+E	Messenger RNA Biogenesis	KO
#<h2><a href="/kegg/brite.html"><img src="/Fig/bget/kegg3.gif" align="middle" border=0></a>&nbsp; Messenger RNA Biogenesis - Colletotrichum fioriniae</h2>
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A<b>Eukaryotic type</b>
B  mRNA processing factors
C    5' end processing
D      Capping factors
E        CFIO01_06340 mRNA capping enzyme	K00565 RNMT; mRNA (guanine-N7-)-methyltransferase [EC:2.1.1.56] 
E        CFIO01_06372 cell division control protein 2	K04563 CDC28; cyclin-dependent kinase [EC:2.7.11.22] 
E        CFIO01_10421 hypothetical protein	K02202 CDK7; cyclin-dependent kinase 7 [EC:2.7.11.22 2.7.11.23] 
E        CFIO01_10277 mRNA capping enzyme	K00987 CEG1; mRNA guanylyltransferase [EC:2.7.7.50] 
D      Cap binding complex
E        CFIO01_02452 hypothetical protein	K12882 NCBP1; nuclear cap-binding protein subunit 1 
E        CFIO01_03139 RNA recognition domain-containing protein	K12883 NCBP2; nuclear cap-binding protein subunit 2 
C    3' end processing
D      Pre-mRNA cleavage factor Im (CFIm)
E        CFIO01_08211 cleavage and polyadenylation specificity factor subunit 5	K14397 NUDT21; cleavage and polyadenylation specificity factor subunit 5 
D      Pre-mRNA cleavage factor IIm (CFIIm)
E        CFIO01_00097 pre-mRNA cleavage complex II protein Clp1	K14399 CLP1; polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] 
E        CFIO01_06598 hypothetical protein	K14400 PCF11; pre-mRNA cleavage complex 2 protein Pcf11 
D      Cleavage and polyadenylation specificity factor (CPSF) complex
E        CFIO01_11613 CPSF A subunit region	K14401 CPSF1; cleavage and polyadenylation specificity factor subunit 1 
E        CFIO01_06018 RNA-metabolising metallo-beta-lactamase	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        CFIO01_04261 metallo-beta-lactamase superfamily protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        CFIO01_09951 hypothetical protein	K14404 CPSF4; cleavage and polyadenylation specificity factor subunit 4 
E        CFIO01_03945 Fip1 domain-containing protein	K14405 FIP1L1; pre-mRNA 3'-end-processing factor FIP1 
E        CFIO01_04426 MPE1	K15541 MPE1; protein MPE1 
E        CFIO01_03365 WD domain-containing protein	K15542 PFS2; polyadenylation factor subunit 2 
E        CFIO01_10687 calcineurin-like phosphoesterase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CFIO01_11543 calcineurin-like phosphoesterase	K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] 
E        CFIO01_10989 RNA polymerase II subunit A domain phosphatase SSU72	K15544 SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [EC:3.1.3.16] 
D      Cleavage stimulation factor (CSTF) complex
E        CFIO01_12502 RNA recognition domain-containing protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        CFIO01_07072 mRNA 3'-end-processing protein RNA14	K14408 CSTF3; cleavage stimulation factor subunit 3 
E        CFIO01_02009 mRNA cleavage and polyadenylation specificity factor complex subunit	K06100 SYMPK; symplekin 
D      U7-dependent histone pre-mRNA processing factors
E        CFIO01_07428 LSM domain-containing protein	K11086 SNRPB; small nuclear ribonucleoprotein B and B' 
E        CFIO01_01099 LSM domain-containing protein	K11088 SNRPD3; small nuclear ribonucleoprotein D3 
E        CFIO01_00493 LSM domain-containing protein	K11097 SNRPE; small nuclear ribonucleoprotein E 
E        CFIO01_12719 LSM domain-containing protein	K11098 SNRPF; small nuclear ribonucleoprotein F 
E        CFIO01_11729 LSM domain-containing protein	K11099 SNRPG; small nuclear ribonucleoprotein G 
E        CFIO01_06018 RNA-metabolising metallo-beta-lactamase	K14402 CPSF2; cleavage and polyadenylation specificity factor subunit 2 
E        CFIO01_04261 metallo-beta-lactamase superfamily protein	K14403 CPSF3; cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-] 
