+D GENES KO
#
KEGG Orthology (KO) - Campylobacter fetus subsp. fetus 04/554
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:cft00010]
D CFF04554_0079 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CFF04554_0800 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CFF04554_0507 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CFF04554_1440 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CFF04554_1442 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CFF04554_1441 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CFF04554_1376 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CFF04554_0201 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CFF04554_0623 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CFF04554_0391 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CFF04554_0909 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CFF04554_0908 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CFF04554_0103 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CFF04554_1320 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:cft00020]
D CFF04554_0179 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CFF04554_0987 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CFF04554_0914 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CFF04554_0909 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CFF04554_0908 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CFF04554_0907 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CFF04554_0910 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CFF04554_0911 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CFF04554_0912 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CFF04554_0414 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0413 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0415 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CFF04554_0963 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CFF04554_0913 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CFF04554_0621 mqo; malate:quinone-oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D CFF04554_0685 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CFF04554_1319 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CFF04554_1320 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CFF04554_0391 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:cft00030]
D CFF04554_0079 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CFF04554_0867 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CFF04554_1597 transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CFF04554_1598 transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CFF04554_0069 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CFF04554_0334 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CFF04554_1198 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CFF04554_0103 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CFF04554_1489 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CFF04554_0507 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CFF04554_0800 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:cft00040]
D CFF04554_1051 uxaA; altronate hydrolase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7]
D CFF04554_1403 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CFF04554_0078 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CFF04554_0867 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CFF04554_0563 hypothetical protein, putative aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:cft00051]
D CFF04554_0103 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CFF04554_0104 bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CFF04554_0484 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CFF04554_0563 hypothetical protein, putative aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D CFF04554_1052 short chain dehydrogenase K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]
D CFF04554_0800 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CFF04554_0507 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CFF04554_1440 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CFF04554_1198 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:cft00052]
D CFF04554_1404 UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CFF04554_0078 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CFF04554_0103 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism [PATH:cft00053]
D CFF04554_1403 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CFF04554_1408 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
C 00500 Starch and sucrose metabolism [PATH:cft00500]
D CFF04554_0078 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CFF04554_0103 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CFF04554_0079 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cft00520]
D CFF04554_0783 glycosyl hydrolase, family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CFF04554_0580 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CFF04554_1716 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CFF04554_0760 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CFF04554_0891 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CFF04554_0205 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CFF04554_1409 polysaccharide biosynthesis protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D CFF04554_1635 pseB; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CFF04554_1576 pseC; UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D CFF04554_1636 pseH; UDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D CFF04554_1565 pseI; pseudaminic acid synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D CFF04554_1560 pseF; CMP-pseudaminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D CFF04554_1370 pglF; N-acetyl-hexosamine dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D CFF04554_1371 pglE; N-acetyl-hexosamine aminotransferase K15910 pglE; UDP-N-acetylbacillosamine transaminase [EC:2.6.1.34]
D CFF04554_1395 pglD; N-acetyl-hexosamine acetyltransferase K15913 pglD; UDP-N-acetylbacillosamine N-acetyltransferase [EC:2.3.1.203]
D CFF04554_0103 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CFF04554_0078 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CFF04554_1403 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CFF04554_1404 UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CFF04554_1408 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D CFF04554_0079 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CFF04554_0104 bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CFF04554_0484 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CFF04554_1605 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00620 Pyruvate metabolism [PATH:cft00620]
D CFF04554_0391 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CFF04554_0909 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CFF04554_0908 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CFF04554_0818 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CFF04554_0819 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CFF04554_0623 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CFF04554_1380 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CFF04554_1574 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CFF04554_1573 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CFF04554_0251 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CFF04554_0070 aldA; aldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D CFF04554_1063 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CFF04554_1569 mez; malate oxidoreductase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D CFF04554_0685 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CFF04554_1319 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CFF04554_0913 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CFF04554_0621 mqo; malate:quinone-oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D CFF04554_0963 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CFF04554_0414 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0413 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0415 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CFF04554_1320 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CFF04554_0699 conserved hypothetical membrane protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D CFF04554_1361 leuA; 2-isopropylmalate synthase, bacterial dimerization domain type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cft00630]
D CFF04554_0913 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CFF04554_0179 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CFF04554_0987 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CFF04554_0702 gycolate oxidase, subunit GlcD-related protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D CFF04554_1577 glpC; anaerobic glycerol-3-phosphate dehydrogenase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D CFF04554_1761 catalase-like protein K03781 katE; catalase [EC:1.11.1.6]
D CFF04554_1045 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D CFF04554_0916 hypothetical protein, putative phosphoglycolate phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CFF04554_0390 hypothetical protein, probable phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CFF04554_1042 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CFF04554_1168 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CFF04554_0070 aldA; aldehyde dehydrogenase K07248 aldA; lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase [EC:1.2.1.22 1.2.1.21]
D CFF04554_1553 fdhE; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CFF04554_1552 fdhF; formate dehydrogenase, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CFF04554_1495 fdhC; formate dehydrogenase, cytochrome b-556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CFF04554_0828 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:cft00640]
D CFF04554_0818 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CFF04554_0819 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CFF04554_1380 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CFF04554_1574 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CFF04554_1573 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CFF04554_0251 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CFF04554_0912 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CFF04554_0911 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CFF04554_0987 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CFF04554_0223 family III metal-dependent polyol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:cft00650]
D CFF04554_0414 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0413 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0415 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CFF04554_0918 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CFF04554_0391 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CFF04554_0909 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CFF04554_0908 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CFF04554_0822 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CFF04554_0823 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:cft00660]
D CFF04554_0822 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CFF04554_0823 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CFF04554_0912 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CFF04554_0911 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CFF04554_0196 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CFF04554_1010 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CFF04554_1009 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism
D CFF04554_1440 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:cft00190]
D CFF04554_0158 nuoA; NADH:quinone oxidoreductase I, membrane subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D CFF04554_0159 nuoB; NADH:quinone oxidoreductase I, chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D CFF04554_0160 nuoCD; NADH:quinone oxidoreductase I, fused chains C and D K13378 nuoCD; NADH-quinone oxidoreductase subunit C/D [EC:7.1.1.2]
D CFF04554_0161 nuoE; NADH:quinone oxidoreductase I, chain E K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D CFF04554_1641 hypothetical protein K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CFF04554_0162 nuoF; NADH:quinone oxidoreductase I, chain F K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CFF04554_0163 nuoG; NADH:quinone oxidoreductase I, chain G K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D CFF04554_0164 nuoH; NADH:quinone oxidoreductase I, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D CFF04554_0165 nuoI; NADH:quinone oxidoreductase I, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D CFF04554_0166 nuoJ; NADH:quinone oxidoreductase I, membrane subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D CFF04554_0167 nuoK; NADH:quinone oxidoreductase I, membrane subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D CFF04554_0168 nuoL; NADH:quinone oxidoreductase I, membrane subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D CFF04554_0169 nuoM; NADH:quinone oxidoreductase I, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D CFF04554_0170 nuoN; NADH:quinone oxidoreductase I, membrane subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D CFF04554_0414 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0413 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0415 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CFF04554_1460 petA; ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CFF04554_1461 petB; ubiquinol cytochrome c oxidoreductase, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CFF04554_1462 petC; ubiquinol cytochrome c oxidoreductase, cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CFF04554_0377 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CFF04554_0378 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CFF04554_0379 ccoQ; cytochrome c oxidase, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CFF04554_0380 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CFF04554_1431 cytochrome c553 K08738 CYC; cytochrome c
D CFF04554_1429 cytochrome c553 K08738 CYC; cytochrome c
D CFF04554_1539 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CFF04554_1537 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CFF04554_1538 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CFF04554_1540 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CFF04554_1536 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CFF04554_0778 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CFF04554_1541 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CFF04554_1542 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CFF04554_1308 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CFF04554_1225 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D CFF04554_0880 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CFF04554_1074 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:cft00710]
D CFF04554_1441 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CFF04554_1442 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CFF04554_0507 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CFF04554_0800 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CFF04554_1597 transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CFF04554_1598 transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CFF04554_0069 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CFF04554_1198 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CFF04554_1440 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CFF04554_0867 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CFF04554_0334 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CFF04554_1320 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CFF04554_1569 mez; malate oxidoreductase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D CFF04554_0913 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
C 00720 Other carbon fixation pathways [PATH:cft00720]
D CFF04554_0391 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CFF04554_0685 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CFF04554_1319 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CFF04554_0913 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CFF04554_0963 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CFF04554_0414 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0413 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CFF04554_0415 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CFF04554_0911 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CFF04554_0912 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CFF04554_0909 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CFF04554_0908 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CFF04554_0907 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CFF04554_0910 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CFF04554_0914 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CFF04554_0987 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CFF04554_1380 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CFF04554_1574 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CFF04554_1573 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CFF04554_0251 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CFF04554_1201 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CFF04554_0819 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CFF04554_0818 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:cft00680]
