295 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_05415 acyl dehydratase K17865 croR; 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] D BOQ54_08715 poly-beta-hydroxybutyrate polymerase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D BOQ54_11210 class I poly(R)-hydroxyalkanoic acid synthase K03821 phaC; poly[(R)-3-hydroxyalkanoate] polymerase subunit PhaC [EC:2.3.1.304] D BOQ54_01070 esterase K05973 phaZ; poly(3-hydroxybutyrate) depolymerase [EC:3.1.1.75] D BOQ54_02350 beta-ketoacyl-ACP reductase K00023 phbB; acetoacetyl-CoA reductase [EC:1.1.1.36] D BOQ54_18970 3-oxoadipate--succinyl-CoA transferase subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D BOQ54_18975 3-oxoadipate--succinyl-CoA transferase subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] D BOQ54_16920 tartrate dehydrogenase K07246 ttuC; tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] D BOQ54_01995 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BOQ54_01990 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BOQ54_02005 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D BOQ54_02000 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D BOQ54_17640 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D BOQ54_16925 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_17080 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_03405 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_00090 4-hydroxybutyrate dehydrogenase K00043 gbd; 4-hydroxybutyrate dehydrogenase [EC:1.1.1.61] D BOQ54_07710 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D BOQ54_01470 3-hydroxybutyrate dehydrogenase K00019 BDH1; 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30] D BOQ54_12470 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_17635 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_19010 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_01205 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_12460 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] C 00660 C5-Branched dibasic acid metabolism [PATH:cdq00660] D BOQ54_12470 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_17635 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_19010 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_01205 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_12460 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D BOQ54_01955 succinate--CoA ligase subunit beta K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5] D BOQ54_01950 succinate--CoA ligase subunit alpha K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] D BOQ54_08925 CoA ester lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D BOQ54_02010 hypothetical protein K14449 mch; 2-methylfumaryl-CoA hydratase [EC:4.2.1.148] D BOQ54_02930 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D BOQ54_02915 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D BOQ54_02895 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] C 00562 Inositol phosphate metabolism [PATH:cdq00562] D BOQ54_03710 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BOQ54_13865 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BOQ54_05555 3'(2'),5'-bisphosphate nucleotidase CysQ K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BOQ54_06370 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D BOQ54_03500 oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D BOQ54_05105 xylose isomerase K06606 iolI; 2-keto-myo-inositol isomerase [EC:5.3.99.11] D BOQ54_06380 myo-inosose-2 dehydratase K03335 iolE; inosose dehydratase [EC:4.2.1.44] D BOQ54_06385 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) K03336 iolD; 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) [EC:3.7.1.22] D BOQ54_06375 5-deoxy-glucuronate isomerase K03337 iolB; 5-deoxy-glucuronate isomerase [EC:5.3.1.30] D BOQ54_06390 5-dehydro-2-deoxygluconokinase K03338 iolC; 5-dehydro-2-deoxygluconokinase [EC:2.7.1.92] D BOQ54_07830 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D BOQ54_01175 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D BOQ54_09325 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] B B 09102 Energy metabolism C 00190 Oxidative phosphorylation [PATH:cdq00190] D BOQ54_09050 NADH-quinone oxidoreductase subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2] D BOQ54_09055 NADH dehydrogenase K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2] D BOQ54_09060 NADH-quinone oxidoreductase subunit C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2] D BOQ54_09065 NADH dehydrogenase K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2] D BOQ54_09075 NADH-quinone oxidoreductase subunit E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2] D BOQ54_09080 NADH-quinone oxidoreductase subunit F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2] D BOQ54_09085 NADH-quinone oxidoreductase subunit G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2] D BOQ54_09090 NADH-quinone oxidoreductase subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2] D BOQ54_09095 NADH-quinone oxidoreductase subunit I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2] D BOQ54_09100 NADH:ubiquinone oxidoreductase subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2] D BOQ54_09105 NADH-quinone oxidoreductase subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2] D BOQ54_09110 NADH-quinone oxidoreductase subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2] D BOQ54_09115 NADH-quinone oxidoreductase subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2] D BOQ54_09120 NADH-quinone oxidoreductase subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2] D BOQ54_01995 succinate dehydrogenase flavoprotein subunit K00239 sdhA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1] D BOQ54_01990 succinate dehydrogenase iron-sulfur subunit K00240 sdhB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1] D BOQ54_02005 succinate dehydrogenase, cytochrome b556 subunit K00241 sdhC; succinate dehydrogenase cytochrome b subunit D BOQ54_02000 succinate dehydrogenase, hydrophobic membrane anchor protein K00242 sdhD; succinate dehydrogenase membrane anchor subunit D BOQ54_13260 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D BOQ54_13250 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D BOQ54_13255 cytochrome b K00410 fbcH; ubiquinol-cytochrome c reductase cytochrome b/c1 subunit D BOQ54_05750 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D BOQ54_18330 cytochrome C oxidase subunit IV K02277 coxD; cytochrome c oxidase subunit IV [EC:7.1.1.9] D BOQ54_18335 bb3-type cytochrome oxidase subunit IV K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D BOQ54_18340 cytochrome-c oxidase K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D BOQ54_05765 cytochrome c oxidase subunit 3 K02276 coxC; cytochrome c oxidase subunit III [EC:7.1.1.9] D BOQ54_18345 cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D BOQ54_05745 cytochrome c oxidase subunit I K02274 coxA; cytochrome c oxidase subunit I [EC:7.1.1.9] D BOQ54_15515 cytochrome c oxidase subunit I K15408 coxAC; cytochrome c oxidase subunit I+III [EC:7.1.1.9] D BOQ54_18350 cytochrome-c oxidase K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D BOQ54_05740 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D BOQ54_15510 cytochrome c oxidase subunit II K02275 coxB; cytochrome c oxidase subunit II [EC:7.1.1.9] D BOQ54_05760 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D BOQ54_08270 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D BOQ54_03460 cytochrome-c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D BOQ54_03455 cytochrome-c oxidase, cbb3-type subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D BOQ54_03450 cytochrome C oxidase Cbb3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D BOQ54_03445 cytochrome-c oxidase, cbb3-type subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D BOQ54_18840 cytochrome d terminal oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BOQ54_05860 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BOQ54_18845 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BOQ54_05855 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BOQ54_18850 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D BOQ54_09675 cytochrome C K08738 CYC; cytochrome c D BOQ54_18355 cytochrome c family protein K08738 CYC; cytochrome c D BOQ54_06730 cytochrome c family protein K08738 CYC; cytochrome c D BOQ54_16110 cytochrome c family protein K08738 CYC; cytochrome c D BOQ54_07280 hypothetical protein K08738 CYC; cytochrome c D BOQ54_03345 cytochrome c family protein K08738 CYC; cytochrome c D BOQ54_01905 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D BOQ54_01895 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D BOQ54_01900 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D BOQ54_01910 ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D BOQ54_01890 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D BOQ54_05685 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D BOQ54_05695 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b D BOQ54_05700 ATP F0F1 synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D BOQ54_05690 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D BOQ54_03950 inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1] D BOQ54_10490 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] C 00195 Photosynthesis C 00196 Photosynthesis - antenna proteins C 00710 Carbon fixation in photosynthetic organisms C 00720 Carbon fixation pathways in prokaryotes C 00680 Methane metabolism [PATH:cdq00680] D BOQ54_19045 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BOQ54_19050 S-formylglutathione hydrolase K01070 frmB; S-formylglutathione hydrolase [EC:3.1.2.12] D BOQ54_04155 formate dehydrogenase subunit alpha K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D BOQ54_07330 formate dehydrogenase K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9] D BOQ54_04160 NADH-quinone oxidoreductase subunit F K22515 fdwB; formate dehydrogenase beta subunit [EC:1.17.1.9] D BOQ54_07335 formate dehydrogenase K00124 fdoH; formate dehydrogenase iron-sulfur subunit D BOQ54_07340 formate dehydrogenase subunit gamma K00127 fdoI; formate dehydrogenase subunit gamma D BOQ54_08095 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BOQ54_14035 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D BOQ54_09375 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BOQ54_01960 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BOQ54_08925 CoA ester lyase K08691 mcl; malyl-CoA/(S)-citramalyl-CoA lyase [EC:4.1.3.24 4.1.3.25] D BOQ54_13850 fructose-1,6-bisphosphate aldolase K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13] D BOQ54_11190 fructose-bisphosphatase, class II K11532 glpX-SEBP; fructose-1,6-bisphosphatase II / sedoheptulose-1,7-bisphosphatase [EC:3.1.3.11 3.1.3.37] D BOQ54_15260 Fe-S cluster assembly protein HesB K08094 hxlB; 6-phospho-3-hexuloisomerase [EC:5.3.1.27] D BOQ54_08725 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] D BOQ54_08720 enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BOQ54_01885 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_02100 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_16720 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BOQ54_13580 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BOQ54_13585 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BOQ54_12480 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 00910 Nitrogen metabolism [PATH:cdq00910] D BOQ54_07220 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D BOQ54_07205 bicarbonate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D BOQ54_07210 nitrate ABC transporter, permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D BOQ54_07215 nitrate ABC transporter ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D BOQ54_17875 nitrate reductase catalytic subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1] D BOQ54_17870 periplasmic nitrate reductase electron transfer subunit K02568 napB; nitrate reductase (cytochrome), electron transfer subunit D BOQ54_07235 nitrate reductase K00372 nasC; assimilatory nitrate reductase catalytic subunit [EC:1.7.99.-] D BOQ54_07225 nitrite reductase large subunit K26139 nasD; nitrite reductase [NAD(P)H] large subunit [EC:1.7.1.4] D BOQ54_07230 tRNA-(guanine-N1)-methyltransferase K26138 nasE; nitrite reductase [NAD(P)H] small subunit [EC:1.7.1.4] D BOQ54_18005 nitrite reductase, copper-containing K00368 nirK; nitrite reductase (NO-forming) [EC:1.7.2.1] D BOQ54_17905 nitric-oxide reductase large subunit K04561 norB; nitric oxide reductase subunit B [EC:1.7.2.5] D BOQ54_17910 cytochrome C K02305 norC; nitric oxide reductase subunit C D BOQ54_17355 nitrous-oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4] D BOQ54_00585 nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16] D BOQ54_02160 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D BOQ54_07685 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_08985 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_14105 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D BOQ54_14110 gltD; glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D BOQ54_18780 carbonic anhydrase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D BOQ54_02875 carbonate dehydratase K01673 cynT; carbonic anhydrase [EC:4.2.1.1] D BOQ54_05305 carbonate dehydratase K01674 cah; carbonic anhydrase [EC:4.2.1.1] C 00920 Sulfur metabolism [PATH:cdq00920] D BOQ54_12425 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D BOQ54_12430 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D BOQ54_12435 mannosyltransferase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D BOQ54_18705 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D BOQ54_15720 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D BOQ54_18710 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BOQ54_15725 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BOQ54_15705 hypothetical protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D BOQ54_15735 phosphoadenosine phosphosulfate reductase K00390 cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10] D BOQ54_09635 sulfur oxidation c-type cytochrome SoxA K17222 soxA; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D BOQ54_09650 sulfur oxidation c-type cytochrome SoxX K17223 soxX; L-cysteine S-thiosulfotransferase [EC:2.8.5.2] D BOQ54_09645 sulfur oxidation protein SoxY K17226 soxY; sulfur-oxidizing protein SoxY D BOQ54_09640 thiosulfate oxidation carrier complex protein SoxZ K17227 soxZ; sulfur-oxidizing protein SoxZ D BOQ54_15740 sulfite reductase K00381 cysI; sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2] D BOQ54_09655 cytochrome C K17229 fccB; sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [EC:1.8.2.3] D BOQ54_09660 cytochrome C K17230 fccA; cytochrome subunit of sulfide dehydrogenase D BOQ54_08685 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D BOQ54_11710 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D BOQ54_12275 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BOQ54_04190 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D BOQ54_09555 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BOQ54_00495 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BOQ54_02850 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D BOQ54_02785 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D BOQ54_19145 acyl-CoA synthase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D BOQ54_13940 acyl-CoA synthetase K20034 dmdB; 3-(methylthio)propionyl---CoA ligase [EC:6.2.1.44] D BOQ54_06015 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] D BOQ54_15850 acyl-CoA dehydrogenase K20035 dmdC; 3-(methylsulfanyl)propanoyl-CoA dehydrogenase [EC:1.3.99.41] B B 09103 Lipid metabolism C 00061 Fatty acid biosynthesis [PATH:cdq00061] D BOQ54_00660 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15] D BOQ54_08860 acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein D BOQ54_08855 acetyl-CoA carboxylase biotin carboxylase subunit K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] D BOQ54_01005 acetyl-CoA carboxylase subunit beta K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15] D BOQ54_07585 acyl carrier protein K02078 acpP; acyl carrier protein D BOQ54_07575 [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BOQ54_07820 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BOQ54_08160 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BOQ54_00200 beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D BOQ54_07590 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_02270 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_02275 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_03570 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_07580 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_12365 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_13355 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_15475 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_15480 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_00380 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_02265 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_07845 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_00195 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D BOQ54_09250 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BOQ54_02280 beta-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BOQ54_06175 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BOQ54_00205 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BOQ54_13035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_05225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_14205 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] C 00062 Fatty acid elongation C 00071 Fatty acid degradation [PATH:cdq00071] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_19140 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D BOQ54_01215 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D BOQ54_13035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_05225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_14205 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_19045 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BOQ54_08710 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00073 Cutin, suberine and wax biosynthesis C 00100 Steroid biosynthesis C 00120 Primary bile acid biosynthesis C 00121 Secondary bile acid biosynthesis C 00140 Steroid hormone biosynthesis C 00561 Glycerolipid metabolism [PATH:cdq00561] D BOQ54_14035 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_01290 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D BOQ54_08155 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D BOQ54_10610 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BOQ54_02815 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D BOQ54_07070 hypothetical protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D BOQ54_12195 alpha-mannosyltransferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] C 00564 Glycerophospholipid metabolism [PATH:cdq00564] D BOQ54_02065 glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] D BOQ54_01295 glycerol-3-phosphate dehydrogenase K00111 glpA; glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] D BOQ54_10610 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BOQ54_02815 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] D BOQ54_07070 hypothetical protein K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107] D BOQ54_14085 alpha/beta hydrolase K01048 pldB; lysophospholipase [EC:3.1.1.5] D BOQ54_13935 glycerophosphodiester phosphodiesterase K01126 E3.1.4.46; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] D BOQ54_17020 ethanolamine ammonia-lyase K03735 eutB; ethanolamine ammonia-lyase large subunit [EC:4.3.1.7] D BOQ54_17015 ethanolamine ammonia-lyase K03736 eutC; ethanolamine ammonia-lyase small subunit [EC:4.3.1.7] D BOQ54_16690 phospholipid methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D BOQ54_15630 SAM-dependent methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D BOQ54_01835 SAM-dependent methyltransferase K00570 pmtA; phosphatidylethanolamine/phosphatidyl-N-methylethanolamine N-methyltransferase [EC:2.1.1.17 2.1.1.71] D BOQ54_09225 hypothetical protein K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41] D BOQ54_07165 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D BOQ54_07160 phosphatidylserine decarboxylase K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65] D BOQ54_08220 cardiolipin synthase K06131 clsA_B; cardiolipin synthase A/B [EC:2.7.8.-] D BOQ54_13715 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] D BOQ54_10505 CDP-alcohol phosphatidyltransferase K08744 CRLS; cardiolipin synthase (CMP-forming) [EC:2.7.8.41] C 00565 Ether lipid metabolism C 00600 Sphingolipid metabolism C 00590 Arachidonic acid metabolism C 00591 Linoleic acid metabolism C 00592 alpha-Linolenic acid metabolism C 01040 Biosynthesis of unsaturated fatty acids [PATH:cdq01040] D BOQ54_02190 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D BOQ54_12780 hypothetical protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D BOQ54_01605 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] B B 09104 Nucleotide metabolism C 00230 Purine metabolism [PATH:cdq00230] D BOQ54_16080 phosphopentomutase K01839 deoB; phosphopentomutase [EC:5.4.2.7] D BOQ54_16165 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D BOQ54_09170 ribose-phosphate pyrophosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BOQ54_13735 phosphoribosylpyrophosphate synthetase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1] D BOQ54_07935 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D BOQ54_05515 phosphoribosylamine--glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13] D BOQ54_10515 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D BOQ54_04365 phosphoribosylformylglycinamidine synthase II K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3] D BOQ54_04380 phosphoribosylformylglycinamidine synthase K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3] D BOQ54_04375 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D BOQ54_10510 phosphoribosylformylglycinamidine cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] D BOQ54_13960 5-(carboxyamino)imidazole ribonucleotide synthase K01589 purK; 5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18] D BOQ54_13955 5-(carboxyamino)imidazole ribonucleotide mutase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] D BOQ54_04385 phosphoribosylaminoimidazolesuccinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] D BOQ54_11975 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D BOQ54_02105 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BOQ54_13245 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D BOQ54_14165 bifunctional metallophosphatase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BOQ54_03580 hypothetical protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BOQ54_10360 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BOQ54_16465 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D BOQ54_13210 polyphenol oxidase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D BOQ54_02795 hypoxanthine phosphoribosyltransferase K00760 hprT; hypoxanthine phosphoribosyltransferase [EC:2.4.2.8] D BOQ54_07770 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D BOQ54_10530 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D BOQ54_16775 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66] D BOQ54_11765 xanthine phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22] D BOQ54_06710 xanthine dehydrogenase small subunit K13481 xdhA; xanthine dehydrogenase small subunit [EC:1.17.1.4] D BOQ54_06715 xanthine dehydrogenase molybdopterin binding subunit K13482 xdhB; xanthine dehydrogenase large subunit [EC:1.17.1.4] D BOQ54_07785 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BOQ54_02050 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BOQ54_13570 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BOQ54_00590 guanine deaminase K01487 guaD; guanine deaminase [EC:3.5.4.3] D BOQ54_07605 guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8] D BOQ54_09745 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BOQ54_10415 deoxyguanosinetriphosphate triphosphohydrolase K01129 dgt; dGTPase [EC:3.1.5.1] D BOQ54_06110 hydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D BOQ54_07535 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D BOQ54_07745 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D BOQ54_10485 exopolyphosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] D BOQ54_15305 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D BOQ54_08495 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D BOQ54_08500 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D BOQ54_12960 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D BOQ54_17405 adenylate/guanylate cyclase domain-containing protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D BOQ54_08770 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D BOQ54_02320 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D BOQ54_15785 hypothetical protein K01768 E4.6.1.1; adenylate cyclase [EC:4.6.1.1] D BOQ54_13565 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D BOQ54_12775 AMP nucleosidase K01241 amn; AMP nucleosidase [EC:3.2.2.4] D BOQ54_08440 adenine deaminase K01486 ade; adenine deaminase [EC:3.5.4.2] D BOQ54_13805 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D BOQ54_11335 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D BOQ54_09465 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D BOQ54_18705 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D BOQ54_15720 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D BOQ54_18710 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BOQ54_15725 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BOQ54_12270 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D BOQ54_19160 Asp/Glu/hydantoin racemase K16841 hpxA; allantoin racemase [EC:5.1.99.3] D BOQ54_00105 OHCU decarboxylase K16842 hpxB; allantoinase [EC:3.5.2.5] D BOQ54_01265 Zn-dependent hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D BOQ54_17690 hypothetical protein K01483 allA; ureidoglycolate lyase [EC:4.3.2.3] D BOQ54_15185 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D BOQ54_15170 Urease subunit alpha K14048 ureAB; urease subunit gamma/beta [EC:3.5.1.5] C 00240 Pyrimidine metabolism [PATH:cdq00240] D BOQ54_12995 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D BOQ54_12990 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D BOQ54_10620 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D BOQ54_06275 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D BOQ54_10615 dihydroorotase K01465 URA4; dihydroorotase [EC:3.5.2.3] D BOQ54_06265 dihydroorotate dehydrogenase B catalytic subunit K17828 pyrDI; dihydroorotate dehydrogenase (NAD+) catalytic subunit [EC:1.3.1.14] D BOQ54_06260 dihydroorotate dehydrogenase electron transfer subunit K02823 pyrDII; dihydroorotate dehydrogenase electron transfer subunit D BOQ54_15920 dihydroorotate dehydrogenase (quinone) K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2] D BOQ54_06280 orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10] D BOQ54_16700 orotidine 5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] D BOQ54_09210 UMP kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22] D BOQ54_10530 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D BOQ54_09465 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D BOQ54_07175 septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D BOQ54_00790 septum formation inhibitor Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-] D BOQ54_09335 CTP synthase K01937 pyrG; CTP synthase [EC:6.3.4.2] D BOQ54_16585 cytidylate kinase K00945 cmk; CMP/dCMP kinase [EC:2.7.4.25] D BOQ54_14165 bifunctional metallophosphatase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BOQ54_03580 hypothetical protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BOQ54_10360 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BOQ54_16060 uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9] D BOQ54_13805 metallophosphoesterase K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] D BOQ54_01920 pseudouridine-5-phosphate glycosidase K16329 psuG; pseudouridylate synthase [EC:4.2.1.70] D BOQ54_16470 cytidine deaminase K01489 cdd; cytidine deaminase [EC:3.5.4.5] D BOQ54_14620 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D BOQ54_02435 2'-deoxycytidine 5'-triphosphate deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13] D BOQ54_09745 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D BOQ54_06110 hydrolase K06952 yfdR; 5'-nucleotidase [EC:3.1.3.89] D BOQ54_10050 dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9] D BOQ54_00505 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BOQ54_16010 thymidine phosphorylase K00758 deoA; thymidine phosphorylase [EC:2.4.2.4] D BOQ54_12515 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D BOQ54_17600 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D BOQ54_17700 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D BOQ54_06270 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] B B 09105 Amino acid metabolism C 00250 Alanine, aspartate and glutamate metabolism [PATH:cdq00250] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_05970 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D BOQ54_15580 beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D BOQ54_12840 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D BOQ54_15980 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BOQ54_00470 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BOQ54_13565 adenylosuccinate synthase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4] D BOQ54_11975 adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2] D BOQ54_10620 aspartate carbamoyltransferase K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] D BOQ54_17640 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D BOQ54_16925 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_17080 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_03405 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_14105 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D BOQ54_14110 gltD; glutamate synthase K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13] D BOQ54_02160 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D BOQ54_01860 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BOQ54_07685 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_08985 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_12995 carbamoyl phosphate synthase large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] D BOQ54_12990 carbamoyl phosphate synthase small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] D BOQ54_04375 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D BOQ54_16890 aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BOQ54_09780 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BOQ54_07935 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] C 00260 Glycine, serine and threonine metabolism [PATH:cdq00260] D BOQ54_02735 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BOQ54_02880 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BOQ54_11195 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D BOQ54_05635 homoserine kinase K02204 thrB2; homoserine kinase type II [EC:2.7.1.39] D BOQ54_05780 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] D BOQ54_14100 low specificity L-threonine aldolase K01620 ltaE; threonine aldolase [EC:4.1.2.48] D BOQ54_08095 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BOQ54_16905 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BOQ54_16015 glyoxylate/hydroxypyruvate reductase A K12972 ghrA; glyoxylate/hydroxypyruvate reductase [EC:1.1.1.79 1.1.1.81] D BOQ54_14035 glycerate kinase K11529 gck; glycerate 2-kinase [EC:2.7.1.165] D BOQ54_16720 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BOQ54_13580 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BOQ54_13585 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BOQ54_12480 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] D BOQ54_03745 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D BOQ54_05715 glycine dehydrogenase (aminomethyl-transferring) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D BOQ54_05710 glycine dehydrogenase (aminomethyl-transferring) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D BOQ54_05725 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_05720 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein D BOQ54_07165 CDP-diacylglycerol--serine O-phosphatidyltransferase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8] D BOQ54_06960 N-methyltryptophan oxidase K00301 E1.5.3.1; sarcosine oxidase [EC:1.5.3.1] D BOQ54_08060 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_17565 hydroxyectoine utilization dehydratase EutB K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_05100 hypothetical protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_14530 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_02870 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_01000 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D BOQ54_00995 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D BOQ54_17555 ectoine hydrolase DoeA K15783 doeA; ectoine hydrolase [EC:3.5.4.44] D BOQ54_17550 N-alpha-acetyl diaminobutyric acid deacetylase DoeB K15784 doeB; N2-acetyl-L-2,4-diaminobutanoate deacetylase [EC:3.5.1.125] D BOQ54_17520 hypothetical protein K15785 doeD; L-2,4-diaminobutyrate transaminase [EC:2.6.1.76] D BOQ54_17525 NAD-dependent succinate-semialdehyde dehydrogenase K15786 doeC; aspartate-semialdehyde dehydrogenase [EC:1.2.1.-] C 00270 Cysteine and methionine metabolism [PATH:cdq00270] D BOQ54_11710 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D BOQ54_12275 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BOQ54_04190 cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47] D BOQ54_09555 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BOQ54_00495 cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47] D BOQ54_11085 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BOQ54_12745 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D BOQ54_00960 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D BOQ54_04505 hypothetical protein K22955 traI; acyl homoserine lactone synthase [EC:2.3.1.184] D BOQ54_03250 hypothetical protein K22955 traI; acyl homoserine lactone synthase [EC:2.3.1.184] D BOQ54_07775 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase K01243 mtnN; adenosylhomocysteine nucleosidase [EC:3.2.2.9] D BOQ54_13210 polyphenol oxidase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4] D BOQ54_12095 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D BOQ54_00235 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D BOQ54_00125 1-aminocyclopropane-1-carboxylate deaminase K01505 E3.5.99.7; 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7] D BOQ54_02735 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BOQ54_02880 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BOQ54_11195 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D BOQ54_02850 homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46] D BOQ54_02785 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D BOQ54_08285 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D BOQ54_08280 O-acetylhomoserine aminocarboxypropyltransferase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49] D BOQ54_08650 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_13700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_05585 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D BOQ54_16750 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_08685 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D BOQ54_01960 malate dehydrogenase K00024 mdh; malate dehydrogenase [EC:1.1.1.37] D BOQ54_13580 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BOQ54_13585 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00280 Valine, leucine and isoleucine degradation [PATH:cdq00280] D BOQ54_08650 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_13700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_13375 amino acid dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D BOQ54_12920 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D BOQ54_12925 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D BOQ54_15435 MFS transporter K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D BOQ54_12930 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_19140 acyl-CoA dehydrogenase K00249 ACADM; acyl-CoA dehydrogenase [EC:1.3.8.7] D BOQ54_08375 acyl-CoA dehydrogenase K00253 IVD; isovaleryl-CoA dehydrogenase [EC:1.3.8.4] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_11255 acetyl/propionyl-CoA carboxylase subuit alpha K01965 PCCA; propionyl-CoA carboxylase alpha subunit [EC:6.4.1.3] D BOQ54_11285 methylmalonyl-CoA carboxyltransferase K01966 PCCB; propionyl-CoA carboxylase beta subunit [EC:6.4.1.3 2.1.3.15] D BOQ54_09135 methylmalonyl-CoA epimerase K05606 MCEE; methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] D BOQ54_08605 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D BOQ54_08610 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D BOQ54_17315 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D BOQ54_06900 oxidoreductase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D BOQ54_01155 3-hydroxyisobutyrate dehydrogenase K00020 HIBADH; 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] D BOQ54_07830 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D BOQ54_01175 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10920 malonyl-CoA synthase K18661 matB; malonyl-CoA/methylmalonyl-CoA synthetase [EC:6.2.1.76 6.2.1.-] D BOQ54_05430 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D BOQ54_10735 carbamoyl-phosphate synthase subunit L K01968 MCCC1; 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] D BOQ54_08405 methylcrotonoyl-CoA carboxylase K01969 MCCC2; 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] D BOQ54_07710 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cdq00290] D BOQ54_08060 threonine ammonia-lyase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_17565 hydroxyectoine utilization dehydratase EutB K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_05100 hypothetical protein K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_14530 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_02870 threonine dehydratase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19] D BOQ54_02930 3-isopropylmalate dehydratase large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] D BOQ54_02915 3-isopropylmalate dehydratase small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] D BOQ54_02895 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85] D BOQ54_12470 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_17635 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_19010 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_01205 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_12460 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D BOQ54_12445 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D BOQ54_08760 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D BOQ54_03495 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D BOQ54_08650 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_13700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_13375 amino acid dehydrogenase K00263 E1.4.1.9; leucine dehydrogenase [EC:1.4.1.9] D BOQ54_12390 2-isopropylmalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] D BOQ54_07140 citramalate synthase K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13] C 00300 Lysine biosynthesis [PATH:cdq00300] D BOQ54_11195 homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3] D BOQ54_02735 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BOQ54_02880 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BOQ54_03540 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_01725 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_17750 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_18255 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_07500 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_00695 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_16715 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D BOQ54_13150 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D BOQ54_16000 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117] D BOQ54_02405 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D BOQ54_14390 aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D BOQ54_11005 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D BOQ54_16005 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D BOQ54_03910 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D BOQ54_04335 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D BOQ54_12690 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BOQ54_12685 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] C 00310 Lysine degradation [PATH:cdq00310] D BOQ54_01220 aldehyde dehydrogenase family protein K26061 amaB; L-aminoadipate-semialdehyde dehydrogenase D BOQ54_01940 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_01215 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_16925 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_17080 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_03405 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_01210 CoA transferase K01041 gcdG; glutaryl-CoA transferase [EC:2.8.3.