E        CFIO01_12502 RNA recognition domain-containing protein	K14407 CSTF2; cleavage stimulation factor subunit 2 
E        CFIO01_02009 mRNA cleavage and polyadenylation specificity factor complex subunit	K06100 SYMPK; symplekin 
D      DRB sensitivity inducing factor (DSIF) complex
E        CFIO01_07580 transcription elongation factor spt-4	K15171 SUPT4H1; transcription elongation factor SPT4 
E        CFIO01_09589 hypothetical protein	K15172 SUPT5H; transcription elongation factor SPT5 
D      N6-methyltransferase complex
E        CFIO01_03901 hypothetical protein	K11393 METTL16; U6 snRNA m6A methyltransferase [EC:2.1.1.346] 
E        CFIO01_05062 hypothetical protein	K22909 ZC3H13; zinc finger CCCH domain-containing protein 13 
D      Poly(A) addition factors
E        CFIO01_11204 hypothetical protein	K14376 PAP; poly(A) polymerase [EC:2.7.7.19] 
D      Negative regulators of mRNA 3' end processing
C    Other processing factors
D      CFIO01_07581 hypothetical protein	K13102 KIN; DNA/RNA-binding protein KIN17 
D      CFIO01_09865 arsenite resistance protein Ars2	K27103 SRRT; serrate RNA effector molecule 
D      CFIO01_12018 hypothetical protein	K23039 NAB2; nuclear polyadenylated RNA-binding protein NAB2 
B  mRNA surveillance and transport factors
C    Transport factors
D      EJC complex
E        CFIO01_12369 RNA recognition domain-containing protein	K12876 RBM8A; RNA-binding protein 8A 
E        CFIO01_00280 mago nashi	K12877 MAGOH; protein mago nashi 
E        CFIO01_08280 RNA recognition domain-containing protein	K12881 THOC4; THO complex subunit 4 
E        CFIO01_03026 RNA binding protein	K12881 THOC4; THO complex subunit 4 
E        CFIO01_11474 ATP-dependent RNA helicase SUB2	K12812 DDX39B; ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7] 
E        CFIO01_06494 ATP-dependent RNA helicase FAL1	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        CFIO01_10917 hypothetical protein	K25178 CCDC174; coiled-coil domain-containing protein 174 
E        CFIO01_10068 Sin3 associated polypeptide p18	K14324 SAP18; histone deacetylase complex subunit SAP18 
E        CFIO01_08897 RNA recognition domain-containing protein	K14325 RNPS1; RNA-binding protein with serine-rich domain 1 
E        CFIO01_01436 hypothetical protein	K13171 SRRM1; serine/arginine repetitive matrix protein 1 
D      TREX complex
E        CFIO01_03168 guanylate kinase	K12878 THOC1; THO complex subunit 1 
E        CFIO01_03084 THO complex subunit 2	K12879 THOC2; THO complex subunit 2 
E        CFIO01_08123 WD domain-containing protein	K12880 THOC3; THO complex subunit 3 
E        CFIO01_08280 RNA recognition domain-containing protein	K12881 THOC4; THO complex subunit 4 
E        CFIO01_03026 RNA binding protein	K12881 THOC4; THO complex subunit 4 
E        CFIO01_01374 hypothetical protein	K13174 THOC5; THO complex subunit 5 
D      TREX-2 complex
E        CFIO01_05376 PCI domain-containing protein	K23801 PCID2; nuclear mRNA export protein PCID2/THP1 
E        CFIO01_00352 DSS1/SEM1 family protein	K10881 SHFM1; 26 proteasome complex subunit DSS1 
E        CFIO01_03498 hypothetical protein	K16466 CETN3; centrin-3 
E        CFIO01_06961 GANP/Nin1/mts3/eIF-3 p25 family protein	K23719 SAC3; nuclear mRNA export protein SAC3 
D      Nuclear pore complex
E        CFIO01_00652 TPR/MLP1/MLP2-like protein	K09291 TPR; nucleoprotein TPR 
E        CFIO01_03613 WD domain-containing protein	K14298 RAE1; mRNA export factor 
E        CFIO01_12384 WD domain-containing protein	K14004 SEC13; protein transport protein SEC13 
E        CFIO01_01522 nucleoporin nup44	K14308 NUP54; nuclear pore complex protein Nup54 
E        CFIO01_09873 nuclear pore glycoprotein p62	K14306 NUP62; nuclear pore complex protein Nup62 
