+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Candida dubliniensis</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        CD36_87590 ABD1; RNA (guanine-N7-) methyltransferase, putative	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        CD36_31500 Cdc28 homologue, putative	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        CD36_06280 serine/threonine protein kinase (stpk), putative	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        CD36_45420 CGT1; GTP-RNA guanylyltransferase, putative	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
E        CD36_27010 CET1; mRNA 5'-triphosphatase, putative	K01098 CET1; polynucleotide 5'-triphosphatase [EC:3.6.1.74] 
D      Cap binding complex
E        CD36_07930 transcriptional activator, putative	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        CD36_04540 RNA binding protein, putative	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        CD36_83820 cleavage and polyadenylation factor CFI component, putative	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        CD36_62050 mRNA 3' end processing factor, putative	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        CD36_42310 subunit of the mRNA cleavage and polyadenylation factor, putative	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        CD36_83210 subunit of mRNA cleavage and polyadenylation factor, putative	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        CD36_20620 cleavage and polyadenylation factor specificity complex subunit, putative	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        CD36_20130 mRNA 3'-end-processing protein, putative	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        CD36_52260 pre-mRNA polyadenylation factor, putative	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        CD36_41560 subunit of CPF (cleavage and polyadenylation factor), putative	K15541 MPE1; protein MPE1 
E        CD36_10400 hypothetical protein	K15542 PFS2; polyadenylation factor subunit 2 
E        CD36_07030 COMPASS-complex component, putative	K14962 WDR82; COMPASS component SWD2 
E        CD36_33270 serine/threonine-protein phosphatase, putative	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CD36_31870 serine/threonine-protein phosphatase, putative	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CD36_64340 serine/threonine-protein phosphatase, putative	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CD36_28340 RNA polymerase II subunit A C-terminal domain phosphatase, putative	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        CD36_01690 cleavage and polyadenylation factor I (CF I) component, putative	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        CD36_34390 RNA Pol II transcript 3' end formation complex subunit, putative	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        CD36_16930 mRNA 3'-end-processing protein, putative	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        CD36_70720 cleavage factor II (CF II) component, putative	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        CD36_33130 small nuclear ribonucleoprotein-associated protein, putative	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        CD36_50840 small nuclear ribonucleoprotein, putative	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        CD36_60460 small nuclear ribonucleoprotein E (snRNP-E), putative	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        CD36_52900 small nuclear ribonucleoprotein, putative	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        CD36_18520 small nuclear ribonucleoprotein G (snRNP-G), putative	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        CD36_83210 subunit of mRNA cleavage and polyadenylation factor, putative	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        CD36_20620 cleavage and polyadenylation factor specificity complex subunit, putative	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        CD36_01690 cleavage and polyadenylation factor I (CF I) component, putative	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        CD36_34390 RNA Pol II transcript 3' end formation complex subunit, putative	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        CD36_70720 cleavage factor II (CF II) component, putative	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        CD36_54250 RNA polymerase II elongation factor, putative	K15171 SUPT4H1; transcription elongation factor SPT4 
E        CD36_16340 chromatin elongation factor, putative	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        CD36_16510 N6-adenosine-methyltransferase, putative	K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] 