-] D BOQ54_15800 lysine 2,3-aminomutase K01843 kamA; lysine 2,3-aminomutase [EC:5.4.3.2] D BOQ54_03000 class III aminotransferase K18013 kce; 3-keto-5-aminohexanoate cleavage enzyme [EC:2.3.1.247] D BOQ54_15585 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D BOQ54_11955 amino acid dehydrogenase K26064 amaD; D-lysine oxidase D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00220 Arginine biosynthesis [PATH:cdq00220] D BOQ54_02410 ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3] D BOQ54_15980 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BOQ54_00470 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BOQ54_05275 arginase K01476 rocF; arginase [EC:3.5.3.1] D BOQ54_15185 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D BOQ54_15170 Urease subunit alpha K14048 ureAB; urease subunit gamma/beta [EC:3.5.1.5] D BOQ54_04375 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D BOQ54_07685 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_08985 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_02160 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_00630 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] D BOQ54_01395 acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8] D BOQ54_11225 N-acetyl-gamma-glutamyl-phosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38] D BOQ54_02405 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D BOQ54_02420 acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] D BOQ54_08540 acetylornithine deacetylase (ArgE) K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] C 00330 Arginine and proline metabolism [PATH:cdq00330] D BOQ54_14595 creatininase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D BOQ54_02975 creatinine amidohydrolase K01470 E3.5.2.10; creatinine amidohydrolase [EC:3.5.2.10] D BOQ54_14620 cytosine deaminase K01485 codA; cytosine/creatinine deaminase [EC:3.5.4.1 3.5.4.21] D BOQ54_11230 agmatinase K01480 speB; agmatinase [EC:3.5.3.11] D BOQ54_14585 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D BOQ54_17145 carboxynorspermidine decarboxylase K13747 nspC; carboxynorspermidine decarboxylase [EC:4.1.1.96] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_14560 spermidine acetyltransferase K00657 speG; diamine N-acetyltransferase [EC:2.3.1.57] D BOQ54_06215 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_06310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_07680 hypothetical protein K09471 puuB; gamma-glutamylputrescine oxidase [EC:1.4.3.-] D BOQ54_05275 arginase K01476 rocF; arginase [EC:3.5.3.1] D BOQ54_05280 ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D BOQ54_13670 pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2] D BOQ54_01860 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BOQ54_04015 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D BOQ54_04010 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_15585 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] C 00340 Histidine metabolism [PATH:cdq00340] D BOQ54_05485 ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17] D BOQ54_05490 ATP phosphoribosyltransferase regulatory subunit K02502 hisZ; ATP phosphoribosyltransferase regulatory subunit D BOQ54_00845 phosphoribosyl-ATP diphosphatase K01523 hisE; phosphoribosyl-ATP pyrophosphohydrolase [EC:3.6.1.31] D BOQ54_11650 phosphoribosyl-AMP cyclohydrolase K01496 hisI; phosphoribosyl-AMP cyclohydrolase [EC:3.5.4.19] D BOQ54_00855 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] D BOQ54_00860 imidazole glycerol phosphate synthase subunit HisH K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10] D BOQ54_00850 imidazole glycerol phosphate synthase subunit HisF K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10] D BOQ54_00870 imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] D BOQ54_02840 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BOQ54_14080 histidinol-phosphatase K05602 hisN; histidinol-phosphatase [EC:3.1.3.15] D BOQ54_03765 histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23] D BOQ54_10755 histidine ammonia-lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3] D BOQ54_10765 urocanate hydratase K01712 hutU; urocanate hydratase [EC:4.2.1.49] D BOQ54_10750 imidazolonepropionase K01468 hutI; imidazolonepropionase [EC:3.5.2.7] D BOQ54_10745 formimidoylglutamate deiminase K05603 hutF; formimidoylglutamate deiminase [EC:3.5.3.13] D BOQ54_10760 N-formylglutamate deformylase K01458 hutG; N-formylglutamate deformylase [EC:3.5.1.68] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00350 Tyrosine metabolism [PATH:cdq00350] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_02840 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BOQ54_14720 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D BOQ54_10175 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D BOQ54_19110 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D BOQ54_10205 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D BOQ54_10210 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D BOQ54_07110 2-keto-4-pentenoate hydratase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D BOQ54_19045 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BOQ54_08710 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D BOQ54_04395 hydroxyacid aldolase K02510 hpaI; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52] D BOQ54_16925 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_17080 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_03405 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_13395 fumarylacetoacetate hydrolase K16165 nagK; fumarylpyruvate hydrolase [EC:3.7.1.20] C 00360 Phenylalanine metabolism [PATH:cdq00360] D BOQ54_07985 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D BOQ54_14550 phenylacetic acid degradation protein PaaD K02614 paaI; acyl-CoA thioesterase [EC:3.1.2.-] D BOQ54_06735 enoyl-CoA hydratase K15866 paaG; 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_04295 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_02840 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BOQ54_14720 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D BOQ54_12790 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] D BOQ54_15585 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D BOQ54_06215 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_06310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_10225 FAD-dependent oxidoreductase K05712 mhpA; 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] D BOQ54_11025 hypothetical protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D BOQ54_04125 hypothetical protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00380 Tryptophan metabolism [PATH:cdq00380] D BOQ54_01940 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_01215 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_14255 nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D BOQ54_14250 nitrile hydratase subunit beta K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D BOQ54_06215 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_06310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_07880 catalase K03781 katE; catalase [EC:1.11.1.6] C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cdq00400] D BOQ54_07065 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D BOQ54_16860 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D BOQ54_08865 type II 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10] D BOQ54_16865 3-keto-5-aminohexanoate cleavage protein K26400 quiC1; 3-dehydroshikimate dehydratase [EC:4.2.1.118] D BOQ54_00795 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] D BOQ54_02680 shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71] D BOQ54_16580 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] D BOQ54_06185 chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5] D BOQ54_09315 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D BOQ54_09310 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D BOQ54_09305 anthranilate phosphoribosyltransferase K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] D BOQ54_00990 N-(5'-phosphoribosyl)anthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24] D BOQ54_09300 indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48] D BOQ54_01000 tryptophan synthase subunit alpha K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20] D BOQ54_00995 tryptophan synthase subunit beta K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20] D BOQ54_02835 cyclohexadienyl dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D BOQ54_16120 prephenate dehydratase K04518 pheA2; prephenate dehydratase [EC:4.2.1.51] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_02840 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BOQ54_07985 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] B B 09106 Metabolism of other amino acids C 00410 beta-Alanine metabolism [PATH:cdq00410] D BOQ54_17640 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10720 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D BOQ54_17600 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D BOQ54_17700 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D BOQ54_06270 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D BOQ54_05430 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_10925 MCD, Malonyl-CoA decarboxylase MCD K01578 MLYCD; malonyl-CoA decarboxylase [EC:4.1.1.9] D BOQ54_07830 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] D BOQ54_01175 methylmalonate-semialdehyde dehydrogenase (acylating) K00140 mmsA; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] C 00430 Taurine and hypotaurine metabolism [PATH:cdq00430] D BOQ54_02245 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D BOQ54_05075 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D BOQ54_02160 NAD-glutamate dehydrogenase K15371 GDH2; glutamate dehydrogenase [EC:1.4.1.2] D BOQ54_08720 enoyl-CoA hydratase K00625 pta; phosphate acetyltransferase [EC:2.3.1.8] D BOQ54_08725 acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1] C 00440 Phosphonate and phosphinate metabolism [PATH:cdq00440] D BOQ54_10870 carbon-phosphorus lyase complex subunit PhnI K06164 phnI; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI [EC:2.7.8.37] D BOQ54_10880 phosphonate C-P lyase system protein PhnG K06166 phnG; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG [EC:2.7.8.37] D BOQ54_10875 phosphonate C-P lyase system protein PhnH K06165 phnH; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH [EC:2.7.8.37] D BOQ54_10855 phosphonate C-P lyase system protein PhnL K05780 phnL; alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [EC:2.7.8.37] D BOQ54_10850 phosphonate metabolism protein PhnM K06162 phnM; alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase [EC:3.6.1.63] D BOQ54_10865 carbon-phosphorus lyase K06163 phnJ; alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [EC:4.7.1.1] D BOQ54_10070 phosphoribosyl 1,2-cyclic phosphodiesterase K06167 phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55] C 00450 Selenocompound metabolism [PATH:cdq00450] D BOQ54_02785 cystathionine gamma-synthase K01739 metB; cystathionine gamma-synthase [EC:2.5.1.48] D BOQ54_11085 cystathionine beta-lyase K01760 metC; cysteine-S-conjugate beta-lyase [EC:4.4.1.13] D BOQ54_12745 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D BOQ54_12095 methionine gamma-lyase K01761 E4.4.1.11; methionine-gamma-lyase [EC:4.4.1.11] D BOQ54_09945 cysteine desulfurase K11717 sufS; cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] D BOQ54_01280 ferredoxin--NADP(+) reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D BOQ54_13020 thioredoxin-disulfide reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9] D BOQ54_18705 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D BOQ54_15720 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D BOQ54_18710 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BOQ54_15725 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BOQ54_10060 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] C 00460 Cyanoamino acid metabolism [PATH:cdq00460] D BOQ54_02245 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D BOQ54_05075 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D BOQ54_15580 beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D BOQ54_08095 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] C 00470 D-Amino acid metabolism [PATH:cdq00470] D BOQ54_07950 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BOQ54_15585 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D BOQ54_19065 biotin carboxylase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BOQ54_12650 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BOQ54_04375 phosphoribosylformylglycinamidine synthase I K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2] D BOQ54_11990 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D BOQ54_12675 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BOQ54_12180 dipeptide epimerase K19802 ycjG; L-Ala-D/L-Glu epimerase / N-acetyl-D-glutamate racemase [EC:5.1.1.20 5.1.1.25] D BOQ54_03910 diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7] D BOQ54_04335 diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20] D BOQ54_12070 hydroxyproline-2-epimerase K12658 lhpA; 4-hydroxyproline epimerase [EC:5.1.1.8] D BOQ54_12075 dihydrodipicolinate synthase family protein K21062 lhpC; 1-pyrroline-4-hydroxy-2-carboxylate deaminase [EC:3.5.4.22] D BOQ54_12790 D-amino acid dehydrogenase small subunit K00285 dadA; D-amino-acid dehydrogenase [EC:1.4.5.1] C 00480 Glutathione metabolism [PATH:cdq00480] D BOQ54_02245 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D BOQ54_05075 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D BOQ54_02825 gamma-glutamylcyclotransferase K07232 CHAC; glutathione-specific gamma-glutamylcyclotransferase [EC:4.3.2.7] D BOQ54_13155 5-oxoprolinase K01469 OPLAH; 5-oxoprolinase (ATP-hydrolysing) [EC:3.5.2.9] D BOQ54_05580 carboxylate-amine ligase K06048 gshA; glutamate---cysteine ligase / carboxylate-amine ligase [EC:6.3.2.2 6.3.-.-] D BOQ54_05585 glutamate--cysteine ligase K01919 gshA; glutamate--cysteine ligase [EC:6.3.2.2] D BOQ54_16750 glutathione synthase K01920 gshB; glutathione synthase [EC:6.3.2.3] D BOQ54_07640 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D BOQ54_16335 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D BOQ54_06690 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D BOQ54_13195 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_03860 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_12030 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_16630 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_12465 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_01975 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_18115 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_10005 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_07045 glutathione-disulfide reductase K00383 GSR; glutathione reductase (NADPH) [EC:1.8.1.7] D BOQ54_12000 isocitrate dehydrogenase K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42] D BOQ54_09835 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BOQ54_05810 peroxiredoxin K24138 prx3; glutaredoxin/glutathione-dependent peroxiredoxin [EC:1.11.1.25 1.11.1.27] D BOQ54_14585 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] B B 09107 Glycan biosynthesis and metabolism C 00510 N-Glycan biosynthesis C 00513 Various types of N-glycan biosynthesis C 00512 Mucin type O-glycan biosynthesis C 00515 Mannose type O-glycan biosynthesis C 00514 Other types of O-glycan biosynthesis C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin C 00533 Glycosaminoglycan biosynthesis - keratan sulfate C 00531 Glycosaminoglycan degradation C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series C 00604 Glycosphingolipid biosynthesis - ganglio series C 00511 Other glycan degradation C 00540 Lipopolysaccharide biosynthesis [PATH:cdq00540] D BOQ54_09255 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D BOQ54_12630 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D BOQ54_09245 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D BOQ54_09260 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D BOQ54_09265 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D BOQ54_05535 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D BOQ54_14140 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D BOQ54_09345 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D BOQ54_16115 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D BOQ54_05540 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D BOQ54_02255 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D BOQ54_04320 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] C 00542 O-Antigen repeat unit biosynthesis C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cdq00541] D BOQ54_14130 UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] D BOQ54_18285 nucleoside-diphosphate sugar epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_14125 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_18455 UDP-glucose 4-epimerase GalE K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2] D BOQ54_08550 UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22] D BOQ54_14815 capsular biosynthesis protein CpsI K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6] D BOQ54_15575 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BOQ54_15560 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BOQ54_15565 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BOQ54_15570 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] D BOQ54_18740 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase K16011 algA; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] D BOQ54_18750 GDP-mannose 4,6-dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47] D BOQ54_18755 GDP-fucose synthetase K02377 TSTA3; GDP-L-fucose synthase [EC:1.1.1.271] D BOQ54_09775 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] D BOQ54_14810 UDP-N-acetyl-D-galactosamine dehydrogenase K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-] C 00550 Peptidoglycan biosynthesis [PATH:cdq00550] D BOQ54_03750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BOQ54_12655 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BOQ54_12660 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D BOQ54_12675 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BOQ54_12690 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BOQ54_19065 biotin carboxylase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BOQ54_12650 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BOQ54_12685 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D BOQ54_09220 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D BOQ54_16625 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BOQ54_03970 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D BOQ54_12680 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BOQ54_12665 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D BOQ54_01445 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D BOQ54_09890 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_06505 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_01055 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_10830 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D BOQ54_12695 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BOQ54_10045 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] C 00552 Teichoic acid biosynthesis [PATH:cdq00552] D BOQ54_16625 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BOQ54_03970 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D BOQ54_18200 hypothetical protein K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D BOQ54_12345 hypothetical protein K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] C 00571 Lipoarabinomannan (LAM) biosynthesis C 00572 Arabinogalactan biosynthesis - Mycobacterium C 00543 Exopolysaccharide biosynthesis [PATH:cdq00543] D BOQ54_12050 acyltransferase K19294 algI; alginate O-acetyltransferase complex protein AlgI D BOQ54_11710 serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] D BOQ54_07610 hypothetical protein K16568 exoZ; exopolysaccharide production protein ExoZ B B 09108 Metabolism of cofactors and vitamins C 00730 Thiamine metabolism [PATH:cdq00730] D BOQ54_15995 phosphomethylpyrimidine synthase ThiC K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17] D BOQ54_12220 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] D BOQ54_09925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BOQ54_09350 glycine oxidase ThiO K03153 thiO; glycine oxidase [EC:1.4.3.19] D BOQ54_06080 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D BOQ54_09360 thiG; thiazole synthase K03149 thiG; thiazole synthase [EC:2.8.1.10] D BOQ54_12210 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D BOQ54_12215 thiamine-phosphate diphosphorylase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D BOQ54_09365 hypothetical protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D BOQ54_13855 thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] D BOQ54_08125 thiamine-phosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16] D BOQ54_11335 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] C 00740 Riboflavin metabolism [PATH:cdq00740] D BOQ54_13400 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D BOQ54_06190 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D BOQ54_13405 deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D BOQ54_08105 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D BOQ54_08115 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] D BOQ54_08110 riboflavin synthase subunit alpha K00793 ribE; riboflavin synthase [EC:2.5.1.9] D BOQ54_05410 riboflavin biosynthesis protein RibF K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] D BOQ54_02155 5,6-dimethylbenzimidazole synthase K04719 bluB; 5,6-dimethylbenzimidazole synthase [EC:1.13.11.79] D BOQ54_12210 hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50] D BOQ54_18000 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] C 00750 Vitamin B6 metabolism [PATH:cdq00750] D BOQ54_06160 pyridoxamine 5'-phosphate oxidase K00275 pdxH; pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5] D BOQ54_12415 pyridoxal kinase K00868 pdxK; pyridoxine kinase [EC:2.7.1.35] D BOQ54_13585 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] D BOQ54_03895 4-hydroxythreonine-4-phosphate dehydrogenase K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D BOQ54_07620 4-hydroxythreonine-4-phosphate dehydrogenase PdxA K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262] D BOQ54_07990 pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2] D BOQ54_05780 threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1] C 00760 Nicotinate and nicotinamide metabolism [PATH:cdq00760] D BOQ54_05970 L-aspartate oxidase K00278 nadB; L-aspartate oxidase [EC:1.4.3.16] D BOQ54_05975 quinolinate synthase K03517 nadA; quinolinate synthase [EC:2.5.1.72] D BOQ54_05965 nicotinate-nucleotide diphosphorylase (carboxylating) K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] D BOQ54_00370 nicotinate phosphoribosyltransferase K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21] D BOQ54_16465 purine-nucleoside phosphorylase K03783 punA; purine-nucleoside phosphorylase [EC:2.4.2.1] D BOQ54_14165 bifunctional metallophosphatase/5'-nucleotidase K11751 ushA; 5'-nucleotidase / UDP-sugar diphosphatase [EC:3.1.3.5 3.6.1.45] D BOQ54_03580 hypothetical protein K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BOQ54_10360 5'/3'-nucleotidase SurE K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6] D BOQ54_04005 nicotinic acid mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] D BOQ54_09465 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D BOQ54_16130 NADH pyrophosphatase K03426 NUDT12_13; NAD+ diphosphatase [EC:3.6.1.22] D BOQ54_07080 NAD+ synthase K01916 nadE; NAD+ synthase [EC:6.3.1.5] D BOQ54_09420 damage-inducible protein CinA K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42] D BOQ54_00360 nicotinamidase K08281 pncA; nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] D BOQ54_09865 NAD-dependent deacetylase K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313] D BOQ54_11590 NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23] D BOQ54_13985 NAD synthetase K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D BOQ54_13990 NAD(P) transhydrogenase subunit alpha K00324 pntA; proton-translocating NAD(P)+ transhydrogenase subunit alpha [EC:7.1.1.1] D BOQ54_13980 NAD synthetase K00325 pntB; proton-translocating NAD(P)+ transhydrogenase subunit beta [EC:7.1.1.1] D BOQ54_00410 6-hydroxynicotinate reductase K20449 hnr; 6-hydroxynicotinate reductase [EC:1.3.7.1] D BOQ54_00455 Enamidase K15358 ena; enamidase [EC:3.5.2.18] D BOQ54_16925 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_17080 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] D BOQ54_03405 gabD; succinate-semialdehyde dehydrogenase (NADP(+)) K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] C 00770 Pantothenate and CoA biosynthesis [PATH:cdq00770] D BOQ54_12470 acetolactate synthase 3 large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_17635 acetolactate synthase large subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_19010 acetolactate synthase K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_01205 thiamine pyrophosphate-binding protein K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] D BOQ54_12460 acetolactate synthase small subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6] D BOQ54_12445 ketol-acid reductoisomerase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86] D BOQ54_08760 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D BOQ54_03495 dihydroxy-acid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] D BOQ54_07890 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] D BOQ54_10720 pantoate--beta-alanine ligase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1] D BOQ54_00840 type I pantothenate kinase K00867 coaA; type I pantothenate kinase [EC:2.7.1.33] D BOQ54_00510 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5] D BOQ54_09465 nucleoside triphosphate pyrophosphohydrolase K04765 mazG; nucleoside triphosphate diphosphatase [EC:3.6.1.9] D BOQ54_08820 pantetheine-phosphate adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] D BOQ54_00800 dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24] D BOQ54_07995 holo-ACP synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7] D BOQ54_15525 hypothetical protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-] D BOQ54_08650 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_13700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_17600 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D BOQ54_17700 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D BOQ54_06270 Zn-dependent hydrolase K06016 pydC; beta-ureidopropionase / N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.6 3.5.1.87] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00780 Biotin metabolism [PATH:cdq00780] D BOQ54_00200 beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D BOQ54_07590 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_02270 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_02275 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_03570 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_07580 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_12365 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_13355 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_15475 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_15480 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_00380 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_02265 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_07845 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_09250 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BOQ54_02280 beta-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BOQ54_06175 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BOQ54_00205 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BOQ54_07805 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D BOQ54_07815 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D BOQ54_07810 dethiobiotin synthase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3] D BOQ54_07800 biotin synthase BioB K01012 bioB; biotin synthase [EC:2.8.1.6] D BOQ54_09125 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] C 00785 Lipoic acid metabolism [PATH:cdq00785] D BOQ54_08410 lipoate-protein ligase B K03801 lipB; lipoyl(octanoyl) transferase [EC:2.3.1.181] D BOQ54_09410 lipoyl synthase K03644 lipA; lipoyl synthase [EC:2.8.1.8] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_04235 transketolase K00163 aceE; pyruvate dehydrogenase E1 component [EC:1.2.4.1] D BOQ54_09385 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K00161 PDHA; pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] D BOQ54_09390 pyruvate dehydrogenase complex E1 component subunit beta K00162 PDHB; pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] D BOQ54_03605 hypothetical protein K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_17170 acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_09395 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase K00627 DLAT; pyruvate dehydrogenase E2 component (dihydrolipoyllysine-residue acetyltransferase) [EC:2.3.1.12] D BOQ54_01945 2-oxoglutarate dehydrogenase E1 component K00164 OGDH; 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2] D BOQ54_01940 dihydrolipoamide succinyltransferase K00658 DLST; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] D BOQ54_12920 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha K00166 BCKDHA; 2-oxoisovalerate dehydrogenase E1 component subunit alpha [EC:1.2.4.4] D BOQ54_12925 alpha-ketoacid dehydrogenase subunit beta K00167 BCKDHB; 2-oxoisovalerate dehydrogenase E1 component subunit beta [EC:1.2.4.4] D BOQ54_15435 MFS transporter K11381 bkdA; 2-oxoisovalerate dehydrogenase E1 component [EC:1.2.4.4] D BOQ54_12930 branched-chain alpha-keto acid dehydrogenase subunit E2 K09699 DBT; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168] D BOQ54_05715 glycine dehydrogenase (aminomethyl-transferring) K00282 gcvPA; glycine cleavage system P protein (glycine dehydrogenase) subunit 1 [EC:1.4.4.2] D BOQ54_05710 glycine dehydrogenase (aminomethyl-transferring) K00283 gcvPB; glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:1.4.4.2] D BOQ54_05725 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D BOQ54_05720 glycine cleavage system protein H K02437 gcvH; glycine cleavage system H protein C 00790 Folate biosynthesis [PATH:cdq00790] D BOQ54_11645 GTP cyclohydrolase I FolE K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16] D BOQ54_08620 dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81] D BOQ54_08615 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] D BOQ54_08625 dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15] D BOQ54_12505 diacylglycerol kinase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D BOQ54_01010 bifunctional folylpolyglutamate synthase/dihydrofolate synthase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] D BOQ54_13400 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D BOQ54_06190 3,4-dihydroxy-2-butanone-4-phosphate synthase K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] D BOQ54_04170 aminodeoxychorismate/anthranilate synthase component II K01664 pabA; para-aminobenzoate synthetase component II [EC:2.6.1.85] D BOQ54_04165 aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85] D BOQ54_02040 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D BOQ54_07985 phenylalanine 4-monooxygenase K00500 phhA; phenylalanine-4-hydroxylase [EC:1.14.16.1] D BOQ54_13730 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D BOQ54_09370 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D BOQ54_06965 cyclic pyranopterin phosphate synthase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D BOQ54_09295 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D BOQ54_13705 molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D BOQ54_05845 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D BOQ54_09290 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D BOQ54_07350 molybdopterin molybdenumtransferase MoeA K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1] D BOQ54_11835 hypothetical protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D BOQ54_11840 molybdopterin-binding protein K07141 mocA; molybdenum cofactor cytidylyltransferase [EC:2.7.7.76] D BOQ54_07270 molybdenum cofactor guanylyltransferase MobA K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77] C 00670 One carbon pool by folate [PATH:cdq00670] D BOQ54_12505 diacylglycerol kinase K00287 DHFR; dihydrofolate reductase [EC:1.5.1.3] D BOQ54_02015 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] D BOQ54_08095 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1] D BOQ54_10515 phosphoribosylglycinamide formyltransferase K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] D BOQ54_02105 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BOQ54_16040 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D BOQ54_05725 gcvT; glycine cleavage system protein T K00605 gcvT; glycine cleavage system T protein (aminomethyltransferase) [EC:2.1.2.10] D BOQ54_12745 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] D BOQ54_12515 thymidylate synthase K00560 thyA; thymidylate synthase [EC:2.1.1.45] D BOQ54_10970 formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10] D BOQ54_12750 methylenetetrahydrofolate reductase [NAD(P)H] K00297 metF; methylenetetrahydrofolate reductase (NADH) [EC:1.5.1.54] D BOQ54_13810 5-formyltetrahydrofolate cyclo-ligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2] C 00830 Retinol metabolism C 00860 Porphyrin metabolism [PATH:cdq00860] D BOQ54_03745 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D BOQ54_09275 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_07085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_08070 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D BOQ54_02075 hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61] D BOQ54_02080 hypothetical protein K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75] D BOQ54_00780 uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37] D BOQ54_13270 coproporphyrinogen III oxidase K00228 CPOX; coproporphyrinogen III oxidase [EC:1.3.3.3] D BOQ54_06345 oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3] D BOQ54_15500 hypothetical protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D BOQ54_00775 TIGR00701 family protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-] D BOQ54_14160 ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] D BOQ54_15750 uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D BOQ54_07240 uroporphyrinogen-III C-methyltransferase K02302 cysG; uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4] D BOQ54_02640 uroporphyrinogen-III C-methyltransferase K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107] D BOQ54_05750 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D BOQ54_08270 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D BOQ54_02610 precorrin-2 C(20)-methyltransferase K03394 cobI-cbiL; precorrin-2/cobalt-factor-2 C20-methyltransferase [EC:2.1.1.130 2.1.1.151] D BOQ54_02600 hypothetical protein K02229 cobG; precorrin-3B synthase [EC:1.14.13.83] D BOQ54_02615 precorrin-3B C(17)-methyltransferase K05934 cobJ; precorrin-3B C17-methyltransferase / cobalt-factor III methyltransferase [EC:2.1.1.131 2.1.1.272] D BOQ54_02635 precorrin-4 C(11)-methyltransferase K05936 cobM; precorrin-4/cobalt-precorrin-4 C11-methyltransferase [EC:2.1.1.133 2.1.1.271] D BOQ54_02630 hypothetical protein K02189 cbiG; cobalt-precorrin 5A hydrolase [EC:3.7.1.12] D BOQ54_19015 precorrin-6A synthase (deacetylating) K02228 cobF; precorrin-6A synthase [EC:2.1.1.152] D BOQ54_02620 cobalt-precorrin-6A reductase K05895 cobK-cbiJ; precorrin-6A/cobalt-precorrin-6A reductase [EC:1.3.1.54 1.3.1.106] D BOQ54_02625 cobalamin biosynthesis bifunctional protein CbiET K00595 cobL-cbiET; precorrin-6B C5,15-methyltransferase / cobalt-precorrin-6B C5,C15-methyltransferase [EC:2.1.1.132 2.1.1.289 2.1.1.196] D BOQ54_02605 cobH; precorrin-8X methylmutase K06042 cobH-cbiC; precorrin-8X/cobalt-precorrin-8 methylmutase [EC:5.4.99.61 5.4.99.60] D BOQ54_02595 cobaltochelatase subunit CobN K02230 cobN; cobaltochelatase CobN [EC:6.6.1.2] D BOQ54_02495 cobaltochelatase subunit CobS K09882 cobS; cobaltochelatase CobS [EC:6.6.1.2] D BOQ54_02500 cobaltochelatase subunit CobT K09883 cobT; cobaltochelatase CobT [EC:6.6.1.2] D BOQ54_04315 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D BOQ54_00275 cob(I)yrinic acid a,c-diamide adenosyltransferase K19221 cobA; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D BOQ54_00280 cobyric acid synthase CobQ K02232 cobQ; adenosylcobyric acid synthase [EC:6.3.5.10] D BOQ54_11760 cobalamin biosynthesis protein CobD K02227 cbiB; adenosylcobinamide-phosphate synthase [EC:6.3.1.10] D BOQ54_11755 threonine-phosphate decarboxylase K02225 cobC1; cobalamin biosynthesis protein CobC D BOQ54_00270 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase K02231 cobP; adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] D BOQ54_06875 hypothetical protein K02233 E2.7.8.26; adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] D BOQ54_06880 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase K00768 E2.4.2.21; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] D BOQ54_01040 pyridoxamine 5'-phosphate oxidase K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58] D BOQ54_18380 glycosyl hydrolase family 2 K01195 uidA; beta-glucuronidase [EC:3.2.1.31] D BOQ54_03805 bacterioferritin K03594 bfr; bacterioferritin [EC:1.16.3.1] C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cdq00130] D BOQ54_05565 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D BOQ54_17995 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98] D BOQ54_18000 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D BOQ54_02740 bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase K00568 ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64] D BOQ54_01610 2-octaprenyl-6-methoxyphenyl hydroxylase K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D BOQ54_08940 ubiquinone biosynthesis protein UbiH K03185 ubiH; 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-] D BOQ54_00520 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201] D BOQ54_14630 NAD(P)H dehydrogenase K00355 NQO1; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D BOQ54_17475 NAD(P)H:quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D BOQ54_06005 NAD(P)H:quinone oxidoreductase, type IV K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] D BOQ54_14720 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] B B 09109 Metabolism of terpenoids and polyketides C 00900 Terpenoid backbone biosynthesis [PATH:cdq00900] D BOQ54_06080 1-deoxy-D-xylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] D BOQ54_09230 1-deoxy-D-xylulose-5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] D BOQ54_09425 ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12] D BOQ54_05880 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] D BOQ54_01460 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3] D BOQ54_05630 4-hydroxy-3-methylbut-2-enyl diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_18000 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D BOQ54_01450 geranylgeranyl pyrophosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D BOQ54_05885 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D BOQ54_09220 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] C 00902 Monoterpenoid biosynthesis C 00909 Sesquiterpenoid and triterpenoid biosynthesis C 00904 Diterpenoid biosynthesis C 00906 Carotenoid biosynthesis [PATH:cdq00906] D BOQ54_10320 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] C 00905 Brassinosteroid biosynthesis C 00981 Insect hormone biosynthesis C 00908 Zeatin biosynthesis C 00903 Limonene degradation D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] C 00907 Pinene, camphor and geraniol degradation [PATH:cdq00907] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_06025 short chain dehydrogenase K13775 atuG; citronellol/citronellal dehydrogenase C 01052 Type I polyketide structures C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides C 01051 Biosynthesis of ansamycins D BOQ54_13830 transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1] C 01059 Biosynthesis of enediyne antibiotics D BOQ54_17245 nucleotidyltransferase K21210 ncsC; NDP-mannose synthase C 01056 Biosynthesis of type II polyketide backbone C 01057 Biosynthesis of type II polyketide products C 00253 Tetracycline biosynthesis C 00523 Polyketide sugar unit biosynthesis [PATH:cdq00523] D BOQ54_15575 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BOQ54_15560 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BOQ54_15565 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BOQ54_15570 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 01054 Nonribosomal peptide structures C 01053 Biosynthesis of siderophore group nonribosomal peptides C 01055 Biosynthesis of vancomycin group antibiotics D BOQ54_15560 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] B B 09110 Biosynthesis of other secondary metabolites C 00940 Phenylpropanoid biosynthesis C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis C 00941 Flavonoid biosynthesis C 00944 Flavone and flavonol biosynthesis C 00942 Anthocyanin biosynthesis C 00943 Isoflavonoid biosynthesis C 00946 Degradation of flavonoids C 00901 Indole alkaloid biosynthesis C 00403 Indole diterpene alkaloid biosynthesis C 00950 Isoquinoline alkaloid biosynthesis