D CFF04554_1553 fdhE; formate dehydrogenase, alpha subunit K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CFF04554_1552 fdhF; formate dehydrogenase, iron-sulfur subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CFF04554_1495 fdhC; formate dehydrogenase, cytochrome b-556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CFF04554_1168 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CFF04554_0201 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CFF04554_0913 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CFF04554_0507 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CFF04554_0800 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CFF04554_0427 molybdopterin-binding TMAO/DMSO/BSO reductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CFF04554_0818 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CFF04554_0819 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CFF04554_1376 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CFF04554_1275 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CFF04554_0254 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CFF04554_0333 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:cft00910]
D CFF04554_1188 napA; periplasmic nitrate reductase, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D CFF04554_1185 napB; periplasmic nitrate reductase, small subunit, cytochrome c550 protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D CFF04554_1272 nrfA; formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D CFF04554_1271 nrfH; tetraheme cytochrome c-type protein NrfH K15876 nrfH; cytochrome c nitrite reductase small subunit
D CFF04554_0438 nosZ; nitrous oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D CFF04554_0919 hybrid cluster protein K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D CFF04554_0806 multiheme c-type cytochrome K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6]
D CFF04554_1238 npd; nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D CFF04554_0608 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CFF04554_1566 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CFF04554_1042 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CFF04554_1499 gltB; glutamate synthase (NADPH), large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CFF04554_1498 gltD; glutamate synthase (NADPH), small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CFF04554_1734 cynT; carbonic anhydrase beta K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:cft00920]
D CFF04554_0406 sat; ATP sulfurylase (sulfate adenylyltransferase) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CFF04554_0180 cysQ; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CFF04554_0899 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CFF04554_0922 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CFF04554_0606 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:cft00061]
D CFF04554_1380 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CFF04554_1574 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CFF04554_1573 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CFF04554_0251 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CFF04554_1378 acpP1; acyl carrier protein K02078 acpP; acyl carrier protein
D CFF04554_1528 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CFF04554_0237 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CFF04554_1379 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CFF04554_1377 fabG; 3-oxo-acyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CFF04554_0312 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CFF04554_1439 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CFF04554_1670 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D CFF04554_1670 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:cft00074]
D CFF04554_0923 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CFF04554_1378 acpP1; acyl carrier protein K02078 acpP; acyl carrier protein
D CFF04554_1528 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:cft00121]
D CFF04554_0790 short-chain dehydrogenase/reductase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:cft00561]
D CFF04554_0236 plsX; fatty acid / phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CFF04554_0240 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CFF04554_0950 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CFF04554_1723 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:cft00564]
D CFF04554_0782 gpsA; glycerol 3-phosphate dehydrogenase [NAD(P)+] K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CFF04554_0240 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CFF04554_0950 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CFF04554_1723 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CFF04554_0198 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D CFF04554_0209 cdsA; phosphatidate cytidylyltransferase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CFF04554_1362 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CFF04554_1363 phosphatidylserine decarboxylase-related protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CFF04554_1181 psd; phosphatidylserine decarboxylase, proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CFF04554_0789 pgsA; phosphatidylglycerophosphate synthase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CFF04554_0405 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
C 00565 Ether lipid metabolism [PATH:cft00565]
D CFF04554_0198 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D CFF04554_0198 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D CFF04554_0198 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:cft00592]
D CFF04554_0198 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
D CFF04554_1305 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:cft00230]
D CFF04554_0103 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CFF04554_1489 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CFF04554_0297 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CFF04554_1288 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CFF04554_1688 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CFF04554_0551 purL; phosphoribosylformylglycinamidine synthase PurLQS, PurL subunit K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D CFF04554_0947 purS; phosphoribosylformylglycinamidine synthase PurLQS, PurS subunit K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D CFF04554_0948 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CFF04554_1769 purM; phosphoribosylformylglycinamide cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CFF04554_1037 purE; 5-aminoimidazole ribonucleotide (AIR) carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CFF04554_0946 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CFF04554_1810 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CFF04554_0553 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CFF04554_1196 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CFF04554_0325 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CFF04554_1457 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CFF04554_0605 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CFF04554_0233 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CFF04554_0274 putative dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CFF04554_0576 putative nucleotide phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CFF04554_1291 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CFF04554_1449 gmk; deoxyguanylate kinase / guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CFF04554_1811 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CFF04554_0028 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CFF04554_0020 nrdD1; anaerobic ribonucleoside triphosphate reductase, large subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CFF04554_1240 spoT; ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CFF04554_0245 gppA; guanosine-5'-triphosphate, 3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CFF04554_1005 exopolyphosphatase, Ppx/GppA family K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CFF04554_0369 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CFF04554_1224 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CFF04554_0634 HIT family hydrolase, FHIT branch K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D CFF04554_0406 sat; ATP sulfurylase (sulfate adenylyltransferase) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:cft00240]
D CFF04554_0317 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CFF04554_0373 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CFF04554_1490 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CFF04554_1491 pyrC2; dihydroorotase, subgroup IIa K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CFF04554_0793 pyrD; dihydroorotate dehydrogenase 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D CFF04554_1775 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CFF04554_1349 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CFF04554_1242 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CFF04554_0233 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CFF04554_1020 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CFF04554_1750 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CFF04554_0325 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CFF04554_1568 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D CFF04554_0020 nrdD1; anaerobic ribonucleoside triphosphate reductase, large subunit K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CFF04554_1575 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D CFF04554_1811 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CFF04554_0028 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CFF04554_0896 tmk; thymidylate kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CFF04554_1792 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CFF04554_0975 short-chain dehydrogenase/reductase, subgroup 5 K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:cft00250]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_1014 ansB; L-asparaginase II, secreted K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CFF04554_1613 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CFF04554_1619 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CFF04554_1645 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D CFF04554_0848 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CFF04554_1321 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CFF04554_0369 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CFF04554_1810 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CFF04554_1490 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CFF04554_0918 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CFF04554_1499 gltB; glutamate synthase (NADPH), large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CFF04554_1498 gltD; glutamate synthase (NADPH), small subunit K00266 gltD; glutamate synthase (NADPH) small chain [EC:1.4.1.13]
D CFF04554_1566 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CFF04554_1269 putA; proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CFF04554_1042 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CFF04554_0317 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CFF04554_0373 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CFF04554_0948 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CFF04554_0580 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CFF04554_0297 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:cft00260]
D CFF04554_1143 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CFF04554_1474 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CFF04554_0291 hypothetical protein (UPF0102 domain) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CFF04554_1507 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CFF04554_1068 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CFF04554_1168 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CFF04554_1376 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CFF04554_1275 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CFF04554_0254 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CFF04554_0333 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D CFF04554_0975 short-chain dehydrogenase/reductase, subgroup 5 K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D CFF04554_1362 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CFF04554_0751 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CFF04554_0353 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CFF04554_0352 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:cft00270]
D CFF04554_0899 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CFF04554_0922 cysK; cysteine synthase A K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CFF04554_0881 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CFF04554_0729 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CFF04554_1527 pfs; 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D CFF04554_1457 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CFF04554_0113 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CFF04554_1143 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CFF04554_1474 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CFF04554_0291 hypothetical protein (UPF0102 domain) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CFF04554_1507 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CFF04554_0606 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D CFF04554_0920 metY; O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D CFF04554_0302 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_0913 mdh; malate dehydrogenase, NAD-dependent K00024 mdh; malate dehydrogenase [EC:1.1.1.37]
D CFF04554_1275 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CFF04554_0254 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:cft00280]
D CFF04554_0302 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cft00290]
D CFF04554_0751 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CFF04554_0196 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CFF04554_1010 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CFF04554_1009 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D CFF04554_0822 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CFF04554_0823 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CFF04554_1154 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CFF04554_1748 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CFF04554_0302 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CFF04554_0699 conserved hypothetical membrane protein K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
D CFF04554_1361 leuA; 2-isopropylmalate synthase, bacterial dimerization domain type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:cft00300]
D CFF04554_0291 hypothetical protein (UPF0102 domain) K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CFF04554_1143 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CFF04554_1474 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CFF04554_0791 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CFF04554_0296 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CFF04554_0411 dapD; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CFF04554_0926 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CFF04554_0620 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CFF04554_1766 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CFF04554_0271 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CFF04554_0063 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CFF04554_0817 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:cft00310]
D CFF04554_0918 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CFF04554_0558 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:cft00220]
D CFF04554_1582 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CFF04554_0848 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CFF04554_1321 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CFF04554_0948 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CFF04554_1042 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CFF04554_0317 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CFF04554_0373 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CFF04554_1566 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_1211 acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D CFF04554_0971 argJ; bifunctional ornithine acetyltransferase / N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D CFF04554_1067 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D CFF04554_0328 argC; N-acetyl-gamma-glutamylphosphate reductase K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D CFF04554_0926 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:cft00330]
D CFF04554_0898 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D CFF04554_0524 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D CFF04554_0526 aguB; N-carbamoylputrescine amidohydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D CFF04554_0283 saccharopine dehydrogenase K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D CFF04554_0338 nspC; carboxynorspermidine decarboxylase K27684 capadc; carboxyaminopropylagmatine decarboxylase [EC:4.1.1.127]
D CFF04554_1578 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CFF04554_1269 putA; proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CFF04554_1547 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CFF04554_0627 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_0558 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:cft00340]
D CFF04554_1178 hisG; ATP phosphoribosyltransferase K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CFF04554_0300 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D CFF04554_1367 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D CFF04554_1368 hisH; imidazole glycerol phosphate synthase HisFH, HisH subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CFF04554_1805 hisF; imidazole glycerol phosphate synthase HisFH, HisF subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CFF04554_1216 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D CFF04554_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CFF04554_1041 hisJ; histidinol-phosphate phosphatase K04486 E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]