E        CD36_27290 karyogamy protein kar4 homologue, putative	K23960 METTL14; mRNA m6A methyltransferase non-catalytic subunit 
D      Poly(A) addition factors
E        CD36_51580 PAP1; poly(A) polymerase, putative	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
D      CD36_44320 Kin17 orthologue, putative	K13102 KIN; DNA/RNA-binding protein KIN17 
D      CD36_01350 nuclear polyadenylated RNA-binding protein, putative	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        CD36_84550 RNA-binding RNA annealing protein, putative	K12881 THOC4; THO complex subunit 4 
E        CD36_09580 RNA-binding protein, putative	K12881 THOC4; THO complex subunit 4 
E        CD36_40290 ATP-dependent RNA helicase, putative	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        CD36_05320 ATP-dependent RNA helicase, putative	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        CD36_51020 PWI domain mRNA processing protein, putative	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        CD36_19430 protein RLR1 homologue, putative	K12879 THOC2; THO complex subunit 2 
E        CD36_51440 WD-40 repeat domain-containing protein, putative	K12880 THOC3; THO complex subunit 3 
E        CD36_84550 RNA-binding RNA annealing protein, putative	K12881 THOC4; THO complex subunit 4 
E        CD36_09580 RNA-binding protein, putative	K12881 THOC4; THO complex subunit 4 
E        CD36_05120 hypothetical protein	K18712 HPR1; THO complex subunit HPR1 
D      TREX-2 complex
E        CD36_11160 Nuclear pore-associated, member of a complex involved in transcription and mRNA export, putative	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        CD36_46350 26S proteasome complex subunit, putative	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        CD36_86980 component of the SAGA histone acetylase complex, putative	K11368 ENY2; enhancer of yellow 2 transcription factor 
E        CD36_29310 cell division control protein, putative	K16466 CETN3; centrin-3 
E        CD36_17240 leucine permease transcriptional regulator, putative	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        CD36_41050 myosin-like protein, putative	K09291 TPR; nucleoprotein TPR 
E        CD36_64760 poly(A) RNA export protein, putative	K14298 RAE1; mRNA export factor 
E        CD36_83130 nuclear pore complex subunit, putative	K14004 SEC13; protein transport protein SEC13 
E        CD36_84340 nuclear pore complex subunit, putative	K14304 NUP85; nuclear pore complex protein Nup85 
E        CD36_27580 nuclear pore protein, putative	K14308 NUP54; nuclear pore complex protein Nup54 
E        CD36_18030 nuclear pore protein, putative	K14306 NUP62; nuclear pore complex protein Nup62 
E        CD36_16100 96 kDa nucleoporin-interacting component, putative	K14309 NUP93; nuclear pore complex protein Nup93 
E        CD36_86410 nuclear pore complex subunit, putative	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        CD36_43540 nuclear pore complex protein, putative	K14301 NUP107; nuclear pore complex protein Nup107 
E        CD36_19720 nuclear pore protein, putative	K14300 NUP133; nuclear pore complex protein Nup133 
E        CD36_08910 nuclear pore protein, putative	K14311 NUP188; nuclear pore complex protein Nup188 
E        CD36_05340 nuclear pore protein NUP170, putative	K14312 NUP155; nuclear pore complex protein Nup155 
E        CD36_41570 subunit of the nuclear pore complex (NPC), putaitve	K14303 NUP160; nuclear pore complex protein Nup160 
E        CD36_25270 nuclear pore protein, putative	K14310 NUP205; nuclear pore complex protein Nup205 
E        CD36_12540 nuclear pore protein, putative	K14307 NUPL1; nucleoporin p58/p45 
E        CD36_60490 nuclear envelope protein, putative	K14315 NDC1; nucleoporin NDC1 
E        CD36_22180 nuclear pore protein, putative	K14299 SEH1; nucleoporin SEH1 
E        CD36_87650 nucleoporin, putative	K18715 NUP159; nucleoporin NUP159 
E        CD36_84660 nucleoporin, putative	K18716 NUP42; nucleoporin NUP42 
E        CD36_43590 nuclear pore complex subunit, putative	K18717 ASM4; nucleoporin ASM4 
E        CD36_45840 subunit of the nuclear pore complex, putative	K18718 NUP60; nucleoporin NUP60 
E        CD36_64420 nuclear pore complex subunit, putative	K18719 NUP82; nucleoporin NUP82 
E        CD36_44840 nuclear pore protein, putative	K18720 NUP145; nucleoporin NUP145 
E        CD36_63480 component of the nuclear pore complex, putative	K18721 NUP1; nucleoporin NUP1 
E        CD36_53300 RanGTP-binding protein, putative	K18722 NUP2; nucleoporin NUP2 
E        CD36_29310 cell division control protein, putative	K16466 CETN3; centrin-3 
E        CD36_21950 RNA export factor, putative	K18723 GLE1; nucleoporin GLE1 
E        CD36_29340 mRNA export factor, putative	K14284 NXF; nuclear RNA export factor 