C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis C 00996 Biosynthesis of various alkaloids C 00232 Caffeine metabolism C 00965 Betalain biosynthesis C 00966 Glucosinolate biosynthesis C 00402 Benzoxazinoid biosynthesis C 00311 Penicillin and cephalosporin biosynthesis C 00332 Carbapenem biosynthesis [PATH:cdq00332] D BOQ54_04015 glutamate 5-kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11] D BOQ54_04010 glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] C 00261 Monobactam biosynthesis [PATH:cdq00261] D BOQ54_18705 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D BOQ54_15720 adenylyl-sulfate kinase K00955 cysNC; bifunctional enzyme CysN/CysC [EC:2.7.7.4 2.7.1.25] D BOQ54_18710 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BOQ54_15725 sulfate adenylyltransferase small subunit K00957 cysD; sulfate adenylyltransferase subunit 2 [EC:2.7.7.4] D BOQ54_02735 aspartate kinase K00928 lysC; aspartate kinase [EC:2.7.2.4] D BOQ54_02880 aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11] D BOQ54_03540 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_01725 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_17750 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_18255 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_07500 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_00695 dihydrodipicolinate synthase family protein K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7] D BOQ54_16715 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] D BOQ54_13150 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8] C 00331 Clavulanic acid biosynthesis C 00521 Streptomycin biosynthesis [PATH:cdq00521] D BOQ54_14370 hypothetical protein K00845 glk; glucokinase [EC:2.7.1.2] D BOQ54_16165 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] D BOQ54_03710 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BOQ54_13865 inositol monophosphatase K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BOQ54_05555 3'(2'),5'-bisphosphate nucleotidase CysQ K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] D BOQ54_06370 inositol 2-dehydrogenase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D BOQ54_03500 oxidoreductase K00010 iolG; myo-inositol 2-dehydrogenase / D-chiro-inositol 1-dehydrogenase [EC:1.1.1.18 1.1.1.369] D BOQ54_15575 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BOQ54_15560 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] D BOQ54_15565 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] D BOQ54_15570 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] C 00524 Neomycin, kanamycin and gentamicin biosynthesis D BOQ54_14370 hypothetical protein K00845 glk; glucokinase [EC:2.7.1.2] C 00525 Acarbose and validamycin biosynthesis [PATH:cdq00525] D BOQ54_15575 glucose-1-phosphate thymidylyltransferase K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] D BOQ54_15560 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] C 00401 Novobiocin biosynthesis [PATH:cdq00401] D BOQ54_02835 cyclohexadienyl dehydrogenase K00220 tyrC; cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_02840 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] C 00404 Staurosporine biosynthesis C 00405 Phenazine biosynthesis [PATH:cdq00405] D BOQ54_12405 phenazine biosynthesis protein PhzF K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D BOQ54_09315 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D BOQ54_09310 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] C 00333 Prodigiosin biosynthesis D BOQ54_07575 [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BOQ54_03570 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_07580 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_12365 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_13355 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_15475 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_15480 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_00380 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_02265 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_07845 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_06175 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BOQ54_00205 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] C 00254 Aflatoxin biosynthesis C 00998 Biosynthesis of various antibiotics D BOQ54_07585 acyl carrier protein K02078 acpP; acyl carrier protein C 00999 Biosynthesis of various plant secondary metabolites [PATH:cdq00999] D BOQ54_00960 methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6] D BOQ54_00795 shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25] C 00997 Biosynthesis of various other secondary metabolites D BOQ54_19195 acetyltransferase K03896 iucB; acetyl CoA:N6-hydroxylysine acetyl transferase [EC:2.3.1.102] B B 09111 Xenobiotics biodegradation and metabolism C 00362 Benzoate degradation [PATH:cdq00362] D BOQ54_02980 mandelate racemase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D BOQ54_11895 3-oxoadipate enol-lactonase K01055 pcaD; 3-oxoadipate enol-lactonase [EC:3.1.1.24] D BOQ54_18980 3-oxoadipyl-CoA thiolase K07823 pcaF; 3-oxoadipyl-CoA thiolase [EC:2.3.1.174] D BOQ54_11025 hypothetical protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D BOQ54_04125 hypothetical protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D BOQ54_12760 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D BOQ54_18965 protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D BOQ54_18960 protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] D BOQ54_18985 3-carboxy-cis,cis-muconate cycloisomerase K01857 pcaB; 3-carboxy-cis,cis-muconate cycloisomerase [EC:5.5.1.2] D BOQ54_18955 4-carboxymuconolactone decarboxylase K01607 pcaC; 4-carboxymuconolactone decarboxylase [EC:4.1.1.44] D BOQ54_18940 4-hydroxybenzoate 3-monooxygenase K00481 pobA; p-hydroxybenzoate 3-monooxygenase [EC:1.14.13.2] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] D BOQ54_01215 acyl-CoA dehydrogenase K00252 GCDH; glutaryl-CoA dehydrogenase [EC:1.3.8.6] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_04295 3-hydroxybutyryl-CoA dehydrogenase K00074 paaH; 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] C 00627 Aminobenzoate degradation [PATH:cdq00627] D BOQ54_14255 nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D BOQ54_14250 nitrile hydratase subunit beta K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D BOQ54_06215 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_06310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_11240 acylphosphatase K01512 acyP; acylphosphatase [EC:3.6.1.7] D BOQ54_18000 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129] D BOQ54_10960 ferredoxin K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] C 00364 Fluorobenzoate degradation [PATH:cdq00364] D BOQ54_10170 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D BOQ54_02980 mandelate racemase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D BOQ54_14255 nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D BOQ54_14250 nitrile hydratase subunit beta K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] C 00625 Chloroalkane and chloroalkene degradation [PATH:cdq00625] D BOQ54_08710 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D BOQ54_19045 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] D BOQ54_17645 aldehyde dehydrogenase family protein K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_10980 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_17310 aldehyde dehydrogenase K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] D BOQ54_05510 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] D BOQ54_16935 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D BOQ54_08645 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D BOQ54_04140 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D BOQ54_16170 2-haloalkanoic acid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] C 00361 Chlorocyclohexane and chlorobenzene degradation [PATH:cdq00361] D BOQ54_10170 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] D BOQ54_02980 mandelate racemase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D BOQ54_16935 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D BOQ54_08645 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D BOQ54_04140 haloacid dehalogenase, type II K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D BOQ54_16170 2-haloalkanoic acid dehalogenase K01560 E3.8.1.2; 2-haloacid dehalogenase [EC:3.8.1.2] D BOQ54_05510 alpha/beta hydrolase K01561 dehH; haloacetate dehalogenase [EC:3.8.1.3] C 00623 Toluene degradation [PATH:cdq00623] D BOQ54_02980 mandelate racemase K01856 catB; muconate cycloisomerase [EC:5.5.1.1] D BOQ54_10170 dienelactone hydrolase K01061 E3.1.1.45; carboxymethylenebutenolidase [EC:3.1.1.45] C 00622 Xylene degradation [PATH:cdq00622] D BOQ54_12760 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D BOQ54_11025 hypothetical protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D BOQ54_04125 hypothetical protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00633 Nitrotoluene degradation D BOQ54_10960 ferredoxin K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] C 00642 Ethylbenzene degradation [PATH:cdq00642] D BOQ54_10960 ferredoxin K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] C 00643 Styrene degradation [PATH:cdq00643] D BOQ54_10175 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D BOQ54_19110 homogentisate 1,2-dioxygenase K00451 HGD; homogentisate 1,2-dioxygenase [EC:1.13.11.5] D BOQ54_10205 maleylacetoacetate isomerase K01800 maiA; maleylacetoacetate isomerase [EC:5.2.1.2] D BOQ54_10210 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D BOQ54_07110 2-keto-4-pentenoate hydratase K16171 faaH; fumarylacetoacetate (FAA) hydrolase [EC:3.7.1.2] D BOQ54_14255 nitrile hydratase subunit alpha K01721 nthA; nitrile hydratase subunit alpha [EC:4.2.1.84] D BOQ54_14250 nitrile hydratase subunit beta K20807 nthB; nitrile hydratase subunit beta [EC:4.2.1.84] D BOQ54_06215 hypothetical protein K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_06310 amidase K01426 E3.5.1.4; amidase [EC:3.5.1.4] D BOQ54_18970 3-oxoadipate--succinyl-CoA transferase subunit A K01039 gctA; glutaconate CoA-transferase, subunit A [EC:2.8.3.12] D BOQ54_18975 3-oxoadipate--succinyl-CoA transferase subunit B K01040 gctB; glutaconate CoA-transferase, subunit B [EC:2.8.3.12] C 00791 Atrazine degradation D BOQ54_15185 urease subunit alpha K01428 ureC; urease subunit alpha [EC:3.5.1.5] D BOQ54_15170 Urease subunit alpha K14048 ureAB; urease subunit gamma/beta [EC:3.5.1.5] C 00930 Caprolactam degradation [PATH:cdq00930] D BOQ54_10020 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D BOQ54_16800 enoyl-CoA hydratase K01692 paaF; enoyl-CoA hydratase [EC:4.2.1.17] D BOQ54_15840 3-hydroxyacyl-CoA dehydrogenase K01782 fadJ; 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] C 00363 Bisphenol degradation D BOQ54_12370 cupin K05913 dad; 2,4'-dihydroxyacetophenone dioxygenase [EC:1.13.11.41] C 00621 Dioxin degradation [PATH:cdq00621] D BOQ54_12760 4-oxalocrotonate tautomerase K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6] D BOQ54_11025 hypothetical protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] D BOQ54_04125 hypothetical protein K02554 mhpD; 2-keto-4-pentenoate hydratase [EC:4.2.1.80] C 00626 Naphthalene degradation [PATH:cdq00626] D BOQ54_10960 ferredoxin K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] D BOQ54_08710 zinc-dependent alcohol dehydrogenase K13953 adhP; alcohol dehydrogenase, propanol-preferring [EC:1.1.1.1] D BOQ54_19045 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase K00121 frmA; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] C 00624 Polycyclic aromatic hydrocarbon degradation [PATH:cdq00624] D BOQ54_10960 ferredoxin K14581 nahAa; naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7] D BOQ54_18965 protocatechuate 3,4-dioxygenase subunit alpha K00448 pcaG; protocatechuate 3,4-dioxygenase, alpha subunit [EC:1.13.11.3] D BOQ54_18960 protocatechuate 3,4-dioxygenase subunit beta K00449 pcaH; protocatechuate 3,4-dioxygenase, beta subunit [EC:1.13.11.3] C 00365 Furfural degradation C 00984 Steroid degradation C 00980 Metabolism of xenobiotics by cytochrome P450 C 00982 Drug metabolism - cytochrome P450 C 00983 Drug metabolism - other enzymes B B 09112 Not included in regular maps C 09113 Global maps only # A09120 Genetic Information Processing B B 09121 Transcription C 03020 RNA polymerase [PATH:cdq03020] D BOQ54_11475 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BOQ54_11470 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BOQ54_11320 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BOQ54_07540 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] C 03022 Basal transcription factors C 03040 Spliceosome B B 09122 Translation C 03010 Ribosome [PATH:cdq03010] D BOQ54_00970 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D BOQ54_09200 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D BOQ54_11410 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D BOQ54_11985 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D BOQ54_11355 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D BOQ54_07980 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D BOQ54_11460 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D BOQ54_11370 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D BOQ54_08330 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D BOQ54_11445 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D BOQ54_11325 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D BOQ54_11465 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D BOQ54_11330 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D BOQ54_11375 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D BOQ54_15940 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D BOQ54_03930 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D BOQ54_11395 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D BOQ54_07975 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D BOQ54_11420 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D BOQ54_16810 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D BOQ54_13965 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D BOQ54_11490 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D BOQ54_11425 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D BOQ54_11440 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D BOQ54_11435 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D BOQ54_11380 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D BOQ54_11365 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D BOQ54_11480 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D BOQ54_07965 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D BOQ54_11485 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D BOQ54_11495 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D BOQ54_08325 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D BOQ54_11390 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D BOQ54_11345 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D BOQ54_11405 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D BOQ54_11315 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D BOQ54_11360 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D BOQ54_02935 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D BOQ54_16515 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D BOQ54_04040 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D BOQ54_11415 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D BOQ54_11430 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D BOQ54_11385 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D BOQ54_13750 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D BOQ54_04035 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D BOQ54_02515 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D BOQ54_11400 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D BOQ54_11350 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D BOQ54_13885 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D BOQ54_01440 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D BOQ54_10630 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D BOQ54_01370 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D BOQ54_16520 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D BOQ54_14055 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D BOQ54_03035 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BOQ54_04425 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BOQ54_03050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BOQ54_04440 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BOQ54_03055 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BOQ54_04445 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA C 00970 Aminoacyl-tRNA biosynthesis [PATH:cdq00970] D BOQ54_03045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BOQ54_16570 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BOQ54_02030 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BOQ54_04435 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BOQ54_01350 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BOQ54_11120 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BOQ54_05090 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BOQ54_02555 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BOQ54_08730 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BOQ54_09045 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BOQ54_08735 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D BOQ54_06425 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BOQ54_07730 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BOQ54_11175 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BOQ54_13545 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BOQ54_02450 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BOQ54_01635 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BOQ54_11530 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BOQ54_03840 tRNA-His K14226 tRNA-His; tRNA His D BOQ54_03040 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BOQ54_04430 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BOQ54_00115 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_04275 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_11750 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_09010 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_08415 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_08850 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BOQ54_12385 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BOQ54_15625 tRNA-Met K14230 tRNA-Met; tRNA Met D BOQ54_03060 tRNA-Met K14230 tRNA-Met; tRNA Met D BOQ54_04450 tRNA-Met K14230 tRNA-Met; tRNA Met D BOQ54_12940 tRNA-Met K14230 tRNA-Met; tRNA Met D BOQ54_07185 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BOQ54_08205 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BOQ54_11110 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BOQ54_06430 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BOQ54_10000 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BOQ54_14440 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BOQ54_07400 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BOQ54_04050 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BOQ54_03740 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BOQ54_11560 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BOQ54_02095 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BOQ54_11520 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D BOQ54_11535 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BOQ54_09040 tRNA-Val K14237 tRNA-Val; tRNA Val D BOQ54_14060 tRNA-Val K14237 tRNA-Val; tRNA Val D BOQ54_06985 tRNA-Val K14237 tRNA-Val; tRNA Val D BOQ54_09275 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_07085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_05085 glutamyl-tRNA amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D BOQ54_10575 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D BOQ54_10560 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D BOQ54_10580 asparaginyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D BOQ54_12010 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BOQ54_10475 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BOQ54_05920 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BOQ54_05930 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BOQ54_11625 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BOQ54_10365 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BOQ54_07130 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BOQ54_10060 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BOQ54_16040 methionyl-tRNA formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9] D BOQ54_08755 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BOQ54_00725 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BOQ54_05400 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BOQ54_00525 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D BOQ54_10410 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BOQ54_09145 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BOQ54_05495 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BOQ54_16510 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BOQ54_16505 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BOQ54_09915 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BOQ54_00895 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] C 03013 Nucleocytoplasmic transport C 03015 mRNA surveillance pathway C 03008 Ribosome biogenesis in eukaryotes B B 09123 Folding, sorting and degradation C 03060 Protein export [PATH:cdq03060] D BOQ54_11340 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D BOQ54_11515 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D BOQ54_09330 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D BOQ54_10335 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D BOQ54_10330 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D BOQ54_10340 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D BOQ54_01380 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D BOQ54_00640 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BOQ54_00810 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BOQ54_03925 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D BOQ54_16140 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D BOQ54_02330 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BOQ54_10380 Sec-independent protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA D BOQ54_10375 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D BOQ54_10370 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D BOQ54_08000 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D BOQ54_05395 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] C 04141 Protein processing in endoplasmic reticulum C 04130 SNARE interactions in vesicular transport C 04120 Ubiquitin mediated proteolysis C 04122 Sulfur relay system [PATH:cdq04122] D BOQ54_09925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BOQ54_08685 sseA; 3-mercaptopyruvate sulfurtransferase K01011 TST; thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2] D BOQ54_07275 preprotein translocase subunit TatB K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D BOQ54_15635 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D BOQ54_13705 molybdopterin synthase catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12] D BOQ54_06965 cyclic pyranopterin phosphate synthase MoaA K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22] D BOQ54_13710 molybdopterin converting factor subunit 1 K03636 moaD; sulfur-carrier protein D BOQ54_16495 adenylyltransferase K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80] D BOQ54_09295 molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17] D BOQ54_05845 molybdenum cofactor biosynthesis protein B K03638 moaB; molybdopterin adenylyltransferase [EC:2.7.7.75] D BOQ54_09355 thiamine biosynthesis protein ThiS K03154 thiS; sulfur carrier protein C 03050 Proteasome C 03018 RNA degradation [PATH:cdq03018] D BOQ54_03975 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D BOQ54_09880 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12] D BOQ54_09375 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BOQ54_15935 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D BOQ54_10805 RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D BOQ54_07560 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D BOQ54_11690 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BOQ54_00770 transcription termination factor Rho K03628 rho; transcription termination factor Rho D BOQ54_09130 MBL fold metallo-hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-] D BOQ54_16680 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BOQ54_05470 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_11820 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_09455 RNA chaperone Hfq K03666 hfq; host factor-I protein D BOQ54_10490 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D BOQ54_13280 hypothetical protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] B B 09124 Replication and repair C 03030 DNA replication [PATH:cdq03030] D BOQ54_00805 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BOQ54_09195 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BOQ54_16145 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BOQ54_10055 XRE family transcriptional regulator K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BOQ54_00735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BOQ54_07645 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BOQ54_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BOQ54_07955 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D BOQ54_12975 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D BOQ54_10305 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BOQ54_05640 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D BOQ54_05815 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D BOQ54_00355 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BOQ54_12610 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03410 Base excision repair [PATH:cdq03410] D BOQ54_16620 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D BOQ54_05660 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D BOQ54_16795 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D BOQ54_04405 Fe-S cluster assembly protein HesB K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D BOQ54_06130 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D BOQ54_07525 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D BOQ54_05865 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D BOQ54_01580 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D BOQ54_08780 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D BOQ54_00355 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BOQ54_11180 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BOQ54_12610 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03420 Nucleotide excision repair [PATH:cdq03420] D BOQ54_09805 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D BOQ54_10310 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D BOQ54_13105 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D BOQ54_13720 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D BOQ54_12570 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BOQ54_03300 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BOQ54_00355 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BOQ54_12610 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03430 Mismatch repair [PATH:cdq03430] D BOQ54_14455 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D BOQ54_16665 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D BOQ54_05370 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D BOQ54_12570 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BOQ54_03300 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BOQ54_05525 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D BOQ54_06090 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D BOQ54_11180 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BOQ54_10305 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BOQ54_09195 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BOQ54_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BOQ54_16145 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BOQ54_00735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BOQ54_10055 XRE family transcriptional regulator K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BOQ54_00805 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BOQ54_07645 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BOQ54_12610 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] C 03440 Homologous recombination [PATH:cdq03440] D BOQ54_11180 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BOQ54_10305 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BOQ54_00015 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D BOQ54_08015 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D BOQ54_16155 recombination protein RecR K06187 recR; recombination protein RecR D BOQ54_12015 recombinase RecA K03553 recA; recombination protein RecA D BOQ54_00355 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BOQ54_13785 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D BOQ54_13780 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D BOQ54_13790 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D BOQ54_09795 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D BOQ54_09195 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BOQ54_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BOQ54_16145 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BOQ54_00735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BOQ54_10055 XRE family transcriptional regulator K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BOQ54_00805 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BOQ54_07645 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BOQ54_01925 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] C 03450 Non-homologous end-joining [PATH:cdq03450] D BOQ54_10255 Ku protein K10979 ku; DNA end-binding protein Ku D BOQ54_10250 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] C 03460 Fanconi anemia pathway B B 09126 Chromosome C 03082 ATP-dependent chromatin remodeling C 03083 Polycomb repressive complex B B 09125 Information processing in viruses C 03230 Viral genome structure C 03240 Viral replication C 03250 Viral life cycle - HIV-1 C 03260 Virion - Human immunodeficiency virus C 03271 Virion - Rotavirus C 03262 Virion - Coronavirus C 03261 Virion - Influenza virus C 03263 Virion - Enterovirus C 03264 Virion - Flavivirus C 03265 Virion - Ebolavirus and Lyssavirus C 03266 Virion - Herpesvirus C 03268 Virion - Orthopoxvirus C 03267 Virion - Adenovirus C 03259 Virion - Bacteriophages T4 and T7 C 03258 Virion - Bacteriophage lambda # A09130 Environmental Information Processing B B 09131 Membrane transport C 02010 ABC transporters [PATH:cdq02010] D BOQ54_12295 sulfate transporter K05772 tupA; tungstate transport system substrate-binding protein D BOQ54_12285 ABC transporter permease K05773 tupB; tungstate transport system permease protein D BOQ54_12290 ABC transporter ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D BOQ54_07205 bicarbonate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D BOQ54_07210 nitrate ABC transporter, permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D BOQ54_07215 nitrate ABC transporter ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D BOQ54_12425 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D BOQ54_12430 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D BOQ54_12435 mannosyltransferase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D BOQ54_04270 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D BOQ54_04265 molybdenum ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D BOQ54_04260 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D BOQ54_03600 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_03695 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_07720 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_17440 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_05110 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_03595 ABC transporter permease K02011 afuB; iron(III) transport system permease protein D BOQ54_03700 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D BOQ54_07715 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D BOQ54_17435 ABC transporter permease K02011 afuB; iron(III) transport system permease protein D BOQ54_03590 spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BOQ54_03705 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BOQ54_17430 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BOQ54_10385 iron ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BOQ54_14385 spermidine/putrescine ABC transporter substrate-binding protein PotF K11073 potF; putrescine transport system substrate-binding protein D BOQ54_07700 putrescine ABC transporter permease PotI K11074 potI; putrescine transport system permease protein D BOQ54_07695 putrescine/spermidine ABC transporter permease K11075 potH; putrescine transport system permease protein D BOQ54_07690 ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D BOQ54_17505 ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D BOQ54_17510 ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D BOQ54_17515 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D BOQ54_07370 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D BOQ54_07355 ABC transporter K05846 opuBD; osmoprotectant transport system permease protein D BOQ54_07365 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D BOQ54_07360 ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D BOQ54_16280 sugar ABC transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_17770 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_18280 glycerol-3-phosphate ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_09595 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_14665 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_15290 ABC transporter ATP-binding protein K10191 lacK; lactose/L-arabinose transport system ATP-binding protein D BOQ54_12165 mammalian cell entry protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D BOQ54_12175 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D BOQ54_12170 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D BOQ54_16490 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D BOQ54_08975 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D BOQ54_16480 sugar ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D BOQ54_08965 sugar ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D BOQ54_16475 sugar ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D BOQ54_08970 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D BOQ54_16485 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D BOQ54_08960 ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein D BOQ54_09580 sugar ABC transporter substrate-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D BOQ54_09590 sugar ABC transporter permease K17317 gtsC; glucose/mannose transport system permease protein D BOQ54_08890 LacI family transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_18230 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_09825 ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_06810 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_07465 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_08895 ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_18240 ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_18245 ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_09820 ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_06805 ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_07455 sugar ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_07470 sugar ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_07450 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_08885 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_18235 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_09815 D-xylose ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_06800 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_10150 rhamnose ABC transporter substrate-binding protein K10559 rhaS; rhamnose transport system substrate-binding protein D BOQ54_10140 branched-chain amino acid ABC transporter permease K10560 rhaP; rhamnose transport system permease protein D BOQ54_10135 branched-chain amino acid ABC transporter permease K10561 rhaQ; rhamnose transport system permease protein D BOQ54_10145 D-xylose ABC transporter ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_17120 ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D BOQ54_13495 glycerol 3-phosphate ABC transporter K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D BOQ54_01250 sn-glycerol-3-phosphate ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D BOQ54_17125 ABC transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D BOQ54_13490 glycerol-3-phosphate transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D BOQ54_01255 glycerol-3-phosphate transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D BOQ54_17130 ABC transporter permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D BOQ54_13485 ABC transporter permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D BOQ54_01260 glycerol-3-phosphate transporter K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D BOQ54_17115 ABC transporter ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D BOQ54_13480 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D BOQ54_02370 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BOQ54_10950 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BOQ54_02375 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D BOQ54_02380 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D BOQ54_02385 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BOQ54_10900 phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D BOQ54_10890 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D BOQ54_10895 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D BOQ54_10905 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D BOQ54_11080 amino acid ABC transporter substrate-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D BOQ54_07390 amino acid ABC transporter substrate-bindnig protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D BOQ54_11075 amino acid ABC transporter permease K09970 aapQ; general L-amino acid transport system permease protein D BOQ54_11070 amino acid ABC transporter permease K09971 aapM; general L-amino acid transport system permease protein D BOQ54_11065 ABC transporter ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D BOQ54_13385 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_13525 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_04205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_18095 ABC transporter permease K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_05215 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_14185 ABC transporter permease K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_15465 amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_00430 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_11935 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_01685 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_13390 branched-chain amino acid ABC transporter permease LivH K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_13520 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_04210 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_18100 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_05205 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_14195 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_15460 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_00435 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_11910 branched-chain amino acid ABC transporter permease LivH K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_01680 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_08065 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_15455 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_04215 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_01675 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_13380 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_13515 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_18105 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_05210 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_14190 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_11915 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_01670 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_13510 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_18085 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_05200 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_14200 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_11920 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_00440 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_00445 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_01665 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_13505 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_18090 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_05220 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_14180 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_15450 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_11925 