+E Transcription factors KO #

  Transcription Factors - Chelatococcus daeguensis

% ! AEukaryotic type B Basic leucine zipper (bZIP) C AP-1(-like) components, Jun C AP-1(-like) components, Fos C AP-1(-like) components, Maf C AP-1(-like) components, NF-E2 C AP-1(-like) components, Fungal regulators C AP-1(-like) components, CRE-BP/ATF C CREB C C/EBP-like factors C bZIP/PAR C Plant bZIP factors C ZIP only B Basic helix-loop-helix (bHLH) C Ubiquitous (class A) factors C Myogenic transcription factors C Achaete-Scute C Tal/Twist/Atonal/Hen, Lymphoid factors C Tal/Twist/Atonal/Hen, Mesodermal Twist-like factors C Tal/Twist/Atonal/Hen, HEN C Tal/Twist/Atonal/Hen, Mesp C Tal/Twist/Atonal/Hen, Atonal C Tal/Twist/Atonal/Hen, Pancreatic factors C Hairy, Hairy/E(SPL) C Hairy, Fungal regulators C Factors with PAS domain C Yabby C INO C HLH domain only B Basic helix-loop-helix/leucine zipper (bHLH-ZIP) C Ubiquitous bHLH-ZIP factors C Cell cycle controlling factors, Myc C Cell cycle controlling factors, Mad/Max C Other bHLH-ZIP factors B Other basic domains C NF-1 C RF-X C AP-2 (bHSH) B Zinc finger C Cys4 thyroid hormone receptor-like C Cys4 hepatocyte nuclear factor 4-like C Cys4 estrogen receptor-like C Cys4 nerve growth factor IB-like C Cys4 Fushi tarazu-F1-like C Cys4 germ cell nuclear factor C Cys4 Knirps/DAX1-like C Cys4 GATA-factors C Cys2His2 SP/KLF family and related proteins C Cys2His2 GLI-like C Cys2His2 Snail C Cys2His2 BTB-ZF factors C Cys2His2 BED C Cys2His2 PRDM C Cys2His2 metabolic regulators in fungi C Cys2His2 others C Cys2HisCys zinc factors C Cys3His zinc factors C Cys2CysHis zinc factors C CXXC CpG-binding proteins C Cys6 metabolic regulators in fungi C Other zinc fingers B Helix-turn-helix C Homeo domain ANTP: HOXL C Homeo domain ANTP: NKL C Homeo domain Paired-related C Homeo domain LIM C Homeo domain POU C Homeo domain SINE C Homeo domain ZF C Homeo domain CUT C Homeo domain PROS C Homeo domain TALE C Homeo domain other C Fork head/winged helix developmental regulators C Fork head/winged helix tissue-specific regulators C Fork head/winged helix cell cycle-controlling factors, E2F C Fork head/winged helix cell cycle-controlling factors, DP C Fork head/winged helix other regulators C Heat shock factors C Tryptophan clusters Myb, Myb-factors C Tryptophan clusters Myb, Myb-like factors C Tryptophan clusters Ets-type C Tryptophan clusters interferon-regulating factors C TEA domain C ARID B beta-Scaffold factors with minor groove contacts C RHR (Rel homology region) Rel/Ankyrin C RHR (Rel homology region) Ankyrin only C RHR (Rel homology region) NF-AT C STAT C p53 C MADS-box regulators of differentiation, MEF-2 C MADS-box regulators of differentiation, Homeotic genes C MADS-box regulators of differentiation, Yeast regulators C MADS-box responders to external signals C SAND domain-containing proteins C TATA-binding proteins C HMG SOX C HMG TCF-1 C HMG2-related C UBF C Other HMG box factors C Heteromeric CCAAT factors C Grainyhead C Cold-shock domain factors, DbpA-like C Cold-shock domain factors, YB-1/DbpB-like C Cold-shock domain factors, FRG Y2-like C Runt C MYRF B Other transcription factors C HMGI(Y) C NUPR E Line #4 C Pocket domain Rb C Pocket domain CBP C T-box C DMRT C LRRFIP C TCP C AP2/ERF C WRKY C LOB C GRAS C Copper-fist proteins fungal regulators C Others # AProkaryotic type B Helix-turn-helix C AraC family D BOQ54_18945 AraC family transcriptional regulator K18954 pobR; AraC family transcriptional regulator, transcriptional activator of pobA D BOQ54_12130 AraC family transcriptional regulator K13652 K13652; AraC family transcriptional regulator D BOQ54_12155 hypothetical protein K13652 K13652; AraC family transcriptional regulator D BOQ54_03850 bifunctional transcriptional activator/DNA repair enzyme protein Ada K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D BOQ54_16675 6-O-methylguanine DNA methyltransferase K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] C LysR family D BOQ54_18540 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BOQ54_17850 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BOQ54_06815 