E        CD36_24705 mRNA transport regulator MTR2 homologue, putative	K14543 MTR2; mRNA transport regulator MTR2 
E        CD36_19300 nuclear pore complex component, putative	K18724 POM34; nucleoporin POM34 
E        CD36_15440 nuclear pore protein, putative	K18725 POM152; nucleoporin POM152 
E        CD36_09900 hypothetical protein	K14017 SNL1; HSP70 co-chaperone SNL1 
D      Ran-mediated transport factors
E        CD36_20700 GTP-binding nuclear protein, Ran family member, putative	K07936 RAN; GTP-binding nuclear protein Ran 
E        CD36_43640 UBX domain-containing protein, putative	K18726 FAF2; FAS-associated factor 2 
E        CD36_10120 CDC48 ATPase, putative	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        CD36_25630 chromosome region maintenance protein, putative	K14290 XPO1; exportin-1 
E        CD36_81980 GTPase activating protein, putative	K14319 RANGAP1; Ran GTPase-activating protein 1 
E        CD36_13250 hypothetical protein	K14651 TAF15; transcription initiation factor TFIID subunit 15 
D      eIF4F and regulatory proteins
E        CD36_35334 eukaryotic translation initiation factor 4e, putative	K03259 EIF4E; translation initiation factor 4E 
E        CD36_01250 ATP-dependent RNA helicase eif4A, putative	K03257 EIF4A; translation initiation factor 4A 
E        CD36_22930 eIF-4F p150 homologue, putative	K03260 EIF4G; translation initiation factor 4G 
E        CD36_61720 eukaryotic translation initiation factor 4B (eIF-4B), putative	K03258 EIF4B; translation initiation factor 4B 
E        CD36_86030 ATP-dependent DEAD-box RNA helicase, putative	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CD36_46150 hypothetical protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        CD36_03170 ARS consensus binding protein, putative	K13126 PABPC; polyadenylate-binding protein 
E        CD36_34160 RNA helicase, putative	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        CD36_54520 RNA helicase, putative	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        CD36_45710 translation machinery-associated protein, putative	K07575 MCTS; malignant T-cell-amplified sequence 
E        CD36_40820 translation machinery-associated protein, putative	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        CD36_85120 cleavage and polyadenylation factor CF I component, putative	K14411 MSI; RNA-binding protein Musashi 
E        CD36_73920 GTP binding protein, putative	K14416 HBS1; elongation factor 1 alpha-like protein 
E        CD36_28180 RNA-binding protein required for meiotic cell division, putative	K06965 PELO; protein pelota 
E        CD36_70460 cytoplasmic RNA-binding protein, putative	K14396 PABPN1; polyadenylate-binding protein 2 
E        CD36_23730 cytoplasmic RNA-binding protein, putative	K14396 PABPN1; polyadenylate-binding protein 2 
E        CD36_81740 ATP-dependent RNA helicase, putative	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        CD36_45900 component of the spliceosome complex, putative	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        CD36_23220 protein THO1 homologue, putative	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        CD36_72430 nucleocytoplasmic trafficking regulator of macromolecules, putative	K11493 RCC1; regulator of chromosome condensation 
E        CD36_05980 hypothetical protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        CD36_19610 eukaryotic peptide chain release factor subunit, putative	K03265 ETF1; peptide chain release factor subunit 1 
E        CD36_23800 eukaryotic peptide chain release factor GTP-binding subunit, putative	K03267 ERF3; peptide chain release factor subunit 3 
E        CD36_50510 ATP-dependent RNA helicase, putative	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        CD36_18280 nonsense-mediated mrna decay protein, putative	K14327 UPF2; regulator of nonsense transcripts 2 
E        CD36_11150 hypothetical protein	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        CD36_81510 serine/threonine-protein phosphatase type 2A, catalytic subunit, putative	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        CD36_86870 protein phosphatase regulatory subunit, putative	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        CD36_16450 cell division control protein 55, putative	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        CD36_20780 serine/threonine-protein phosphatase B-type regulatory subunit, putative	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        CD36_46150 hypothetical protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
C    Factors involved in mRNA localization
D      Cargo complex
E        CD36_63970 uncharacterized protein YBR130C orthologue, putative	K18737 SHE3; SWI5-dependent HO expression protein 3 