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_15760 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D BOQ54_15780 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D BOQ54_15775 DL-methionine transporter permease subunit K02072 metI; D-methionine transport system permease protein D BOQ54_15770 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D BOQ54_15140 urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D BOQ54_15145 urea ABC transporter permease subunit UrtB K11960 urtB; urea transport system permease protein D BOQ54_15150 urea ABC transporter permease subunit UrtC K11961 urtC; urea transport system permease protein D BOQ54_15155 urea ABC transporter ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D BOQ54_15160 urea ABC transporter ATP-binding subunit UrtE K11963 urtE; urea transport system ATP-binding protein D BOQ54_16260 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BOQ54_16265 ABC transporter K15581 oppB; oligopeptide transport system permease protein D BOQ54_16270 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D BOQ54_16275 microcin ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D BOQ54_17400 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein D BOQ54_15610 glutathione ABC transporter substrate-binding protein GsiB K13889 gsiB; glutathione transport system substrate-binding protein D BOQ54_15605 glutathione ABC transporter permease GsiC K13890 gsiC; glutathione transport system permease protein D BOQ54_15600 glutathione ABC transporter permease GsiD K13891 gsiD; glutathione transport system permease protein D BOQ54_15615 glutathione ABC transporter ATP-binding protein GsiA K13892 gsiA; glutathione transport system ATP-binding protein D BOQ54_16105 hypothetical protein K13893 yejA; microcin C transport system substrate-binding protein D BOQ54_16095 microcin ABC transporter permease K13894 yejB; microcin C transport system permease protein D BOQ54_16090 peptide ABC transporter permease K13895 yejE; microcin C transport system permease protein D BOQ54_16085 microcin ABC transporter ATP-binding protein K13896 yejF; microcin C transport system ATP-binding protein D BOQ54_19225 hypothetical protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D BOQ54_19220 Fe3+-hydroxamate ABC transporter permease FhuB K23228 fhuB; ferric hydroxamate transport system permease protein D BOQ54_17415 iron-hydroxamate transporter ATP-binding subunit K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D BOQ54_03465 manganese transporter K11707 troA; manganese/zinc/iron transport system substrate-binding protein D BOQ54_03475 zinc ABC transporter permease K11708 troC; manganese/zinc/iron transport system permease protein D BOQ54_03480 zinc ABC transporter permease K11709 troD; manganese/zinc/iron transport system permease protein D BOQ54_03470 manganese ABC transporter ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D BOQ54_08045 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D BOQ54_18760 hypothetical protein K09690 wzm; homopolymeric O-antigen transport system permease protein D BOQ54_15545 hypothetical protein K09690 wzm; homopolymeric O-antigen transport system permease protein D BOQ54_15540 sugar ABC transporter K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D BOQ54_18765 hypothetical protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D BOQ54_01765 ABC transporter K09808 lolC_E; lipoprotein-releasing system permease protein D BOQ54_09150 multidrug ABC transporter substrate-binding protein K09808 lolC_E; lipoprotein-releasing system permease protein D BOQ54_01760 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D BOQ54_09155 ABC transporter K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D BOQ54_02310 heme exporter protein CcmD K02196 ccmD; heme exporter protein D D BOQ54_02305 heme transporter HemC K02195 ccmC; heme exporter protein C D BOQ54_02300 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D BOQ54_02295 heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D BOQ54_07635 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D BOQ54_07630 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D BOQ54_14350 LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D BOQ54_17370 hypothetical protein K19341 nosY; Cu-processing system permease protein D BOQ54_17365 ABC transporter ATP-binding protein K19340 nosF; Cu-processing system ATP-binding protein D BOQ54_02805 ABC transporter permease K09811 ftsX; cell division transport system permease protein D BOQ54_02800 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BOQ54_03965 ABC transporter permease K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D BOQ54_07155 metal ABC transporter permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D BOQ54_12810 protease/lipase ABC transporter permease/ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_02340 type I secretion protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_18400 ABC transporter ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_18835 thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D BOQ54_18830 thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D BOQ54_05475 ABC transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein C 02060 Phosphotransferase system (PTS) [PATH:cdq02060] D BOQ54_03650 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D BOQ54_01015 serine kinase K02784 ptsH; phosphocarrier protein HPr D BOQ54_01020 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D BOQ54_03645 PTS cellobiose transporter subunit IIB K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D BOQ54_03640 PTS sorbitol transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D BOQ54_03635 PTS sorbitol transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component D BOQ54_03660 PTS sugar transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D BOQ54_03655 PTS galactitol transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D BOQ54_03665 PTS sugar transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D BOQ54_02725 phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D BOQ54_14365 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] C 03070 Bacterial secretion system [PATH:cdq03070] D BOQ54_08745 channel protein TolC K12340 tolC; outer membrane protein D BOQ54_16445 EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein K03222 yscJ; type III secretion protein J D BOQ54_16415 EscR/YscR/HrcR family type III secretion system export apparatus protein K03226 yscR; type III secretion protein R D BOQ54_16410 EscS/YscS/HrcS family type III secretion system export apparatus protein K03227 yscS; type III secretion protein S D BOQ54_16405 EscT/YscT/HrcT family type III secretion system export apparatus protein K03228 yscT; type III secretion protein T D BOQ54_16375 hypothetical protein K03229 yscU; type III secretion protein U D BOQ54_16400 hypothetical protein K03230 yscV; type III secretion protein V D BOQ54_16430 EscN/YscN/HrcN family type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D BOQ54_16420 hypothetical protein K03225 yscQ; type III secretion protein Q D BOQ54_16435 hypothetical protein K03223 yscL; type III secretion protein L D BOQ54_10335 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D BOQ54_10330 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D BOQ54_11515 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D BOQ54_09330 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D BOQ54_11340 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D BOQ54_10340 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D BOQ54_01380 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D BOQ54_00640 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BOQ54_02330 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BOQ54_00810 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BOQ54_03925 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D BOQ54_10380 Sec-independent protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA D BOQ54_10375 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D BOQ54_10370 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC D BOQ54_04525 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D BOQ54_03095 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D BOQ54_03230 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D BOQ54_04470 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D BOQ54_15365 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D BOQ54_15390 Hcp1 family type VI secretion system effector K11903 hcp; type VI secretion system secreted protein Hcp D BOQ54_15330 type VI secretion protein K11891 impL; type VI secretion system protein ImpL D BOQ54_15335 type IV secretion protein DotU K11892 impK; type VI secretion system protein ImpK D BOQ54_15410 ClpV1 family T6SS ATPase K11907 vasG; type VI secretion system protein VasG B B 09132 Signal transduction C 02020 Two-component system [PATH:cdq02020] D BOQ54_02365 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BOQ54_02395 phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D BOQ54_02370 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BOQ54_10950 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BOQ54_13685 two-component sensor histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D BOQ54_13690 DNA-binding response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D BOQ54_17390 DNA-binding response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D BOQ54_12485 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BOQ54_06665 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BOQ54_15095 flagellin K02406 fliC; flagellin D BOQ54_15100 flagellin K02406 fliC; flagellin D BOQ54_14975 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BOQ54_05115 sensor histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D BOQ54_05120 DNA-binding response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D BOQ54_06300 C4-dicarboxylate ABC transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_09480 C4-dicarboxylate ABC transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_05135 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_07025 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_03555 C4-dicarboxylate ABC transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_03880 tricarboxylate transporter K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_06295 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_03550 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_05130 tricarboxylic transport K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_07030 tripartite tricarboxylate transporter TctB K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_03885 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_09475 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_05125 tricarboxylic transporter K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_07035 C4-dicarboxylate ABC transporter substrate-binding protein K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_03890 tricarboxylate transporter K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_09470 3-phosphoglycerate dehydrogenase K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_06290 ABC transporter substrate-binding protein K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_08270 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D BOQ54_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D BOQ54_01030 histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D BOQ54_01035 DNA-binding response regulator K14981 chvI; two-component system, OmpR family, response regulator ChvI D BOQ54_11605 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D BOQ54_02860 CoA ester lyase K01644 citE; citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.34] D BOQ54_17295 hypothetical protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D BOQ54_18325 class C beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D BOQ54_16190 fimbrial protein K02651 flp; pilus assembly protein Flp/PilA D BOQ54_16200 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D BOQ54_16205 secretin K02280 cpaC; pilus assembly protein CpaC D BOQ54_16370 type II and III secretion system protein RhcC2 K02280 cpaC; pilus assembly protein CpaC D BOQ54_16215 CtpF protein K02282 cpaE; pilus assembly protein CpaE D BOQ54_16220 protein kinase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D BOQ54_16225 pilus assembly protein K12510 tadB; tight adherence protein B D BOQ54_16230 type II secretion system protein K12511 tadC; tight adherence protein C D BOQ54_16740 [protein-PII] uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59] D BOQ54_08990 transcriptional regulator K04751 glnB; nitrogen regulatory protein P-II 1 D BOQ54_09435 two-component sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D BOQ54_09440 nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D BOQ54_07685 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_08985 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_09445 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D BOQ54_09450 sigma-54-dependent Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D BOQ54_03360 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_17455 ABC transporter substrate-binding protein K08478 pgtC; phosphoglycerate transport regulatory protein PgtC D BOQ54_17450 two-component sensor histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D BOQ54_17445 Fis family transcriptional regulator K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA D BOQ54_19135 two-component sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D BOQ54_19130 Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D BOQ54_14355 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D BOQ54_14865 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BOQ54_15675 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BOQ54_07570 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_16605 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_14845 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_14890 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_10685 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_14880 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BOQ54_15690 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BOQ54_14885 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_15695 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_05420 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_14875 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15115 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15685 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_14870 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BOQ54_15680 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BOQ54_06685 PAS domain-containing sensor histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D BOQ54_10635 PleD family two-component system response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D BOQ54_06470 hypothetical protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] D BOQ54_10640 two-component system response regulator K11443 divK; two-component system, cell cycle response regulator DivK D BOQ54_12020 hybrid sensor histidine kinase/response regulator K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D BOQ54_15700 histidine phosphotransferase K13588 chpT; histidine phosphotransferase ChpT D BOQ54_15670 DNA-binding response regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA D BOQ54_14065 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR D BOQ54_06250 hypothetical protein K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D BOQ54_16850 C4-dicarboxylate ABC transporter permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D BOQ54_13170 C4-dicarboxylate ABC transporter permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D BOQ54_05050 hypothetical protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D BOQ54_10930 C4-dicarboxylate ABC transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D BOQ54_16855 permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D BOQ54_06365 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] D BOQ54_06355 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ D BOQ54_06360 fixJ; DNA-binding response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ D BOQ54_06350 transcriptional regulator K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein D BOQ54_14210 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BOQ54_07675 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BOQ54_01075 two-component sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D BOQ54_01080 two-component system response regulator K15012 regA; two-component system, response regulator RegA D BOQ54_13260 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] D BOQ54_13250 cytochrome c1 K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit D BOQ54_13255 cytochrome b K00410 fbcH; ubiquinol-cytochrome c reductase cytochrome b/c1 subunit D BOQ54_09675 cytochrome C K08738 CYC; cytochrome c D BOQ54_18355 cytochrome c family protein K08738 CYC; cytochrome c D BOQ54_06730 cytochrome c family protein K08738 CYC; cytochrome c D BOQ54_16110 cytochrome c family protein K08738 CYC; cytochrome c D BOQ54_07280 hypothetical protein K08738 CYC; cytochrome c D BOQ54_03345 cytochrome c family protein K08738 CYC; cytochrome c D BOQ54_03460 cytochrome-c oxidase, cbb3-type subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9] D BOQ54_03455 cytochrome-c oxidase, cbb3-type subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II D BOQ54_03450 cytochrome C oxidase Cbb3 K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV D BOQ54_03445 cytochrome-c oxidase, cbb3-type subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III D BOQ54_18840 cytochrome d terminal oxidase subunit 1 K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BOQ54_05860 cytochrome ubiquinol oxidase subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] D BOQ54_18845 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BOQ54_05855 cytochrome d ubiquinol oxidase subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7] D BOQ54_18850 cyd operon protein YbgT K00424 cydX; cytochrome bd-I ubiquinol oxidase subunit X [EC:7.1.1.7] D BOQ54_08745 channel protein TolC K12340 tolC; outer membrane protein D BOQ54_08245 sugar transporter K01991 wza; polysaccharide biosynthesis/export protein D BOQ54_17300 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein D BOQ54_18170 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein D BOQ54_01310 phosphotyrosine protein phosphatase K25307 wzb; low molecular weight protein-tyrosine phosphatase [EC:3.1.3.48] D BOQ54_08250 hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] C 04010 MAPK signaling pathway C 04013 MAPK signaling pathway - fly C 04016 MAPK signaling pathway - plant C 04011 MAPK signaling pathway - yeast C 04012 ErbB signaling pathway C 04014 Ras signaling pathway C 04015 Rap1 signaling pathway C 04310 Wnt signaling pathway C 04330 Notch signaling pathway C 04340 Hedgehog signaling pathway C 04341 Hedgehog signaling pathway - fly C 04350 TGF-beta signaling pathway C 04390 Hippo signaling pathway C 04391 Hippo signaling pathway - fly C 04392 Hippo signaling pathway - multiple species C 04370 VEGF signaling pathway C 04371 Apelin signaling pathway C 04630 JAK-STAT signaling pathway C 04064 NF-kappa B signaling pathway C 04668 TNF signaling pathway C 04066 HIF-1 signaling pathway C 04068 FoxO signaling pathway C 04020 Calcium signaling pathway C 04070 Phosphatidylinositol signaling system C 04072 Phospholipase D signaling pathway C 04071 Sphingolipid signaling pathway C 04024 cAMP signaling pathway C 04022 cGMP-PKG signaling pathway C 04151 PI3K-Akt signaling pathway C 04152 AMPK signaling pathway C 04150 mTOR signaling pathway C 04075 Plant hormone signal transduction B B 09133 Signaling molecules and interaction C 04080 Neuroactive ligand-receptor interaction C 04060 Cytokine-cytokine receptor interaction C 04061 Viral protein interaction with cytokine and cytokine receptor C 04512 ECM-receptor interaction C 04514 Cell adhesion molecules # A09140 Cellular Processes B B 09141 Transport and catabolism C 04144 Endocytosis C 04145 Phagosome C 04142 Lysosome C 04146 Peroxisome C 04140 Autophagy - animal C 04138 Autophagy - yeast C 04136 Autophagy - other C 04137 Mitophagy - animal C 04139 Mitophagy - yeast C 04148 Efferocytosis [PATH:cdq04148] D BOQ54_05275 arginase K01476 rocF; arginase [EC:3.5.3.1] D BOQ54_14585 ornithine decarboxylase K01581 E4.1.1.17; ornithine decarboxylase [EC:4.1.1.17] D BOQ54_13260 ubiquinol-cytochrome c reductase iron-sulfur subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8] B B 09143 Cell growth and death C 04110 Cell cycle C 04111 Cell cycle - yeast C 04112 Cell cycle - Caulobacter C 04113 Meiosis - yeast C 04114 Oocyte meiosis C 04210 Apoptosis C 04214 Apoptosis - fly C 04215 Apoptosis - multiple species C 04216 Ferroptosis C 04217 Necroptosis C 04115 p53 signaling pathway C 04218 Cellular senescence B B 09144 Cellular community - eukaryotes C 04510 Focal adhesion C 04520 Adherens junction C 04530 Tight junction C 04540 Gap junction C 04550 Signaling pathways regulating pluripotency of stem cells B B 09145 Cellular community - prokaryotes C 02024 Quorum sensing [PATH:cdq02024] D BOQ54_09455 RNA chaperone Hfq K03666 hfq; host factor-I protein D BOQ54_09315 anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27] D BOQ54_09310 aminodeoxychorismate/anthranilate synthase component II K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] D BOQ54_18735 hypothetical protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] D BOQ54_07065 3-deoxy-7-phosphoheptulonate synthase K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] D BOQ54_12405 phenazine biosynthesis protein PhzF K06998 phzF; trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17] D BOQ54_04505 hypothetical protein K22955 traI; acyl homoserine lactone synthase [EC:2.3.1.184] D BOQ54_03250 hypothetical protein K22955 traI; acyl homoserine lactone synthase [EC:2.3.1.184] D BOQ54_04510 hypothetical protein K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids D BOQ54_17840 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_05155 spermidine/putrescine ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_10080 spermidine/putrescine ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_19175 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_17200 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_17825 spermidine/putrescine ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_05140 polyamine ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_10100 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_19165 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_17210 spermidine/putrescine ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_17830 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D BOQ54_05145 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D BOQ54_10105 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D BOQ54_19170 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D BOQ54_17835 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D BOQ54_05150 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D BOQ54_10110 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D BOQ54_19180 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D BOQ54_13385 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_13525 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_04205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_18095 ABC transporter permease K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_05215 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_14185 ABC transporter permease K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_15465 amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_00430 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_11935 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_01685 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_13390 branched-chain amino acid ABC transporter permease LivH K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_13520 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_04210 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_18100 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_05205 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_14195 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_15460 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_00435 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_11910 branched-chain amino acid ABC transporter permease LivH K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_01680 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_08065 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_15455 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_04215 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_01675 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_13380 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_13515 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_18105 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_05210 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_14190 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_11915 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_01670 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_13510 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_18085 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_05200 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_14200 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_11920 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_00440 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_00445 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_01665 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_13505 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_18090 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_05220 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_14180 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_15450 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_11925 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_13035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_05225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_14205 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_14210 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BOQ54_07675 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BOQ54_01465 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D BOQ54_13400 GTP cyclohydrolase K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25] D BOQ54_13405 deaminase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D BOQ54_08105 riboflavin biosynthesis protein RibD K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] D BOQ54_16260 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BOQ54_16265 ABC transporter K15581 oppB; oligopeptide transport system permease protein D BOQ54_16270 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D BOQ54_16275 microcin ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D BOQ54_17685 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_16955 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_08455 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_08530 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_17630 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_17920 peptide ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_14820 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_06335 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_11000 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_02970 peptide ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_01125 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_06330 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_16960 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_08450 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_08525 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_17625 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_17680 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_17925 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_14825 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_10995 peptide ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_02965 peptide ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_01130 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_16965 DNA-directed RNA polymerase subunit alpha K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_08445 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_08520 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_17620 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_17675 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_17930 peptide ABC transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_14830 D-ala-D-ala transporter subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_06325 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_10990 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_02960 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_01135 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_16970 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_08460 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_17615 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_06320 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_01140 methionine ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_02955 dppD; dipeptide ABC transporter ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_08515 methionine ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_17665 dppD; dipeptide ABC transporter ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_17935 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_14835 peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_02950 peptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D BOQ54_06315 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D BOQ54_14840 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D BOQ54_17670 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D BOQ54_03565 tagatose-bisphosphate aldolase K01635 lacD; tagatose 1,6-diphosphate aldolase [EC:4.1.2.40] D BOQ54_01380 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D BOQ54_11515 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D BOQ54_09330 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D BOQ54_11340 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D BOQ54_10340 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D BOQ54_00640 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BOQ54_02330 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BOQ54_00810 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BOQ54_03925 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] C 05111 Biofilm formation - Vibrio cholerae C 02025 Biofilm formation - Pseudomonas aeruginosa C 02026 Biofilm formation - Escherichia coli B B 09142 Cell motility C 02030 Bacterial chemotaxis [PATH:cdq02030] D BOQ54_07570 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_16605 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_14845 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_14890 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_10685 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_08890 LacI family transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_18230 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_09825 ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_06810 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_07465 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_17400 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein D BOQ54_14885 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_15695 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_14880 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BOQ54_15690 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BOQ54_05420 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_14875 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15115 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15685 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15120 hypothetical protein K03414 cheZ; chemotaxis protein CheZ D BOQ54_14870 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BOQ54_15680 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BOQ54_14865 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BOQ54_15675 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BOQ54_14995 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BOQ54_14980 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BOQ54_14990 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D BOQ54_14975 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BOQ54_13875 hypothetical protein K02557 motB; chemotaxis protein MotB D BOQ54_15080 hypothetical protein K02557 motB; chemotaxis protein MotB C 02040 Flagellar assembly [PATH:cdq02040] D BOQ54_15050 flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D BOQ54_15090 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BOQ54_14995 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BOQ54_14960 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BOQ54_15665 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D BOQ54_15020 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL D BOQ54_14980 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BOQ54_14990 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D BOQ54_12025 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D BOQ54_15015 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BOQ54_14925 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BOQ54_14915 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BOQ54_14920 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BOQ54_15000 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D BOQ54_15040 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D BOQ54_15060 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D BOQ54_15055 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D BOQ54_14930 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD D BOQ54_14955 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D BOQ54_14965 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D BOQ54_15045 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D BOQ54_15025 flagellar biosynthesis protein FlgH K02393 flgH; flagellar L-ring protein FlgH D BOQ54_15035 flagellar biosynthesis protein FlgI K02394 flgI; flagellar P-ring protein FlgI D BOQ54_14905 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ D BOQ54_14950 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D BOQ54_14945 hypothetical protein K02397 flgL; flagellar hook-associated protein 3 FlgL D BOQ54_15095 flagellin K02406 fliC; flagellin D BOQ54_15100 flagellin K02406 fliC; flagellin D BOQ54_14975 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BOQ54_13875 hypothetical protein K02557 motB; chemotaxis protein MotB D BOQ54_15080 hypothetical protein K02557 motB; chemotaxis protein MotB D BOQ54_15075 hypothetical protein K10564 motC; chemotaxis protein MotC D BOQ54_15070 hypothetical protein K10565 motD; chemotaxis protein MotD D BOQ54_12970 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D BOQ54_14355 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor C 04814 Motor proteins C 04820 Cytoskeleton in muscle cells D BOQ54_09375 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] C 04810 Regulation of actin cytoskeleton # A09150 Organismal Systems B B 09151 Immune system C 04640 Hematopoietic cell lineage C 04610 Complement and coagulation cascades C 04611 Platelet activation C 04613 Neutrophil extracellular trap formation C 04620 Toll-like receptor signaling pathway C 04624 Toll and Imd signaling pathway C 04621 NOD-like receptor signaling pathway C 04622 RIG-I-like receptor signaling pathway C 04623 Cytosolic DNA-sensing pathway C 04625 C-type lectin receptor signaling pathway C 04650 Natural killer cell mediated cytotoxicity C 04612 Antigen processing and presentation C 04660 T cell receptor signaling pathway C 04658 Th1 and Th2 cell differentiation C 04659 Th17 cell differentiation C 04657 IL-17 signaling pathway C 04662 B cell receptor signaling pathway C 04664 Fc epsilon RI signaling pathway C 04666 Fc gamma R-mediated phagocytosis C 04670 Leukocyte transendothelial migration C 04672 Intestinal immune network for IgA production C 04062 Chemokine signaling pathway B B 09152 Endocrine system C 04911 Insulin secretion C 04910 Insulin signaling pathway C 04922 Glucagon signaling pathway C 04923 Regulation of lipolysis in adipocytes C 04920 Adipocytokine signaling pathway C 03320 PPAR signaling pathway C 04929 GnRH secretion C 04912 GnRH signaling pathway C 04913 Ovarian steroidogenesis C 04915 Estrogen signaling pathway C 04914 Progesterone-mediated oocyte maturation C 04917 Prolactin signaling pathway C 04921 Oxytocin signaling pathway C 04926 Relaxin signaling pathway C 04935 Growth hormone synthesis, secretion and action C 04918 Thyroid hormone synthesis C 04919 Thyroid hormone signaling pathway C 04928 Parathyroid hormone synthesis, secretion and action C 04916 Melanogenesis C 04924 Renin secretion C 04614 Renin-angiotensin system C 04925 Aldosterone synthesis and secretion C 04927 Cortisol synthesis and secretion B B 09153 Circulatory system C 04260 Cardiac muscle contraction C 04261 Adrenergic signaling in cardiomyocytes C 04270 Vascular smooth muscle contraction B B 09154 Digestive system C 04970 Salivary secretion C 04971 Gastric acid secretion C 04972 Pancreatic secretion C 04976 Bile secretion C 04973 Carbohydrate digestion and absorption C 04974 Protein digestion and absorption C 04975 Fat digestion and absorption C 04979 Cholesterol metabolism C 04977 Vitamin digestion and absorption C 04980 Cobalamin transport and metabolism [PATH:cdq04980] D BOQ54_04315 ATP:cob(I)alamin adenosyltransferase K00798 MMAB; cob(I)alamin adenosyltransferase [EC:2.5.1.17] D BOQ54_08570 ATPase/protein kinase K07588 MMAA; GTPase [EC:3.6.5.