E        CFIO01_07676 hypothetical protein	K14309 NUP93; nuclear pore complex protein Nup93 
E        CFIO01_03468 nucleoporin autopeptidase	K14297 NUP98; nuclear pore complex protein Nup98-Nup96 
E        CFIO01_01442 hypothetical protein	K14301 NUP107; nuclear pore complex protein Nup107 
E        CFIO01_10583 hypothetical protein	K14300 NUP133; nuclear pore complex protein Nup133 
E        CFIO01_11803 hypothetical protein	K14311 NUP188; nuclear pore complex protein Nup188 
E        CFIO01_00017 non-repetitive/WGA-negative nucleoporin	K14312 NUP155; nuclear pore complex protein Nup155 
E        CFIO01_12774 hypothetical protein	K14310 NUP205; nuclear pore complex protein Nup205 
E        CFIO01_03946 nucleoporin NUP49/NSP49	K14307 NUPL1; nucleoporin p58/p45 
E        CFIO01_04554 nucleoporin protein Ndc1-Nup	K14315 NDC1; nucleoporin NDC1 
E        CFIO01_00479 WD domain-containing protein	K14299 SEH1; nucleoporin SEH1 
E        CFIO01_12013 hypothetical protein	K18715 NUP159; nucleoporin NUP159 
E        CFIO01_12189 hypothetical protein	K18716 NUP42; nucleoporin NUP42 
E        CFIO01_03138 nuclear pore complex protein An-Nup82	K18719 NUP82; nucleoporin NUP82 
E        CFIO01_03498 hypothetical protein	K16466 CETN3; centrin-3 
E        CFIO01_02489 GLE1-like protein	K18723 GLE1; nucleoporin GLE1 
E        CFIO01_10753 TAP domain-containing protein	K14284 NXF; nuclear RNA export factor 
E        CFIO01_10535 nuclear transport factor 2 domain-containing protein	K14285 NXT1_2; NTF2-related export protein 1/2 
E        CFIO01_11430 nuclear pore complex component	K18724 POM34; nucleoporin POM34 
E        CFIO01_04251 hypothetical protein	K18725 POM152; nucleoporin POM152 
D      Ran-mediated transport factors
E        CFIO01_01434 GTP-binding nuclear protein GSP1/Ran	K07936 RAN; GTP-binding nuclear protein Ran 
E        CFIO01_12292 UBX domain-containing protein	K18726 FAF2; FAS-associated factor 2 
E        CFIO01_13327 AAA family ATPase	K13525 VCP; transitional endoplasmic reticulum ATPase 
E        CFIO01_06564 hypothetical protein	K14290 XPO1; exportin-1 
E        CFIO01_11104 ran GTPase activating protein 1	K14319 RANGAP1; Ran GTPase-activating protein 1 
D      eIF4F and regulatory proteins
E        CFIO01_07013 eukaryotic initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        CFIO01_01576 eukaryotic initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        CFIO01_02983 ATP-dependent RNA helicase eIF4A	K03257 EIF4A; translation initiation factor 4A 
E        CFIO01_03170 translation initiation factor 4F	K03260 EIF4G; translation initiation factor 4G 
E        CFIO01_07962 RNA recognition domain-containing protein	K03258 EIF4B; translation initiation factor 4B 
E        CFIO01_08936 DEAD/DEAH box helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CFIO01_06552 DEAD/DEAH box helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CFIO01_04145 GYF domain-containing protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        CFIO01_08117 4 family polyadenylate binding protein	K13126 PABPC; polyadenylate-binding protein 
E        CFIO01_12166 DSHCT domain-containing protein	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        CFIO01_11971 Sec63 Brl domain-containing protein	K18664 SLH1; antiviral helicase SLH1 [EC:5.6.2.6] 
E        CFIO01_06819 PUA domain-containing protein	K07575 MCTS; malignant T-cell-amplified sequence 
E        CFIO01_07301 translation machinery-associated protein 22	K24272 DENR; density-regulated protein 
D      APOBEC1-ACF complex
D      Other transport factors
E        CFIO01_12619 hypothetical protein	K14294 WIBG; partner of Y14 and mago 
E        CFIO01_04444 nuclear polyadenylated RNA-binding protein	K14411 MSI; RNA-binding protein Musashi 
E        CFIO01_11459 elongation factor Tu GTP binding domain-containing protein	K14416 HBS1; elongation factor 1 alpha-like protein 