E        CD36_19660 pumilio-family RNA binding domain-containing protein	K14844 PUF6; pumilio homology domain family member 6 
E        CD36_63610 RNA-binding protein, putative	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        CD36_64460 RNA binding protein, putative	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        CD36_12770 myosin V myo2, putative	K10357 MYO5; myosin V 
E        CD36_24700 transcriptional regulatory protein, putative	K18658 ASH1; transcriptional regulatory protein ASH1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        CD36_07890 translation elongation factor 1-alpha, putative	K03231 EEF1A; elongation factor 1-alpha 
E        CD36_22520 ef-1-alpha, putative	K03231 EEF1A; elongation factor 1-alpha 
E        CD36_53070 elongation factor 1 gamma domain-containing protein	K03233 EEF1G; elongation factor 1-gamma 
E        CD36_85940 elongation factor 1 gamma domain-containing protein	K03233 EEF1G; elongation factor 1-gamma 
E        CD36_53060 translation elongation factor, putative	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        CD36_54350 cell wall biogenesis protein phosphatase, putative	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        CD36_12450 5'-3' exoribonuclease, DNA strand transfer protein beta, putative	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        CD36_45830 Argonaute-like protein, putative	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        CD36_35334 eukaryotic translation initiation factor 4e, putative	K03259 EIF4E; translation initiation factor 4E 
E        CD36_50510 ATP-dependent RNA helicase, putative	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        CD36_86030 ATP-dependent DEAD-box RNA helicase, putative	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CD36_06610 ATP-dependent RNA helicase, putative	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        CD36_06190 clathrin-mediated transport effector protein, putative	K18749 LSM14; protein LSM14 
E        CD36_19760 importin beta-2 subunit, putative	K18752 TNPO1; transportin-1 
E        CD36_09610 cAMP-dependent protei kinase catalytic subunit, putative	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        CD36_21480 CaTPK2; Catalytic subunit of cAMP-dependent protein kinase (PKA), putative	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        CD36_72920 polysome-associated RNA binding protein, putative	K18757 LARP1; la-related protein 1 
E        CD36_86750 polysome-associated RNA binding protein, putative	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        CD36_33760 mRNA decapping enzyme subunit, putative	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        CD36_05150 mRNA decapping enzyme Dcp1, putative	K12612 DCP1; mRNA-decapping enzyme subunit 1 
E        CD36_29590 RNA processing complex subunit, putative	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        CD36_32960 U6 snRNA-associated Sm-like protein, putative	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        CD36_72250 U6 snRNA-associated Sm-like protein, putative	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        CD36_25280 U6 snRNA-associated Sm-like protein Lsm6, putative	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        CD36_53180 U6 snRNA-associated Sm-like protein, putative	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        CD36_52600 U6 snRNA-associated Sm-like protein, putative	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        CD36_12770 myosin V myo2, putative	K10357 MYO5; myosin V 
E        CD36_34530 TUB1; tubulin alpha chain, putative	K07374 TUBA; tubulin alpha 
E        CD36_64860 subunit of the CCR4-NOT transcriptional complex, putative	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        CD36_00270 [CCR4-NOT transcription complex] NOT2 family component, putative	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        CD36_07820 general negative regulator of transcription, CCR4-NOT complex subunit, putative	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        CD36_16020 CaNOT31; mRNA deadenylase and CCR4-NOT complex subunit Not3p, putative	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        CD36_28580 NOT4; general negative regulator of transcription subunit, putative	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        CD36_07750 CCR4-NOT complex subunit, putative	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        CD36_64190 RNase of the DEDD superfamily, putative	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        CD36_08560 pab1p-dependent poly(A)-nuclease, putative	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        CD36_54770 poly(A)-nuclease subunit, putative	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        CD36_44510 topoisomerase II-associated deadenylation-dependent mRNA-decapping factor, putative	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        CD36_16970 hypothetical protein	K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