-] D BOQ54_08605 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D BOQ54_08610 methylmalonyl-CoA mutase K01847 MUT; methylmalonyl-CoA mutase [EC:5.4.99.2] D BOQ54_12745 methionine synthase K00548 metH; 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] C 04978 Mineral absorption B B 09155 Excretory system C 04962 Vasopressin-regulated water reabsorption C 04960 Aldosterone-regulated sodium reabsorption C 04961 Endocrine and other factor-regulated calcium reabsorption C 04964 Proximal tubule bicarbonate reclamation C 04966 Collecting duct acid secretion B B 09156 Nervous system C 04724 Glutamatergic synapse C 04727 GABAergic synapse C 04725 Cholinergic synapse C 04728 Dopaminergic synapse C 04726 Serotonergic synapse C 04720 Long-term potentiation C 04730 Long-term depression C 04723 Retrograde endocannabinoid signaling C 04721 Synaptic vesicle cycle C 04722 Neurotrophin signaling pathway B B 09157 Sensory system C 04744 Phototransduction C 04745 Phototransduction - fly C 04740 Olfactory transduction C 04742 Taste transduction C 04750 Inflammatory mediator regulation of TRP channels B B 09158 Development and regeneration C 04320 Dorso-ventral axis formation C 04360 Axon guidance C 04361 Axon regeneration C 04380 Osteoclast differentiation B B 09149 Aging C 04211 Longevity regulating pathway C 04212 Longevity regulating pathway - worm C 04213 Longevity regulating pathway - multiple species B B 09159 Environmental adaptation C 04710 Circadian rhythm C 04713 Circadian entrainment C 04711 Circadian rhythm - fly C 04712 Circadian rhythm - plant C 04714 Thermogenesis C 04626 Plant-pathogen interaction # A09160 Human Diseases B B 09161 Cancer: overview C 05200 Pathways in cancer C 05202 Transcriptional misregulation in cancer C 05206 MicroRNAs in cancer C 05205 Proteoglycans in cancer C 05204 Chemical carcinogenesis - DNA adducts C 05207 Chemical carcinogenesis - receptor activation C 05208 Chemical carcinogenesis - reactive oxygen species C 05203 Viral carcinogenesis C 05230 Central carbon metabolism in cancer C 05231 Choline metabolism in cancer C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer B B 09162 Cancer: specific types C 05210 Colorectal cancer C 05212 Pancreatic cancer C 05225 Hepatocellular carcinoma C 05226 Gastric cancer C 05214 Glioma C 05216 Thyroid cancer C 05221 Acute myeloid leukemia C 05220 Chronic myeloid leukemia C 05217 Basal cell carcinoma C 05218 Melanoma C 05211 Renal cell carcinoma C 05219 Bladder cancer C 05215 Prostate cancer C 05213 Endometrial cancer C 05224 Breast cancer C 05222 Small cell lung cancer C 05223 Non-small cell lung cancer B B 09172 Infectious disease: viral C 05166 Human T-cell leukemia virus 1 infection C 05170 Human immunodeficiency virus 1 infection C 05161 Hepatitis B C 05160 Hepatitis C C 05171 Coronavirus disease - COVID-19 C 05164 Influenza A C 05162 Measles C 05168 Herpes simplex virus 1 infection C 05163 Human cytomegalovirus infection C 05167 Kaposi sarcoma-associated herpesvirus infection C 05169 Epstein-Barr virus infection C 05165 Human papillomavirus infection B B 09171 Infectious disease: bacterial C 05110 Vibrio cholerae infection C 05120 Epithelial cell signaling in Helicobacter pylori infection C 05130 Pathogenic Escherichia coli infection C 05132 Salmonella infection C 05131 Shigellosis C 05135 Yersinia infection C 05133 Pertussis C 05134 Legionellosis C 05150 Staphylococcus aureus infection C 05152 Tuberculosis C 05100 Bacterial invasion of epithelial cells B B 09174 Infectious disease: parasitic C 05146 Amoebiasis C 05144 Malaria C 05145 Toxoplasmosis C 05140 Leishmaniasis C 05142 Chagas disease C 05143 African trypanosomiasis B B 09163 Immune disease C 05310 Asthma C 05322 Systemic lupus erythematosus C 05323 Rheumatoid arthritis C 05320 Autoimmune thyroid disease C 05321 Inflammatory bowel disease C 05330 Allograft rejection C 05332 Graft-versus-host disease C 05340 Primary immunodeficiency B B 09164 Neurodegenerative disease C 05010 Alzheimer disease C 05012 Parkinson disease C 05014 Amyotrophic lateral sclerosis C 05016 Huntington disease C 05017 Spinocerebellar ataxia C 05020 Prion disease C 05022 Pathways of neurodegeneration - multiple diseases B B 09165 Substance dependence C 05030 Cocaine addiction C 05031 Amphetamine addiction C 05032 Morphine addiction C 05033 Nicotine addiction C 05034 Alcoholism B B 09166 Cardiovascular disease C 05417 Lipid and atherosclerosis C 05418 Fluid shear stress and atherosclerosis C 05410 Hypertrophic cardiomyopathy C 05412 Arrhythmogenic right ventricular cardiomyopathy C 05414 Dilated cardiomyopathy C 05415 Diabetic cardiomyopathy C 05416 Viral myocarditis B B 09167 Endocrine and metabolic disease C 04930 Type II diabetes mellitus C 04940 Type I diabetes mellitus C 04950 Maturity onset diabetes of the young C 04936 Alcoholic liver disease C 04932 Non-alcoholic fatty liver disease C 04931 Insulin resistance C 04933 AGE-RAGE signaling pathway in diabetic complications C 04934 Cushing syndrome B B 09175 Drug resistance: antimicrobial C 01501 beta-Lactam resistance [PATH:cdq01501] D BOQ54_00060 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D BOQ54_10400 beta-hexosaminidase K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52] D BOQ54_18320 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D BOQ54_18325 class C beta-lactamase K01467 ampC; beta-lactamase class C [EC:3.5.2.6] D BOQ54_16260 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BOQ54_16265 ABC transporter K15581 oppB; oligopeptide transport system permease protein D BOQ54_16270 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D BOQ54_16275 microcin ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D BOQ54_03025 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_01770 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_03030 multidrug transporter AcrB K18138 acrB; multidrug efflux pump D BOQ54_08745 channel protein TolC K12340 tolC; outer membrane protein D BOQ54_09890 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_06505 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_01055 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_12695 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] C 01502 Vancomycin resistance [PATH:cdq01502] D BOQ54_19065 biotin carboxylase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BOQ54_12650 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BOQ54_07950 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BOQ54_12685 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] D BOQ54_12680 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BOQ54_12665 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cdq01503] D BOQ54_09885 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BOQ54_12485 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BOQ54_06665 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BOQ54_03025 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_01770 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_03030 multidrug transporter AcrB K18138 acrB; multidrug efflux pump D BOQ54_08745 channel protein TolC K12340 tolC; outer membrane protein D BOQ54_09255 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] B B 09176 Drug resistance: antineoplastic C 01521 EGFR tyrosine kinase inhibitor resistance C 01524 Platinum drug resistance C 01523 Antifolate resistance C 01522 Endocrine resistance # A09180 Brite Hierarchies B B 09181 Protein families: metabolism C 01000 Enzymes [BR:cdq01000] C 01001 Protein kinases [BR:cdq01001] D BOQ54_15315 hypothetical protein K12132 prkC; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1] D BOQ54_08250 hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D BOQ54_12315 hypothetical protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D BOQ54_17275 hypothetical protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D BOQ54_18205 hypothetical protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D BOQ54_02365 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BOQ54_13685 two-component sensor histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D BOQ54_05115 sensor histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D BOQ54_01030 histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D BOQ54_09435 two-component sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D BOQ54_09445 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D BOQ54_17450 two-component sensor histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D BOQ54_19135 two-component sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D BOQ54_14885 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_15695 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_06685 PAS domain-containing sensor histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D BOQ54_06470 hypothetical protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] D BOQ54_12020 hybrid sensor histidine kinase/response regulator K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D BOQ54_06365 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] D BOQ54_01075 two-component sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] C 01009 Protein phosphatases and associated proteins [BR:cdq01009] D BOQ54_00235 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D BOQ54_12480 phosphoserine phosphatase SerB K01079 serB; phosphoserine phosphatase [EC:3.1.3.3] C 01002 Peptidases and inhibitors [BR:cdq01002] D BOQ54_05395 signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36] D BOQ54_16195 peptidase K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D BOQ54_19040 hypothetical protein K08566 pla; plasminogen activator [EC:3.4.23.48] D BOQ54_08565 hypothetical protein K01304 pcp; pyroglutamyl-peptidase [EC:3.4.19.3] D BOQ54_07785 glutamine-hydrolyzing GMP synthase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BOQ54_02050 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BOQ54_13570 glutamine amidotransferase K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] D BOQ54_07935 amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14] D BOQ54_14105 glutamate synthase subunit alpha K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13] D BOQ54_16890 aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BOQ54_09780 glutamine--fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16] D BOQ54_12840 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4] D BOQ54_14740 protease K05520 yhbO; deglycase [EC:3.5.1.124] D BOQ54_11505 protease K05520 yhbO; deglycase [EC:3.5.1.124] D BOQ54_14010 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D BOQ54_08090 murein L,D-transpeptidase K21470 ycbB; L,D-transpeptidase YcbB D BOQ54_06690 aminopeptidase N K01256 pepN; aminopeptidase N [EC:3.4.11.2] D BOQ54_14000 oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-] D BOQ54_05380 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-] D BOQ54_05385 peptidase M16 K07263 pqqL; zinc protease [EC:3.4.24.-] D BOQ54_07640 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D BOQ54_16335 leucyl aminopeptidase K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1] D BOQ54_11280 hypothetical protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D BOQ54_10300 carboxypeptidase K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D BOQ54_06660 peptidase M20 K01295 cpg; glutamate carboxypeptidase [EC:3.4.17.11] D BOQ54_11005 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D BOQ54_16005 succinyl-diaminopimelate desuccinylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18] D BOQ54_01265 Zn-dependent hydrolase K02083 allC; allantoate deiminase [EC:3.5.3.9] D BOQ54_11790 type I methionyl aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18] D BOQ54_13740 Xaa-Pro dipeptidase K01271 pepQ; Xaa-Pro dipeptidase [EC:3.4.13.9] D BOQ54_12595 X-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9] D BOQ54_15300 aminopeptidase K19689 ampS; aminopeptidase [EC:3.4.11.-] D BOQ54_13620 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D BOQ54_02120 zinc metalloprotease HtpX K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D BOQ54_01095 peptidase M48 Ste24p K03799 htpX; heat shock protein HtpX [EC:3.4.24.-] D BOQ54_09235 RIP metalloprotease RseP K11749 rseP; regulator of sigma E protease [EC:3.4.24.-] D BOQ54_15590 aminopeptidase K16203 dppA1; D-amino peptidase [EC:3.4.11.-] D BOQ54_14420 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D BOQ54_15595 aminopeptidase K01266 dmpA; D-aminopeptidase [EC:3.4.11.19] D BOQ54_12485 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BOQ54_06665 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BOQ54_06435 S9 family peptidase K01354 ptrB; oligopeptidase B [EC:3.4.21.83] D BOQ54_10045 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BOQ54_09020 clpP; ATP-dependent Clp protease proteolytic subunit K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] D BOQ54_09030 endopeptidase La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] D BOQ54_09285 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BOQ54_08000 signal peptidase I K03100 lepB; signal peptidase I [EC:3.4.21.89] D BOQ54_03985 peptidase S41 K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102] D BOQ54_00975 S49 family peptidase K04773 sppA; protease IV [EC:3.4.21.-] D BOQ54_04310 rhomboid family intramembrane serine protease K07059 K07059; rhomboid family protein D BOQ54_06550 peptidase U35 K06904 GP4; Escherichia/Staphylococcus phage prohead protease D BOQ54_00875 HslU--HslV peptidase proteolytic subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] D BOQ54_15580 beta-aspartyl-peptidase K13051 ASRGL1; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] D BOQ54_02245 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D BOQ54_05075 gamma-glutamyltransferase K00681 ggt; gamma-glutamyltranspeptidase / glutathione hydrolase [EC:2.3.2.2 3.4.19.13] D BOQ54_17980 U32 family peptidase K24845 ubiV; O2-independent ubiquinone biosynthesis protein UbiV D BOQ54_17985 protease K24844 ubiU; O2-independent ubiquinone biosynthesis protein UbiU D BOQ54_10835 alpha-2-macroglobulin K06894 yfhM; alpha-2-macroglobulin D BOQ54_12495 protease modulator HflC K04087 hflC; modulator of FtsH protease HflC D BOQ54_12500 HflK protein K04088 hflK; modulator of FtsH protease HflK C 01003 Glycosyltransferases [BR:cdq01003] D BOQ54_12195 alpha-mannosyltransferase K27597 K27597; 1,2-diacylglycerol 3-alpha-glucosyltransferase/glucuronosyltransferase [EC:2.4.1.337 2.4.1.-] D BOQ54_01445 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D BOQ54_10830 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D BOQ54_09890 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_06505 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_01055 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_18200 hypothetical protein K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D BOQ54_12345 hypothetical protein K05946 tagA; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase [EC:2.4.1.187] D BOQ54_13435 glucan biosynthesis glucosyltransferase H K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D BOQ54_09765 glucan biosynthesis glucosyltransferase H K03669 mdoH; membrane glycosyltransferase [EC:2.4.1.-] D BOQ54_00175 alpha,alpha-trehalose-phosphate synthase (UDP-forming) K00697 otsA; trehalose 6-phosphate synthase [EC:2.4.1.15 2.4.1.347] C 01005 Lipopolysaccharide biosynthesis proteins [BR:cdq01005] D BOQ54_09255 acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] D BOQ54_09265 lipid-A-disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182] D BOQ54_12630 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] D BOQ54_09245 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] D BOQ54_09260 hypothetical protein K09949 lpxI; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] D BOQ54_05535 tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] D BOQ54_02255 lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-] D BOQ54_05540 3-deoxy-D-manno-octulosonic acid transferase K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] D BOQ54_04320 hypothetical protein K12976 pagL; lipid A 3-O-deacylase [EC:3.1.1.-] D BOQ54_09345 3-deoxy-8-phosphooctulonate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] D BOQ54_16115 3-deoxy-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] D BOQ54_14140 KpsF/GutQ family protein K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13] D BOQ54_18735 hypothetical protein K12990 rfbF; rhamnosyltransferase [EC:2.4.1.-] C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cdq01011] D BOQ54_03750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] D BOQ54_12655 UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98] D BOQ54_12660 UDP-N-acetylmuramate--L-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] D BOQ54_12675 murD; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D BOQ54_12690 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] D BOQ54_19065 biotin carboxylase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BOQ54_12650 D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4] D BOQ54_07950 alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1] D BOQ54_11990 glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3] D BOQ54_12680 phospho-N-acetylmuramoyl-pentapeptide-transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13] D BOQ54_12665 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] D BOQ54_16625 undecaprenyl-diphosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27] D BOQ54_03970 hypothetical protein K19302 bcrC; undecaprenyl-diphosphatase [EC:3.6.1.27] D BOQ54_08660 murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D BOQ54_00890 murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D BOQ54_09890 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_06505 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_01055 penicillin-binding protein K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4] D BOQ54_10830 penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28] D BOQ54_12695 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BOQ54_10045 D-alanyl-D-alanine carboxypeptidase K07258 dacC; serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] D BOQ54_01445 monofunctional biosynthetic peptidoglycan transglycosylase K03814 mtgA; monofunctional glycosyltransferase [EC:2.4.99.28] D BOQ54_14010 hypothetical protein K21470 ycbB; L,D-transpeptidase YcbB D BOQ54_08090 murein L,D-transpeptidase K21470 ycbB; L,D-transpeptidase YcbB D BOQ54_14420 penicillin-insensitive murein endopeptidase K07261 mepA; penicillin-insensitive murein DD-endopeptidase [EC:3.4.24.-] D BOQ54_07495 hypothetical protein K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D BOQ54_00820 hypothetical protein K08304 mltA; peptidoglycan lytic transglycosylase A [EC:4.2.2.29] D BOQ54_14120 lytic transglycosylase K08305 mltB; peptidoglycan lytic transglycosylase B [EC:4.2.2.29] D BOQ54_07595 aminodeoxychorismate lyase K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29] D BOQ54_10040 hypothetical protein K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29] D BOQ54_09885 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] C 01004 Lipid biosynthesis proteins [BR:cdq01004] D BOQ54_07575 [acyl-carrier-protein] S-malonyltransferase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] D BOQ54_07820 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BOQ54_08160 3-oxoacyl-ACP synthase K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] D BOQ54_00200 beta-ketoacyl-[acyl-carrier-protein] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] D BOQ54_07590 beta-ketoacyl-[acyl-carrier-protein] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_02270 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_02275 beta-ketoacyl-ACP synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] D BOQ54_03570 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_07580 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_12365 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_13355 fabG; 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_15475 3-oxoacyl-[acyl-carrier-protein] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_15480 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_00380 3-oxoacyl-ACP reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_02265 short-chain dehydrogenase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_07845 oxidoreductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] D BOQ54_00195 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA K01716 fabA; 3-hydroxyacyl-[acyl-carrier protein] dehydratase / trans-2-decenoyl-[acyl-carrier protein] isomerase [EC:4.2.1.59 5.3.3.14] D BOQ54_09250 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BOQ54_02280 beta-hydroxyacyl-ACP dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59] D BOQ54_06175 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BOQ54_00205 enoyl-[acyl-carrier-protein] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10] D BOQ54_02190 arylesterase K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D BOQ54_12780 hypothetical protein K10804 tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5] D BOQ54_01605 acyl-CoA thioesterase II K10805 tesB; acyl-CoA thioesterase II [EC:3.1.2.-] D BOQ54_01885 AMP-dependent synthetase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_02100 acetate--CoA ligase K01895 ACSS1_2; acetyl-CoA synthetase [EC:6.2.1.1] D BOQ54_13925 prpE; propionyl-CoA synthetase K01908 ACSS3; propionyl-CoA synthetase [EC:6.2.1.17] D BOQ54_07710 acetoacetate--CoA ligase K01907 AACS; acetoacetyl-CoA synthetase [EC:6.2.1.16] D BOQ54_13035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_05225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_14205 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_18485 acyl-CoA synthetase K00666 K00666; fatty-acyl-CoA synthase [EC:6.2.1.-] D BOQ54_08155 phosphate acyltransferase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274] D BOQ54_10610 glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275] D BOQ54_02815 1-acyl-sn-glycerol-3-phosphate acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] C 01008 Polyketide biosynthesis proteins [BR:cdq01008] D BOQ54_09695 type III polyketide synthase K16167 bpsA; alkylresorcinol/alkylpyrone synthase D BOQ54_09690 hypothetical protein K16168 bpsB; methyltransferase C 01006 Prenyltransferases [BR:cdq01006] D BOQ54_01450 geranylgeranyl pyrophosphate synthase K00795 ispA; farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10] D BOQ54_05885 polyprenyl synthetase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90] D BOQ54_09220 di-trans,poly-cis-decaprenylcistransferase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31] D BOQ54_10320 phytoene/squalene synthase family protein K02291 crtB; 15-cis-phytoene synthase [EC:2.5.1.32] D BOQ54_12475 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D BOQ54_05565 4-hydroxybenzoate polyprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39] D BOQ54_05750 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] C 01007 Amino acid related enzymes [BR:cdq01007] D BOQ54_00525 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D BOQ54_09275 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_07085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_04410 tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D BOQ54_09915 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BOQ54_00895 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D BOQ54_07130 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BOQ54_10410 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BOQ54_10060 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BOQ54_05400 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BOQ54_08755 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BOQ54_00725 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BOQ54_10475 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BOQ54_05495 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BOQ54_05920 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BOQ54_05930 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BOQ54_10365 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BOQ54_09145 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BOQ54_11625 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BOQ54_12010 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BOQ54_16510 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BOQ54_16505 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BOQ54_14705 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_13065 aspartate aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1] D BOQ54_11200 aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-] D BOQ54_14390 aminotransferase K14267 dapC; N-succinyldiaminopimelate aminotransferase [EC:2.6.1.17] D BOQ54_02840 histidinol-phosphate transaminase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9] D BOQ54_03745 5-aminolevulinic acid synthase K00643 E2.3.1.37; 5-aminolevulinate synthase [EC:2.3.1.37] D BOQ54_07805 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47] D BOQ54_05430 aspartate aminotransferase family protein K00822 E2.6.1.18; beta-alanine--pyruvate transaminase [EC:2.6.1.18] D BOQ54_05280 ornithine--oxo-acid transaminase K00819 rocD; ornithine--oxo-acid transaminase [EC:2.6.1.13] D BOQ54_02405 acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] D BOQ54_17640 4-aminobutyrate transaminase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19] D BOQ54_07815 adenosylmethionine--8-amino-7-oxononanoate transaminase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] D BOQ54_15585 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21] D BOQ54_08650 branched chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_13700 branched-chain amino acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42] D BOQ54_13585 phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52] C 00199 Cytochrome P450 C 00194 Photosynthesis proteins [BR:cdq00194] D BOQ54_01890 F0F1 ATP synthase subunit epsilon K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon D BOQ54_01895 F0F1 ATP synthase subunit beta K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1] D BOQ54_01900 F0F1 ATP synthase subunit gamma K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma D BOQ54_01905 F0F1 ATP synthase subunit alpha K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1] D BOQ54_01910 ATP synthase F1 subunit delta K02113 ATPF1D; F-type H+-transporting ATPase subunit delta D BOQ54_05695 F0F1 ATP synthase subunit B' K02109 ATPF0B; F-type H+-transporting ATPase subunit b D BOQ54_05700 ATP F0F1 synthase subunit B K02109 ATPF0B; F-type H+-transporting ATPase subunit b D BOQ54_05690 F0F1 ATP synthase subunit C K02110 ATPF0C; F-type H+-transporting ATPase subunit c D BOQ54_05685 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D BOQ54_05680 ATP F0F1 synthase subunit I K02116 atpI; ATP synthase protein I B B 09182 Protein families: genetic information processing C 03000 Transcription factors [BR:cdq03000] D BOQ54_18945 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D BOQ54_12130 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D BOQ54_12155 hypothetical protein K13652 K13652; AraC family transcriptional regulator D BOQ54_03850 bifunctional transcriptional activator/DNA repair enzyme protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BOQ54_16675 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BOQ54_18540 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BOQ54_17850 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BOQ54_06815 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BOQ54_01225 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BOQ54_18950 pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D BOQ54_07875 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BOQ54_18320 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase D BOQ54_01795 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor D BOQ54_17790 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BOQ54_07430 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BOQ54_06785 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BOQ54_18500 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D BOQ54_06760 LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor D BOQ54_10885 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BOQ54_07420 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BOQ54_10740 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BOQ54_15485 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BOQ54_17695 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BOQ54_18655 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BOQ54_18125 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity D BOQ54_07900 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_01865 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_00130 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_12090 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_04240 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_17575 AsnC family transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D BOQ54_09485 ArsR family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator D BOQ54_04510 hypothetical protein K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids D BOQ54_00485 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D BOQ54_00450 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D BOQ54_18395 MarR family transcriptional regulator K25883 expG; MarR family transcriptional regulator, exopolysaccharide II synthesis transcriptional activator D BOQ54_01815 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BOQ54_01420 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR D BOQ54_00920 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BOQ54_01465 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D BOQ54_04150 transcriptional repressor K09826 irr; Fur family transcriptional regulator, iron response regulator D BOQ54_00190 transcriptional repressor K09826 irr; Fur family transcriptional regulator, iron response regulator D BOQ54_04110 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor D BOQ54_14210 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BOQ54_07675 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BOQ54_06350 transcriptional regulator K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein D BOQ54_17965 Crp/Fnr family transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator D BOQ54_18015 Crp/Fnr family transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator D BOQ54_18580 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor D BOQ54_17110 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BOQ54_03340 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BOQ54_18790 transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator D BOQ54_12230 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization D BOQ54_02985 transcriptional regulator, RpiR family protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D BOQ54_09125 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BOQ54_15645 transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BOQ54_17190 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BOQ54_12280 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D BOQ54_08595 transcriptional regulator K07727 K07727; putative transcriptional regulator D BOQ54_01860 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] D BOQ54_17350 4Fe-4S binding protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D BOQ54_02485 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BOQ54_17800 plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_04600 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_00740 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_03120 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_02540 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D BOQ54_00120 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D BOQ54_02570 nucleoside-diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D BOQ54_07190 transcriptional regulator K07734 paiB; transcriptional regulator D BOQ54_05800 hypothetical protein K07735 algH; putative transcriptional regulator D BOQ54_12040 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BOQ54_03375 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D BOQ54_08100 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D BOQ54_12710 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ D BOQ54_08765 exopolysaccharide biosynthesis protein K25885 exoR; exopolysaccharide production negative regulator C 03021 Transcription machinery [BR:cdq03021] D BOQ54_11320 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BOQ54_11475 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BOQ54_11470 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BOQ54_07540 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D BOQ54_12970 RNA polymerase sigma factor RpoD K03086 rpoD; RNA polymerase primary sigma factor D BOQ54_18875 RNA polymerase subunit sigma-24 K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D BOQ54_18300 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D BOQ54_14765 RNA polymerase subunit sigma K03088 rpoE; RNA polymerase sigma-70 factor, ECF subfamily D BOQ54_13555 RNA polymerase factor sigma-32 K03089 rpoH; RNA polymerase sigma-32 factor D BOQ54_14355 RNA polymerase sigma-54 factor K03092 rpoN; RNA polymerase sigma-54 factor D BOQ54_15965 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D BOQ54_08120 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D BOQ54_11510 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D BOQ54_12040 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BOQ54_03375 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D BOQ54_13000 transcription elongation factor GreA K03624 greA; transcription elongation factor GreA D BOQ54_00770 transcription termination factor Rho K03628 rho; transcription termination factor Rho C 03019 Messenger RNA biogenesis [BR:cdq03019] D BOQ54_09880 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12] D BOQ54_08005 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BOQ54_09130 MBL fold metallo-hydrolase K12574 rnj; ribonuclease J [EC:3.1.-.-] D BOQ54_07560 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D BOQ54_10805 RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7] D BOQ54_11690 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BOQ54_09375 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BOQ54_15935 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] D BOQ54_00770 transcription termination factor Rho K03628 rho; transcription termination factor Rho D BOQ54_16680 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BOQ54_05470 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_11820 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_09455 RNA chaperone Hfq K03666 hfq; host factor-I protein D BOQ54_10490 RNA degradosome polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] D BOQ54_13280 hypothetical protein K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] D BOQ54_03975 RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-] D BOQ54_16600 ATP-dependent helicase HrpB K03579 hrpB; ATP-dependent RNA helicase HrpB [EC:5.6.2.6] C 03041 Spliceosome C 03011 Ribosome [BR:cdq03011] D BOQ54_00970 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1 D BOQ54_09200 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2 D BOQ54_11410 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3 D BOQ54_11985 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4 D BOQ54_11355 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5 D BOQ54_07980 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6 D BOQ54_11460 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7 D BOQ54_11370 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8 D BOQ54_08330 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9 D BOQ54_11445 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10 D BOQ54_11325 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11 D BOQ54_11465 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12 D BOQ54_11330 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13 D BOQ54_11375 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14 D BOQ54_15940 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15 D BOQ54_03930 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16 D BOQ54_11395 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17 D BOQ54_07975 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18 D BOQ54_11420 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19 D BOQ54_16810 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20 D BOQ54_13965 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21 D BOQ54_11490 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1 D BOQ54_11425 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2 D BOQ54_11440 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3 D BOQ54_11435 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4 D BOQ54_11380 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5 D BOQ54_11365 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6 D BOQ54_07965 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9 D BOQ54_11485 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10 D BOQ54_11495 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11 D BOQ54_11480 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12 D BOQ54_08325 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13 D BOQ54_11390 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14 D BOQ54_11345 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15 D BOQ54_11405 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16 D BOQ54_11315 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17 D BOQ54_11360 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18 D BOQ54_02935 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19 D BOQ54_16515 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20 D BOQ54_04040 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21 D BOQ54_11415 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22 D BOQ54_11430 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23 D BOQ54_11385 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24 D BOQ54_04035 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27 D BOQ54_02515 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28 D BOQ54_11400 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29 D BOQ54_11350 50S ribosomal protein L30 K02907 RP-L30; large subunit ribosomal protein L30 D BOQ54_13885 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31 D BOQ54_01440 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32 D BOQ54_10630 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33 D BOQ54_01370 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34 D BOQ54_16520 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35 D BOQ54_14055 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36 D BOQ54_13750 50S ribosomal protein L25/general stress protein Ctc K02897 RP-L25; large subunit ribosomal protein L25 D BOQ54_03055 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BOQ54_04445 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BOQ54_03035 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BOQ54_04425 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BOQ54_03050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BOQ54_04440 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA C 03009 Ribosome biogenesis [BR:cdq03009] D BOQ54_08005 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BOQ54_08010 GTPase Era K03595 era; GTPase D BOQ54_04020 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] D BOQ54_12040 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BOQ54_03375 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D BOQ54_15965 transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA D BOQ54_08120 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB D BOQ54_11510 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG D BOQ54_07615 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D BOQ54_07780 MFS transporter K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BOQ54_02115 MFS transporter K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D BOQ54_05360 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D BOQ54_05575 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D BOQ54_00750 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BOQ54_12705 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D BOQ54_16760 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D BOQ54_06065 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D BOQ54_11540 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D BOQ54_07750 rRNA methyltransferase K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D BOQ54_03995 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D BOQ54_13190 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D BOQ54_02225 23S rRNA (adenine(2503)-C(2))-methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D BOQ54_06060 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D BOQ54_02335 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BOQ54_05355 hypothetical protein K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BOQ54_18935 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D BOQ54_11300 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D BOQ54_13550 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D BOQ54_00915 ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] D BOQ54_05790 GNAT family N-acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] D BOQ54_03935 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM D BOQ54_10030 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] D BOQ54_12605 SAM-dependent methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] D BOQ54_09880 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12] D BOQ54_10600 Holliday junction DNA helicase RuvA K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] D BOQ54_07915 ribosome biogenesis GTPase Der K03977 engA; GTPase D BOQ54_09460 GTPase HflX K03665 hflX; GTPase D BOQ54_06010 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D BOQ54_07535 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] D BOQ54_15950 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A D BOQ54_15970 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP D BOQ54_04000 ribosome silencing factor K09710 ybeB; ribosome-associated protein D BOQ54_00940 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor D BOQ54_14360 ribosomal subunit interface protein K05808 hpf; ribosome hibernation promoting factor D BOQ54_13760 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C 03016 Transfer RNA biogenesis [BR:cdq03016] D BOQ54_13185 ribonuclease T K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19] D BOQ54_09275 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_07085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_09145 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15] D BOQ54_05400 isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5] D BOQ54_00725 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BOQ54_10060 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10] D BOQ54_10410 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BOQ54_10475 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BOQ54_12010 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7] D BOQ54_11625 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3] D BOQ54_10365 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11] D BOQ54_07130 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16] D BOQ54_08755 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9] D BOQ54_05495 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21] D BOQ54_16510 phenylalanine--tRNA ligase subunit alpha K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] D BOQ54_16505 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] D BOQ54_09915 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BOQ54_00895 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2] D BOQ54_08690 Ala-tRNA(Pro) hydrolase K07050 AARSD1; misacylated tRNA(Ala) deacylase [EC:3.1.1.