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BOQ54_01225 LysR family transcriptional regulator K03566 gcvA; LysR family transcriptional regulator, glycine cleavage system transcriptional activator D BOQ54_18950 pca operon transcription factor PcaQ K02623 pcaQ; LysR family transcriptional regulator, pca operon transcriptional activator D BOQ54_07875 LysR family transcriptional regulator K04761 oxyR; LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator D BOQ54_18320 LysR family transcriptional regulator K17850 ampR; LysR family transcriptional regulator, regulator of gene expression of beta-lactamase C DeoR family D BOQ54_01795 DeoR family transcriptional regulator K02444 glpR; DeoR family transcriptional regulator, glycerol-3-phosphate regulon repressor C LacI family D BOQ54_17790 hypothetical protein K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BOQ54_07430 LacI family transcriptional regulator K02529 galR; LacI family transcriptional regulator, galactose operon repressor D BOQ54_06785 LacI family transcriptional regulator K05499 cytR; LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG D BOQ54_18500 LacI family transcriptional regulator K03435 fruR1; LacI family transcriptional regulator, fructose operon transcriptional repressor D BOQ54_06760 LacI family transcriptional regulator K06145 gntR; LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor C GntR family D BOQ54_10885 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BOQ54_07420 phosphonate metabolism transcriptional regulator PhnF K02043 phnF; GntR family transcriptional regulator, phosphonate transport system regulatory protein D BOQ54_10740 histidine utilization repressor K05836 hutC; GntR family transcriptional regulator, histidine utilization repressor D BOQ54_15485 GntR family transcriptional regulator K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BOQ54_17695 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex D BOQ54_18655 hypothetical protein K05799 pdhR; GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex C TetR/AcrR family D BOQ54_18125 TetR family transcriptional regulator K23777 cecR; TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity C Lrp/AsnC family D BOQ54_07900 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_01865 ArsR family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_00130 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_12090 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_04240 AsnC family transcriptional regulator K03719 lrp; Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein D BOQ54_17575 AsnC family transcriptional regulator K15782 doeX; Lrp/AsnC family transcriptional regulator, regulator of ectoine-degradation genes D BOQ54_09485 ArsR family transcriptional regulator K05800 decR; Lrp/AsnC family transcriptional regulator, cysteine-sensing transcriptional activator C LuxR family D BOQ54_04510 hypothetical protein K19732 traR; LuxR family transcriptional regulator, activator of conjugal transfer of Ti plasmids C MarR family D BOQ54_00485 MarR family transcriptional regulator K06075 slyA; MarR family transcriptional regulator, transcriptional regulator for hemolysin D BOQ54_00450 MarR family transcriptional regulator K22296 nicR; MarR family transcriptional regulator, lower aerobic nicotinate degradation pathway regulator D BOQ54_18395 MarR family transcriptional regulator K25883 expG; MarR family transcriptional regulator, exopolysaccharide II synthesis transcriptional activator C MerR family D BOQ54_01815 Cu(I)-responsive transcriptional regulator K19591 cueR; MerR family transcriptional regulator, copper efflux regulator D BOQ54_01420 redox-sensitive transcriptional activator SoxR K13639 soxR; MerR family transcriptional regulator, redox-sensitive transcriptional activator SoxR C Fur family D BOQ54_00920 transcriptional repressor K03711 fur; Fur family transcriptional regulator, ferric uptake regulator D BOQ54_01465 transcriptional repressor K09823 zur; Fur family transcriptional regulator, zinc uptake regulator D BOQ54_04150 transcriptional repressor K09826 irr; Fur family transcriptional regulator, iron response