D CFF04554_0511 hisD; histidinal dehydrogenase / histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
C 00350 Tyrosine metabolism [PATH:cft00350]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CFF04554_0918 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:cft00360]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CFF04554_0558 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00380 Tryptophan metabolism [PATH:cft00380]
D CFF04554_0608 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CFF04554_1761 catalase-like protein K03781 katE; catalase [EC:1.11.1.6]
D CFF04554_1045 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cft00400]
D CFF04554_0626 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CFF04554_0860 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CFF04554_1517 aroD; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CFF04554_1165 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D CFF04554_1357 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CFF04554_1279 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CFF04554_1737 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CFF04554_0349 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CFF04554_0350 trpDG; anthranilate phosphoribosyltransferase / anthranilate synthase component II K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D CFF04554_0351 trpF; phosphoribosylanthranilate isomerase K01817 trpF; phosphoribosylanthranilate isomerase [EC:5.3.1.24]
D CFF04554_0633 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D CFF04554_0353 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CFF04554_0352 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D CFF04554_0269 pheA; chorismate mutase / prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D CFF04554_1512 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:cft00410]
D CFF04554_0064 panD; aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CFF04554_1385 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:cft00430]
D CFF04554_0819 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CFF04554_0818 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:cft00450]
D CFF04554_0881 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CFF04554_0294 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CFF04554_0628 NADPH oxidoreductase, putative flavodoxin quinone reductase FqrB K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CFF04554_0406 sat; ATP sulfurylase (sulfate adenylyltransferase) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CFF04554_0340 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CFF04554_1557 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CFF04554_0802 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:cft00460]
D CFF04554_0608 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CFF04554_1014 ansB; L-asparaginase II, secreted K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CFF04554_1168 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:cft00470]
D CFF04554_1589 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CFF04554_0558 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CFF04554_0814 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CFF04554_0948 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CFF04554_0583 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CFF04554_1374 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CFF04554_1766 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CFF04554_0271 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
C 00480 Glutathione metabolism [PATH:cft00480]
D CFF04554_1194 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CFF04554_1060 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CFF04554_0914 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:cft00540]
D CFF04554_0313 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CFF04554_1509 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CFF04554_0824 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CFF04554_0329 hypothetical protein, possible metallophosphatase (YbbF/LpxH family) K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CFF04554_0326 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CFF04554_1066 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CFF04554_1801 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CFF04554_1354 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CFF04554_1215 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CFF04554_1069 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CFF04554_1032 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CFF04554_1412 waaM; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CFF04554_1722 eptA; lipidA/FlgG phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CFF04554_1424 gmhA; sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CFF04554_1426 waaE; D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D CFF04554_1428 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CFF04554_1427 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
D CFF04554_1411 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CFF04554_1610 glycosyltransferase, GT9 family K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CFF04554_1423 heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CFF04554_1414 waaQ; heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CFF04554_1420 glycosyltransferase, GT9 family K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CFF04554_1422 glycosyltransferase, GT1 family K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D CFF04554_1421 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cft00541]
D CFF04554_0078 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CFF04554_1404 UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CFF04554_1403 ugd; UDP-glucose 6-dehydrogenase K00012 UGDH; UDPglucose 6-dehydrogenase [EC:1.1.1.22]
D CFF04554_1408 NAD-dependent epimerase/dehydratase K08679 GAE; UDP-glucuronate 4-epimerase [EC:5.1.3.6]
D CFF04554_0104 bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase K00971 manC; mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]
D CFF04554_0484 GDP-D-mannose dehydratase K01711 gmd; GDPmannose 4,6-dehydratase [EC:4.2.1.47]
D CFF04554_1605 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
D CFF04554_0760 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CFF04554_1635 pseB; UDP-N-acetylglucosamine 4,6-dehydratase K15894 pseB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]
D CFF04554_1576 pseC; UDP-2-acetamido-2,6-dideoxy-beta-L-arabino-hex-4-ulose aminotransferase K15895 pseC; UDP-4-amino-4,6-dideoxy-L-N-acetyl-beta-L-altrosamine transaminase [EC:2.6.1.92]
D CFF04554_1636 pseH; UDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferase K15896 pseH; UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase [EC:2.3.1.202]
D CFF04554_1565 pseI; pseudaminic acid synthase K15898 pseI; pseudaminic acid synthase [EC:2.5.1.97]
D CFF04554_1560 pseF; CMP-pseudaminic acid synthetase K15899 pseF; pseudaminic acid cytidylyltransferase [EC:2.7.7.81]
D CFF04554_1370 pglF; N-acetyl-hexosamine dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D CFF04554_1409 polysaccharide biosynthesis protein K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:cft00550]
D CFF04554_0891 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CFF04554_0205 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CFF04554_0609 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CFF04554_1374 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CFF04554_0063 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CFF04554_0814 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CFF04554_0817 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CFF04554_0757 uppS; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CFF04554_1263 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CFF04554_1375 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CFF04554_0851 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CFF04554_1021 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CFF04554_1209 pbpC; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CFF04554_0711 ftsI; cell division protein FtsI/penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CFF04554_0213 putative D-alanyl-D-alanine carboxypeptidase VanY K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 00552 Teichoic acid biosynthesis [PATH:cft00552]
D CFF04554_1263 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CFF04554_1615 hypothetical protein K21285 tagB; teichoic acid glycerol-phosphate primase [EC:2.7.8.44]
D CFF04554_1611 glycosyltransferase, GT2 family K22708 tarS; poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase [EC:2.4.1.355]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:cft00543]
D CFF04554_1747 membrane bound O-acyl transferase, MBOAT family K19294 algI; alginate O-acetyltransferase complex protein AlgI
D CFF04554_0899 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:cft00730]
D CFF04554_0409 thiC; thiamine biosynthesis protein K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D CFF04554_0967 thiD; hydroxymethylpyrimidine kinase / phosphohydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CFF04554_0074 thiF; thiamin (thiazole moiety) biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D CFF04554_1697 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CFF04554_0076 thiH; ThiGH complex, tyrosine lyase subunit ThiH K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D CFF04554_0264 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CFF04554_0075 thiG; ThiGH complex, thiazole synthase subunit ThiG K03149 thiG; thiazole synthase [EC:2.8.1.10]
D CFF04554_1262 thiE; thiamine phosphate synthase K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CFF04554_0779 thiamine monophosphate synthase/TENI family protein K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CFF04554_0088 thiL; thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D CFF04554_1224 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
C 00740 Riboflavin metabolism [PATH:cft00740]
D CFF04554_1584 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CFF04554_0989 ribAB; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CFF04554_1500 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CFF04554_1351 ribH; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, beta subunit) K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CFF04554_1458 ribE; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, alpha subunit) K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CFF04554_1137 ribF; bifunctional riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CFF04554_1664 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:cft00750]
D CFF04554_0254 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CFF04554_0690 pdxA; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent K00097 pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
D CFF04554_0689 pdxJ; pyridoxine 5'-phosphate synthase K03474 pdxJ; pyridoxine 5-phosphate synthase [EC:2.6.99.2]
D CFF04554_1068 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
C 00760 Nicotinate and nicotinamide metabolism [PATH:cft00760]
D CFF04554_0764 nadA; quinolinate synthase K03517 nadA; quinolinate synthase [EC:2.5.1.72]
D CFF04554_0827 nadC; quinolinate phosphoribosyltransferase K00767 nadC; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19]
D CFF04554_0325 surE; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CFF04554_1443 nadD; nicotinate-mononucleotide adenylyltransferase K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CFF04554_1064 nadE; NAD synthetase, NH3-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D CFF04554_0601 cinA; competence/damage-inducible domain protein K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D CFF04554_0021 nadV; nicotinamide phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
D CFF04554_1222 ppnK; polyphosphate (PolyP)/ATP-dependent NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D CFF04554_0918 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:cft00770]
D CFF04554_0822 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CFF04554_0823 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CFF04554_1154 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CFF04554_1748 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CFF04554_0472 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CFF04554_1385 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CFF04554_1177 coaX; pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D CFF04554_0759 dfp; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CFF04554_0895 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CFF04554_1767 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CFF04554_0923 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CFF04554_0302 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CFF04554_0064 panD; aspartate 1-decarboxylase precursor K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:cft00780]
D CFF04554_0084 bioC; biotin synthesis protein BioC K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D CFF04554_1379 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CFF04554_1377 fabG; 3-oxo-acyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CFF04554_0312 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CFF04554_1439 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CFF04554_0085 hypothetical protein (DUF452 domain) K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D CFF04554_0086 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CFF04554_0504 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CFF04554_0083 bioD; dethiobiotin synthetase K01935 bioD; dethiobiotin synthetase [EC:6.3.3.3]
D CFF04554_0177 bioB; biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CFF04554_1545 birA; biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:cft00790]
D CFF04554_1695 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CFF04554_1034 hypothetical protein (NIF3 domain) K22391 E3.5.4.16; GTP cyclohydrolase I [EC:3.5.4.16]
D CFF04554_1519 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D CFF04554_1140 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CFF04554_0742 folC; bifunctional folypolyglutamate synthetase / dihydrofolate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CFF04554_1584 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CFF04554_0989 ribAB; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CFF04554_1084 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D CFF04554_1085 hypothetical protein K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D CFF04554_0224 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CFF04554_0222 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CFF04554_0105 queC; deazapurine nucleoside (preQ0) biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CFF04554_0005 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CFF04554_0221 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CFF04554_0143 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CFF04554_0193 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CFF04554_0864 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CFF04554_0190 moeA2; molybdenum::molybdopterin ligase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CFF04554_0892 moeA1; molybdenum::molybdopterin ligase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CFF04554_0197 mobA; molybdopterin-guanine dinucleotide synthase K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:cft00670]
D CFF04554_1201 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CFF04554_1168 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CFF04554_1688 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CFF04554_0553 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CFF04554_1546 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CFF04554_1606 formyltransferase domain protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CFF04554_1792 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CFF04554_0828 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D CFF04554_0493 5,10-methenyltetrahydrofolate synthetase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:cft00860]
D CFF04554_1571 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CFF04554_0697 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D CFF04554_1203 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CFF04554_1583 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CFF04554_0700 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CFF04554_1289 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D CFF04554_1472 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CFF04554_1580 hemN2; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D CFF04554_1713 conserved hypothetical membrane protein (UPF0093 domain) K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D CFF04554_0710 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D CFF04554_1754 chuZ; iron-responsive cellular heme oxygenase K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cft00130]
D CFF04554_0218 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D CFF04554_0584 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D CFF04554_1664 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CFF04554_0256 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D CFF04554_1567 mqnA2; 6-amino-6-deoxyfutalosine synthase K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D CFF04554_0578 menaquinone biosynthesis protein, SCO4494 family K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D CFF04554_1516 metallo-dependent hydrolase, subgroup D K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D CFF04554_1527 pfs; 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D CFF04554_0807 mqnC; putative dehypoxanthinylfutalosine cyclase K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D CFF04554_0203 mqnD; putative 1,4-dihydroxy-6-naphthoate synthase K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:cft00900]