E        CD36_44850 enhancer of mRNA-decapping protein, putative	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        CD36_18280 nonsense-mediated mrna decay protein, putative	K14327 UPF2; regulator of nonsense transcripts 2 
E        CD36_11150 hypothetical protein	K14328 UPF3; regulator of nonsense transcripts 3 
E        CD36_01440 DNA-directed RNA polymerase II 19 kda polypeptide, putative	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
E        CD36_51030 uncharacterized YTH domain-containing protein, putative	K20102 YTHDF; YTH domain-containing family protein 
D      Stress granule specific factors
E        CD36_85810 poly uridylate-binding protein, putative	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        CD36_03170 ARS consensus binding protein, putative	K13126 PABPC; polyadenylate-binding protein 
E        CD36_02290 eukaryotic translation initiation factor eIF-2A, putative	K15026 EIF2A; translation initiation factor 2A 
E        CD36_71280 subunit of the core complex of translation initiation factor 3 (eIF3), putative	K03253 EIF3B; translation initiation factor 3 subunit B 
E        CD36_01250 ATP-dependent RNA helicase eif4A, putative	K03257 EIF4A; translation initiation factor 4A 
E        CD36_05320 ATP-dependent RNA helicase, putative	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        CD36_61720 eukaryotic translation initiation factor 4B (eIF-4B), putative	K03258 EIF4B; translation initiation factor 4B 
E        CD36_22930 eIF-4F p150 homologue, putative	K03260 EIF4G; translation initiation factor 4G 
E        CD36_71100 WD repeat protein (G-beta like protein) involved in translation regulation, putative	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        CD36_29340 mRNA export factor, putative	K14284 NXF; nuclear RNA export factor 
E        CD36_26960 HDA1; histone deacetylase, putative	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        CD36_05150 mRNA decapping enzyme Dcp1, putative	K12612 DCP1; mRNA-decapping enzyme subunit 1 
E        CD36_33760 mRNA decapping enzyme subunit, putative	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        CD36_06610 ATP-dependent RNA helicase, putative	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        CD36_16970 hypothetical protein	K18759 EDC1_2; enhancer of mRNA-decapping protein 1/2 
E        CD36_44850 enhancer of mRNA-decapping protein, putative	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        CD36_44510 topoisomerase II-associated deadenylation-dependent mRNA-decapping factor, putative	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        CD36_29590 RNA processing complex subunit, putative	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        CD36_32960 U6 snRNA-associated Sm-like protein, putative	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        CD36_72250 U6 snRNA-associated Sm-like protein, putative	K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4 
E        CD36_25280 U6 snRNA-associated Sm-like protein Lsm6, putative	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        CD36_53180 U6 snRNA-associated Sm-like protein, putative	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        CD36_52600 U6 snRNA-associated Sm-like protein, putative	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        CD36_12450 5'-3' exoribonuclease, DNA strand transfer protein beta, putative	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        CD36_41070 5'-3' exoribonuclease, putative	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        CD36_71050 non-essential hydrolase involved in mRNA decapping, putative	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        CD36_03570 3'-5' exoribonuclease, exosome subunit, putative	K07573 CSL4; exosome complex component CSL4 
E        CD36_43480 exosome complex exonuclease, putative	K03679 RRP4; exosome complex component RRP4 
E        CD36_01090 exosome complex component RRP40	K03681 RRP40; exosome complex component RRP40 
E        CD36_41980 3'-to-5' phosphorolytic exoribonuclease, putative	K11600 RRP41; exosome complex component RRP41 
E        CD36_20960 exosome 3->5 exonuclease complex component, rRNA processing, putative	K12590 RRP46; exosome complex component RRP46 
E        CD36_27500 exosome complex exonuclease, putative	K12587 MTR3; exosome complex component MTR3 