E        CFIO01_11030 translation factor pelota	K06965 PELO; protein pelota 
E        CFIO01_12097 RNA recognition domain-containing protein	K14396 PABPN1; polyadenylate-binding protein 2 
E        CFIO01_08906 DEAD/DEAH box helicase	K18655 DDX19; ATP-dependent RNA helicase DDX19/DBP5 [EC:5.6.2.7] 
E        CFIO01_00516 pre-mRNA-splicing factor SYF1	K12867 SYF1; pre-mRNA-splicing factor SYF1 
E        CFIO01_09895 hypothetical protein	K18732 SARNP; SAP domain-containing ribonucleoprotein 
E        CFIO01_06835 hypothetical protein	K11493 RCC1; regulator of chromosome condensation 
E        CFIO01_12595 GDP/GTP exchange factor	K11493 RCC1; regulator of chromosome condensation 
E        CFIO01_11298 GANP/Nin1/mts3/eIF-3 p25 family protein	K23802 LENG8; SAC3 family protein LENG8/THP3 
C    Surveillance factors
D      Surveillance complex
E        CFIO01_11809 peptide chain release factor eRF/aRF	K03265 ETF1; peptide chain release factor subunit 1 
E        CFIO01_03482 elongation factor Tu GTP binding domain-containing protein	K03267 ERF3; peptide chain release factor subunit 3 
E        CFIO01_04504 RNA helicase	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        CFIO01_10397 MIF4G domain-containing protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        CFIO01_13345 smg-4/UPF3 family protein	K14328 UPF3; regulator of nonsense transcripts 3 
D      Protein phosphatase 2A
E        CFIO01_10354 serine/threonine-protein phosphatase PP2A catalytic subunit	K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] 
E        CFIO01_03334 hypothetical protein	K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A 
E        CFIO01_08143 protein phosphatase PP2A regulatory subunit B	K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B 
E        CFIO01_06987 protein phosphatase 2A regulatory B subunit	K11584 PPP2R5; serine/threonine-protein phosphatase 2A regulatory subunit B' 
D      Other surveillance factors
E        CFIO01_11814 telomerase activating protein Est1	K14409 SMG7; protein SMG7 
E        CFIO01_04145 GYF domain-containing protein	K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein 
E        CFIO01_07189 elongation factor Tu GTP binding domain-containing protein	K24887 GTPBP1; GTP-binding protein 1 
C    Factors involved in mRNA localization
D      Cargo complex
E        CFIO01_07307 CPL domain-containing protein	K14844 PUF6; pumilio homology domain family member 6 
E        CFIO01_08594 KH domain-containing protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        CFIO01_03303 KH domain-containing protein	K18738 HEK; heterogeneous nuclear rnp K-like protein 
E        CFIO01_06908 hypothetical protein	K10357 MYO5; myosin V 
E        CFIO01_02293 hypothetical protein	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
E        CFIO01_05806 3'-5' exonuclease	K18740 EXD1; exonuclease 3'-5' domain-containing protein 1 
D      Factors that have mRNA localization signals
D      Trans-acting binding proteins
E        CFIO01_00698 KH domain-containing protein	K13210 FUBP; far upstream element-binding protein 
E        CFIO01_11150 translation elongation factor EF-1	K03231 EEF1A; elongation factor 1-alpha 
E        CFIO01_07573 glutathione S-transferase domain-containing protein	K03233 EEF1G; elongation factor 1-gamma 
E        CFIO01_00233 elongation factor 1-gamma	K03233 EEF1G; elongation factor 1-gamma 
D      Other mRNA localization factors
E        CFIO01_02491 RNB domain-containing protein	K18748 SSD1; protein SSD1 
C    mRNA cycle factors
D      Common to processing body (P body) and stress granule
E        CFIO01_08931 XRN 5'-3' exonuclease	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        CFIO01_07073 piwi domain-containing protein	K11593 ELF2C; eukaryotic translation initiation factor 2C 