D CFF04554_0264 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CFF04554_0210 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CFF04554_0408 ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D CFF04554_0721 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CFF04554_0981 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CFF04554_1278 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D CFF04554_1664 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CFF04554_0068 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CFF04554_0696 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CFF04554_0757 uppS; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CFF04554_1597 transketolase, N-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CFF04554_1598 transketolase, C-terminal subunit K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CFF04554_0069 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis
C 01054 Nonribosomal peptide structures
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:cft00332]
D CFF04554_1547 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CFF04554_0627 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:cft00261]
D CFF04554_0406 sat; ATP sulfurylase (sulfate adenylyltransferase) K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CFF04554_1143 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CFF04554_1474 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CFF04554_0791 dapA; dihydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CFF04554_0296 dapB; dihydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis
D CFF04554_0103 phosphomannomutase/phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis
C 00401 Novobiocin biosynthesis [PATH:cft00401]
D CFF04554_1512 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CFF04554_0349 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D CFF04554_1528 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CFF04554_1377 fabG; 3-oxo-acyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CFF04554_1439 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CFF04554_1378 acpP1; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:cft00999]
D CFF04554_0729 metK; methionine adenosyltransferase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CFF04554_1165 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D CFF04554_0308 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CFF04554_1487 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation [PATH:cft00627]
D CFF04554_0608 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CFF04554_1664 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D CFF04554_0308 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CFF04554_1487 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
D CFF04554_0608 hydrolase, carbon-nitrogen family K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D CFF04554_0308 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CFF04554_1487 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:cft03020]
D CFF04554_1333 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CFF04554_1332 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CFF04554_0059 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CFF04554_1241 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:cft03010]
D CFF04554_1277 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CFF04554_1455 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CFF04554_0039 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CFF04554_0058 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CFF04554_0050 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CFF04554_1158 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CFF04554_1330 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CFF04554_0047 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CFF04554_0387 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CFF04554_0032 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CFF04554_0057 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CFF04554_1331 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CFF04554_0056 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CFF04554_0046 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CFF04554_1083 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CFF04554_1027 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CFF04554_0042 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CFF04554_1160 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CFF04554_0037 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CFF04554_1717 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CFF04554_0124 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CFF04554_1336 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CFF04554_0036 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CFF04554_0033 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CFF04554_0034 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CFF04554_0045 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CFF04554_0048 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CFF04554_1334 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CFF04554_0990 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CFF04554_1335 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CFF04554_1337 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CFF04554_0386 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CFF04554_0043 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CFF04554_0051 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CFF04554_0040 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CFF04554_0060 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CFF04554_0049 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CFF04554_1023 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CFF04554_0115 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CFF04554_1550 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CFF04554_0038 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CFF04554_0035 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CFF04554_0044 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CFF04554_0336 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CFF04554_1549 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CFF04554_0969 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CFF04554_0041 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CFF04554_0285 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CFF04554_0235 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CFF04554_1341 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CFF04554_0545 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CFF04554_0116 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CFF04554_0055 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CFF04554_0153 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0498 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0585 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0155 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CFF04554_0500 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CFF04554_0587 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CFF04554_0156 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CFF04554_0588 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CFF04554_0501 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:cft00970]
D CFF04554_0154 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CFF04554_0586 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CFF04554_1784 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CFF04554_1040 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CFF04554_1328 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CFF04554_1683 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CFF04554_1684 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CFF04554_0206 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CFF04554_1470 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CFF04554_0592 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CFF04554_0596 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CFF04554_1781 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CFF04554_1464 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CFF04554_0594 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CFF04554_0598 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CFF04554_1674 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CFF04554_1344 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CFF04554_0893 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CFF04554_1783 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CFF04554_1685 tRNA-His K14226 tRNA-His; tRNA His
D CFF04554_0499 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CFF04554_0636 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CFF04554_1309 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CFF04554_1682 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CFF04554_1782 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CFF04554_0597 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CFF04554_0590 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CFF04554_0593 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CFF04554_1256 tRNA-Met K14230 tRNA-Met; tRNA Met
D CFF04554_1465 tRNA-Met K14230 tRNA-Met; tRNA Met
D CFF04554_1762 tRNA-Met K14230 tRNA-Met; tRNA Met
D CFF04554_1373 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CFF04554_1686 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CFF04554_1348 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CFF04554_1780 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CFF04554_0142 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CFF04554_1343 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CFF04554_1346 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CFF04554_1340 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CFF04554_1345 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CFF04554_1712 tRNA-Val K14237 tRNA-Val; tRNA Val
D CFF04554_0591 tRNA-Val K14237 tRNA-Val; tRNA Val
D CFF04554_0595 tRNA-Val K14237 tRNA-Val; tRNA Val
D CFF04554_1571 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CFF04554_0106 gltX1; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CFF04554_0604 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CFF04554_0781 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CFF04554_1173 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CFF04554_1018 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CFF04554_1223 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CFF04554_1035 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CFF04554_0832 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CFF04554_1703 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CFF04554_1359 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CFF04554_1557 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CFF04554_0795 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CFF04554_0802 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CFF04554_1546 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CFF04554_1606 formyltransferase domain protein K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CFF04554_0964 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CFF04554_0739 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CFF04554_0603 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CFF04554_1169 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CFF04554_1447 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CFF04554_0698 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CFF04554_0368 hisZ; ATP phosphoribosyltransferase regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CFF04554_0897 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CFF04554_1281 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CFF04554_1280 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CFF04554_1239 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CFF04554_1358 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:cft03060]
D CFF04554_0052 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CFF04554_1339 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CFF04554_1778 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CFF04554_0736 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CFF04554_0737 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CFF04554_0735 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CFF04554_0548 oxaA; 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CFF04554_0571 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CFF04554_1028 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CFF04554_0491 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CFF04554_1448 Sec-independent protein translocase (TatA/E family protein) K03116 tatA; sec-independent protein translocase protein TatA
D CFF04554_1146 tatB; Sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D CFF04554_1147 tatC; Sec-independent protein secretion pathway component K03118 tatC; sec-independent protein translocase protein TatC
D CFF04554_1200 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CFF04554_1715 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:cft04122]
D CFF04554_1697 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CFF04554_1742 putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CFF04554_1494 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CFF04554_0193 moaE; molybdopterin synthase, large subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CFF04554_0221 moaA; molybdenum cofactor biosynthesis protein A K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CFF04554_0194 moaD; molybdopterin synthase, small subunit K03636 moaD; sulfur-carrier protein
D CFF04554_0143 moaC; molybdenum cofactor biosynthesis protein C K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CFF04554_0864 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CFF04554_0073 thiS; thiamine biosynthesis protein K03154 thiS; sulfur carrier protein
D CFF04554_0074 thiF; thiamin (thiazole moiety) biosynthesis protein K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:cft03018]
D CFF04554_1144 nudH; (di)nucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CFF04554_0201 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CFF04554_1284 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CFF04554_0797 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CFF04554_1156 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CFF04554_1434 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CFF04554_0494 hypothetical protein, putative ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CFF04554_1802 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CFF04554_1075 dnaK; chaperone and heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D CFF04554_0709 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CFF04554_0880 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CFF04554_1074 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:cft03030]
D CFF04554_0868 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CFF04554_1267 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CFF04554_1435 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CFF04554_1141 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CFF04554_1157 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CFF04554_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CFF04554_0980 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CFF04554_1741 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CFF04554_1159 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_a0003 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_1739 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CFF04554_0015 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CFF04554_1139 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:cft03410]
D CFF04554_0505 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CFF04554_0114 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CFF04554_0211 tag; DNA-3-methyladenine glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CFF04554_1290 mug; G:T/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D CFF04554_0541 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CFF04554_1721 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CFF04554_1672 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CFF04554_1561 AP endonuclease K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CFF04554_1751 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CFF04554_1139 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:cft03420]
D CFF04554_0745 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CFF04554_0344 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D CFF04554_0876 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D CFF04554_1293 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D CFF04554_0961 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CFF04554_0724 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CFF04554_1139 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:cft03430]
D CFF04554_0617 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D CFF04554_0961 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CFF04554_0724 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CFF04554_0255 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CFF04554_0607 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CFF04554_1751 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CFF04554_1159 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_a0003 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_1267 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CFF04554_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CFF04554_1435 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CFF04554_1157 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CFF04554_1141 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CFF04554_0868 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CFF04554_1139 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:cft03440]