-] D BOQ54_10680 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D BOQ54_00965 tRNA (guanosine(46)-N7)-methyltransferase TrmB K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] D BOQ54_16035 tRNA pseudouridine(38-40) synthase TruA K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] D BOQ54_15945 tRNA pseudouridine(55) synthase TruB K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25] D BOQ54_09925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BOQ54_06010 threonylcarbamoyl-AMP synthase K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] D BOQ54_12475 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75] D BOQ54_00760 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-] D BOQ54_00755 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D BOQ54_15705 hypothetical protein K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] D BOQ54_01375 ribonuclease P protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5] D BOQ54_12715 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D BOQ54_16780 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56] D BOQ54_14335 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D BOQ54_10480 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5] D BOQ54_02200 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58] D BOQ54_00525 lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6] D BOQ54_05920 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] D BOQ54_05930 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14] D BOQ54_04410 tRNA glutamyl-Q(34) synthetase GluQRS K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] D BOQ54_01630 DNA-binding protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D BOQ54_14145 hypothetical protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-] D BOQ54_05350 tRNA-specific adenosine deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] D BOQ54_06855 tRNA dihydrouridine(20/20a) synthase DusA K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-] D BOQ54_09430 tRNA dihydrouridine synthase DusB K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-] D BOQ54_00930 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3] D BOQ54_03905 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase MtaB K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5] D BOQ54_11995 RNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-] D BOQ54_10315 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D BOQ54_03940 tRNA (guanosine(37)-N1)-methyltransferase TrmD K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] D BOQ54_13265 tRNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207] D BOQ54_02335 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D BOQ54_15635 tRNA 2-thiouridine(34) synthase MnmA K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13] D BOQ54_07275 preprotein translocase subunit TatB K04085 tusA; tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-] D BOQ54_09960 Fe-S cluster assembly scaffold SufA K13628 iscA; iron-sulfur cluster assembly protein D BOQ54_06135 folate-binding protein YgfZ K06980 ygfZ; tRNA-modifying protein YgfZ D BOQ54_08835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17] D BOQ54_13730 7-cyano-7-deazaguanine synthase QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20] D BOQ54_09370 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] D BOQ54_16635 tRNA epoxyqueuosine(34) reductase QueG K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6] D BOQ54_08840 tRNA guanosine(34) transglycosylase Tgt K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29] D BOQ54_13625 tRNA lysidine(34) synthetase TilS K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19] D BOQ54_00910 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB D BOQ54_02070 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234] D BOQ54_07560 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1] D BOQ54_15935 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] C 03012 Translation factors [BR:cdq03012] D BOQ54_15955 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D BOQ54_16545 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D BOQ54_07660 glycosyl transferase family 1 K06158 ABCF3; ATP-binding cassette, subfamily F, member 3 D BOQ54_09205 translation elongation factor Ts K02357 tsf; elongation factor Ts D BOQ54_11450 translation elongation factor Tu K02358 tuf; elongation factor Tu D BOQ54_11525 translation elongation factor Tu K02358 tuf; elongation factor Tu D BOQ54_13040 elongation factor G K02355 fusA; elongation factor G D BOQ54_11455 translation elongation factor G K02355 fusA; elongation factor G D BOQ54_02720 peptide chain release factor 1 K02835 prfA; peptide chain release factor 1 D BOQ54_09215 ribosome recycling factor K02838 frr; ribosome recycling factor D BOQ54_02715 protein-(glutamine-N5) methyltransferase, release factor-specific K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297] D BOQ54_13755 aminoacyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] D BOQ54_07170 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D BOQ54_11575 translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1 D BOQ54_15790 elongation factor P K02356 efp; elongation factor P D BOQ54_15795 EF-P lysine aminoacylase GenX K04568 epmA; elongation factor P--(R)-beta-lysine ligase [EC:6.3.1.-] D BOQ54_09895 peptide chain release factor 2 K02836 prfB; peptide chain release factor 2 D BOQ54_00365 peptide chain release factor 3 K02837 prfC; peptide chain release factor 3 D BOQ54_10820 aminoacyl-tRNA hydrolase K15034 yaeJ; ribosome-associated protein C 03110 Chaperones and folding catalysts [BR:cdq03110] D BOQ54_10690 ATP-dependent Clp protease ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA D BOQ54_02705 ATP-dependent chaperone ClpB K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB D BOQ54_09025 ATP-dependent protease ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX D BOQ54_00885 HslU--HslV peptidase ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU D BOQ54_16680 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BOQ54_05470 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_11820 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_16685 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D BOQ54_12735 molecular chaperone DjlA K05801 djlA; DnaJ like chaperone protein D BOQ54_02415 Hsp33 family molecular chaperone K04083 hslO; molecular chaperone Hsp33 D BOQ54_16735 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D BOQ54_17220 hypothetical protein K13993 HSP20; HSP20 family protein D BOQ54_05020 molecular chaperone Hsp20 K13993 HSP20; HSP20 family protein D BOQ54_14090 molecular chaperone K04080 ibpA; molecular chaperone IbpA D BOQ54_02530 RNA-binding protein K04762 hslR; ribosome-associated heat shock protein Hsp15 D BOQ54_05465 co-chaperone GroES K04078 groES; chaperonin GroES D BOQ54_11815 co-chaperone GroES K04078 groES; chaperonin GroES D BOQ54_12485 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BOQ54_06665 serine protease K04771 degP; serine protease Do [EC:3.4.21.107] D BOQ54_13620 cell division protein FtsH K03798 ftsH; cell division protease FtsH [EC:3.4.24.-] D BOQ54_05685 F0F1 ATP synthase subunit A K02108 ATPF0A; F-type H+-transporting ATPase subunit a D BOQ54_00810 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BOQ54_06995 hypothetical protein K09796 pccA; periplasmic copper chaperone A D BOQ54_09320 peptidylprolyl isomerase K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8] D BOQ54_00635 peptidylprolyl isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] D BOQ54_00265 thioredoxin K03671 TXN; thioredoxin D BOQ54_01625 thioredoxin K05838 ybbN; putative thioredoxin D BOQ54_00600 glutaredoxin 3 K03676 grxC; glutaredoxin 3 D BOQ54_04355 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D BOQ54_02315 thiol:disulfide interchange protein K02199 ccmG; cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE C 04131 Membrane trafficking [BR:cdq04131] D BOQ54_10530 nucleoside-diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6] D BOQ54_13835 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BOQ54_16720 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] D BOQ54_14045 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BOQ54_02150 MFS transporter K06902 UMF1; MFS transporter, UMF1 family C 04121 Ubiquitin system C 03051 Proteasome C 03032 DNA replication proteins [BR:cdq03032] D BOQ54_05640 ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4] D BOQ54_09035 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D BOQ54_08165 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D BOQ54_00980 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D BOQ54_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D BOQ54_07955 replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3] D BOQ54_12975 DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101] D BOQ54_17795 hypothetical protein K18996 repC; replication initiation protein RepC D BOQ54_10305 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BOQ54_09195 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BOQ54_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BOQ54_07645 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BOQ54_00735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BOQ54_10055 XRE family transcriptional regulator K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BOQ54_00805 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BOQ54_16145 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BOQ54_05815 ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4] D BOQ54_00355 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BOQ54_12610 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BOQ54_08795 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D BOQ54_00025 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D BOQ54_08020 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BOQ54_09980 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BOQ54_10235 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D BOQ54_02940 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] C 03036 Chromosome and associated proteins [BR:cdq03036] D BOQ54_08005 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] D BOQ54_09035 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D BOQ54_08165 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D BOQ54_00980 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D BOQ54_00005 chromosomal replication initiation protein DnaA K02313 dnaA; chromosomal replication initiator protein D BOQ54_08920 DNA-binding protein K11940 hspQ; heat shock protein HspQ D BOQ54_15645 transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BOQ54_09455 RNA chaperone Hfq K03666 hfq; host factor-I protein D BOQ54_07900 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_01865 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_00130 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_12090 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_04240 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_05675 chromosome segregation protein SMC K03529 smc; chromosome segregation protein D BOQ54_10395 segregation/condensation protein A K05896 scpA; segregation and condensation protein A D BOQ54_17820 segregation and condensation protein B K06024 scpB; segregation and condensation protein B D BOQ54_10390 SMC-Scp complex subunit ScpB K06024 scpB; segregation and condensation protein B D BOQ54_12640 cell division protein FtsA K03590 ftsA; cell division protein FtsA D BOQ54_02800 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BOQ54_12695 penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4] D BOQ54_01590 cell division protein FtsK K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family D BOQ54_12700 hypothetical protein K03586 ftsL; cell division protein FtsL D BOQ54_12645 peptide transporter K03589 ftsQ; cell division protein FtsQ D BOQ54_12670 cell division protein FtsW K03588 ftsW; cell division protein FtsW D BOQ54_02805 ABC transporter permease K09811 ftsX; cell division transport system permease protein D BOQ54_12635 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BOQ54_13820 cell division protein ZapA K09888 zapA; cell division protein ZapA D BOQ54_01970 cell division protein ZapE K06916 zapE; cell division protein ZapE D BOQ54_09885 N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BOQ54_03025 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_01770 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_17805 plasmid partitioning protein RepA K03496 parA; chromosome partitioning protein D BOQ54_04515 hypothetical protein K03496 parA; chromosome partitioning protein D BOQ54_00745 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D BOQ54_03080 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D BOQ54_03240 hypothetical protein K03496 parA; chromosome partitioning protein D BOQ54_17800 plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_04600 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_00740 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_03120 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_08020 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BOQ54_09980 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BOQ54_00755 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme D BOQ54_00750 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D BOQ54_10315 methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74] D BOQ54_01930 recombinase XerC K03733 xerC; integrase/recombinase XerC D BOQ54_02690 site-specific tyrosine recombinase XerD K04763 xerD; integrase/recombinase XerD D BOQ54_06920 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning D BOQ54_01385 YihA family ribosome biogenesis GTP-binding protein K03978 engB; GTP-binding protein C 03400 DNA repair and recombination proteins [BR:cdq03400] D BOQ54_05035 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D BOQ54_18220 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D BOQ54_05660 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] D BOQ54_16620 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D BOQ54_06150 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BOQ54_00625 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BOQ54_11720 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D BOQ54_00505 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D BOQ54_03850 bifunctional transcriptional activator/DNA repair enzyme protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BOQ54_16675 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BOQ54_16725 alkylated DNA repair dioxygenase K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] D BOQ54_07525 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D BOQ54_05865 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] D BOQ54_04405 Fe-S cluster assembly protein HesB K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] D BOQ54_06130 DNA-3-methyladenine glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] D BOQ54_16795 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] D BOQ54_01580 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D BOQ54_08780 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D BOQ54_13230 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D BOQ54_11180 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D BOQ54_12610 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D BOQ54_00355 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] D BOQ54_10310 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A D BOQ54_13105 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B D BOQ54_13720 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C D BOQ54_12570 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BOQ54_03300 hypothetical protein K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] D BOQ54_11475 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] D BOQ54_11470 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] D BOQ54_11320 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] D BOQ54_07540 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] D BOQ54_09805 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] D BOQ54_14455 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D BOQ54_16665 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS D BOQ54_05370 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D BOQ54_05525 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] D BOQ54_06090 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D BOQ54_09195 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] D BOQ54_00010 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] D BOQ54_07645 DNA polymerase III subunit chi K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7] D BOQ54_00735 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] D BOQ54_10055 XRE family transcriptional regulator K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] D BOQ54_00805 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] D BOQ54_16145 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D BOQ54_10305 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BOQ54_12015 recombinase RecA K03553 recA; recombination protein RecA D BOQ54_13785 Holliday junction DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA D BOQ54_13780 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] D BOQ54_13790 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D BOQ54_01925 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D BOQ54_07945 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms D BOQ54_00015 DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF D BOQ54_09795 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] D BOQ54_08015 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) D BOQ54_16155 recombination protein RecR K06187 recR; recombination protein RecR D BOQ54_12620 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D BOQ54_00260 double-strand break repair helicase AddA K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] D BOQ54_00255 double-strand break repair protein AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D BOQ54_11145 subtype I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D BOQ54_08635 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase D BOQ54_10255 Ku protein K10979 ku; DNA end-binding protein Ku D BOQ54_10250 ATP-dependent DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D BOQ54_08795 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] D BOQ54_00025 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] D BOQ54_10235 DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D BOQ54_02940 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] D BOQ54_09035 DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta D BOQ54_15645 transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BOQ54_08165 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha D BOQ54_00980 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta D BOQ54_11690 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] D BOQ54_10650 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] D BOQ54_09285 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D BOQ54_15125 hypothetical protein K14160 imuA; protein ImuA D BOQ54_15130 nucleotidyltransferase K14161 imuB; protein ImuB D BOQ54_15135 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D BOQ54_15875 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D BOQ54_09745 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] C 03029 Mitochondrial biogenesis [BR:cdq03029] D BOQ54_15955 translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2 D BOQ54_16545 translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3 D BOQ54_09205 translation elongation factor Ts K02357 tsf; elongation factor Ts D BOQ54_11450 translation elongation factor Tu K02358 tuf; elongation factor Tu D BOQ54_11525 translation elongation factor Tu K02358 tuf; elongation factor Tu D BOQ54_13040 elongation factor G K02355 fusA; elongation factor G D BOQ54_11455 translation elongation factor G K02355 fusA; elongation factor G D BOQ54_08145 hypothetical protein K17662 CBP3; cytochrome b pre-mRNA-processing protein 3 D BOQ54_02525 helicase K17675 SUPV3L1; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:5.6.2.6] D BOQ54_08010 GTPase Era K03595 era; GTPase D BOQ54_09915 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1] D BOQ54_00725 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4] D BOQ54_10475 aspartate--tRNA ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12] D BOQ54_10410 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19] D BOQ54_05085 glutamyl-tRNA amidotransferase K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D BOQ54_10575 gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] D BOQ54_10560 gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7] D BOQ54_10580 asparaginyl/glutamyl-tRNA amidotransferase subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] D BOQ54_10305 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D BOQ54_09240 outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D BOQ54_16680 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BOQ54_16735 nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE D BOQ54_05470 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_11820 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_05465 co-chaperone GroES K04078 groES; chaperonin GroES D BOQ54_11815 co-chaperone GroES K04078 groES; chaperonin GroES D BOQ54_16685 molecular chaperone DnaJ K03686 dnaJ; molecular chaperone DnaJ D BOQ54_09925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] D BOQ54_04355 monothiol glutaredoxin, Grx4 family K07390 grxD; monothiol glutaredoxin D BOQ54_13215 methyltransferase K18164 NDUFAF7; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 7 D BOQ54_06920 sodium:proton antiporter K03593 mrp; ATP-binding protein involved in chromosome partitioning D BOQ54_01230 FAD-dependent oxidoreductase K18166 FOXRED1; FAD-dependent oxidoreductase domain-containing protein 1 D BOQ54_05750 protoheme IX farnesyltransferase K02257 COX10; heme o synthase [EC:2.5.1.141] D BOQ54_05760 cytochrome c oxidase assembly protein K02258 COX11; cytochrome c oxidase assembly protein subunit 11 D BOQ54_08270 heme A synthase K02259 COX15; heme a synthase [EC:1.17.99.9] D BOQ54_01380 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D BOQ54_05775 surfeit 1 K14998 SURF1; surfeit locus 1 family protein D BOQ54_07000 SCO family protein K07152 SCO1; protein SCO1 B B 09183 Protein families: signaling and cellular processes C 02000 Transporters [BR:cdq02000] D BOQ54_03965 ABC transporter permease K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6] D BOQ54_02665 cyclic beta-1,2-glucan ABC transporter K24819 ndvA; ATP-binding cassette, subfamily B, beta-glucan exporter [EC:7.5.2.3] D BOQ54_07155 metal ABC transporter permease K24821 atm1; ATP-binding cassette, subfamily B, heavy metal transporter D BOQ54_17045 ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D BOQ54_13880 ABC transporter K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D BOQ54_00035 multidrug ABC transporter ATP-binding protein K06147 ABCB-BAC; ATP-binding cassette, subfamily B, bacterial D BOQ54_12810 protease/lipase ABC transporter permease/ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_02340 type I secretion protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_18400 ABC transporter ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_18835 thiol reductant ABC exporter subunit CydC K16012 cydC; ATP-binding cassette, subfamily C, bacterial CydC D BOQ54_18830 thiol reductant ABC exporter subunit CydD K16013 cydD; ATP-binding cassette, subfamily C, bacterial CydD D BOQ54_05475 ABC transporter K02471 bacA; vitamin B12/bleomycin/antimicrobial peptide transport system ATP-binding/permease protein D BOQ54_12860 elongation factor 3 K15738 uup; ABC transport system ATP-binding/permease protein D BOQ54_08485 multidrug ABC transporter ATP-binding protein K02021 ABC.MR; putative ABC transport system ATP-binding protein D BOQ54_04270 molybdate ABC transporter substrate-binding protein K02020 modA; molybdate transport system substrate-binding protein D BOQ54_04265 molybdenum ABC transporter permease subunit K02018 modB; molybdate transport system permease protein D BOQ54_04260 molybdenum ABC transporter ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5] D BOQ54_12295 sulfate transporter K05772 tupA; tungstate transport system substrate-binding protein D BOQ54_12285 ABC transporter permease K05773 tupB; tungstate transport system permease protein D BOQ54_12290 ABC transporter ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6] D BOQ54_07205 bicarbonate-binding protein K15576 nrtA; nitrate/nitrite transport system substrate-binding protein D BOQ54_07210 nitrate ABC transporter, permease protein K15577 nrtB; nitrate/nitrite transport system permease protein D BOQ54_07215 nitrate ABC transporter ATP-binding protein K15578 nrtC; nitrate/nitrite transport system ATP-binding protein [EC:7.3.2.4] D BOQ54_12425 ABC transporter substrate-binding protein K15553 ssuA; sulfonate transport system substrate-binding protein D BOQ54_12430 ABC transporter permease K15554 ssuC; sulfonate transport system permease protein D BOQ54_12435 mannosyltransferase K15555 ssuB; sulfonate transport system ATP-binding protein [EC:7.6.2.14] D BOQ54_03600 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_03695 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_07720 iron ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_17440 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_05110 ABC transporter substrate-binding protein K02012 afuA; iron(III) transport system substrate-binding protein D BOQ54_03595 ABC transporter permease K02011 afuB; iron(III) transport system permease protein D BOQ54_03700 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D BOQ54_07715 iron ABC transporter permease K02011 afuB; iron(III) transport system permease protein D BOQ54_17435 ABC transporter permease K02011 afuB; iron(III) transport system permease protein D BOQ54_03590 spermidine/putrescine ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BOQ54_03705 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BOQ54_17430 ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BOQ54_10385 iron ABC transporter ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7] D BOQ54_14385 spermidine/putrescine ABC transporter substrate-binding protein PotF K11073 potF; putrescine transport system substrate-binding protein D BOQ54_07700 putrescine ABC transporter permease PotI K11074 potI; putrescine transport system permease protein D BOQ54_07695 putrescine/spermidine ABC transporter permease K11075 potH; putrescine transport system permease protein D BOQ54_07690 ABC transporter ATP-binding protein K11076 potG; putrescine transport system ATP-binding protein [EC:7.6.2.16] D BOQ54_17840 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_05155 spermidine/putrescine ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_10080 spermidine/putrescine ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_19175 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_17200 ABC transporter substrate-binding protein K02055 ABC.SP.S; putative spermidine/putrescine transport system substrate-binding protein D BOQ54_17825 spermidine/putrescine ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_05140 polyamine ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_10100 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_19165 ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_17210 spermidine/putrescine ABC transporter permease K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein D BOQ54_17830 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D BOQ54_05145 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D BOQ54_10105 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D BOQ54_19170 ABC transporter permease K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein D BOQ54_17835 ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D BOQ54_05150 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D BOQ54_10110 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D BOQ54_19180 Fe3+/spermidine/putrescine ABC transporter ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein D BOQ54_17505 ABC transporter substrate-binding protein K02002 proX; glycine betaine/proline transport system substrate-binding protein D BOQ54_17510 ABC transporter permease K02001 proW; glycine betaine/proline transport system permease protein D BOQ54_17515 glycine betaine/L-proline ABC transporter ATP-binding protein K02000 proV; glycine betaine/proline transport system ATP-binding protein [EC:7.6.2.9] D BOQ54_07370 ABC transporter substrate-binding protein K05845 opuC; osmoprotectant transport system substrate-binding protein D BOQ54_07355 ABC transporter K05846 opuBD; osmoprotectant transport system permease protein D BOQ54_07365 ABC transporter permease K05846 opuBD; osmoprotectant transport system permease protein D BOQ54_07360 ABC transporter K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9] D BOQ54_01710 ABC transporter substrate-binding protein K05777 ynjB; putative thiamine transport system substrate-binding protein D BOQ54_01715 ABC transporter permease K05778 ynjC; putative thiamine transport system permease protein D BOQ54_01720 ABC transporter ATP-binding protein K05779 ynjD; putative thiamine transport system ATP-binding protein D BOQ54_04100 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D BOQ54_01870 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D BOQ54_13055 ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D BOQ54_17740 nitrate ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D BOQ54_18585 hypothetical protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D BOQ54_14605 nitrate ABC transporter substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D BOQ54_10800 ABC transporter permease K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein D BOQ54_04105 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D BOQ54_01880 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D BOQ54_17745 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D BOQ54_18590 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D BOQ54_14615 ABC transporter ATP-binding protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein D BOQ54_10795 ABC transporter permease K02050 ABC.SN.P; NitT/TauT family transport system permease protein D BOQ54_04095 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D BOQ54_01875 nitrate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D BOQ54_13050 nitrate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D BOQ54_17735 ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D BOQ54_18595 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D BOQ54_14610 nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D BOQ54_10790 sulfonate ABC transporter ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein D BOQ54_16280 sugar ABC transporter ATP-binding protein K10111 malK; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_17770 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_18280 glycerol-3-phosphate ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_09595 ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_14665 sugar ABC transporter ATP-binding protein K10112 msmX; multiple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_09580 sugar ABC transporter substrate-binding protein K17315 gtsA; glucose/mannose transport system substrate-binding protein D BOQ54_09590 sugar ABC transporter permease K17317 gtsC; glucose/mannose transport system permease protein D BOQ54_15290 ABC transporter ATP-binding protein K10191 lacK; lactose/L-arabinose transport system ATP-binding protein D BOQ54_10150 rhamnose ABC transporter substrate-binding protein K10559 rhaS; rhamnose transport system substrate-binding protein D BOQ54_10140 branched-chain amino acid ABC transporter permease K10560 rhaP; rhamnose transport system permease protein D BOQ54_10135 branched-chain amino acid ABC transporter permease K10561 rhaQ; rhamnose transport system permease protein D BOQ54_10145 D-xylose ABC transporter ATP-binding protein K10562 rhaT; rhamnose transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_08890 LacI family transcriptional regulator K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_18230 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_09825 ABC transporter K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_06810 ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_07465 sugar ABC transporter substrate-binding protein K10439 rbsB; ribose transport system substrate-binding protein D BOQ54_08895 ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_18240 ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_18245 ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_09820 ribose ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_06805 ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_07455 sugar ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_07470 sugar ABC transporter permease K10440 rbsC; ribose transport system permease protein D BOQ54_07450 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_08885 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_18235 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_09815 D-xylose ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_06800 ABC transporter ATP-binding protein K10441 rbsA; ribose transport system ATP-binding protein [EC:7.5.2.7] D BOQ54_17120 ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D BOQ54_13495 glycerol 3-phosphate ABC transporter K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D BOQ54_01250 sn-glycerol-3-phosphate ABC transporter substrate-binding protein K05813 ugpB; sn-glycerol 3-phosphate transport system substrate-binding protein D BOQ54_17125 ABC transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D BOQ54_13490 glycerol-3-phosphate transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D BOQ54_01255 glycerol-3-phosphate transporter permease K05814 ugpA; sn-glycerol 3-phosphate transport system permease protein D BOQ54_17130 ABC transporter permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D BOQ54_13485 ABC transporter permease K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D BOQ54_01260 glycerol-3-phosphate transporter K05815 ugpE; sn-glycerol 3-phosphate transport system permease protein D BOQ54_17115 ABC transporter ATP-binding protein K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D BOQ54_13480 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC K05816 ugpC; sn-glycerol 3-phosphate transport system ATP-binding protein [EC:7.6.2.10] D BOQ54_16305 ABC transporter ATP-binding protein K25676 yesO; pectin-derived oligosaccharide transport system substrate-binding protein D BOQ54_17050 sugar ABC transporter substrate-binding protein K25676 yesO; pectin-derived oligosaccharide transport system substrate-binding protein D BOQ54_16300 ABC transporter permease K25677 yesP; pectin-derived oligosaccharide transport system permease protein D BOQ54_16295 sugar ABC transporter permease K25678 yesQ; pectin-derived oligosaccharide transport system permease protein D BOQ54_16490 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D BOQ54_08975 BMP family ABC transporter substrate-binding protein K07335 bmpA; basic membrane protein A and related proteins D BOQ54_16480 sugar ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D BOQ54_08965 sugar ABC transporter permease K23535 nupB; general nucleoside transport system permease protein D BOQ54_16475 sugar ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D BOQ54_08970 ABC transporter permease K23536 nupC; general nucleoside transport system permease protein D BOQ54_16485 heme ABC transporter ATP-binding protein K23537 nupA; general nucleoside transport system ATP-binding protein D BOQ54_08960 ABC transporter K23537 nupA; general nucleoside transport system ATP-binding protein D BOQ54_12165 mammalian cell entry protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein D BOQ54_12175 ABC transporter permease K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein D BOQ54_12170 ABC transporter ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein D BOQ54_12160 ABC transporter K18480 linN; cholesterol transport system auxiliary component D BOQ54_17785 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D BOQ54_18265 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D BOQ54_18645 hypothetical protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D BOQ54_18650 carbohydrate ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D BOQ54_14660 ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D BOQ54_15255 sugar ABC transporter K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D BOQ54_03520 sugar ABC transporter substrate-binding protein K02027 ABC.MS.S; multiple sugar transport system substrate-binding protein D BOQ54_03515 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D BOQ54_17780 ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D BOQ54_18270 ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D BOQ54_18665 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D BOQ54_14655 ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D BOQ54_15265 sugar ABC transporter permease K02025 ABC.MS.P; multiple sugar transport system permease protein D BOQ54_03510 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D BOQ54_17775 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D BOQ54_18275 ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D BOQ54_18670 ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D BOQ54_14650 sugar ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D BOQ54_15270 ABC transporter permease K02026 ABC.MS.P1; multiple sugar transport system permease protein D BOQ54_18505 LacI family transcriptional regulator K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D BOQ54_06405 sugar ABC transporter substrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D BOQ54_07460 sugar ABC transporter substrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein D BOQ54_18515 sugar ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein D BOQ54_18520 sugar ABC transporter permease K02057 ABC.SS.P; simple sugar transport system permease protein D BOQ54_06400 ATPase K02057 ABC.SS.P; simple sugar transport system permease protein D BOQ54_18510 lipase K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_06395 ABC transporter ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_07475 sugar ABC transporter ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-] D BOQ54_02370 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BOQ54_10950 phosphate ABC transporter substrate-binding protein K02040 pstS; phosphate transport system substrate-binding protein D BOQ54_02375 phosphate ABC transporter permease subunit PstC K02037 pstC; phosphate transport system permease protein D BOQ54_02380 phosphate ABC transporter, permease protein PstA K02038 pstA; phosphate transport system permease protein D BOQ54_02385 phosphate ABC transporter ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1] D BOQ54_10900 phosphonate ABC transporter substrate-binding protein K02044 phnD; phosphonate transport system substrate-binding protein D BOQ54_10890 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D BOQ54_10895 phosphonate ABC transporter, permease protein PhnE K02042 phnE; phosphonate transport system permease protein D BOQ54_10905 phosphonate ABC transporter ATP-binding protein K02041 phnC; phosphonate transport system ATP-binding protein [EC:7.3.2.2] D BOQ54_11080 amino acid ABC transporter substrate-binding protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D BOQ54_07390 amino acid ABC transporter substrate-bindnig protein K09969 aapJ; general L-amino acid transport system substrate-binding protein D BOQ54_11075 amino acid ABC transporter permease K09970 aapQ; general L-amino acid transport system permease protein D BOQ54_11070 amino acid ABC transporter permease K09971 aapM; general L-amino acid transport system permease protein D BOQ54_11065 ABC transporter ATP-binding protein K09972 aapP; general L-amino acid transport system ATP-binding protein [EC:7.4.2.1] D BOQ54_13385 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_13525 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_04205 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_18095 ABC transporter permease K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_05215 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_14185 ABC transporter permease K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_15465 amino acid-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_00430 ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_11935 branched chain amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_01685 amino acid ABC transporter substrate-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein D BOQ54_13390 branched-chain amino acid ABC transporter permease LivH K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_13520 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_04210 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_18100 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_05205 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_14195 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_15460 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_00435 ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_11910 branched-chain amino acid ABC transporter permease LivH K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_01680 branched-chain amino acid ABC transporter permease K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_08065 hypothetical protein K01997 livH; branched-chain amino acid transport system permease protein D BOQ54_15455 branched-chain amino acid ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_04215 ABC transporter K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_01675 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_13380 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_13515 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_18105 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_05210 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_14190 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_11915 branched-chain amino acid ABC transporter permease K01998 livM; branched-chain amino acid transport system permease protein D BOQ54_01670 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_13510 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_18085 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_05200 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_14200 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_11920 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_00440 ABC transporter ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein D BOQ54_00445 