+F Repair protein KO #

  DNA Repair and Recombination Proteins - Corynebacterium efficiens

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CE2837 putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CE0647 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CE1436 putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CE0119 putative 3-methylpurine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CE2528 conserved hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CE0289 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E CE0891 putative DNA helicase K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CE2585 putative mutator MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CE1799 putative dUTP nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CE2837 putative methylated-DNA--protein-cysteine S-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CE0647 deoxyribodipyrimidine photolyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D CE0143 hypothetical protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E CE1436 putative uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CE0119 putative 3-methylpurine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CE2528 conserved hypothetical protein K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CE2657 putative 3-methyladenine-DNA glycosylase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CE0144 putative DNA-3-methyladenine glycosidase K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E CE1975 putative DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CE2834 putative DNA-formamidopyrimidine glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CE0922 putative endonuclease K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E CE0289 putative endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CE2579 putative exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CE0689 putative exodeoxyribonuclease K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ D DNA ligase E CE1339 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CE1455 putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CE1507 putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CE1499 putative xcinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E CE1711 putative excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CE0930 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CE0794 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CE0791 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CE1455 putative DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CE1339 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CE0497 putative DNA-directed RNA polymerase beta chain K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CE0498 putative DNA-directed RNA polymerase beta' chain K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CE0572 putative DNA-directed RNA polymerase alpha chain K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CE1725 conserved hypothetical protein K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CE1034 putative transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E CE1078 putative exodeoxyribonuclease, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CE1077 putative exodeoxyribonuclease, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CE2029 putative DNA polymerase III alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CE1338 conserved hypothetical protein K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CE0003 putative DNA polymerase III beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CE2247 conserved hypothetical protein K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CE0311 DNA polymerase III delta' subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CE2015 putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CE1385 putative DNA polymerase III epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CE0214 putative DNA polymerase III K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E CE0209 putative DNA polymerase III gamma subunit K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CE1339 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CE0930 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CE0794 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CE0791 putative ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CE2819 putative single-strand binding protein K03111 ssb; single-strand DNA-binding protein E CE2350 putative single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CE1849 recA; recombination protein RecA K03553 recA; recombination protein RecA E CE1774 rubA; holliday junction DNA-helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CE1773 rubB; holliday junction DNA-helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CE1775 rubC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CE1722 conserved hypothetical protein K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E CE1849 recA; recombination protein RecA K03553 recA; recombination protein RecA E CE2524 putative DNA repair protein K04485 radA; DNA repair protein RadA/Sms E CE0004 putative DNA replication and repair protein RecF K03629 recF; DNA replication and repair protein RecF E CE1438 putative ATP-dependent DNA helicase recG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CE2684 conserved hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CE2183 conserved hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) E CE0211 putative recombination protein K06187 recR; recombination protein RecR E CE1548 putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CE1774 rubA; holliday junction DNA-helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CE1773 rubB; holliday junction DNA-helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CE1775 rubC; crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CE0015 putative DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CE0006 putative DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CE0307 putative DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CE2183 conserved hypothetical protein K03584 recO; DNA repair protein RecO (recombination protein O) F CE0211 putative recombination protein K06187 recR; recombination protein RecR F CE1339 putative DNA ligase K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F CE0968 putative ATP-dependent DNA helicase K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CE1507 putative excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CE1499 putative xcinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CE2040 putative DNA-damage-inducible protein P K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CE1849 recA; recombination protein RecA K03553 recA; recombination protein RecA D CE1823 putative SOS response repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CE1548 putative DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CE0628 conserved hypothetical protein K14161 imuB; protein ImuB D CE0632 putative DNA polymerase III alpha subunit K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CE2819 putative single-strand binding protein K03111 ssb; single-strand DNA-binding protein D CE2350 putative single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein D CE1848 putative regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D CE2415 putative ATP-dependent helicase K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CE0921 putative ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D CE2585 putative mutator MutT3 K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CE1429 conserved hypothetical protein K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D CE1552 conserved hypothetical protein K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D CE1799 putative dUTP nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CE2423 nrdE; ribonucleotide reductase alpha chain K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CE0879 putative ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] D CE2419 nrdF; ribonucleotide reductase beta chain K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D CE1876 putative exopolyphosphatase family protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: August 19, 2024