D CFF04554_1751 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CFF04554_1159 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_a0003 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_1164 recR; recombination protein K06187 recR; recombination protein RecR
D CFF04554_0202 recA; recombinase K03553 recA; recombination protein RecA
D CFF04554_0813 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CFF04554_0470 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CFF04554_1813 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CFF04554_0625 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CFF04554_1267 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CFF04554_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CFF04554_1435 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CFF04554_1157 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CFF04554_1141 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CFF04554_0868 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CFF04554_0869 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:cft02010]
D CFF04554_0361 modA; molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CFF04554_0358 modB; molybdenum ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CFF04554_0359 modC; molybdenum ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CFF04554_0117 putative ABC-type iron(III) transporter, periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CFF04554_0118 putative ABC-type iron(III) transporter, periplasmic iron-binding protein K02011 afuB; iron(III) transport system permease protein
D CFF04554_0017 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CFF04554_0364 transporter, toluene tolerance family K07323 mlaC; phospholipid transport system substrate-binding protein
D CFF04554_0466 iamC; ABC transporter, periplasmic substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CFF04554_0468 iamB; ABC transporter, permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CFF04554_0467 iamA; ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CFF04554_0181 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CFF04554_0182 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D CFF04554_0183 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D CFF04554_0184 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CFF04554_1189 amino acid ABC transporter, permease protein PEB1 K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D CFF04554_1190 amino acid ABC transporter, permease protein PEB1 K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D CFF04554_1192 amino acid ABC transporter, ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D CFF04554_0788 amino acid ABC transporter, periplasmic substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CFF04554_0787 amino acid ABC transporter, permease protein K10009 tcyB; L-cystine transport system permease protein
D CFF04554_0786 amino acid ABC transporter, ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D CFF04554_1260 amino acid ABC transporter, periplasmic substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CFF04554_1261 amino acid ABC transporter, periplasmic substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CFF04554_1258 amino acid ABC transporter, permease protein K17077 artQ; arginine/lysine/histidine transport system permease protein
D CFF04554_1259 amino acid ABC transporter, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CFF04554_0398 livK; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CFF04554_0399 livH; high-affinity branched-chain amino acid transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CFF04554_0400 livM; high-affinity branched-chain amino acid transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CFF04554_0401 livG; high-affinity branched-chain amino acid transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CFF04554_0402 livF; high-affinity branched-chain amino acid transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CFF04554_0968 lipoprotein, NlpA family K02073 metQ; D-methionine transport system substrate-binding protein
D CFF04554_0966 ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein
D CFF04554_0965 ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CFF04554_1730 cation ABC transporter, periplasmic-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CFF04554_1727 znuB; zinc ABC transporter, integral membrane protein K09816 znuB; zinc transport system permease protein
D CFF04554_1728 znuC; zinc ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CFF04554_0730 putative Mn2+/Fe2+ ABC transporter, periplasmic substrate-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D CFF04554_0732 putative Mn2+/Fe2+ ABC transporter, permease protein K11605 sitC; manganese/iron transport system permease protein
D CFF04554_0733 putative Mn2+/Fe2+ ABC transporter, permease protein K11606 sitD; manganese/iron transport system permease protein
D CFF04554_0731 putative Mn2+/Fe2+ ABC transporter, ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein
D CFF04554_0172 cbiM; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, membrane protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CFF04554_0174 cbiQ; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, membrane protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CFF04554_0175 cbiO; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D CFF04554_0171 cbiK; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, periplasmic binding protein CbiK K10094 cbiK; nickel transport protein
D CFF04554_0173 cbiL; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, membrane protein CbiL K16915 cbiL; nickel transport protein
D CFF04554_0487 hypothetical protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D CFF04554_0486 ABC transporter-related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D CFF04554_0755 YjgP/YjgQ family permease, possible lipopolysaccharide transport protein K07091 lptF; lipopolysaccharide export system permease protein
D CFF04554_0272 YjgP/YjgQ family permease, possible lipopolysaccharide transport protein K11720 lptG; lipopolysaccharide export system permease protein
D CFF04554_0858 putative lipopolysaccharide ABC transporter, ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CFF04554_1244 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CFF04554_1245 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CFF04554_0794 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CFF04554_0459 sapD; S-layer protein SapD, type I secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CFF04554_0766 macB; macrolide-specific efflux protein, ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CFF04554_1753 multidrug ABC transporter, membrane component/ATP-binding component K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:cft03070]
D CFF04554_0457 sapF; S-layer protein SapF, type I secretion outer membrane protein K12340 tolC; outer membrane protein
D CFF04554_0997 ctsD; transformation system, type II secretion system secretin protein CtsD K02453 gspD; general secretion pathway protein D
D CFF04554_1001 ctsF; transformation system, type II secretion system membrane protein CtsF K02455 gspF; general secretion pathway protein F
D CFF04554_0870 N-terminal methylation domain protein K02456 gspG; general secretion pathway protein G
D CFF04554_0871 N-terminal methylation domain protein K02456 gspG; general secretion pathway protein G
D CFF04554_1000 ctsE; transformation system, type II secretion system ATPase CtsE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D CFF04554_0736 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CFF04554_0737 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CFF04554_1339 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CFF04554_1778 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CFF04554_0052 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CFF04554_0735 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CFF04554_0548 oxaA; 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CFF04554_0571 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CFF04554_0491 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CFF04554_1028 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CFF04554_1448 Sec-independent protein translocase (TatA/E family protein) K03116 tatA; sec-independent protein translocase protein TatA
D CFF04554_1146 tatB; Sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D CFF04554_1147 tatC; Sec-independent protein secretion pathway component K03118 tatC; sec-independent protein translocase protein TatC
D CFF04554_a0002 hypothetical protein K03194 virB1; type IV secretion system protein VirB1
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:cft02020]
D CFF04554_0181 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CFF04554_0067 hypothetical protein (PDZ domain) K04771 degP; serine protease Do [EC:3.4.21.107]
D CFF04554_0771 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CFF04554_1637 flaA; flagellin K02406 fliC; flagellin
D CFF04554_1638 flaB; flagellin K02406 fliC; flagellin
D CFF04554_0512 flaC; flagellin K02406 fliC; flagellin
D CFF04554_1523 fliA; RNA polymerase sigma factor for flagellar operon, sigmaF K02405 fliA; RNA polymerase sigma factor FliA
D CFF04554_0230 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CFF04554_0905 putative tripartite tricarboxylate transport protein TctABC, membrane-spanning subunit TctB K07794 tctB; putative tricarboxylic transport membrane protein
D CFF04554_0904 putative tripartite tricarboxylate transport protein TctABC, extracytoplasmic tricarboxylate-binding receptor TctC K07795 tctC; putative tricarboxylic transport membrane protein
D CFF04554_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CFF04554_0213 putative D-alanyl-D-alanine carboxypeptidase VanY K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CFF04554_0429 two-component system histidine kinase K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D CFF04554_0147 dcuB; anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CFF04554_0722 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
D CFF04554_0579 glnD; PII uridylyltransferase K00990 glnD; [protein-PII] uridylyltransferase [EC:2.7.7.59]
D CFF04554_1042 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CFF04554_0425 C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D CFF04554_0859 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CFF04554_0939 hydC; [NiFe] hydrogenase, cytochrome b subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D CFF04554_0810 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CFF04554_0557 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1030 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1251 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1255 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1326 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1327 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1699 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0065 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0186 major facilitator superfamily transporter K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0191 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0322 PAS sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0332 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CFF04554_0331 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CFF04554_1366 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CFF04554_0811 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CFF04554_0330 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CFF04554_1295 NIT sensor-containing two component system histidine kinase/response regulator fusion protein K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3]
D CFF04554_1460 petA; ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CFF04554_1461 petB; ubiquinol cytochrome c oxidoreductase, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CFF04554_1462 petC; ubiquinol cytochrome c oxidoreductase, cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CFF04554_1431 cytochrome c553 K08738 CYC; cytochrome c
D CFF04554_1429 cytochrome c553 K08738 CYC; cytochrome c
D CFF04554_0377 ccoN; cytochrome c oxidase, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CFF04554_0378 ccoO; cytochrome c oxidase, cbb3-type, subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CFF04554_0379 ccoQ; cytochrome c oxidase, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CFF04554_0380 ccoP; cytochrome c oxidase, cbb3-type, subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CFF04554_0457 sapF; S-layer protein SapF, type I secretion outer membrane protein K12340 tolC; outer membrane protein
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D CFF04554_1460 petA; ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:cft02024]
D CFF04554_0113 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CFF04554_0349 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CFF04554_0626 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CFF04554_a0020 conjugative transfer protein TraB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D CFF04554_a0021 conjugative transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC
D CFF04554_a0022 conjugative transfer protein TrbD K20529 trbD; type IV secretion system protein TrbD
D CFF04554_a0023 conjugative transfer protein TrbE K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D CFF04554_a0026 conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ
D CFF04554_a0028 conjugative transfer protein TrbL K07344 trbL; type IV secretion system protein TrbL
D CFF04554_a0029 conjugative transfer protein TrbF K20531 trbF; type IV secretion system protein TrbF
D CFF04554_a0030 conjugative transfer protein TrbG K20532 trbG; type IV secretion system protein TrbG
D CFF04554_a0032 conjugative transfer protein TrbI K20533 trbI; type IV secretion system protein TrbI
D CFF04554_1088 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CFF04554_1089 ABC-type spermidine/putrescine transport system, permease component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CFF04554_1087 ABC-type spermidine/putrescine transport system, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CFF04554_0398 livK; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CFF04554_0399 livH; high-affinity branched-chain amino acid transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CFF04554_0400 livM; high-affinity branched-chain amino acid transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CFF04554_0401 livG; high-affinity branched-chain amino acid transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CFF04554_0402 livF; high-affinity branched-chain amino acid transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CFF04554_1670 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CFF04554_1731 transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D CFF04554_1584 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CFF04554_1500 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CFF04554_0119 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CFF04554_0548 oxaA; 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CFF04554_1339 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CFF04554_1778 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CFF04554_0052 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CFF04554_0735 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CFF04554_0571 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CFF04554_0491 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CFF04554_1028 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis [PATH:cft02030]
D CFF04554_0557 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1030 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1251 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1255 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1326 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1327 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1699 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0065 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0186 major facilitator superfamily transporter K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0191 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0322 PAS sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0331 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CFF04554_0332 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CFF04554_1366 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CFF04554_0811 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CFF04554_0330 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CFF04554_0810 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CFF04554_0266 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CFF04554_1524 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CFF04554_0355 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CFF04554_1525 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CFF04554_0230 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CFF04554_0231 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CFF04554_0509 hypothetical protein (OmpA/MotB domain) K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:cft02040]