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_01665 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_13505 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_18090 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_05220 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_14180 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_15450 livF; branched-chain amino acid ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_11925 ABC transporter ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein D BOQ54_15760 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D BOQ54_15780 metal ABC transporter substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein D BOQ54_15775 DL-methionine transporter permease subunit K02072 metI; D-methionine transport system permease protein D BOQ54_15770 methionine ABC transporter ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein D BOQ54_15140 urea ABC transporter substrate-binding protein K11959 urtA; urea transport system substrate-binding protein D BOQ54_15145 urea ABC transporter permease subunit UrtB K11960 urtB; urea transport system permease protein D BOQ54_15150 urea ABC transporter permease subunit UrtC K11961 urtC; urea transport system permease protein D BOQ54_15155 urea ABC transporter ATP-binding protein UrtD K11962 urtD; urea transport system ATP-binding protein D BOQ54_15160 urea ABC transporter ATP-binding subunit UrtE K11963 urtE; urea transport system ATP-binding protein D BOQ54_13370 ABC transporter permease K01989 K01989; putative tryptophan/tyrosine transport system substrate-binding protein D BOQ54_13365 ABC transporter permease K05832 K05832; putative tryptophan/tyrosine transport system permease protein D BOQ54_13360 ABC transporter ATP-binding protein K05833 K05833; putative tryptophan/tyrosine transport system ATP-binding protein D BOQ54_17545 ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D BOQ54_06915 amino acid ABC transporter K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D BOQ54_00530 ABC transporter substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein D BOQ54_06910 ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D BOQ54_17535 ectoine/hydroxyectoine ABC transporter permease subunit EhuD K02029 ABC.PA.P; polar amino acid transport system permease protein D BOQ54_17540 ectoine/hydroxyectoine ABC transporter permease subunit EhuC K02029 ABC.PA.P; polar amino acid transport system permease protein D BOQ54_06905 ABC transporter permease K02029 ABC.PA.P; polar amino acid transport system permease protein D BOQ54_17530 ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA K02028 ABC.PA.A; polar amino acid transport system ATP-binding protein [EC:7.4.2.1] D BOQ54_16260 ABC transporter substrate-binding protein K15580 oppA; oligopeptide transport system substrate-binding protein D BOQ54_16265 ABC transporter K15581 oppB; oligopeptide transport system permease protein D BOQ54_16270 peptide ABC transporter permease K15582 oppC; oligopeptide transport system permease protein D BOQ54_16275 microcin ABC transporter ATP-binding protein K10823 oppF; oligopeptide transport system ATP-binding protein D BOQ54_17400 ABC transporter substrate-binding protein K12368 dppA; dipeptide transport system substrate-binding protein D BOQ54_15610 glutathione ABC transporter substrate-binding protein GsiB K13889 gsiB; glutathione transport system substrate-binding protein D BOQ54_15605 glutathione ABC transporter permease GsiC K13890 gsiC; glutathione transport system permease protein D BOQ54_15600 glutathione ABC transporter permease GsiD K13891 gsiD; glutathione transport system permease protein D BOQ54_15615 glutathione ABC transporter ATP-binding protein GsiA K13892 gsiA; glutathione transport system ATP-binding protein D BOQ54_17685 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_16955 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_08455 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_08530 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_17630 peptide ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_17920 peptide ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_14820 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_06335 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_11000 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_02970 peptide ABC transporter K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_01125 ABC transporter substrate-binding protein K02035 ABC.PE.S; peptide/nickel transport system substrate-binding protein D BOQ54_06330 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_16960 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_08450 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_08525 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_17625 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_17680 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_17925 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_14825 peptide ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_10995 peptide ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_02965 peptide ABC transporter K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_01130 ABC transporter permease K02033 ABC.PE.P; peptide/nickel transport system permease protein D BOQ54_16965 DNA-directed RNA polymerase subunit alpha K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_08445 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_08520 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_17620 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_17675 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_17930 peptide ABC transporter K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_14830 D-ala-D-ala transporter subunit K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_06325 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_10990 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_02960 peptide ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_01135 ABC transporter permease K02034 ABC.PE.P1; peptide/nickel transport system permease protein D BOQ54_16970 ABC transporter K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_08460 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_17615 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_06320 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_01140 methionine ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_02955 dppD; dipeptide ABC transporter ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_08515 methionine ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_17665 dppD; dipeptide ABC transporter ATP-binding protein DppD K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_17935 ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_14835 peptide ABC transporter ATP-binding protein K02031 ddpD; peptide/nickel transport system ATP-binding protein D BOQ54_02950 peptide ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D BOQ54_06315 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D BOQ54_14840 ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D BOQ54_17670 dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein K02032 ddpF; peptide/nickel transport system ATP-binding protein D BOQ54_16105 hypothetical protein K13893 yejA; microcin C transport system substrate-binding protein D BOQ54_16095 microcin ABC transporter permease K13894 yejB; microcin C transport system permease protein D BOQ54_16090 peptide ABC transporter permease K13895 yejE; microcin C transport system permease protein D BOQ54_16085 microcin ABC transporter ATP-binding protein K13896 yejF; microcin C transport system ATP-binding protein D BOQ54_19225 hypothetical protein K23227 fhuD; ferric hydroxamate transport system substrate-binding protein D BOQ54_19220 Fe3+-hydroxamate ABC transporter permease FhuB K23228 fhuB; ferric hydroxamate transport system permease protein D BOQ54_17415 iron-hydroxamate transporter ATP-binding subunit K10829 fhuC; ferric hydroxamate transport system ATP-binding protein [EC:7.2.2.16] D BOQ54_18915 hemin ABC transporter substrate-binding protein K25132 hmuT; heme transport system substrate-binding protein D BOQ54_18910 iron ABC transporter K25133 hmuU; heme transport system permease protein D BOQ54_18905 iron ABC transporter K10834 hmuV; heme transport system ATP-binding protein [EC:7.6.2.5] D BOQ54_09500 iron siderophore ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D BOQ54_00285 Fe3+-hydroxamate ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D BOQ54_16995 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D BOQ54_09525 ABC transporter substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein D BOQ54_00295 ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D BOQ54_16990 iron-siderophore ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D BOQ54_09505 iron ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D BOQ54_09520 ABC transporter permease K02015 ABC.FEV.P; iron complex transport system permease protein D BOQ54_16985 ferrichrome ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D BOQ54_09510 ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D BOQ54_09515 histidinol phosphatase K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D BOQ54_00300 ABC transporter K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-] D BOQ54_03465 manganese transporter K11707 troA; manganese/zinc/iron transport system substrate-binding protein D BOQ54_03475 zinc ABC transporter permease K11708 troC; manganese/zinc/iron transport system permease protein D BOQ54_03480 zinc ABC transporter permease K11709 troD; manganese/zinc/iron transport system permease protein D BOQ54_03470 manganese ABC transporter ATP-binding protein K11710 troB; manganese/zinc/iron transport system ATP- binding protein [EC:7.2.2.5] D BOQ54_08045 biotin transporter BioY K03523 bioY; biotin transport system substrate-specific component D BOQ54_14310 ABC transporter substrate-binding protein K02077 ABC.ZM.S; zinc/manganese transport system substrate-binding protein D BOQ54_14305 zinc ABC transporter permease K02075 ABC.ZM.P; zinc/manganese transport system permease protein D BOQ54_14300 ABC transporter K02074 ABC.ZM.A; zinc/manganese transport system ATP-binding protein D BOQ54_18760 hypothetical protein K09690 wzm; homopolymeric O-antigen transport system permease protein D BOQ54_15545 hypothetical protein K09690 wzm; homopolymeric O-antigen transport system permease protein D BOQ54_15540 sugar ABC transporter K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D BOQ54_18765 hypothetical protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14] D BOQ54_07635 LPS export ABC transporter permease LptF K07091 lptF; lipopolysaccharide export system permease protein D BOQ54_07630 LPS export ABC transporter permease LptG K11720 lptG; lipopolysaccharide export system permease protein D BOQ54_14350 LPS export ABC transporter ATP-binding protein K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5] D BOQ54_17370 hypothetical protein K19341 nosY; Cu-processing system permease protein D BOQ54_17365 ABC transporter ATP-binding protein K19340 nosF; Cu-processing system ATP-binding protein D BOQ54_18145 hypothetical protein K25180 ybhR; drug efflux transport system permease protein D BOQ54_18140 hypothetical protein K25181 ybhS; drug efflux transport system permease protein D BOQ54_18135 multidrug ABC transporter ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein D BOQ54_18130 secretion protein HlyD K25183 ybhG; membrane fusion protein YbhG D BOQ54_01765 ABC transporter K09808 lolC_E; lipoprotein-releasing system permease protein D BOQ54_09150 multidrug ABC transporter substrate-binding protein K09808 lolC_E; lipoprotein-releasing system permease protein D BOQ54_01760 ABC transporter ATP-binding protein K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D BOQ54_09155 ABC transporter K09810 lolD; lipoprotein-releasing system ATP-binding protein [EC:7.6.2.-] D BOQ54_02310 heme exporter protein CcmD K02196 ccmD; heme exporter protein D D BOQ54_02305 heme transporter HemC K02195 ccmC; heme exporter protein C D BOQ54_02300 heme exporter protein CcmB K02194 ccmB; heme exporter protein B D BOQ54_02295 heme ABC exporter, ATP-binding protein CcmA K02193 ccmA; heme exporter protein A [EC:7.6.2.5] D BOQ54_02805 ABC transporter permease K09811 ftsX; cell division transport system permease protein D BOQ54_02800 cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein D BOQ54_17330 sugar ABC transporter permease K01992 ABC-2.P; ABC-2 type transport system permease protein D BOQ54_08705 hypothetical protein K01992 ABC-2.P; ABC-2 type transport system permease protein D BOQ54_17335 multidrug ABC transporter ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein D BOQ54_02180 glycosyl transferase family 1 K02004 ABC.CD.P; putative ABC transport system permease protein D BOQ54_02185 ABC transporter ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein D BOQ54_09935 Fe-S cluster assembly ATPase SufC K09013 sufC; Fe-S cluster assembly ATP-binding protein D BOQ54_07515 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D BOQ54_07250 MATE family efflux transporter K26939 norM; MATE family, multidrug efflux pump D BOQ54_05615 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D BOQ54_19215 MATE family efflux transporter K26937 dinF; MATE family, multidrug efflux pump D BOQ54_12185 hypothetical protein K05820 hcaT; MFS transporter, PPP family, 3-phenylpropionic acid transporter D BOQ54_07220 MFS transporter K02575 NRT2; MFS transporter, NNP family, nitrate/nitrite transporter D BOQ54_00060 AmpG family muropeptide MFS transporter K08218 ampG; MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG D BOQ54_15215 MFS transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D BOQ54_06950 hypothetical protein K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D BOQ54_00480 Bcr/CflA family drug resistance efflux transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D BOQ54_01060 multidrug transporter K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein D BOQ54_17480 MFS transporter K19577 ydhP; MFS transporter, DHA1 family, inner membrane transport protein D BOQ54_03415 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D BOQ54_17345 MFS transporter K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D BOQ54_00230 hypothetical protein K08223 fsr; MFS transporter, FSR family, fosmidomycin resistance protein D BOQ54_02150 MFS transporter K06902 UMF1; MFS transporter, UMF1 family D BOQ54_03650 phosphoenolpyruvate--protein phosphotransferase K08483 ptsI; phosphoenolpyruvate-protein phosphotransferase (PTS system enzyme I) [EC:2.7.3.9] D BOQ54_02725 phosphoenolpyruvate--protein phosphotransferase K08484 ptsP; phosphotransferase system, enzyme I, PtsP [EC:2.7.3.9] D BOQ54_01015 serine kinase K02784 ptsH; phosphocarrier protein HPr D BOQ54_03645 PTS cellobiose transporter subunit IIB K02781 srlB; glucitol/sorbitol PTS system EIIA component [EC:2.7.1.198] D BOQ54_03640 PTS sorbitol transporter subunit IIB K02782 srlE; glucitol/sorbitol PTS system EIIB component [EC:2.7.1.198] D BOQ54_03635 PTS sorbitol transporter subunit IIC K02783 srlA; glucitol/sorbitol PTS system EIIC component D BOQ54_03660 PTS sugar transporter subunit IIA K02773 gatA; galactitol PTS system EIIA component [EC:2.7.1.200] D BOQ54_03655 PTS galactitol transporter subunit IIB K02774 gatB; galactitol PTS system EIIB component [EC:2.7.1.200] D BOQ54_03665 PTS sugar transporter subunit IIC K02775 gatC; galactitol PTS system EIIC component D BOQ54_01020 PTS fructose transporter subunit IIA K02793 manXa; mannose PTS system EIIA component [EC:2.7.1.191] D BOQ54_14365 PTS IIA-like nitrogen-regulatory protein PtsN K02806 ptsN; nitrogen PTS system EIIA component [EC:2.7.1.-] D BOQ54_07670 aquaporin K06188 aqpZ; aquaporin Z D BOQ54_05950 ion transporter K10716 kch; voltage-gated potassium channel D BOQ54_01595 ammonium transporter K03320 amt; ammonium transporter, Amt family D BOQ54_13195 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_03860 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_12030 hypothetical protein K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_16630 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_12465 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_01975 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_18115 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_10005 glutathione S-transferase K00799 GST; glutathione S-transferase [EC:2.5.1.18] D BOQ54_15820 large-conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel D BOQ54_02660 hypothetical protein K05802 mscK; potassium-dependent mechanosensitive channel D BOQ54_13240 mechanosensitive ion channel protein MscS K22044 ybiO; moderate conductance mechanosensitive channel D BOQ54_13745 hypothetical protein K22044 ybiO; moderate conductance mechanosensitive channel D BOQ54_01650 magnesium transporter K06213 mgtE; magnesium transporter D BOQ54_08395 magnesium transporter K06213 mgtE; magnesium transporter D BOQ54_11060 hypothetical protein K22112 amiS; putative amide transporter protein D BOQ54_14975 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BOQ54_13875 hypothetical protein K02557 motB; chemotaxis protein MotB D BOQ54_15080 hypothetical protein K02557 motB; chemotaxis protein MotB D BOQ54_00080 TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD D BOQ54_13655 protein TolQ K03562 tolQ; biopolymer transport protein TolQ D BOQ54_13650 protein TolR K03560 tolR; biopolymer transport protein TolR D BOQ54_06030 magnesium transporter K03284 corA; magnesium transporter D BOQ54_14470 chromosome condensation protein CrcB K06199 crcB; fluoride exporter D BOQ54_14475 chromosome condensation protein CrcB K06199 crcB; fluoride exporter D BOQ54_02670 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D BOQ54_13590 hypothetical protein K16079 omp31; outer membrane immunogenic protein D BOQ54_03790 hypothetical protein K16079 omp31; outer membrane immunogenic protein D BOQ54_13200 hypothetical protein K16079 omp31; outer membrane immunogenic protein D BOQ54_13540 hypothetical protein K16079 omp31; outer membrane immunogenic protein D BOQ54_00215 hypothetical protein K16079 omp31; outer membrane immunogenic protein D BOQ54_15370 flagellar motor protein MotB K03286 TC.OOP; OmpA-OmpF porin, OOP family D BOQ54_11215 aromatic hydrocarbon degradation protein K06076 fadL; long-chain fatty acid transport protein D BOQ54_00290 hypothetical protein K16092 btuB; vitamin B12 transporter D BOQ54_18925 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein D BOQ54_08745 channel protein TolC K12340 tolC; outer membrane protein D BOQ54_08245 sugar transporter K01991 wza; polysaccharide biosynthesis/export protein D BOQ54_17300 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein D BOQ54_18170 hypothetical protein K01991 wza; polysaccharide biosynthesis/export protein D BOQ54_09240 outer membrane protein assembly factor BamA K07277 SAM50; outer membrane protein insertion porin family D BOQ54_12625 outer membrane protein assembly factor BamD K05807 bamD; outer membrane protein assembly factor BamD D BOQ54_13455 hypothetical protein K07278 tamA; translocation and assembly module TamA D BOQ54_13450 hypothetical protein K09800 tamB; translocation and assembly module TamB D BOQ54_06115 hypothetical protein K19233 btaF; ECM component-binding autotransporter adhesin D BOQ54_14345 hypothetical protein K09774 lptA; lipopolysaccharide export system protein LptA D BOQ54_14340 LPS export ABC transporter periplasmic protein LptC K11719 lptC; lipopolysaccharide export system protein LptC D BOQ54_07625 organic solvent tolerance protein K04744 lptD; LPS-assembly protein D BOQ54_00730 hypothetical protein K03643 lptE; LPS-assembly lipoprotein D BOQ54_00945 hypothetical protein K06189 corC; hemolysin (HlyC) family protein D BOQ54_14400 multidrug transporter AcrB K18303 mexK; multidrug efflux pump D BOQ54_03030 multidrug transporter AcrB K18138 acrB; multidrug efflux pump D BOQ54_14725 MFS transporter K18989 vexF; multidrug efflux pump D BOQ54_01400 QacE family quaternary ammonium compound efflux SMR transporter K03297 emrE; small multidrug resistance pump D BOQ54_05290 QacE family quaternary ammonium compound efflux SMR transporter K11741 sugE; quaternary ammonium compound-resistance protein SugE D BOQ54_13775 transporter K08978 TC.BAT1; bacterial/archaeal transporter family protein D BOQ54_01050 K+/H+ antiporter K11105 cvrA; potassium/hydrogen antiporter D BOQ54_19080 sodium:proton antiporter K03316 nhaP; Na+:H+ antiporter D BOQ54_05620 potassium transporter TrkA K11747 kefB; glutathione-regulated potassium-efflux system protein KefB D BOQ54_12100 potassium transporter TrkA K03455 KEA1_2_3; K+:H+ antiporter D BOQ54_13115 chromate transporter K07240 chrA; chromate transporter D BOQ54_08950 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family D BOQ54_18820 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family D BOQ54_03395 sodium-independent anion transporter K03321 TC.SULP; sulfate permease, SulP family D BOQ54_06250 hypothetical protein K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D BOQ54_16850 C4-dicarboxylate ABC transporter permease K11689 dctQ; C4-dicarboxylate transporter, DctQ subunit D BOQ54_13170 C4-dicarboxylate ABC transporter permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D BOQ54_05050 hypothetical protein K11690 dctM; C4-dicarboxylate transporter, DctM subunit D BOQ54_10930 C4-dicarboxylate ABC transporter K11690 dctM; C4-dicarboxylate transporter, DctM subunit D BOQ54_16855 permease K11690 dctM; C4-dicarboxylate transporter, DctM subunit D BOQ54_18555 hypothetical protein K21393 yiaN; TRAP-type transport system large permease protein D BOQ54_19095 L-dehydroascorbate transporter large permease subunit K21393 yiaN; TRAP-type transport system large permease protein D BOQ54_18550 hypothetical protein K21394 yiaM; TRAP-type transport system small permease protein D BOQ54_19100 TRAP transporter small permease protein K21394 yiaM; TRAP-type transport system small permease protein D BOQ54_07860 C4-dicarboxylate ABC transporter permease K21394 yiaM; TRAP-type transport system small permease protein D BOQ54_00685 TRAP transporter small permease protein K21394 yiaM; TRAP-type transport system small permease protein D BOQ54_10940 ABC transporter substrate-binding protein K21395 yiaO; TRAP-type transport system periplasmic protein D BOQ54_19090 ABC transporter substrate-binding protein K21395 yiaO; TRAP-type transport system periplasmic protein D BOQ54_00690 TRAP dicarboxylate transporter subunit DctP K21395 yiaO; TRAP-type transport system periplasmic protein D BOQ54_03575 sodium:phosphate symporter K03324 yjbB; phosphate:Na+ symporter D BOQ54_17095 arsenical-resistance protein K03325 ACR3; arsenite transporter D BOQ54_00555 monovalent cation/H+ antiporter subunit A K05559 phaA; multicomponent K+:H+ antiporter subunit A D BOQ54_00560 Na+/H+ antiporter subunit C K05560 phaC; multicomponent K+:H+ antiporter subunit C D BOQ54_00565 monovalent cation/H+ antiporter subunit D K05561 phaD; multicomponent K+:H+ antiporter subunit D D BOQ54_00570 Na+/H+ antiporter subunit E K05562 phaE; multicomponent K+:H+ antiporter subunit E D BOQ54_00575 K+/H+ antiporter subunit F K05563 phaF; multicomponent K+:H+ antiporter subunit F D BOQ54_00580 Na+/H+ antiporter subunit G K05564 phaG; multicomponent K+:H+ antiporter subunit G D BOQ54_08660 murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D BOQ54_00890 murein biosynthesis integral membrane protein MurJ K03980 murJ; putative peptidoglycan lipid II flippase D BOQ54_04415 transporter K13936 mdcF; malonate transporter and related proteins D BOQ54_08930 malonate transporter K13936 mdcF; malonate transporter and related proteins D BOQ54_12890 transporter K13936 mdcF; malonate transporter and related proteins D BOQ54_01455 trkD; potassium transporter Kup K03549 kup; KUP system potassium uptake protein D BOQ54_02910 lysine transporter LysE K05834 rhtB; homoserine/homoserine lactone efflux protein D BOQ54_12585 branched-chain amino acid ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D BOQ54_12950 branched-chain amino acid ABC transporter permease K26605 azlC; branched chain amino acid efflux pump D BOQ54_12955 hypothetical protein K26606 azlD; branched chain amino acid efflux pump D BOQ54_12590 hypothetical protein K26606 azlD; branched chain amino acid efflux pump D BOQ54_06300 C4-dicarboxylate ABC transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_09480 C4-dicarboxylate ABC transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_05135 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_07025 tripartite tricarboxylate transporter TctA K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_03555 C4-dicarboxylate ABC transporter permease K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_03880 tricarboxylate transporter K07793 tctA; putative tricarboxylic transport membrane protein D BOQ54_06295 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_03550 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_05130 tricarboxylic transport K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_07030 tripartite tricarboxylate transporter TctB K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_03885 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_09475 hypothetical protein K07794 tctB; putative tricarboxylic transport membrane protein D BOQ54_05125 tricarboxylic transporter K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_07035 C4-dicarboxylate ABC transporter substrate-binding protein K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_03890 tricarboxylate transporter K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_09470 3-phosphoglycerate dehydrogenase K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_06290 ABC transporter substrate-binding protein K07795 tctC; putative tricarboxylic transport membrane protein D BOQ54_13725 beta-carotene 15,15'-monooxygenase K09125 yhhQ; queuosine precursor transporter D BOQ54_02510 hypothetical protein K09125 yhhQ; queuosine precursor transporter D BOQ54_03735 rubrerythrin family protein K22737 mbfA; erythrin-vacuolar iron transport family protein D BOQ54_02035 MarC family transcriptional regulator K05595 marC; multiple antibiotic resistance protein D BOQ54_08790 MarC family transcriptional regulator K05595 marC; multiple antibiotic resistance protein D BOQ54_12670 cell division protein FtsW K03588 ftsW; cell division protein FtsW D BOQ54_14240 nickel transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein D BOQ54_13090 hypothetical protein K15383 K15383; MtN3 and saliva related transmembrane protein D BOQ54_00085 hypothetical protein K03832 tonB; periplasmic protein TonB D BOQ54_13635 peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein D BOQ54_13640 Tol-Pal system beta propeller repeat protein TolB K03641 tolB; TolB protein D BOQ54_08135 hppA; sodium-translocating pyrophosphatase K15987 hppA; K(+)-stimulated pyrophosphate-energized sodium pump [EC:7.2.3.1] D BOQ54_11945 cytochrome C biogenesis protein K06196 ccdA; cytochrome c-type biogenesis protein D BOQ54_03355 arsenite oxidase small subunit K08355 aoxA; arsenite oxidase small subunit [EC:1.20.2.1 1.20.9.1] D BOQ54_03350 arsenite oxidase large subunit K08356 aoxB; arsenite oxidase large subunit [EC:1.20.2.1 1.20.9.1] D BOQ54_12805 secretion protein HlyD K12537 hasE; membrane fusion protein, type I secretion system D BOQ54_18405 hemolysin secretion protein D K12537 hasE; membrane fusion protein, type I secretion system D BOQ54_02345 hemolysin secretion protein D K12537 hasE; membrane fusion protein, type I secretion system D BOQ54_03025 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_01770 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_14730 hypothetical protein K18990 vexE; membrane fusion protein, multidrug efflux system D BOQ54_01565 efflux transporter periplasmic adaptor subunit K19586 oqxA; membrane fusion protein, multidrug efflux system D BOQ54_12315 hypothetical protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D BOQ54_17275 hypothetical protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D BOQ54_18205 hypothetical protein K16554 exoP; polysaccharide biosynthesis transport protein [EC:2.7.10.3] D BOQ54_08250 hypothetical protein K16692 etk-wzc; tyrosine-protein kinase Etk/Wzc [EC:2.7.10.3] D BOQ54_18225 TspO protein K05770 TSPO; translocator protein D BOQ54_06650 c-type cytochrome biogenesis protein CcmF K02198 ccmF; cytochrome c-type biogenesis protein CcmF D BOQ54_18055 preprotein translocase subunit TatA K07507 mgtC; putative Mg2+ transporter-C (MgtC) family protein D BOQ54_12270 hydroxyisourate hydrolase K07127 uraH; 5-hydroxyisourate hydrolase [EC:3.5.2.17] D BOQ54_11635 hypothetical protein K07274 mipA; MipA family protein C 02044 Secretion system [BR:cdq02044] D BOQ54_08745 channel protein TolC K12340 tolC; outer membrane protein D BOQ54_12810 protease/lipase ABC transporter permease/ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_02340 type I secretion protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_18400 ABC transporter ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase D BOQ54_12805 secretion protein HlyD K12537 hasE; membrane fusion protein, type I secretion system D BOQ54_18405 hemolysin secretion protein D K12537 hasE; membrane fusion protein, type I secretion system D BOQ54_02345 hemolysin secretion protein D K12537 hasE; membrane fusion protein, type I secretion system D BOQ54_16195 peptidase K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D BOQ54_16200 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D BOQ54_16205 secretin K02280 cpaC; pilus assembly protein CpaC D BOQ54_16370 type II and III secretion system protein RhcC2 K02280 cpaC; pilus assembly protein CpaC D BOQ54_16210 hypothetical protein K02281 cpaD; pilus assembly protein CpaD D BOQ54_16215 CtpF protein K02282 cpaE; pilus assembly protein CpaE D BOQ54_16220 protein kinase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] D BOQ54_16225 pilus assembly protein K12510 tadB; tight adherence protein B D BOQ54_16230 type II secretion system protein K12511 tadC; tight adherence protein C D BOQ54_16190 fimbrial protein K02651 flp; pilus assembly protein Flp/PilA D BOQ54_02025 hypothetical protein K02221 yggT; YggT family protein D BOQ54_09280 competence protein ComEC K02238 comEC; competence protein ComEC D BOQ54_16445 EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein K03222 yscJ; type III secretion protein J D BOQ54_16435 hypothetical protein K03223 yscL; type III secretion protein L D BOQ54_16430 EscN/YscN/HrcN family type III secretion system ATPase K03224 yscN; ATP synthase in type III secretion protein N [EC:7.4.2.8] D BOQ54_16420 hypothetical protein K03225 yscQ; type III secretion protein Q D BOQ54_16415 EscR/YscR/HrcR family type III secretion system export apparatus protein K03226 yscR; type III secretion protein R D BOQ54_16410 EscS/YscS/HrcS family type III secretion system export apparatus protein K03227 yscS; type III secretion protein S D BOQ54_16405 EscT/YscT/HrcT family type III secretion system export apparatus protein K03228 yscT; type III secretion protein T D BOQ54_16375 hypothetical protein K03229 yscU; type III secretion protein U D BOQ54_16400 hypothetical protein K03230 yscV; type III secretion protein V D BOQ54_16395 hypothetical protein K04060 yscY; type III secretion protein Y D BOQ54_14920 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BOQ54_15000 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D BOQ54_15090 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BOQ54_14960 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BOQ54_14990 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D BOQ54_12025 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D BOQ54_15015 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BOQ54_14925 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BOQ54_14915 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BOQ54_04525 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D BOQ54_03095 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D BOQ54_03230 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D BOQ54_04470 hypothetical protein K03205 virD4; type IV secretion system protein VirD4 [EC:7.4.2.8] D BOQ54_15330 type VI secretion protein K11891 impL; type VI secretion system protein ImpL D BOQ54_15335 type IV secretion protein DotU K11892 impK; type VI secretion system protein ImpK D BOQ54_15340 type VI secretion system-associated protein K11893 impJ; type VI secretion system protein ImpJ D BOQ54_15405 type VI secretion protein K11895 impH; type VI secretion system protein ImpH D BOQ54_15400 type VI secretion protein K11896 impG; type VI secretion system protein ImpG D BOQ54_15395 type VI secretion protein K11897 impF; type VI secretion system protein ImpF D BOQ54_15385 EvpB family type VI secretion protein K11900 impC; type VI secretion system protein ImpC D BOQ54_15380 type VI secretion system-associated protein K11901 impB; type VI secretion system protein ImpB D BOQ54_15375 hypothetical protein K11902 impA; type VI secretion system protein ImpA D BOQ54_15390 Hcp1 family type VI secretion system effector K11903 hcp; type VI secretion system secreted protein Hcp D BOQ54_15365 hypothetical protein K11904 vgrG; type VI secretion system secreted protein VgrG D BOQ54_15410 ClpV1 family T6SS ATPase K11907 vasG; type VI secretion system protein VasG D BOQ54_15325 type VI secretion-associated protein K11890 impM; type VI secretion system protein ImpM D BOQ54_15355 hypothetical protein K11894 impI; type VI secretion system protein ImpI D BOQ54_00640 preprotein translocase subunit SecA K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] D BOQ54_00810 protein-export chaperone SecB K03071 secB; preprotein translocase subunit SecB D BOQ54_10335 protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD D BOQ54_11515 preprotein translocase subunit SecE K03073 secE; preprotein translocase subunit SecE D BOQ54_10330 protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF D BOQ54_09330 preprotein translocase subunit SecG K03075 secG; preprotein translocase subunit SecG D BOQ54_11340 preprotein translocase subunit SecY K03076 secY; preprotein translocase subunit SecY D BOQ54_03925 signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4] D BOQ54_02330 signal recognition particle-docking protein FtsY K03110 ftsY; fused signal recognition particle receptor D BOQ54_10340 preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC D BOQ54_01380 membrane protein insertase YidC K03217 yidC; YidC/Oxa1 family membrane protein insertase D BOQ54_10380 Sec-independent protein translocase TatA K03116 tatA; sec-independent protein translocase protein TatA D BOQ54_10375 twin arginine-targeting protein translocase TatB K03117 tatB; sec-independent protein translocase protein TatB D BOQ54_10370 twin arginine-targeting protein translocase TatC K03118 tatC; sec-independent protein translocase protein TatC C 02042 Bacterial toxins [BR:cdq02042] D BOQ54_02670 hypothetical protein K03699 tlyC; magnesium and cobalt exporter, CNNM family D BOQ54_10810 hypothetical protein K11068 hlyIII; hemolysin III C 02022 Two-component system [BR:cdq02022] D BOQ54_02365 two-component sensor histidine kinase K07636 phoR; two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] D BOQ54_02395 phosphate regulon transcriptional regulatory protein PhoB K07657 phoB; two-component system, OmpR family, phosphate regulon response regulator PhoB D BOQ54_13685 two-component sensor histidine kinase K07638 envZ; two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3] D BOQ54_13690 DNA-binding response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D BOQ54_17390 DNA-binding response regulator K07659 ompR; two-component system, OmpR family, phosphate regulon response regulator OmpR D BOQ54_05115 sensor histidine kinase K07649 tctE; two-component system, OmpR family, sensor histidine kinase TctE [EC:2.7.13.3] D BOQ54_05120 DNA-binding response regulator K07774 tctD; two-component system, OmpR family, response regulator TctD D BOQ54_01030 histidine kinase K14980 chvG; two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] D BOQ54_01035 DNA-binding response regulator K14981 chvI; two-component system, OmpR family, response regulator ChvI D BOQ54_15105 transcriptional regulator K21603 ftcR; two-component system, OmpR family, flagellar system response regulator FtcR D BOQ54_09680 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D BOQ54_06630 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D BOQ54_06670 DNA-binding response regulator K02483 K02483; two-component system, OmpR family, response regulator D BOQ54_00225 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator D BOQ54_17295 hypothetical protein K07684 narL; two-component system, NarL family, nitrate/nitrite response regulator NarL D BOQ54_09435 two-component sensor histidine kinase K07708 glnL; two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] D BOQ54_09440 nitrogen regulation protein NR(I) K07712 glnG; two-component system, NtrC family, nitrogen regulation response regulator GlnG D BOQ54_09445 PAS domain-containing sensor histidine kinase K13598 ntrY; two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] D BOQ54_09450 sigma-54-dependent Fis family transcriptional regulator K13599 ntrX; two-component system, NtrC family, nitrogen regulation response regulator NtrX D BOQ54_03360 sigma-54-dependent Fis family transcriptional regulator K07713 zraR; two-component system, NtrC family, response regulator HydG D BOQ54_17450 two-component sensor histidine kinase K08475 pgtB; two-component system, NtrC family, phosphoglycerate transport system sensor histidine kinase PgtB [EC:2.7.13.3] D BOQ54_17445 Fis family transcriptional regulator K08476 pgtA; two-component system, NtrC family, phosphoglycerate transport system response regulator PgtA D BOQ54_19135 two-component sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3] D BOQ54_19130 Fis family transcriptional regulator K10126 dctD; two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD D BOQ54_14885 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_15695 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_05420 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_14875 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15115 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15685 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_14870 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BOQ54_15680 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BOQ54_06685 PAS domain-containing sensor histidine kinase K07716 pleC; two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3] D BOQ54_06470 hypothetical protein K11357 divJ; two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] D BOQ54_10635 PleD family two-component system response regulator K02488 pleD; two-component system, cell cycle response regulator [EC:2.7.7.65] D BOQ54_10640 two-component system response regulator K11443 divK; two-component system, cell cycle response regulator DivK D BOQ54_12020 hybrid sensor histidine kinase/response regulator K13587 cckA; two-component system, cell cycle sensor histidine kinase and response regulator CckA [EC:2.7.13.3] D BOQ54_15670 DNA-binding response regulator K13584 ctrA; two-component system, cell cycle response regulator CtrA D BOQ54_14065 response regulator K13589 cpdR; two-component system, cell cycle response regulator CpdR D BOQ54_06365 PAS domain-containing sensor histidine kinase K14986 fixL; two-component system, LuxR family, sensor kinase FixL [EC:2.7.13.3] D BOQ54_06355 response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ D BOQ54_06360 fixJ; DNA-binding response regulator K14987 fixJ; two-component system, LuxR family, response regulator FixJ D BOQ54_01075 two-component sensor histidine kinase K15011 regB; two-component system, sensor histidine kinase RegB [EC:2.7.13.3] D BOQ54_01080 two-component system response regulator K15012 regA; two-component system, response regulator RegA D BOQ54_07200 nitrate transporter K22067 nasS; two-component system, oxyanion-binding sensor D BOQ54_07195 two-component system response regulator K07183 nasT; two-component system, response regulator / RNA-binding antiterminator C 02035 Bacterial motility proteins [BR:cdq02035] D BOQ54_14885 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_15695 hybrid sensor histidine kinase/response regulator K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] D BOQ54_14880 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BOQ54_15690 chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW D BOQ54_14865 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BOQ54_15675 chemotaxis protein CheR K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80] D BOQ54_14870 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BOQ54_15680 chemotaxis response regulator protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44] D BOQ54_05420 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_14875 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15115 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15685 two-component system response regulator K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY D BOQ54_15120 hypothetical protein K03414 cheZ; chemotaxis protein CheZ D BOQ54_07570 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_16605 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_14845 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_14890 methyl-accepting chemotaxis protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_10685 hypothetical protein K03406 mcp; methyl-accepting chemotaxis protein D BOQ54_14960 fliI; flagellum-specific ATP synthase FliI