E        CD36_43580 exosome complex exonuclease rrp42 (ribosomal rna processing protein 42)	K12589 RRP42; exosome complex component RRP42 
E        CD36_06120 exosome component RRP43, putative	K12586 RRP43; exosome complex component RRP43 
E        CD36_23320 exosome complex exonuclease, putative	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        CD36_11570 exosome complex exonuclease subunit, putative	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        CD36_04770 exosome component 3'-5' exonuclease	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        CD36_07480 nuclear cofactor for exosome activity in the processing of stable RNAs, putative	K12592 C1D; exosome complex protein LRP1 
E        CD36_25870 hypothetical protein	K12594 MPP6; M-phase phosphoprotein 6, fungi type 
D      TRAMP complex
E        CD36_05090 topoisomerase 1-related protein TRF4, putative	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        CD36_09220 mRNA processing and export modulator, putative	K12597 AIR1_2; protein AIR1/2 
E        CD36_73050 DEAD-box ATP-dependent RNA helicase, putative	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        CD36_34160 RNA helicase, putative	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        CD36_09250 mediator of protection against dsRNA viruses, putative	K12600 SKI3; superkiller protein 3 
E        CD36_64410 antiviral protein Ski8 orthologue, putative	K12601 SKI8; superkiller protein 8 
D      Ccr4-NOT complex
E        CD36_07750 CCR4-NOT complex subunit, putative	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        CD36_64860 subunit of the CCR4-NOT transcriptional complex, putative	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        CD36_00270 [CCR4-NOT transcription complex] NOT2 family component, putative	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        CD36_07820 general negative regulator of transcription, CCR4-NOT complex subunit, putative	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        CD36_16020 CaNOT31; mRNA deadenylase and CCR4-NOT complex subunit Not3p, putative	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        CD36_28580 NOT4; general negative regulator of transcription subunit, putative	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        CD36_64190 RNase of the DEDD superfamily, putative	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        CD36_73530 CCR4/NOT1 complex homologue conserved subunit, putative	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        CD36_07940 hypothetical protein	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        CD36_11180 CCR4-NOT complex (transcriptional regulatory complex involved in mRNA initiation, elongation, and degradation) subunit, putative	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        CD36_08560 pab1p-dependent poly(A)-nuclease, putative	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        CD36_54770 poly(A)-nuclease subunit, putative	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        CD36_71050 non-essential hydrolase involved in mRNA decapping, putative	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        CD36_02650 hypothetical protein	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        CD36_44470 RNAse III, putative	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        CD36_16430 Oligoribonuclease, mitochondrial precursor, putative	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        CD36_08010 2-phospho-D-glycerate hydro-lyase, putative	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        CD36_54420 6-phosphofructokinase subunit alpha, putative	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
E        CD36_71630 6-phosphofructokinase beta subunit, putative	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        CD36_73680 endonuclease SceI kda subunit, putative	K04043 dnaK; molecular chaperone DnaK 
E        CD36_21650 Heat shock protein	K04043 dnaK; molecular chaperone DnaK 
E        CD36_31990 heat shock protein 60, mitochondrial precursor, putative	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        CD36_43480 exosome complex exonuclease, putative	K03679 RRP4; exosome complex component RRP4 
E        CD36_03570 3'-5' exoribonuclease, exosome subunit, putative	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        CD36_41980 3'-to-5' phosphorolytic exoribonuclease, putative	K11600 RRP41; exosome complex component RRP41 
E        CD36_43580 exosome complex exonuclease rrp42 (ribosomal rna processing protein 42)	K12589 RRP42; exosome complex component RRP42 
D      Others
!
#<hr>
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#Last updated: April 25, 2024