E        CFIO01_07013 eukaryotic initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        CFIO01_01576 eukaryotic initiation factor 4E	K03259 EIF4E; translation initiation factor 4E 
E        CFIO01_04504 RNA helicase	K14326 UPF1; regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] 
E        CFIO01_08936 DEAD/DEAH box helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CFIO01_06552 DEAD/DEAH box helicase	K11594 DDX3X; ATP-dependent RNA helicase DDX3X [EC:5.6.2.7] 
E        CFIO01_08667 DEAD/DEAH box helicase	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        CFIO01_07267 hypothetical protein	K18749 LSM14; protein LSM14 
E        CFIO01_12217 hypothetical protein	K18752 TNPO1; transportin-1 
E        CFIO01_11814 telomerase activating protein Est1	K14409 SMG7; protein SMG7 
E        CFIO01_02933 hypothetical protein	K04345 PKA; protein kinase A [EC:2.7.11.11] 
E        CFIO01_07292 La domain-containing protein	K18757 LARP1; la-related protein 1 
D      P-body specific factors
E        CFIO01_03159 hypothetical protein	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        CFIO01_06585 LSM domain-containing protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        CFIO01_12643 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        CFIO01_07188 LSM domain-containing protein	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        CFIO01_02446 hypothetical protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        CFIO01_13510 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        CFIO01_12290 LSM domain-containing protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        CFIO01_10748 LSM domain-containing protein	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
E        CFIO01_06908 hypothetical protein	K10357 MYO5; myosin V 
E        CFIO01_02012 tubulin/FtsZ family protein	K07374 TUBA; tubulin alpha 
E        CFIO01_07452 tubulin alpha-B chain	K07374 TUBA; tubulin alpha 
E        CFIO01_03456 CCR4-Not complex component	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        CFIO01_12543 NOT2/NOT3/NOT5 family protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        CFIO01_04509 Not1 domain-containing protein	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        CFIO01_00530 RNA recognition domain-containing protein	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        CFIO01_11981 endonuclease/Exonuclease/phosphatase	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        CFIO01_08543 CAF1 family ribonuclease	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        CFIO01_03492 PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        CFIO01_12291 hypothetical protein	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
E        CFIO01_11309 topoisomerase II-associated protein PAT1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
E        CFIO01_13329 DFDF domain-containing protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        CFIO01_10397 MIF4G domain-containing protein	K14327 UPF2; regulator of nonsense transcripts 2 
E        CFIO01_13345 smg-4/UPF3 family protein	K14328 UPF3; regulator of nonsense transcripts 3 
E        CFIO01_02214 DNA-directed RNA polymerase II subunit RPB7	K03015 RPB7; DNA-directed RNA polymerase II subunit RPB7 
D      Stress granule specific factors
E        CFIO01_03176 RNA recognition domain-containing protein	K13201 TIA1; nucleolysin TIA-1/TIAR 
E        CFIO01_08117 4 family polyadenylate binding protein	K13126 PABPC; polyadenylate-binding protein 
E        CFIO01_12398 NTF2 and RRM domain-containing protein	K24983 G3BP2; Ras GTPase-activating protein-binding protein 2 
E        CFIO01_04193 eukaryotic translation initiation factor eIF2A	K15026 EIF2A; translation initiation factor 2A 
