+F Repair protein KO #

  DNA Repair and Recombination Proteins - Cyanobacterium endosymbiont of Epithemia clementina

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D P3F56_05955 FAD-binding domain-containing protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E P3F56_06735 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D P3F56_09765 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D P3F56_05955 FAD-binding domain-containing protein K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E P3F56_08065 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E P3F56_02155 DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E P3F56_06735 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E P3F56_03450 xth; exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E P3F56_00295 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E P3F56_02050 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E P3F56_06960 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I C NER (nucleotide excision repair) D GGR (global genome repair) factors E P3F56_04310 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A E P3F56_03220 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B E P3F56_05870 uvrC; excinuclease ABC subunit UvrC K03703 uvrC; excinuclease ABC subunit C E P3F56_07265 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P3F56_07680 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P3F56_06960 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F P3F56_01850 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F P3F56_01855 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F P3F56_08445 DNA-directed RNA polymerase subunit gamma K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F P3F56_02505 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F P3F56_00650 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F P3F56_00425 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E P3F56_07925 mutS; DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E P3F56_08995 endonuclease MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E P3F56_03030 mutL; DNA mismatch repair endonuclease MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E P3F56_02550 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E P3F56_04125 OB-fold nucleic acid binding domain-containing protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E P3F56_10095 dnaN; DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E P3F56_03430 holA; DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E P3F56_10115 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E P3F56_03870 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E P3F56_06960 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E P3F56_07265 ATP-dependent helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P3F56_07680 pcrA; DNA helicase PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E P3F56_06270 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E P3F56_01870 Dam family site-specific DNA-(adenine-N6)-methyltransferase K06223 dam; DNA adenine methylase [EC:2.1.1.72] E P3F56_09495 DNA adenine methylase K06223 dam; DNA adenine methylase [EC:2.1.1.72] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E P3F56_05630 recA; recombinase RecA K03553 recA; recombination protein RecA E P3F56_08090 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P3F56_04610 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P3F56_05645 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E P3F56_01115 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E P3F56_09720 sbcC; exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E P3F56_02005 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E P3F56_05630 recA; recombinase RecA K03553 recA; recombination protein RecA E P3F56_02740 radA; DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E P3F56_06055 recF; DNA replication/repair protein RecF K03629 recF; DNA replication and repair protein RecF E P3F56_05940 recG; ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E P3F56_00295 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E P3F56_02050 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E P3F56_02210 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E P3F56_04930 recR; recombination mediator RecR K06187 recR; recombination protein RecR E P3F56_08585 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E P3F56_08090 ruvA; Holliday junction branch migration protein RuvA K03550 ruvA; holliday junction DNA helicase RuvA E P3F56_04610 ruvB; Holliday junction branch migration DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E P3F56_05645 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E P3F56_09720 sbcC; exonuclease subunit SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E P3F56_02005 sbcD; exonuclease subunit SbcD K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F P3F56_02640 DNA topoisomerase 4 subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F P3F56_09000 gyrA; DNA topoisomerase (ATP-hydrolyzing) subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F P3F56_09005 gyrB; DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F P3F56_05195 topA; type I DNA topoisomerase K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F P3F56_03975 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F P3F56_06545 HU family DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F P3F56_00295 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F P3F56_02050 recJ; single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F P3F56_02210 recO; DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F P3F56_04930 recR; recombination mediator RecR K06187 recR; recombination protein RecR F P3F56_06960 ligA; NAD-dependent DNA ligase LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F P3F56_07810 recQ; DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F P3F56_04310 uvrA; excinuclease ABC subunit UvrA K03701 uvrA; excinuclease ABC subunit A F P3F56_03220 uvrB; excinuclease ABC subunit UvrB K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C Other SOS response factors D P3F56_05630 recA; recombinase RecA K03553 recA; recombination protein RecA D P3F56_04870 lexA; transcriptional repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D P3F56_08585 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D P3F56_06270 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D P3F56_04550 ATP-dependent DNA helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] C Modulation of nucleotide pools D P3F56_09765 dut; dUTP diphosphatase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D P3F56_04235 ribonucleoside-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D P3F56_04230 ribonucleotide-diphosphate reductase subunit beta K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024