D CFF04554_0712 fliE; flagellar proximal rod protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CFF04554_0267 fliF; flagellar MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CFF04554_0266 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CFF04554_0265 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D CFF04554_1696 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CFF04554_0010 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CFF04554_0924 fliL; flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D CFF04554_1524 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CFF04554_0355 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CFF04554_1525 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CFF04554_0761 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D CFF04554_0204 fliQ; flagellar basal body protein K02420 fliQ; flagellar biosynthesis protein FliQ
D CFF04554_1451 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR
D CFF04554_1081 flhA; flagellar biosynthetic protein K02400 flhA; flagellar biosynthesis protein FlhA
D CFF04554_0342 flhB; flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB
D CFF04554_0894 flgA; flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CFF04554_0714 flgB; flagellar proximal rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CFF04554_0713 flgC; flagellar proximal rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CFF04554_0009 flgD; flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D CFF04554_1764 flgE2; flagellar hook protein, epsilonproteobacterial variant K02390 flgE; flagellar hook protein FlgE
D CFF04554_0008 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D CFF04554_0515 flgG2; flagellar basal body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF
D CFF04554_0516 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D CFF04554_0820 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D CFF04554_0097 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D CFF04554_0098 hypothetical protein, possible flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D CFF04554_0101 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CFF04554_0692 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D CFF04554_1477 conserved hypothetical lipoprotein K09860 flgP; outer membrane protein FlgP
D CFF04554_1476 hypothetical protein K24346 flgQ; flagellar motility protein FlgQ
D CFF04554_1637 flaA; flagellin K02406 fliC; flagellin
D CFF04554_1638 flaB; flagellin K02406 fliC; flagellin
D CFF04554_0512 flaC; flagellin K02406 fliC; flagellin
D CFF04554_0093 fliD; flagellar filament cap protein FliD K02407 fliD; flagellar hook-associated protein 2
D CFF04554_0092 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CFF04554_0230 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CFF04554_0231 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CFF04554_0509 hypothetical protein (OmpA/MotB domain) K02557 motB; chemotaxis protein MotB
D CFF04554_0788 amino acid ABC transporter, periplasmic substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CFF04554_0514 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
D CFF04554_0859 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CFF04554_1523 fliA; RNA polymerase sigma factor for flagellar operon, sigmaF K02405 fliA; RNA polymerase sigma factor FliA
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CFF04554_0201 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:cft01501]
D CFF04554_0783 glycosyl hydrolase, family 3 K01207 nagZ; beta-N-acetylhexosaminidase [EC:3.2.1.52]
D CFF04554_0121 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CFF04554_0120 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CFF04554_0119 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CFF04554_0457 sapF; S-layer protein SapF, type I secretion outer membrane protein K12340 tolC; outer membrane protein
D CFF04554_1021 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CFF04554_1209 pbpC; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CFF04554_0711 ftsI; cell division protein FtsI/penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:cft01502]
D CFF04554_0814 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CFF04554_1589 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CFF04554_0817 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CFF04554_1375 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CFF04554_0851 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CFF04554_0213 putative D-alanyl-D-alanine carboxypeptidase VanY K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cft01503]
D CFF04554_1722 eptA; lipidA/FlgG phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CFF04554_0808 hypothetical protein, putative copper homeostasis protein K06079 cutF; copper homeostasis protein (lipoprotein)
D CFF04554_1237 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CFF04554_0067 hypothetical protein (PDZ domain) K04771 degP; serine protease Do [EC:3.4.21.107]
D CFF04554_0771 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CFF04554_0121 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CFF04554_0120 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CFF04554_0457 sapF; S-layer protein SapF, type I secretion outer membrane protein K12340 tolC; outer membrane protein
D CFF04554_0313 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:cft01000]
C 01001 Protein kinases [BR:cft01001]
D CFF04554_0462 sapB4; surface array protein B K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D CFF04554_0243 cosS; two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_0847 two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_0769 cprS; two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_1163 racS; two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_0449 two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_0429 two-component system histidine kinase K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D CFF04554_1266 flgS; two-component system histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D CFF04554_0331 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CFF04554_1295 NIT sensor-containing two component system histidine kinase/response regulator fusion protein K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:cft01009]
D CFF04554_0958 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CFF04554_0333 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:cft01002]
D CFF04554_1715 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CFF04554_0756 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CFF04554_0938 hydD; [NiFe] hydrogenase maturation protease HydD K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D CFF04554_0125 hycI; hydrogenase maturation protease K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D CFF04554_1291 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CFF04554_1633 hypothetical protein, putative glutamine amidotransferase K23150 E3.5.1.129; N5-(cytidine 5'-diphosphoramidyl)-L-glutamine hydrolase [EC:3.5.1.129]
D CFF04554_0297 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CFF04554_1499 gltB; glutamate synthase (NADPH), large subunit K00265 gltB; glutamate synthase (NADPH) large chain [EC:1.4.1.13]
D CFF04554_0580 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CFF04554_1613 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CFF04554_1619 asparagine synthase (glutamine-hydrolyzing) K01953 asnB; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
D CFF04554_1273 thiJ; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CFF04554_0727 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D CFF04554_0213 putative D-alanyl-D-alanine carboxypeptidase VanY K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CFF04554_1194 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CFF04554_0620 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CFF04554_1060 aminoacyl-histidine dipeptidase K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CFF04554_0053 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CFF04554_1518 pepQ; X-Pro aminopeptidase K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CFF04554_1364 ftsH2; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CFF04554_0863 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CFF04554_1588 htpX; heat shock protein HtpX, M48 family peptidase K03799 htpX; heat shock protein HtpX [EC:3.4.24.-]
D CFF04554_0866 RseP-like zinc metalloprotease K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CFF04554_0067 hypothetical protein (PDZ domain) K04771 degP; serine protease Do [EC:3.4.21.107]
D CFF04554_0771 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CFF04554_1693 clpP; ATP-dependent ClpAP/ClpXP protease, proteolytic subunit ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CFF04554_1047 lon; DNA-binding, ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CFF04554_1200 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CFF04554_0945 ctpA; carboxyl-terminal protease family protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CFF04554_1515 sppA; signal peptide peptidase protease IV K04773 sppA; protease IV [EC:3.4.21.-]
D CFF04554_0991 hslV; heat shock protein HslVU, ATP-dependent protease subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D CFF04554_1038 collagenase-like peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
C 01003 Glycosyltransferases [BR:cft01003]
D CFF04554_1021 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CFF04554_1611 glycosyltransferase, GT2 family K22708 tarS; poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase [EC:2.4.1.355]
D CFF04554_1397 pglA; GalNAc alpha1-3 transferase K15914 pglA; N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase [EC:2.4.1.290]
D CFF04554_1400 pglH; GalNAc alpha1-4 transferase K17249 pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]
D CFF04554_1401 glycosyltransferase, GT1 family K17249 pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]
D CFF04554_1399 pglJ; GlcNAc alpha1-4 transferase K17248 pglJ; N-acetylgalactosamine-N,N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase [EC:2.4.1.291]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:cft01005]
D CFF04554_0313 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CFF04554_0326 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CFF04554_1509 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CFF04554_0824 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CFF04554_0329 hypothetical protein, possible metallophosphatase (YbbF/LpxH family) K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CFF04554_1066 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CFF04554_1412 waaM; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CFF04554_1032 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CFF04554_1722 eptA; lipidA/FlgG phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CFF04554_1354 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CFF04554_1069 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CFF04554_1215 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CFF04554_1801 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CFF04554_1411 waaC; heptosyltransferase I K02841 waaC; lipopolysaccharide heptosyltransferase I [EC:2.4.99.23]
D CFF04554_1610 glycosyltransferase, GT9 family K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CFF04554_1423 heptosyltransferase II K02843 waaF; lipopolysaccharide heptosyltransferase II [EC:2.4.99.24]
D CFF04554_1422 glycosyltransferase, GT1 family K02844 waaG; UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-]
D CFF04554_1421 hypothetical protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
D CFF04554_1414 waaQ; heptosyltransferase III K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CFF04554_1420 glycosyltransferase, GT9 family K02849 waaQ; lipopolysaccharide heptosyltransferase III [EC:2.4.99.25]
D CFF04554_1424 gmhA; sedoheptulose 7-phosphate isomerase K03271 gmhA; D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
D CFF04554_1428 gmhB; D,D-heptose 1,7-bisphosphate phosphatase K03273 gmhB; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83]
D CFF04554_1426 waaE; D,D-heptose 1-phosphate adenosyltransferase/7-phosphate kinase K03272 gmhC; D-beta-D-heptose 7-phosphate kinase / D-beta-D-heptose 1-phosphate adenosyltransferase [EC:2.7.1.167 2.7.7.70]
D CFF04554_1427 waaD; ADP-L-glycero-D-mannoheptose-6-epimerase K03274 gmhD; ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cft01011]
D CFF04554_0891 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CFF04554_0205 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CFF04554_0609 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CFF04554_1374 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CFF04554_0063 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CFF04554_0814 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CFF04554_1589 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CFF04554_0583 murI; glutamate racemase K01776 murI; glutamate racemase [EC:5.1.1.3]
D CFF04554_1375 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CFF04554_0851 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CFF04554_1263 uppP; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CFF04554_0796 mviN; integral membrane protein (MviN family) K03980 murJ; putative peptidoglycan lipid II flippase
D CFF04554_1021 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CFF04554_1209 pbpC; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CFF04554_0711 ftsI; cell division protein FtsI/penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CFF04554_0213 putative D-alanyl-D-alanine carboxypeptidase VanY K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CFF04554_0108 slt; soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CFF04554_1218 mltD; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D CFF04554_0928 YceG-like protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CFF04554_1217 rlpA; rare lipoprotein A K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CFF04554_1237 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:cft01004]
D CFF04554_1528 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CFF04554_0237 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CFF04554_1379 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CFF04554_1377 fabG; 3-oxo-acyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CFF04554_0312 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CFF04554_1439 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CFF04554_1305 acyl-CoA hydrolase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D CFF04554_1670 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CFF04554_0236 plsX; fatty acid / phospholipid synthesis protein K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CFF04554_0240 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CFF04554_0950 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins
C 01006 Prenyltransferases [BR:cft01006]
D CFF04554_0068 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CFF04554_0696 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CFF04554_0757 uppS; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CFF04554_0217 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CFF04554_0218 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:cft01007]
D CFF04554_1571 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CFF04554_0106 gltX1; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CFF04554_1239 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CFF04554_1358 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CFF04554_0795 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CFF04554_1447 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CFF04554_0802 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CFF04554_0603 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CFF04554_0964 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CFF04554_0739 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CFF04554_1169 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CFF04554_1223 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CFF04554_0368 hisZ; ATP phosphoribosyltransferase regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CFF04554_0897 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CFF04554_1035 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CFF04554_0832 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CFF04554_1359 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CFF04554_0698 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CFF04554_1703 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CFF04554_1018 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CFF04554_1281 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CFF04554_1280 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CFF04554_0900 aspB; aspartate aminotransferase, aminotransferase, classes I and II K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CFF04554_0290 aspartate aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D CFF04554_0268 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CFF04554_0086 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CFF04554_0926 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CFF04554_0504 bioA; adenosylmethionine--8-amino-7-oxononanoate aminotransferase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CFF04554_1203 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CFF04554_0558 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CFF04554_0302 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CFF04554_0254 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CFF04554_1605 DegT/DnrJ/EryC1/StrS aminotransferase family protein K13010 per; perosamine synthetase [EC:2.6.1.102]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:cft00194]
D CFF04554_1536 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CFF04554_1537 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CFF04554_1538 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CFF04554_1539 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CFF04554_1540 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CFF04554_1541 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CFF04554_1542 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CFF04554_1308 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CFF04554_0778 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CFF04554_1204 conserved hypothetical ATPase-related protein K02116 atpI; ATP synthase protein I