E        CFIO01_09623 eukaryotic translation initiation factor eIF2A	K03253 EIF3B; translation initiation factor 3 subunit B 
E        CFIO01_02983 ATP-dependent RNA helicase eIF4A	K03257 EIF4A; translation initiation factor 4A 
E        CFIO01_06494 ATP-dependent RNA helicase FAL1	K13025 EIF4A3; ATP-dependent RNA helicase [EC:5.6.2.7] 
E        CFIO01_07962 RNA recognition domain-containing protein	K03258 EIF4B; translation initiation factor 4B 
E        CFIO01_03170 translation initiation factor 4F	K03260 EIF4G; translation initiation factor 4G 
E        CFIO01_07049 guanine nucleotide-binding protein subunit beta-like protein	K14753 RACK1; guanine nucleotide-binding protein subunit beta-2-like 1 protein 
E        CFIO01_10753 TAP domain-containing protein	K14284 NXF; nuclear RNA export factor 
E        CFIO01_10701 histone deacetylase	K11407 HDAC6; histone deacetylase 6 [EC:3.5.1.98] 
B  mRNA degradation factors
C    5'-3' decay
D      Decapping complex
E        CFIO01_03159 hypothetical protein	K12613 DCP2; mRNA-decapping enzyme subunit 2 [EC:3.6.1.62] 
E        CFIO01_08667 DEAD/DEAH box helicase	K12614 DDX6; ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7] 
E        CFIO01_13329 DFDF domain-containing protein	K12615 EDC3; enhancer of mRNA-decapping protein 3 
E        CFIO01_11309 topoisomerase II-associated protein PAT1	K12617 PATL1; DNA topoisomerase 2-associated protein PAT1 
D      Lsm complex
E        CFIO01_06585 LSM domain-containing protein	K12620 LSM1; U6 snRNA-associated Sm-like protein LSm1 
E        CFIO01_12643 U6 snRNA-associated Sm-like protein LSm2	K12621 LSM2; U6 snRNA-associated Sm-like protein LSm2 
E        CFIO01_07188 LSM domain-containing protein	K12622 LSM3; U6 snRNA-associated Sm-like protein LSm3 
E        CFIO01_02446 hypothetical protein	K12624 LSM5; U6 snRNA-associated Sm-like protein LSm5 
E        CFIO01_13510 U6 snRNA-associated Sm-like protein LSm6	K12625 LSM6; U6 snRNA-associated Sm-like protein LSm6 
E        CFIO01_12290 LSM domain-containing protein	K12626 LSM7; U6 snRNA-associated Sm-like protein LSm7 
E        CFIO01_10748 LSM domain-containing protein	K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8 
D      5' exonucleases
E        CFIO01_08931 XRN 5'-3' exonuclease	K12618 XRN1; 5'-3' exoribonuclease 1 [EC:3.1.13.-] 
E        CFIO01_12490 XRN 5'-3' exonuclease	K12619 XRN2; 5'-3' exoribonuclease 2 [EC:3.1.13.-] 
D      Other 5'-3' decay factors
E        CFIO01_00172 scavenger mRNA decapping enzyme	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
C    3'-5' decay
D      Core exosome factors
E        CFIO01_12553 exosome component EXOSC1/CSL4	K07573 CSL4; exosome complex component CSL4 
E        CFIO01_10577 exosome complex exonuclease RRP4	K03679 RRP4; exosome complex component RRP4 
E        CFIO01_11322 exosome complex exonuclease RRP40	K03681 RRP40; exosome complex component RRP40 
E        CFIO01_01430 exosome complex subunit Rrp46	K12590 RRP46; exosome complex component RRP46 
E        CFIO01_00511 3' exoribonuclease	K12587 MTR3; exosome complex component MTR3 
E        CFIO01_06560 3' exoribonuclease family protein	K12589 RRP42; exosome complex component RRP42 
E        CFIO01_13445 exosome complex exonuclease RRP43	K12586 RRP43; exosome complex component RRP43 
E        CFIO01_12840 3' exoribonuclease family protein	K03678 RRP45; exosome complex component RRP45 
D      Exosome cofactors
E        CFIO01_10930 RNB domain-containing protein	K12585 DIS3; exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] 
E        CFIO01_11781 3'-5' exonuclease	K12591 RRP6; exosome complex exonuclease RRP6 [EC:3.1.13.-] 
E        CFIO01_01666 Sas10/Utp3/C1D family protein	K12592 C1D; exosome complex protein LRP1 
E        CFIO01_07724 DEAD/DEAH box helicase	K20103 DDX60; ATP-dependent RNA helicase DDX60 [EC:5.6.2.7] 