K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8] D BOQ54_15665 flagellar export protein FliJ K02413 fliJ; flagellar protein FliJ D BOQ54_12025 hypothetical protein K02418 fliO; flagellar protein FliO/FliZ D BOQ54_15015 flagellar biosynthetic protein FliP K02419 fliP; flagellar biosynthesis protein FliP D BOQ54_14925 flagellar biosynthetic protein FliQ K02420 fliQ; flagellar biosynthesis protein FliQ D BOQ54_14915 flagellar biosynthetic protein FliR K02421 fliR; flagellar biosynthesis protein FliR D BOQ54_14920 flagellar biosynthesis protein FlhA K02400 flhA; flagellar biosynthesis protein FlhA D BOQ54_15000 flagellar biosynthesis protein FlhB K02401 flhB; flagellar biosynthesis protein FlhB D BOQ54_14995 flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG D BOQ54_14980 flagellar motor switch protein FliM K02416 fliM; flagellar motor switch protein FliM D BOQ54_14990 flagellar motor switch protein FliN K02417 fliN; flagellar motor switch protein FliN D BOQ54_15090 flagellar M-ring protein FliF K02409 fliF; flagellar M-ring protein FliF D BOQ54_15035 flagellar biosynthesis protein FlgI K02394 flgI; flagellar P-ring protein FlgI D BOQ54_15040 flagella basal body P-ring formation protein FlgA K02386 flgA; flagellar basal body P-ring formation protein FlgA D BOQ54_15025 flagellar biosynthesis protein FlgH K02393 flgH; flagellar L-ring protein FlgH D BOQ54_15020 flagellar basal body protein FliL K02415 fliL; flagellar protein FliL D BOQ54_15050 flagellar hook-basal body protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE D BOQ54_15060 flagellar basal-body rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB D BOQ54_15055 flagellar basal body rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC D BOQ54_14930 flgD; flagellar basal body rod modification protein K02389 flgD; flagellar basal-body rod modification protein FlgD D BOQ54_14965 flagellar basal-body rod protein FlgF K02391 flgF; flagellar basal-body rod protein FlgF D BOQ54_15045 flagellar basal-body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG D BOQ54_14905 hypothetical protein K02395 flgJ; peptidoglycan hydrolase FlgJ D BOQ54_14955 flagellar hook protein FlgE K02390 flgE; flagellar hook protein FlgE D BOQ54_14950 flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1 D BOQ54_14945 hypothetical protein K02397 flgL; flagellar hook-associated protein 3 FlgL D BOQ54_15095 flagellin K02406 fliC; flagellin D BOQ54_15100 flagellin K02406 fliC; flagellin D BOQ54_14975 flagellar motor stator protein MotA K02556 motA; chemotaxis protein MotA D BOQ54_13875 hypothetical protein K02557 motB; chemotaxis protein MotB D BOQ54_15080 hypothetical protein K02557 motB; chemotaxis protein MotB D BOQ54_15075 hypothetical protein K10564 motC; chemotaxis protein MotC D BOQ54_15070 hypothetical protein K10565 motD; chemotaxis protein MotD D BOQ54_14940 flagellar biosynthesis regulator FlhF K06602 flaF; flagellar biosynthesis activator protein FlaF D BOQ54_14935 flagellar biosynthesis repressor FlbT K06601 flbT; flagellar biosynthesis repressor protein FlbT D BOQ54_16190 fimbrial protein K02651 flp; pilus assembly protein Flp/PilA D BOQ54_16195 peptidase K02278 cpaA; prepilin peptidase CpaA [EC:3.4.23.43] D BOQ54_16200 Flp pilus assembly protein CpaB K02279 cpaB; pilus assembly protein CpaB D BOQ54_16205 secretin K02280 cpaC; pilus assembly protein CpaC D BOQ54_16370 type II and III secretion system protein RhcC2 K02280 cpaC; pilus assembly protein CpaC D BOQ54_16210 hypothetical protein K02281 cpaD; pilus assembly protein CpaD D BOQ54_16215 CtpF protein K02282 cpaE; pilus assembly protein CpaE D BOQ54_16220 protein kinase K02283 cpaF; pilus assembly protein CpaF [EC:7.4.2.8] C 03037 Cilium and associated proteins C 04812 Cytoskeleton proteins [BR:cdq04812] D BOQ54_12635 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BOQ54_12640 cell division protein FtsA K03590 ftsA; cell division protein FtsA D BOQ54_17805 plasmid partitioning protein RepA K03496 parA; chromosome partitioning protein D BOQ54_04515 hypothetical protein K03496 parA; chromosome partitioning protein D BOQ54_00745 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D BOQ54_03080 chromosome partitioning protein ParA K03496 parA; chromosome partitioning protein D BOQ54_03240 hypothetical protein K03496 parA; chromosome partitioning protein D BOQ54_17800 plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_04600 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_00740 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_03120 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein C 04147 Exosome [BR:cdq04147] D BOQ54_09375 phosphopyruvate hydratase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] D BOQ54_13835 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] D BOQ54_13845 phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3] D BOQ54_14045 pyruvate kinase K00873 PK; pyruvate kinase [EC:2.7.1.40] D BOQ54_11280 hypothetical protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] D BOQ54_05470 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_11820 chaperonin GroL K04077 groEL; chaperonin GroEL [EC:5.6.1.7] D BOQ54_16680 molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK D BOQ54_05375 glucose-6-phosphate isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9] D BOQ54_10020 gluconolactonase K01053 gnl; gluconolactonase [EC:3.1.1.17] D BOQ54_07770 IMP dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205] D BOQ54_11450 translation elongation factor Tu K02358 tuf; elongation factor Tu D BOQ54_11525 translation elongation factor Tu K02358 tuf; elongation factor Tu D BOQ54_10680 HIT family protein K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-] D BOQ54_07515 hypothetical protein K14347 SLC10A7; solute carrier family 10 (sodium/bile acid cotransporter), member 7 D BOQ54_13035 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_05225 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_14205 long-chain fatty acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3] D BOQ54_02355 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_02480 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_15845 acetyl-CoA acetyltransferase K00626 ACAT; acetyl-CoA C-acetyltransferase [EC:2.3.1.9] D BOQ54_00235 adenosylhomocysteinase K01251 AHCY; adenosylhomocysteinase [EC:3.13.2.1] D BOQ54_11335 adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3] D BOQ54_13245 adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7] D BOQ54_00470 argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1] D BOQ54_15980 argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5] D BOQ54_10210 fumarylacetoacetase K01555 FAH; fumarylacetoacetase [EC:3.7.1.2] D BOQ54_01290 glycerol kinase K00864 glpK; glycerol kinase [EC:2.7.1.30] D BOQ54_07685 glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_08985 type I glutamate--ammonia ligase K01915 glnA; glutamine synthetase [EC:6.3.1.2] D BOQ54_08070 delta-aminolevulinic acid dehydratase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24] D BOQ54_14720 4-hydroxyphenylpyruvate dioxygenase K00457 HPD; 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27] D BOQ54_02040 pterin-4-alpha-carbinolamine dehydratase K01724 PCBD; 4a-hydroxytetrahydrobiopterin dehydratase [EC:4.2.1.96] D BOQ54_13580 phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399] D BOQ54_02105 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] D BOQ54_01935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_12935 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_09400 dihydrolipoyl dehydrogenase K00382 DLD; dihydrolipoyl dehydrogenase [EC:1.8.1.4] D BOQ54_04300 electron transfer flavoprotein subunit alpha K03522 fixB; electron transfer flavoprotein alpha subunit D BOQ54_09835 glucose-6-phosphate dehydrogenase K00036 G6PD; glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] D BOQ54_09325 triose-phosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1] D BOQ54_16720 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase K01834 PGAM; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.11] C 02048 Prokaryotic defense system [BR:cdq02048] D BOQ54_11145 subtype I-C CRISPR-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1 D BOQ54_11140 CRISPR-associated endonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2 D BOQ54_11170 CRISPR-associated endonuclease Cas3'' K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4] D BOQ54_11150 CRISPR-associated protein Cas4 K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1] D BOQ54_11160 type I-C CRISPR-associated protein Cas8c/Csd1 K19117 csd1; CRISPR-associated protein Csd1 D BOQ54_11155 type I-C CRISPR-associated protein Cas7/Csd2 K19118 csd2; CRISPR-associated protein Csd2 D BOQ54_11165 type I-C CRISPR-associated protein Cas5 K19119 cas5d; CRISPR-associated protein Cas5d D BOQ54_04690 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D BOQ54_04975 DEAD/DEAH box helicase K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3] D BOQ54_04680 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D BOQ54_04980 hypothetical protein K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3] D BOQ54_04675 N-6 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D BOQ54_04985 DNA methylase K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72] D BOQ54_05645 modification methylase K13581 ccrM; modification methylase [EC:2.1.1.72] D BOQ54_05005 restriction endonuclease subunit R K01156 res; type III restriction enzyme [EC:3.1.21.5] D BOQ54_04645 type III restriction endonuclease subunit R K01156 res; type III restriction enzyme [EC:3.1.21.5] D BOQ54_04640 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D BOQ54_05010 site-specific DNA-methyltransferase K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72] D BOQ54_04950 restriction endonuclease K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-] D BOQ54_01495 growth inhibitor PemK K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D BOQ54_03215 transcriptional regulator K07171 mazF; mRNA interferase MazF [EC:3.1.-.-] D BOQ54_03220 peptidase K07172 mazE; antitoxin MazE D BOQ54_15175 hypothetical protein K19156 prlF; antitoxin PrlF D BOQ54_06070 hypothetical protein K19686 vapC; ribonuclease VapC [EC:3.1.-.-] D BOQ54_06075 hypothetical protein K19687 vapB; antitoxin VapB D BOQ54_01170 hypothetical protein K21495 fitA; antitoxin FitA D BOQ54_12635 cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ D BOQ54_08020 DNA topoisomerase IV subunit A K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2] D BOQ54_09980 DNA topoisomerase IV subunit B K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2] D BOQ54_09275 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_07085 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17] D BOQ54_09800 succinate dehydrogenase assembly factor 2 K09159 cptB; antitoxin CptB D BOQ54_09925 cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7] C 04030 G protein-coupled receptors C 04050 Cytokine receptors C 04054 Pattern recognition receptors C 03310 Nuclear receptors C 04040 Ion channels C 04031 GTP-binding proteins C 04052 Cytokines and neuropeptides C 04515 Cell adhesion molecules C 04090 CD molecules C 01504 Antimicrobial resistance genes [BR:cdq01504] D BOQ54_00880 GNAT family N-acetyltransferase K00663 aacA; aminoglycoside 6'-N-acetyltransferase [EC:2.3.1.82] D BOQ54_16880 APH(3') family aminoglycoside O-phosphotransferase K19300 aph3-II; aminoglycoside 3'-phosphotransferase II [EC:2.7.1.95] D BOQ54_03415 MFS transporter K08167 smvA; MFS transporter, DHA2 family, multidrug resistance protein D BOQ54_03025 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_01770 efflux transporter periplasmic adaptor subunit K03585 acrA; membrane fusion protein, multidrug efflux system D BOQ54_03030 multidrug transporter AcrB K18138 acrB; multidrug efflux pump D BOQ54_14400 multidrug transporter AcrB K18303 mexK; multidrug efflux pump D BOQ54_01815 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BOQ54_08745 channel protein TolC K12340 tolC; outer membrane protein C 00535 Proteoglycans C 00536 Glycosaminoglycan binding proteins C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:cdq00537] D BOQ54_11280 hypothetical protein K01273 DPEP; membrane dipeptidase [EC:3.4.13.19] C 04091 Lectins C 04990 Domain-containing proteins not elsewhere classified B B 09185 Viral protein families C 03200 Viral proteins C 03210 Viral fusion proteins B B 09184 RNA family C 03100 Non-coding RNAs [BR:cdq03100] D BOQ54_03045 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BOQ54_16570 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BOQ54_02030 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BOQ54_04435 tRNA-Ala K14218 tRNA-Ala; tRNA Ala D BOQ54_01350 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BOQ54_11120 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BOQ54_05090 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BOQ54_02555 tRNA-Arg K14219 tRNA-Arg; tRNA Arg D BOQ54_08730 tRNA-Asn K14220 tRNA-Asn; tRNA Asn D BOQ54_09045 tRNA-Asp K14221 tRNA-Asp; tRNA Asp D BOQ54_08735 tRNA-Cys K14222 tRNA-Cys; tRNA Cys D BOQ54_06425 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BOQ54_07730 tRNA-Gln K14223 tRNA-Gln; tRNA Gln D BOQ54_11175 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BOQ54_13545 tRNA-Glu K14224 tRNA-Glu; tRNA Glu D BOQ54_02450 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BOQ54_01635 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BOQ54_11530 tRNA-Gly K14225 tRNA-Gly; tRNA Gly D BOQ54_03840 tRNA-His K14226 tRNA-His; tRNA His D BOQ54_03040 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BOQ54_04430 tRNA-Ile K14227 tRNA-Ile; tRNA Ile D BOQ54_00115 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_04275 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_11750 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_09010 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_08415 tRNA-Leu K14228 tRNA-Leu; tRNA Leu D BOQ54_08850 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BOQ54_12385 tRNA-Lys K14229 tRNA-Lys; tRNA Lys D BOQ54_15625 tRNA-Met K14230 tRNA-Met; tRNA Met D BOQ54_03060 tRNA-Met K14230 tRNA-Met; tRNA Met D BOQ54_04450 tRNA-Met K14230 tRNA-Met; tRNA Met D BOQ54_12940 tRNA-Met K14230 tRNA-Met; tRNA Met D BOQ54_07185 tRNA-Phe K14231 tRNA-Phe; tRNA Phe D BOQ54_08205 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BOQ54_11110 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BOQ54_06430 tRNA-Pro K14232 tRNA-Pro; tRNA Pro D BOQ54_10000 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BOQ54_14440 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BOQ54_07400 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BOQ54_04050 tRNA-Ser K14233 tRNA-Ser; tRNA Ser D BOQ54_03740 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BOQ54_11560 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BOQ54_02095 tRNA-Thr K14234 tRNA-Thr; tRNA Thr D BOQ54_11520 tRNA-Trp K14235 tRNA-Trp; tRNA Trp D BOQ54_11535 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr D BOQ54_09040 tRNA-Val K14237 tRNA-Val; tRNA Val D BOQ54_14060 tRNA-Val K14237 tRNA-Val; tRNA Val D BOQ54_06985 tRNA-Val K14237 tRNA-Val; tRNA Val D BOQ54_03035 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BOQ54_04425 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA D BOQ54_03050 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BOQ54_04440 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA D BOQ54_03055 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BOQ54_04445 rrf; 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA D BOQ54_16140 ffs; signal recognition particle sRNA small type K01983 ffs; SRP RNA D BOQ54_12715 rnpB; RNase P RNA component class A K01978 rnpB; M1 RNA D BOQ54_12520 ssrA; transfer-messenger RNA K15035 ssrA; transfer-messenger RNA # A09190 Not Included in Pathway or Brite B B 09191 Unclassified: metabolism C 99980 Enzymes with EC numbers D BOQ54_01275 gluconate 5-dehydrogenase K00046 idnO; gluconate 5-dehydrogenase [EC:1.1.1.69] D BOQ54_05175 histidinol dehydrogenase K15509 hpsN; sulfopropanediol 3-dehydrogenase [EC:1.1.1.308] D BOQ54_14675 NAD-dependent epimerase K22025 denD; D-erythronate 2-dehydrogenase [EC:1.1.1.410] D BOQ54_06765 3-hydroxyisobutyrate dehydrogenase K08319 ltnD; L-threonate 2-dehydrogenase [EC:1.1.1.411] D BOQ54_03615 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D BOQ54_17180 ABC transporter substrate-binding protein K21416 acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [EC:1.1.1.-] D BOQ54_03610 alpha-ketoacid dehydrogenase subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D BOQ54_17175 alpha-ketoacid dehydrogenase subunit beta K21417 acoB; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta [EC:1.1.1.-] D BOQ54_13075 hypothetical protein K21430 yliI; aldose sugar dehydrogenase [EC:1.1.5.-] D BOQ54_11880 carbon monoxide dehydrogenase K03518 coxS; aerobic carbon-monoxide dehydrogenase small subunit [EC:1.2.5.3] D BOQ54_11870 carbon monoxide dehydrogenase K03519 coxM; aerobic carbon-monoxide dehydrogenase medium subunit [EC:1.2.5.3] D BOQ54_12245 carbon monoxide dehydrogenase K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D BOQ54_11875 carbon monoxide dehydrogenase K03520 coxL; aerobic carbon-monoxide dehydrogenase large subunit [EC:1.2.5.3] D BOQ54_14230 indolepyruvate ferredoxin oxidoreductase K04090 E1.2.7.8; indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8] D BOQ54_00405 aldehyde oxidase K07469 mop; aldehyde oxidoreductase [EC:1.2.99.7] D BOQ54_09670 (2Fe-2S)-binding protein K07302 iorA; isoquinoline 1-oxidoreductase subunit alpha [EC:1.3.99.16] D BOQ54_09665 aldehyde dehydrogenase K07303 iorB; isoquinoline 1-oxidoreductase subunit beta [EC:1.3.99.16] D BOQ54_03815 acyl-CoA dehydrogenase K18244 mmgC; acyl-CoA dehydrogenase [EC:1.3.99.-] D BOQ54_09490 NAD/NADP octopine/nopaline dehydrogenase K04940 odh; opine dehydrogenase [EC:1.5.1.28] D BOQ54_05870 electron transfer flavoprotein-ubiquinone oxidoreductase K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] D BOQ54_15470 NAD(P)H-quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D BOQ54_08955 quinone oxidoreductase K00344 qor; NADPH:quinone reductase [EC:1.6.5.5] D BOQ54_06820 NAD(P)H dehydrogenase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D BOQ54_06830 FMN-dependent NADH-azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17] D BOQ54_17495 cystathionine gamma-synthase K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2] D BOQ54_14430 peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D BOQ54_11740 peptide-methionine (S)-S-oxide reductase K07304 msrA; peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] D BOQ54_06440 peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D BOQ54_11745 peptide-methionine (R)-S-oxide reductase K07305 msrB; peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] D BOQ54_12885 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D BOQ54_10540 glutathione S-transferase K11209 yghU; GSH-dependent disulfide-bond oxidoreductase [EC:1.8.4.-] D BOQ54_13325 glutathione-dependent reductase K07393 ECM4; glutathionyl-hydroquinone reductase [EC:1.8.5.7] D BOQ54_13030 mononuclear molybdenum enzyme YedY K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-] D BOQ54_18020 oxidase K17893 AOX1; ubiquinol oxidase [EC:1.10.3.11] D BOQ54_08040 cytochrome C peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5] D BOQ54_09905 peroxiredoxin K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D BOQ54_05185 peroxidase K24158 prx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24] D BOQ54_19020 OsmC family peroxiredoxin K04063 osmC; lipoyl-dependent peroxiredoxin [EC:1.11.1.28] D BOQ54_01850 alkyl hydroperoxide reductase K04756 ahpD; lipoyl-dependent peroxiredoxin subunit D [EC:1.11.1.28] D BOQ54_01855 alkyl hydroperoxide reductase K24126 ahpC; lipoyl-dependent peroxiredoxin subunit C [EC:1.11.1.28] D BOQ54_08030 Fe2+-dependent dioxygenase K07336 K07336; PKHD-type hydroxylase [EC:1.14.11.-] D BOQ54_19200 ornithine monooxygenase K10531 pvdA; L-ornithine N5-monooxygenase [EC:1.14.13.195 1.14.13.196] D BOQ54_09725 copper oxidase K22348 moxA; manganese oxidase [EC:1.16.3.3] D BOQ54_00465 ferredoxin--NADP(+) reductase K00528 fpr; ferredoxin/flavodoxin---NADP+ reductase [EC:1.18.1.2 1.19.1.1] D BOQ54_17100 arsenate reductase (glutaredoxin) K00537 arsC; arsenate reductase (glutaredoxin) [EC:1.20.4.1] D BOQ54_17105 ArsR family transcriptional regulator K03741 arsC; arsenate reductase (thioredoxin) [EC:1.20.4.4] D BOQ54_08430 hypothetical protein K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D BOQ54_08740 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D BOQ54_10355 protein-L-isoaspartate O-methyltransferase K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] D BOQ54_07960 SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D BOQ54_02140 SAM-dependent methyltransferase K00574 cfa; cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] D BOQ54_00950 apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269] D BOQ54_00925 1-acyl-sn-glycerol-3-phosphate acyltransferase K22617 olsA; lyso-ornithine lipid O-acyltransferase [EC:2.3.1.270] D BOQ54_07135 GNAT family N-acetyltransferase K03830 yafP; putative acetyltransferase [EC:2.3.1.-] D BOQ54_16330 hypothetical protein K24217 mnaT; L-amino acid N-acyltransferase [EC:2.3.1.-] D BOQ54_09760 leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6] D BOQ54_08050 arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29] D BOQ54_16645 ornithine--acyl-ACP N-acyltransferase OlsB K22310 olsB; L-ornithine Nalpha-acyltransferase [EC:2.3.2.30] D BOQ54_13220 prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145] D BOQ54_17380 thiamine biosynthesis protein ApbE K03734 apbE; FAD:protein FMN transferase [EC:2.7.1.180] D BOQ54_03560 hypothetical protein K18478 yihV; sulfofructose kinase [EC:2.7.1.184] D BOQ54_07425 hypothetical protein K18478 yihV; sulfofructose kinase [EC:2.7.1.184] D BOQ54_06755 hypothetical protein K21948 otnK; 3-dehydrotetronate 4-kinase [EC:2.7.1.217] D BOQ54_00785 phosphoenolpyruvate synthase regulatory protein K09773 ppsR; [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase [EC:2.7.4.28 2.7.11.33] D BOQ54_06680 glutamine-synthetase adenylyltransferase K00982 glnE; [glutamine synthetase] adenylyltransferase / [glutamine synthetase]-adenylyl-L-tyrosine phosphorylase [EC:2.7.7.42 2.7.7.89] D BOQ54_01025 serine/threonine protein kinase K06023 hprK; HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] D BOQ54_10770 CoA transferase K18702 uctC; CoA:oxalate CoA-transferase [EC:2.8.3.19] D BOQ54_01480 O-acetyl-ADP-ribose deacetylase K23518 MACROD; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106] D BOQ54_14535 hypothetical protein K18700 flK; fluoroacetyl-CoA thioesterase [EC:3.1.2.29] D BOQ54_12560 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D BOQ54_13770 tol-pal system-associated acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D BOQ54_00620 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-] D BOQ54_17420 hypothetical protein K22306 gpgP; glucosyl-3-phosphoglycerate phosphatase [EC:3.1.3.85] D BOQ54_12065 phosphoglycerate mutase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-] D BOQ54_10065 LuxR family transcriptional regulator K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D BOQ54_04540 hydrolase TatD K03424 tatD; TatD DNase family protein [EC:3.1.21.-] D BOQ54_02130 hypothetical protein K01174 nuc; micrococcal nuclease [EC:3.1.31.1] D BOQ54_17765 hypothetical protein K25649 mgh; mannosylglycerate hydrolase [EC:3.2.1.170] D BOQ54_02470 hypothetical protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D BOQ54_10705 hypothetical protein K01286 E3.4.16.4; D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] D BOQ54_12740 N-acetylmuramoyl-L-alanine amidase K01447 xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] D BOQ54_01700 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D BOQ54_16045 peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88] D BOQ54_06835 hydrolase K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128] D BOQ54_17760 PIG-L domain-containing protein K01463 bshB1; N-acetylglucosamine malate deacetylase 1 [EC:3.5.1.-] D BOQ54_17845 agmatinase K18459 gpuA; guanidinopropionase [EC:3.5.3.17] D BOQ54_13300 AAA family ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-] D BOQ54_11980 alpha/beta hydrolase K07002 RBBP9; serine hydrolase [EC:3.-.-.-] D BOQ54_06750 aldolase K22130 otnC; 3-dehydro-4-phosphotetronate decarboxylase [EC:4.1.1.104] D BOQ54_01505 galactonate dehydratase K26399 K26399; arabinonate dehydratase [EC:4.2.1.5] D BOQ54_08995 bifunctional ADP-dependent (S)-NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6] D BOQ54_01510 fucose-binding protein K02431 fucU; L-fucose mutarotase [EC:5.1.3.29] D BOQ54_18525 D-tagatose 3-epimerase K18910 dpe; D-psicose/D-tagatose/L-ribulose 3-epimerase [EC:5.1.3.30 5.1.3.31] D BOQ54_03505 D-tagatose 3-epimerase K18910 dpe; D-psicose/D-tagatose/L-ribulose 3-epimerase [EC:5.1.3.30 5.1.3.31] D BOQ54_10130 L-rhamnose mutarotase K03534 rhaM; L-rhamnose mutarotase [EC:5.1.3.32] D BOQ54_06770 hydroxypyruvate isomerase K22131 otnI; 2-dehydrotetronate isomerase [EC:5.3.1.35] D BOQ54_03430 nitrogen fixation protein FixI K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9] D BOQ54_04185 ATPase K01534 zntA; Zn2+/Cd2+-exporting ATPase [EC:7.2.2.12 7.2.2.21] C 99981 Carbohydrate metabolism D BOQ54_11775 sugar fermentation stimulation protein SfsA K06206 sfsA; sugar fermentation stimulation protein A D BOQ54_05310 Fe-S oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE D BOQ54_05300 iron-sulfur cluster-binding protein K18929 lldF; L-lactate dehydrogenase complex protein LldF D BOQ54_05295 lactate utilization protein K00782 lldG; L-lactate dehydrogenase complex protein LldG C 99982 Energy metabolism D BOQ54_07265 formate dehydrogenase family accessory protein FdhD K02379 fdhD; FdhD protein D BOQ54_12135 2Fe-2S ferredoxin K04755 fdx; ferredoxin, 2Fe-2S D BOQ54_02535 ferredoxin K05524 fdxA; ferredoxin D BOQ54_00460 ferredoxin K05524 fdxA; ferredoxin D BOQ54_17895 protein norD K02448 norD; nitric oxide reductase NorD protein D BOQ54_17955 copper oxidase K02164 norE; nitric oxide reductase NorE protein D BOQ54_17900 AAA family ATPase K04748 norQ; nitric oxide reductase NorQ protein D BOQ54_17880 nitrate reductase formation protein NapD K02570 napD; periplasmic nitrate reductase NapD D BOQ54_17885 ferredoxin-type protein NapF K02572 napF; ferredoxin-type protein NapF D BOQ54_17890 periplasmic nitrate reductase, NapE protein K02571 napE; periplasmic nitrate reductase NapE D BOQ54_17865 cytochrome C K02569 napC; cytochrome c-type protein NapC D BOQ54_04305 electron transfer flavoprotein subunit beta K03521 fixA; electron transfer flavoprotein beta subunit C 99983 Lipid metabolism D BOQ54_07565 DNA alkylation response protein K09456 aidB; putative acyl-CoA dehydrogenase C 99984 Nucleotide metabolism C 99985 Amino acid metabolism D BOQ54_00145 cysteine biosynthesis protein CysZ K06203 cysZ; CysZ protein D BOQ54_00720 YggS family pyridoxal phosphate enzyme K06997 yggS; PLP dependent protein D BOQ54_17580 cupin K21700 bauB; beta-alanine degradation protein BauB C 99986 Glycan metabolism D BOQ54_02560 hypothetical protein K16567 exoQ; exopolysaccharide production protein ExoQ D BOQ54_01430 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein D BOQ54_15655 hypothetical protein K07027 K07027; glycosyltransferase 2 family protein C 99987 Cofactor metabolism D BOQ54_02590 cobalamin biosynthesis protein CobW K02234 cobW; cobalamin biosynthesis protein CobW D BOQ54_02090 heme biosynthesis protein HemY K02498 hemY; HemY protein D BOQ54_00515 2-polyprenylphenol 6-hydroxylase K03688 ubiB; ubiquinone biosynthesis protein D BOQ54_17990 sterol-binding protein K24843 ubiT; O2-independent ubiquinone biosynthesis accessory factor UbiT D BOQ54_07345 molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein D BOQ54_09415 ubiquinone-binding protein K18588 COQ10; coenzyme Q-binding protein COQ10 C 99988 Secondary metabolism C 99999 Others D BOQ54_17705 ring-cleaving dioxygenase K15975 K15975; glyoxalase family protein D BOQ54_11270 ring-cleaving dioxygenase K15975 K15975; glyoxalase family protein D BOQ54_06000 hypothetical protein K15977 K15977; putative oxidoreductase D BOQ54_11825 DoxX family protein K15977 K15977; putative oxidoreductase D BOQ54_04400 phospholipase K06999 K06999; phospholipase/carboxylesterase D BOQ54_03810 GNAT family N-acetyltransferase K09181 yfiQ; acetyltransferase B B 09192 Unclassified: genetic information processing C 99973 Transcription D BOQ54_03630 hypothetical protein K02466 gutM; glucitol operon activator protein D BOQ54_09860 cold-shock protein K03704 cspA; cold shock protein D BOQ54_11105 cold-shock protein K03704 cspA; cold shock protein D BOQ54_07410 hypothetical protein K03704 cspA; cold shock protein D BOQ54_01600 transcriptional regulator K04752 glnK; nitrogen regulatory protein P-II 2 D BOQ54_01575 RNA-binding transcriptional accessory protein K06959 tex; protein Tex C 99974 Translation D BOQ54_08700 multidrug ABC transporter ATP-binding protein K13926 rbbA; ribosome-dependent ATPase D BOQ54_15885 DNA ligase-associated DEXH box helicase K07577 K07577; putative mRNA 3-end processing factor C 99975 Protein processing D BOQ54_05480 heat-shock protein K03668 hslJ; heat shock protein HslJ D BOQ54_10695 ATP-dependent Clp protease adapter ClpS K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS D BOQ54_09015 trigger factor K03545 tig; trigger factor D BOQ54_15190 urease accessory protein UreE K03187 ureE; urease accessory protein D BOQ54_15195 urease accessory protein UreF K03188 ureF; urease accessory protein D BOQ54_15200 urease accessory protein UreG K03189 ureG; urease accessory protein D BOQ54_15165 hypothetical protein K03190 ureD; urease accessory protein D BOQ54_15205 urease accessory protein K03192 ureJ; urease accessory protein D BOQ54_07505 SsrA-binding protein K03664 smpB; SsrA-binding protein D BOQ54_16655 AAA family ATPase K07391 comM; magnesium chelatase family protein D BOQ54_15220 peptidase K07395 K07395; putative proteasome-type protease D BOQ54_05520 selenoprotein K07401 K07401; selenoprotein W-related protein D BOQ54_06720 xanthine dehydrogenase accessory protein XdhC K07402 xdhC; xanthine dehydrogenase accessory factor D BOQ54_11845 XdhC/CoxF family protein K07402 xdhC; xanthine dehydrogenase accessory factor D BOQ54_04085 serine protease K07403 nfeD; membrane-bound serine protease (ClpP class) C 99976 Replication and repair D BOQ54_03285 hypothetical protein K07445 K07445; putative DNA methylase D BOQ54_11795 hypothetical protein K03630 radC; DNA repair protein RadC D BOQ54_16050 DNA recombinase K09760 rmuC; DNA recombination protein RmuC D BOQ54_03295 hypothetical protein K07459 ybjD; putative ATP-dependent endonuclease of the OLD family D BOQ54_16755 hypothetical protein K07460 yraN; putative endonuclease D BOQ54_10605 DNA protecting protein DprA K04096 smf; DNA processing protein D BOQ54_11305 AAA family ATPase K07478 ycaJ; putative ATPase D BOQ54_03075 IS5 family transposase K07481 K07481; transposase, IS5 family D BOQ54_03315 transposase K07497 K07497; putative transposase D BOQ54_03320 transposase K07497 K07497; putative transposase C 99979 Viral proteins C 99998 Others D BOQ54_16150 YbaB/EbfC family nucleoid-associated protein K09747 ebfC; nucleoid-associated protein EbfC B B 09193 Unclassified: signaling and cellular processes C 99977 Transport D BOQ54_05650 sodium:alanine symporter K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family C 99978 Cell growth D BOQ54_02325 septation protein A K06190 ispZ; intracellular septation protein D BOQ54_12905 SpoVR family protein K06415 spoVR; stage V sporulation protein R D BOQ54_03990 hypothetical protein K22719 envC; murein hydrolase activator C 99993 Cell motility D BOQ54_09965 TfoX domain-containing protein K07343 tfoX; DNA transformation protein and related proteins C 99995 Signaling proteins D BOQ54_12125 universal stress protein UspA K14061 uspF; universal stress protein F D BOQ54_00490 GTP-binding protein TypA K06207 typA; GTP-binding protein D BOQ54_00935 phosphate starvation-inducible protein PhoH K06217 phoH; phosphate starvation-inducible protein PhoH and related proteins D BOQ54_12895 PrkA family serine protein kinase K07180 prkA; serine protein kinase C 99992 Structural proteins D BOQ54_08390 glycoside hydrolase K07273 acm; lysozyme D BOQ54_07705 hypothetical protein K07289 asmA; AsmA protein D BOQ54_14150 hypothetical protein K07340 ybbJ; inner membrane protein D BOQ54_08695 efflux transporter periplasmic adaptor subunit K01993 ABC-2.TX; HlyD family secretion protein D BOQ54_06645 cytochrome c biogenesis protein CcmE K02197 ccmE; cytochrome c-type biogenesis protein CcmE D BOQ54_06640 c-type cytochrome biogenesis protein CcmI K02200 ccmH; cytochrome c-type biogenesis protein CcmH D BOQ54_06655 cytochrome c-type biogenesis protein CcmH K02200 ccmH; cytochrome c-type biogenesis protein CcmH C 99994 Others D BOQ54_02390 phosphate transport system regulatory protein PhoU K02039 phoU; phosphate transport system protein D BOQ54_03800 hypothetical protein K02192 bfd; bacterioferritin-associated ferredoxin D BOQ54_09770 glucan biosynthesis protein D K03670 mdoG; periplasmic glucans biosynthesis protein D BOQ54_14295 glucan biosynthesis protein D K03670 mdoG; periplasmic glucans biosynthesis protein D BOQ54_14590 glucan biosynthesis protein G K03670 mdoG; periplasmic glucans biosynthesis protein D BOQ54_05070 hypothetical protein K05794 terC; tellurite resistance protein TerC D BOQ54_10860 phosphonate C-P lyase system protein PhnK K05781 phnK; putative phosphonate transport system ATP-binding protein D BOQ54_02425 Co2+/Mg2+ efflux protein ApaG K06195 apaG; ApaG protein D BOQ54_17360 carbohydrate-binding protein K07218 nosD; nitrous oxidase accessory protein D BOQ54_09545 pyridine nucleotide-disulfide oxidoreductase K07222 K07222; putative flavoprotein involved in K+ transport D BOQ54_17970 short-chain dehydrogenase K07234 K07234; uncharacterized protein involved in response to NO D BOQ54_18600 hypothetical protein K07234 K07234; uncharacterized protein involved in response to NO D BOQ54_17375 copper resistance protein CopZ K19342 nosL; copper chaperone NosL B B 09194 Poorly characterized C 99996 General function prediction only D BOQ54_07940 colicin V synthesis protein K03558 cvpA; membrane protein required for colicin V production D BOQ54_09165 cation transporter K06197 chaB; cation transport regulator D BOQ54_13680 tRNA-binding protein K06878 K06878; tRNA-binding protein D BOQ54_01655 preprotein translocase subunit TatC K06886 glbN; hemoglobin D BOQ54_01475 patatin K07001 K07001; NTE family protein D BOQ54_05435 patatin K07001 K07001; NTE family protein D BOQ54_11655 NTE family protein rssA K07001 K07001; NTE family protein D BOQ54_01405 pyrimidine 5'-nucleotidase K07025 K07025; putative hydrolase of the HAD superfamily D BOQ54_16950 2-haloalkanoic acid dehalogenase K07025 K07025; putative hydrolase of the HAD superfamily D BOQ54_09930 Fe-S cluster assembly protein SufB K09014 sufB; Fe-S cluster assembly protein SufB D BOQ54_09940 Fe-S cluster assembly protein SufD K09015 sufD; Fe-S cluster assembly protein SufD D BOQ54_02755 hypothetical protein K07058 K07058; membrane protein D BOQ54_18690 phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase D BOQ54_06460 cysteine desufuration protein SufE K02426 sufE; cysteine desulfuration protein SufE D BOQ54_06780 glyoxalase K04750 phnB; PhnB protein D BOQ54_03325 arsenical resistance protein ArsH K11811 arsH; arsenical resistance protein ArsH D BOQ54_19075 siderophore-iron reductase FhuF K13255 fhuF; ferric iron reductase protein FhuF D BOQ54_15495 hypothetical protein K02351 K02351; putative membrane protein D BOQ54_02235 hypothetical protein K03744 lemA; LemA protein D BOQ54_01090 hypothetical protein K03744 lemA; LemA protein D BOQ54_07120 hypothetical protein K05805 creA; CreA protein D BOQ54_09340 hypothetical protein K08989 K08989; putative membrane protein D BOQ54_12055 TIGR01620 family protein K08990 ycjF; putative membrane protein C 99997 Function unknown D BOQ54_00765 thioredoxin domain-containing protein K06888 K06888; uncharacterized protein D BOQ54_13975 hypothetical protein K06889 K06889; uncharacterized protein D BOQ54_02175 hypothetical protein K06890 K06890; uncharacterized protein D BOQ54_18310 hypothetical protein K06890 K06890; uncharacterized protein D BOQ54_12060 amino acid regulated cytosolic protein K06918 K06918; uncharacterized protein D BOQ54_10345 AAA family ATPase K06923 K06923; uncharacterized protein D BOQ54_08310 CoA-binding protein K06929 K06929; uncharacterized protein D BOQ54_15870 phosphoesterase K06953 K06953; uncharacterized protein D BOQ54_16910 cupin K06995 K06995; uncharacterized protein D BOQ54_10035 flavin-nucleotide-binding protein K07006 K07006; uncharacterized protein D BOQ54_09920 alpha/beta hydrolase K07018 K07018; uncharacterized protein D BOQ54_09175 hypothetical protein K07028 K07028; uncharacterized protein D BOQ54_18695 aminoglycoside phosphotransferase K07028 K07028; uncharacterized protein D BOQ54_05820 glyoxalase K07032 K07032; uncharacterized protein D BOQ54_19025 extradiol dioxygenase K07032 K07032; uncharacterized protein D BOQ54_03585 hypothetical protein K07041 K07041; uncharacterized protein D BOQ54_05850 hypothetical protein K07054 K07054; uncharacterized protein D BOQ54_03205 hypothetical protein K07075 K07075; uncharacterized protein D BOQ54_14290 C4-dicarboxylate ABC transporter K07080 K07080; uncharacterized protein D BOQ54_14755 immunogenic protein K07080 K07080; uncharacterized protein D BOQ54_19125 C4-dicarboxylate ABC transporter substrate-binding protein K07080 K07080; uncharacterized protein D BOQ54_03005 C4-dicarboxylate ABC transporter substrate-binding protein K07080 K07080; uncharacterized protein D BOQ54_06865 hypothetical protein K07090 K07090; uncharacterized protein D BOQ54_16805 hypothetical protein K07090 K07090; uncharacterized protein D BOQ54_13930 hypothetical protein K07090 K07090; uncharacterized protein D BOQ54_14425 hypothetical protein K07090 K07090; uncharacterized protein D BOQ54_15860 permease K07090 K07090; uncharacterized protein D BOQ54_17085 hypothetical protein K07090 K07090; uncharacterized protein D BOQ54_04255 permease K07090 K07090; uncharacterized protein D BOQ54_08980 dTDP-glucose 4,6-dehydratase K07093 K07093; uncharacterized protein D BOQ54_06205 metallophosphoesterase K07098 K07098; uncharacterized protein D BOQ54_18810 hypothetical protein K07112 K07112; uncharacterized protein D BOQ54_18815 permease K07112 K07112; uncharacterized protein D BOQ54_15810 ammonia monooxygenase K07120 K07120; uncharacterized protein D BOQ54_13860 hypothetical protein K07126 K07126; uncharacterized protein D BOQ54_01620 peptidase S16 K07157 K07157; uncharacterized protein D BOQ54_11860 VWA domain-containing protein K07161 K07161; uncharacterized protein D BOQ54_11630 membrane protein insertion efficiency factor YidD K08998 K08998; uncharacterized protein D BOQ54_09855 hypothetical protein K09005 K09005; uncharacterized protein D BOQ54_12985 glutamyl-tRNA amidotransferase K09117 K09117; uncharacterized protein D BOQ54_02020 hypothetical protein K09131 K09131; uncharacterized protein D BOQ54_14480 hypothetical protein K09137 K09137; uncharacterized protein D BOQ54_06510 hypothetical protein K09160 K09160; uncharacterized protein D BOQ54_11890 carbon monoxide dehydrogenase K09386 K09386; uncharacterized protein D BOQ54_00675 cupin K09705 K09705; uncharacterized protein D BOQ54_00415 hypothetical protein K09740 K09740; uncharacterized protein D BOQ54_07445 DUF378 domain-containing protein K09779 K09779; uncharacterized protein D BOQ54_12900 hypothetical protein K09786 K09786; uncharacterized protein D BOQ54_09785 hypothetical protein K09790 K09790; uncharacterized protein D BOQ54_01615 hypothetical protein K09791 K09791; uncharacterized protein D BOQ54_14115 hypothetical protein K09795 K09795; uncharacterized protein D BOQ54_03980 hypothetical protein K09798 K09798; uncharacterized protein D BOQ54_07255 hypothetical protein K09807 K09807; uncharacterized protein D BOQ54_07180 DNA gyrase inhibitor YacG K09862 K09862; uncharacterized protein D BOQ54_10675 GNAT family N-acetyltransferase K09919 K09919; uncharacterized protein D BOQ54_13080 hypothetical protein K09922 K09922; uncharacterized protein D BOQ54_07020 hypothetical protein K09924 K09924; uncharacterized protein D BOQ54_17460 cytoplasmic protein K09927 K09927; uncharacterized protein D BOQ54_12490 hypothetical protein K09937 K09937; uncharacterized protein D BOQ54_18315 hypothetical protein K09945 K09945; uncharacterized protein D BOQ54_14025 alkaline phosphatase K09948 K09948; uncharacterized protein D BOQ54_14380 hypothetical protein K09957 K09957; uncharacterized protein D BOQ54_17155 acetaldehyde dehydrogenase K09959 K09959; uncharacterized protein D BOQ54_10780 HutD-family protein K09975 K09975; uncharacterized protein D BOQ54_10565 hypothetical protein K09982 K09982; uncharacterized protein D BOQ54_12525 Stringent starvation protein B K09985 K09985; uncharacterized protein D BOQ54_13295 hypothetical protein K09986 K09986; uncharacterized protein D BOQ54_13920 cytoplasmic protein K09987 K09987; uncharacterized protein D BOQ54_12115 VWA domain-containing protein K09989 K09989; uncharacterized protein D BOQ54_08750 hypothetical protein K09991 K09991; uncharacterized protein D BOQ54_04060 hypothetical protein K07807 K07807; uncharacterized protein D BOQ54_13015 nucleoside-diphosphate sugar epimerase K07276 K07276; uncharacterized protein D BOQ54_15960 DNA-binding protein K07742 ylxR; uncharacterized protein ! #
#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: May 26, 2024