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:cft03000]
D CFF04554_0122 cmeR; multidrug efflux system CmeABC transcriptional regulator, TetR family K18992 cmeR; TetR/AcrR family transcriptional regulator, cmeABC operon repressor
D CFF04554_0773 hspR; heat shock transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D CFF04554_1170 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CFF04554_1731 transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D CFF04554_0263 perR; peroxide stress transcriptional regulator PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D CFF04554_1049 transcriptional regulator, IclR family K19333 kdgR; IclR family transcriptional regulator, KDG regulon repressor
D CFF04554_0426 transcriptional regulator, Crp family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CFF04554_1082 transcriptional regulator, BadM/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CFF04554_0921 transcriptional regulator, Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D CFF04554_1545 birA; biotin--acetyl-CoA-carboxylase ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CFF04554_0362 modE; transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D CFF04554_0935 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D CFF04554_1269 putA; proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase K13821 putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.5.2 1.2.1.88]
D CFF04554_0478 addiction module antitoxin (RHH domain) K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D CFF04554_1469 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D CFF04554_1543 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CFF04554_1077 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D CFF04554_0249 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:cft03021]
D CFF04554_0059 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CFF04554_1333 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CFF04554_1332 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CFF04554_1241 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CFF04554_0514 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
D CFF04554_0859 rpoN; RNA polymerase sigma54 factor K03092 rpoN; RNA polymerase sigma-54 factor
D CFF04554_1523 fliA; RNA polymerase sigma factor for flagellar operon, sigmaF K02405 fliA; RNA polymerase sigma factor FliA
D CFF04554_1394 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D CFF04554_1350 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D CFF04554_1338 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D CFF04554_0249 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D CFF04554_0327 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CFF04554_1434 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:cft03019]
D CFF04554_1738 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CFF04554_1802 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CFF04554_0494 hypothetical protein, putative ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CFF04554_1156 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CFF04554_0797 putative ATP-dependent RNA helicase K11927 rhlE; ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
D CFF04554_0201 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CFF04554_1284 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CFF04554_1434 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CFF04554_1075 dnaK; chaperone and heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D CFF04554_0709 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CFF04554_0880 ppk; polyphosphate kinase K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CFF04554_1074 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CFF04554_1144 nudH; (di)nucleoside polyphosphate hydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CFF04554_0722 csrA; carbon storage regulator K03563 csrA; carbon storage regulator
C 03041 Spliceosome
C 03011 Ribosome [BR:cft03011]
D CFF04554_1277 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CFF04554_1455 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CFF04554_0039 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CFF04554_0058 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CFF04554_0050 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CFF04554_1158 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CFF04554_1330 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CFF04554_0047 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CFF04554_0387 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CFF04554_0032 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CFF04554_0057 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CFF04554_1331 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CFF04554_0056 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CFF04554_0046 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CFF04554_1083 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CFF04554_1027 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CFF04554_0042 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CFF04554_1160 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CFF04554_0037 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CFF04554_1717 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CFF04554_0124 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CFF04554_1336 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CFF04554_0036 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CFF04554_0033 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CFF04554_0034 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CFF04554_0045 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CFF04554_0048 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CFF04554_0990 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CFF04554_1335 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CFF04554_1337 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CFF04554_1334 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CFF04554_0386 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CFF04554_0043 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CFF04554_0051 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CFF04554_0040 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CFF04554_0060 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CFF04554_0049 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CFF04554_1023 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CFF04554_0115 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CFF04554_1550 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CFF04554_0038 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CFF04554_0035 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CFF04554_0044 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CFF04554_1549 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CFF04554_0969 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CFF04554_0041 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CFF04554_0285 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CFF04554_0235 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CFF04554_1341 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CFF04554_0545 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CFF04554_0116 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CFF04554_0055 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CFF04554_0336 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CFF04554_0156 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CFF04554_0588 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CFF04554_0501 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CFF04554_0153 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0498 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0585 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0155 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CFF04554_0500 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CFF04554_0587 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:cft03009]
D CFF04554_1738 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CFF04554_0993 era; GTP-binding protein K03595 era; GTPase
D CFF04554_1548 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D CFF04554_0249 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D CFF04554_1394 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D CFF04554_1350 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D CFF04554_1338 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D CFF04554_1803 ksgA; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CFF04554_0227 rsmE; 16S rRNA m3U1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CFF04554_1585 gidB; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CFF04554_0562 mraW; S-adenosyl-dependent methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CFF04554_0286 tetrapyrrole methylase family protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CFF04554_1138 tlyA; ribosomal RNA large subunit methyltransferase, FtsJ family, putative hemolysin A protein K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CFF04554_0287 hypothetical protein K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CFF04554_0250 SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CFF04554_1807 rlmN; 23S rRNA m2A2503 methyltransferase, radical SAM enzyme, Cfr family K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CFF04554_1800 rluB; 23S rRNA pseudouridine 2605 synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CFF04554_1031 rluA; 23S RNA-specific pseudouridylate synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CFF04554_1248 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CFF04554_1809 23S rRNA pseudouridine synthase, RluD family K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CFF04554_0188 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CFF04554_1025 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D CFF04554_1386 radical SAM methylthiotransferase, MiaB/RimO family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D CFF04554_1365 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D CFF04554_1151 Holliday junction resolvase-like protein (UPF0081 domain) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CFF04554_1356 engA; GTP-binding protein K03977 engA; GTPase
D CFF04554_1240 spoT; ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CFF04554_1504 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CFF04554_1503 hypothetical protein (DUF150 domain) K09748 rimP; ribosome maturation factor RimP
D CFF04554_1444 ribosome-associated protein (iojap domain) K09710 ybeB; ribosome-associated protein
D CFF04554_0464 metal-dependent hydrolase (UPF0054 domain protein) K07042 ybeY; probable rRNA maturation factor
D CFF04554_1059 sigma-54 modulation protein/ribosomal protein S30EA family K05808 hpf; ribosome hibernation promoting factor
D CFF04554_1193 ychF; GTP-binding protein, putative GTP-dependent translation factor K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:cft03016]
D CFF04554_1006 cca; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D CFF04554_1571 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CFF04554_0698 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CFF04554_0603 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CFF04554_0739 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CFF04554_0802 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CFF04554_1447 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CFF04554_1169 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CFF04554_1223 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CFF04554_1018 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CFF04554_1703 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CFF04554_1359 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CFF04554_0795 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CFF04554_0964 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CFF04554_0368 hisZ; ATP phosphoribosyltransferase regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CFF04554_0897 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CFF04554_1281 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CFF04554_1280 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CFF04554_1239 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CFF04554_1358 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CFF04554_1282 PKCI-related HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CFF04554_1246 trmB; tRNA m7G46 methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CFF04554_1563 putative methyltransferase K15444 TRM9; tRNA (uracil-5-)-methyltransferase TRM9 [EC:2.1.1.229]
D CFF04554_0754 truA; tRNA pseudouridine synthase I K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CFF04554_0723 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CFF04554_0089 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D CFF04554_1697 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CFF04554_0217 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CFF04554_0550 mnmE; tRNA modification GTPase K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CFF04554_1459 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CFF04554_0340 selD; selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CFF04554_0180 cysQ; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CFF04554_0546 rnpA; ribonuclease P, protein component K03536 rnpA; ribonuclease P protein component [EC:3.1.26.5]
D CFF04554_0090 ribonuclease P, RNA component K01978 rnpB; M1 RNA
D CFF04554_1035 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CFF04554_0832 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CFF04554_0106 gltX1; glutamyl-tRNA synthetase K09698 gltX; nondiscriminating glutamyl-tRNA synthetase [EC:6.1.1.24]
D CFF04554_0247 tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CFF04554_1392 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CFF04554_1136 cmoA; tRNA (cmo5U34)-methyltransferase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D CFF04554_1061 cmoB; tRNA (mo5U34)-methyltransferase, SAM-dependent K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D CFF04554_0974 trmA; tRNA m5U54 methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D CFF04554_1024 trmD; tRNA m1G37 methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CFF04554_0829 rRNA methylase, SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CFF04554_0630 hypothetical protein, predicted O-methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D CFF04554_1150 tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family K22901 trm4; tRNA (cytosine40_48-C5)-methyltransferase [EC:2.1.1.-]
D CFF04554_1742 putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CFF04554_1494 mnmA; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CFF04554_1526 adenine nucleotide alpha hydrolase, possible tRNA 2-thiocytidine biosynthesis protein K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CFF04554_1236 mnmC; bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D CFF04554_1148 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CFF04554_0105 queC; deazapurine nucleoside (preQ0) biosynthesis protein QueC K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CFF04554_0224 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CFF04554_0222 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CFF04554_0005 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CFF04554_0311 hypothetical protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D CFF04554_0978 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CFF04554_1387 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CFF04554_1508 metal-dependent protease, putative molecular chaperone K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D CFF04554_0215 gcp; O-sialoglycoprotein endopeptidase K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CFF04554_0857 hypothetical protein, predicted ATPase (UPF0079 domain) K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CFF04554_0324 dinucleotide-utilizing enzyme, molybdopterin/thiamine biosynthesis family 1 K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CFF04554_1156 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CFF04554_1284 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:cft03012]
D CFF04554_1505 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CFF04554_1702 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CFF04554_1454 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D CFF04554_1342 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CFF04554_1329 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CFF04554_1558 selB; selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor
D CFF04554_1718 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CFF04554_1776 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D CFF04554_0536 hemK; protein-(glutamine-N5) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CFF04554_0337 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CFF04554_0054 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CFF04554_1274 efp; translation elongation factor EF-P K02356 efp; elongation factor P
D CFF04554_1384 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:cft03110]
D CFF04554_0717 clpA; ATP-dependent ClpAP protease, ATP-binding subunit ClpA K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D CFF04554_0944 clpB; ATP-dependent Clp protease, ATP-binding subunit K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CFF04554_0314 clpX; ATP-dependent ClpXP protease, ATP-binding subunit ClpX K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CFF04554_0992 hslU; heat shock protein HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D CFF04554_0958 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CFF04554_1075 dnaK; chaperone and heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D CFF04554_0709 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CFF04554_0688 hypothetical protein (DnaJ domain) K03686 dnaJ; molecular chaperone DnaJ