D      TRAMP complex
E        CFIO01_07365 hypothetical protein	K03514 PAPD5_7; non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19] 
E        CFIO01_13575 zinc knuckle	K12597 AIR1_2; protein AIR1/2 
E        CFIO01_07951 DSHCT domain-containing protein	K12598 MTR4; ATP-dependent RNA helicase DOB1 [EC:5.6.2.6] 
D      Ski complex
E        CFIO01_12166 DSHCT domain-containing protein	K12599 SKI2; antiviral helicase SKI2 [EC:5.6.2.6] 
E        CFIO01_06465 tetratricopeptide	K12600 SKI3; superkiller protein 3 
E        CFIO01_10470 WD repeat domain-containing protein	K12601 SKI8; superkiller protein 8 
D      Ccr4-NOT complex
E        CFIO01_11981 endonuclease/Exonuclease/phosphatase	K12603 CNOT6; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] 
E        CFIO01_03456 CCR4-Not complex component	K12604 CNOT1; CCR4-NOT transcription complex subunit 1 
E        CFIO01_12543 NOT2/NOT3/NOT5 family protein	K12605 CNOT2; CCR4-NOT transcription complex subunit 2 
E        CFIO01_04509 Not1 domain-containing protein	K12580 CNOT3; CCR4-NOT transcription complex subunit 3 
E        CFIO01_00530 RNA recognition domain-containing protein	K10643 CNOT4; CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] 
E        CFIO01_08543 CAF1 family ribonuclease	K12581 CNOT7_8; CCR4-NOT transcription complex subunit 7/8 
E        CFIO01_10907 cell differentiation family protein	K12606 RCD1; CCR4-NOT transcription complex subunit 9 
E        CFIO01_10530 ABC transporter	K12608 CAF16; CCR4-NOT complex subunit CAF16 
E        CFIO01_13078 PH domain-containing protein	K12609 CAF120; CCR4-NOT transcriptional complex subunit CAF120 
D      Pan complex
E        CFIO01_03492 PAB-dependent poly(A)-specific ribonuclease subunit PAN2	K12571 PAN2; PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4] 
E        CFIO01_12291 hypothetical protein	K12572 PAN3; PAB-dependent poly(A)-specific ribonuclease subunit 3 
D      Other 3'-5' decay factors
E        CFIO01_04359 hypothetical protein	K01148 PARN; poly(A)-specific ribonuclease [EC:3.1.13.4] 
E        CFIO01_00172 scavenger mRNA decapping enzyme	K12584 DCPS; m7GpppX diphosphatase [EC:3.6.1.59] 
E        CFIO01_08547 hypothetical protein	K26109 NRDE2; nuclear exosome regulator NRDE2 
E        CFIO01_13166 SAM domain-containing protein	K27407 VTS1; RNA-binding protein VTS1 
C    Other degradation factors
D      RNases
#
A<b>Prokaryotic type</b>
B  Bacterial mRNA degradation factors
C    RNA degradosome components
D      Ribonucreases
E        CFIO01_05494 RNase3 domain-containing protein	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        CFIO01_07719 hypothetical protein	K03685 rnc; ribonuclease III [EC:3.1.26.3] 
E        CFIO01_02020 exonuclease	K13288 orn; oligoribonuclease [EC:3.1.-.-] 
D      Helicases
D      Other RNA degradosome components
E        CFIO01_01411 phosphopyruvate hydratase	K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] 
E        CFIO01_06895 6-phosphofructokinase	K00850 pfkA; 6-phosphofructokinase 1 [EC:2.7.1.11] 
C    Other RNA degradation factors
D      Chaperones
E        CFIO01_00454 hsp70-like protein	K04043 dnaK; molecular chaperone DnaK 
E        CFIO01_05503 chaperonin GroL	K04077 groEL; chaperonin GroEL [EC:5.6.1.7] 
D      Others
D      Bacterial Small RNA Regulators
B  Archeal mRNA degradation factors
C    Exosome components
D      Core exosome
E        CFIO01_10577 exosome complex exonuclease RRP4	K03679 RRP4; exosome complex component RRP4 
E        CFIO01_12553 exosome component EXOSC1/CSL4	K07573 CSL4; exosome complex component CSL4 
D      Cofactors
E        CFIO01_06560 3' exoribonuclease family protein	K12589 RRP42; exosome complex component RRP42 
D      Others
!
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#Last updated: April 25, 2024