regulator D BOQ54_00190 transcriptional repressor K09826 irr; Fur family transcriptional regulator, iron response regulator C IclR family D BOQ54_04110 IclR family transcriptional regulator K13641 iclR; IclR family transcriptional regulator, acetate operon repressor C CRP/FNR family D BOQ54_14210 Crp/Fnr family transcriptional regulator K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BOQ54_07675 cyclic nucleotide-binding protein K10914 crp; CRP/FNR family transcriptional regulator, cyclic AMP receptor protein D BOQ54_06350 transcriptional regulator K15861 fixK; CRP/FNR family transcriptional regulator, nitrogen fixation regulation protein D BOQ54_17965 Crp/Fnr family transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator D BOQ54_18015 Crp/Fnr family transcriptional regulator K21564 nnrR; CRP/FNR family transcriptional regulator, nitrogen oxide reductase regulator C Rrf2 family D BOQ54_18580 BadM/Rrf2 family transcriptional regulator K13771 nsrR; Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor C ArsR family D BOQ54_17110 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BOQ54_03340 transcriptional regulator K03892 arsR; ArsR family transcriptional regulator, arsenate/arsenite/antimonite-responsive transcriptional repressor D BOQ54_18790 transcriptional regulator K22042 hlyU; ArsR family transcriptional regulator, virulence genes transcriptional regulator C XRE family D BOQ54_12230 XRE family transcriptional regulator K23779 sutR; XRE family transcriptional regulator, regulator of sulfur utilization C PadR family C Other families D BOQ54_02985 transcriptional regulator, RpiR family protein K19337 hexR; RpiR family transcriptional regulator, carbohydrate utilization regulator D BOQ54_09125 biotin--[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] D BOQ54_15645 transcriptional regulator K03557 fis; Fis family transcriptional regulator, factor for inversion stimulation protein D BOQ54_17190 sigma-54-dependent Fis family transcriptional regulator K21405 acoR; sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR D BOQ54_12280 LysR family transcriptional regulator K02019 modE; molybdate transport system regulatory protein D BOQ54_08595 transcriptional regulator K07727 K07727; putative transcriptional regulator B Ribbon-helix-helix C CopG family C Other families D BOQ54_01860 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88] B Other transcription factors C BglG family C Others D BOQ54_17350 4Fe-4S binding protein K19339 nosR; NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator D BOQ54_02485 BolA family transcriptional regulator K05527 bolA; BolA family transcriptional regulator, general stress-responsive regulator D BOQ54_17800 plasmid partitioning protein RepB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_04600 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_00740 chromosome partitioning protein ParB K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_03120 hypothetical protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein D BOQ54_02540 CarD family transcriptional regulator K07736 carD; CarD family transcriptional regulator, regulator of rRNA transcription D BOQ54_00120 hrcA; heat-inducible transcriptional repressor HrcA K03705 hrcA; heat-inducible transcriptional repressor D BOQ54_02570 nucleoside-diphosphate kinase K06140 rnk; regulator of nucleoside diphosphate kinase D BOQ54_07190 transcriptional regulator K07734 paiB; transcriptional regulator D BOQ54_05800 hypothetical protein K07735 algH; putative transcriptional regulator D BOQ54_12040 RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor D BOQ54_03375 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor D BOQ54_08100 transcriptional regulator NrdR K07738 nrdR; transcriptional repressor NrdR D BOQ54_12710 division/cell wall cluster transcriptional repressor MraZ K03925 mraZ; transcriptional regulator MraZ D BOQ54_08765 exopolysaccharide biosynthesis protein K25885 exoR; exopolysaccharide production negative regulator ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: October 29, 2024 #
Classification taken and modified from TRANSFAC 7.0