D CFF04554_1161 dnaJ; co-chaperone and heat shock protein K03686 dnaJ; molecular chaperone DnaJ
D CFF04554_0772 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D CFF04554_0552 Dna-J like membrane chaperone protein K05801 djlA; DnaJ like chaperone protein
D CFF04554_1076 grpE; heat shock protein (HSP-70 cofactor) K03687 GRPE; molecular chaperone GrpE
D CFF04554_0708 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D CFF04554_0067 hypothetical protein (PDZ domain) K04771 degP; serine protease Do [EC:3.4.21.107]
D CFF04554_0771 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CFF04554_1364 ftsH2; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CFF04554_0863 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CFF04554_0778 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CFF04554_1592 copper-binding protein (DUF461 domain) K09796 pccA; periplasmic copper chaperone A
D CFF04554_0930 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CFF04554_0934 hypB; hydrogenase nickel insertion protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CFF04554_0424 ppiB; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CFF04554_0564 putative periplasmic folding chaperone K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D CFF04554_1529 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D CFF04554_0506 peb4; major antigenic peptide/PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CFF04554_0293 trx; thioredoxin K03671 TXN; thioredoxin
D CFF04554_1559 putative thioredoxin-like protein, DsbA family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CFF04554_1073 dsbD; thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:cft04131]
D CFF04554_0233 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CFF04554_1442 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CFF04554_0623 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CFF04554_0958 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 04121 Ubiquitin system
C 03051 Proteasome [BR:cft03051]
D CFF04554_0958 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:cft03032]
D CFF04554_1739 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CFF04554_0568 putative helicase, PIF1 family (DUF889 domain) K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D CFF04554_0852 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CFF04554_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CFF04554_0980 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CFF04554_1741 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CFF04554_1159 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_a0003 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_1267 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CFF04554_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CFF04554_1157 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CFF04554_1141 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CFF04554_0868 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CFF04554_1435 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CFF04554_0015 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CFF04554_1139 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CFF04554_1478 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CFF04554_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CFF04554_0176 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:cft03036]
D CFF04554_1738 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CFF04554_0852 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CFF04554_0772 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D CFF04554_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CFF04554_0080 DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D CFF04554_0565 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CFF04554_1245 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CFF04554_0711 ftsI; cell division protein FtsI/penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CFF04554_0693 ftsK; DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CFF04554_0850 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CFF04554_1244 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CFF04554_0566 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CFF04554_1237 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CFF04554_0121 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CFF04554_0315 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CFF04554_0316 mreC; cell wall shape-determining protein K03570 mreC; rod shape-determining protein MreC
D CFF04554_1249 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D CFF04554_a0011 plasmid partitioning protein ParA K03496 parA; chromosome partitioning protein
D CFF04554_1544 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D CFF04554_1543 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CFF04554_1459 mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CFF04554_1585 gidB; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CFF04554_0849 xerH; integrase/recombinase K04763 xerD; integrase/recombinase XerD
D CFF04554_0410 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CFF04554_0640 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D CFF04554_0659 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D CFF04554_0639 Fic family protein K04095 fic; cell filamentation protein, protein adenylyltransferase [EC:2.7.7.108]
D CFF04554_1212 engB; ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:cft03400]
D CFF04554_0988 ogt; O-6-alkylguanine-DNA/cysteine-protein-methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CFF04554_0114 ung; uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CFF04554_0505 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CFF04554_1290 mug; G:T/U mismatch-specific DNA glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
D CFF04554_0541 uracil-DNA glycosylase family protein K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CFF04554_0211 tag; DNA-3-methyladenine glycosylase I, constitutive K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
D CFF04554_1721 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CFF04554_1672 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CFF04554_1561 AP endonuclease K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CFF04554_1751 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CFF04554_1139 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CFF04554_0344 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D CFF04554_0876 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D CFF04554_1293 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D CFF04554_0961 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CFF04554_0724 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CFF04554_1333 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CFF04554_1332 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CFF04554_0059 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CFF04554_1241 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CFF04554_0745 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CFF04554_0617 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D CFF04554_0255 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CFF04554_0607 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CFF04554_1267 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CFF04554_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CFF04554_1157 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CFF04554_1141 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CFF04554_0868 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CFF04554_1435 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CFF04554_1159 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_a0003 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_0202 recA; recombinase K03553 recA; recombination protein RecA
D CFF04554_0813 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CFF04554_0470 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CFF04554_1813 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CFF04554_0869 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CFF04554_0629 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50
D CFF04554_0490 radA; DNA repair and recombination protein K04485 radA; DNA repair protein RadA/Sms
D CFF04554_0625 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CFF04554_1164 recR; recombination protein K06187 recR; recombination protein RecR
D CFF04554_1221 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CFF04554_0384 addB; AddAB recombination complex, helicase AddB K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
D CFF04554_1478 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CFF04554_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CFF04554_0176 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CFF04554_0852 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CFF04554_0418 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D CFF04554_1811 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CFF04554_0028 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:cft03029]
D CFF04554_1461 petB; ubiquinol cytochrome c oxidoreductase, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CFF04554_1505 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CFF04554_1702 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CFF04554_1454 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D CFF04554_1342 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CFF04554_1329 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CFF04554_0993 era; GTP-binding protein K03595 era; GTPase
D CFF04554_1239 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CFF04554_0739 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CFF04554_1223 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CFF04554_1447 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CFF04554_0604 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CFF04554_0781 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CFF04554_1173 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CFF04554_0568 putative helicase, PIF1 family (DUF889 domain) K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D CFF04554_1159 ssb; single-strand DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_a0003 single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CFF04554_1513 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CFF04554_1075 dnaK; chaperone and heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D CFF04554_1076 grpE; heat shock protein (HSP-70 cofactor) K03687 GRPE; molecular chaperone GrpE
D CFF04554_0709 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CFF04554_0708 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D CFF04554_0688 hypothetical protein (DnaJ domain) K03686 dnaJ; molecular chaperone DnaJ
D CFF04554_1161 dnaJ; co-chaperone and heat shock protein K03686 dnaJ; molecular chaperone DnaJ
D CFF04554_1697 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CFF04554_0410 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CFF04554_0548 oxaA; 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CFF04554_1250 cytochrome oxidase biogenesis protein, Sco1/SenC/PrrC family K07152 SCO1; protein SCO1
D CFF04554_0958 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:cft02000]
D CFF04554_0794 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CFF04554_0459 sapD; S-layer protein SapD, type I secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CFF04554_0766 macB; macrolide-specific efflux protein, ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CFF04554_1753 multidrug ABC transporter, membrane component/ATP-binding component K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D CFF04554_0533 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D CFF04554_0361 modA; molybdenum ABC transporter, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CFF04554_0358 modB; molybdenum ABC transporter, permease protein K02018 modB; molybdate transport system permease protein
D CFF04554_0359 modC; molybdenum ABC transporter, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CFF04554_0117 putative ABC-type iron(III) transporter, periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CFF04554_0118 putative ABC-type iron(III) transporter, periplasmic iron-binding protein K02011 afuB; iron(III) transport system permease protein
D CFF04554_0017 ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CFF04554_1088 ABC-type spermidine/putrescine transport system, permease component II K02053 ABC.SP.P; putative spermidine/putrescine transport system permease protein
D CFF04554_1089 ABC-type spermidine/putrescine transport system, permease component K02054 ABC.SP.P1; putative spermidine/putrescine transport system permease protein
D CFF04554_1087 ABC-type spermidine/putrescine transport system, ATP-binding protein K02052 ABC.SP.A; putative spermidine/putrescine transport system ATP-binding protein
D CFF04554_0614 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CFF04554_0613 ABC-type nitrate/sulfonate/bicarbonate transport system, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D CFF04554_0612 ABC-type nitrate/sulfonate/bicarbonate transport system, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D CFF04554_0466 iamC; ABC transporter, periplasmic substrate-binding protein K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CFF04554_0468 iamB; ABC transporter, permease protein K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CFF04554_0467 iamA; ABC transporter, ATP-binding protein K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CFF04554_0465 hypothetical protein K18480 linN; cholesterol transport system auxiliary component
D CFF04554_0364 transporter, toluene tolerance family K07323 mlaC; phospholipid transport system substrate-binding protein
D CFF04554_0181 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CFF04554_0182 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D CFF04554_0183 pstA; phosphate ABC transporter, permease protein K02038 pstA; phosphate transport system permease protein
D CFF04554_0184 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CFF04554_1189 amino acid ABC transporter, permease protein PEB1 K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D CFF04554_1190 amino acid ABC transporter, permease protein PEB1 K10040 peb1B; aspartate/glutamate/glutamine transport system permease protein
D CFF04554_1192 amino acid ABC transporter, ATP-binding protein K10041 peb1C; aspartate/glutamate/glutamine transport system ATP-binding protein [EC:7.4.2.1]
D CFF04554_0788 amino acid ABC transporter, periplasmic substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CFF04554_0787 amino acid ABC transporter, permease protein K10009 tcyB; L-cystine transport system permease protein
D CFF04554_0786 amino acid ABC transporter, ATP-binding protein K10010 tcyC; L-cystine transport system ATP-binding protein [EC:7.4.2.1]
D CFF04554_1260 amino acid ABC transporter, periplasmic substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CFF04554_1261 amino acid ABC transporter, periplasmic substrate-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CFF04554_1258 amino acid ABC transporter, permease protein K17077 artQ; arginine/lysine/histidine transport system permease protein
D CFF04554_1259 amino acid ABC transporter, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CFF04554_0398 livK; high-affinity branched-chain amino acid transporter, periplasmic Leu/Ile/Val-binding protein K01999 livK; branched-chain amino acid transport system substrate-binding protein
D CFF04554_0399 livH; high-affinity branched-chain amino acid transporter, permease protein K01997 livH; branched-chain amino acid transport system permease protein
D CFF04554_0400 livM; high-affinity branched-chain amino acid transporter, permease protein K01998 livM; branched-chain amino acid transport system permease protein
D CFF04554_0401 livG; high-affinity branched-chain amino acid transporter, ATP-binding protein K01995 livG; branched-chain amino acid transport system ATP-binding protein
D CFF04554_0402 livF; high-affinity branched-chain amino acid transporter, ATP-binding protein K01996 livF; branched-chain amino acid transport system ATP-binding protein
D CFF04554_0968 lipoprotein, NlpA family K02073 metQ; D-methionine transport system substrate-binding protein
D CFF04554_0966 ABC transporter, permease protein K02072 metI; D-methionine transport system permease protein
D CFF04554_0965 ABC transporter, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CFF04554_1654 peptide ABC transporter, periplasmic peptide-binding protein K25103 nikZ; nickel transport system substrate-binding protein
D CFF04554_1655 peptide ABC transporter, permease protein K25104 nikY; nickel transport system permease protein
D CFF04554_1656 peptide ABC transporter, permease protein K25105 nikX; nickel transport system permease protein
D CFF04554_1657 peptide ABC transporter, ATP-binding protein K25106 nikW; nickel transport system ATP-binding protein [EC:7.2.2.11]
D CFF04554_1658 peptide ABC transporter, ATP-binding protein K25107 nikV; nickel transport system ATP-binding protein [EC:7.2.2.11]
D CFF04554_1230 ABC transporter, periplasmic substrate-binding protein K02016 ABC.FEV.S; iron complex transport system substrate-binding protein
D CFF04554_0278 ABC transporter, permease protein K02015 ABC.FEV.P; iron complex transport system permease protein
D CFF04554_1228 ABC transporter, ATP-binding protein K02013 ABC.FEV.A; iron complex transport system ATP-binding protein [EC:7.2.2.-]
D CFF04554_1759 chuD; hemin ABC transporter, periplasmic substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D CFF04554_1757 chuB; hemin ABC transporter, permease protein K25027 btuC; cobalamin transport system permease protein
D CFF04554_1758 chuC; hemin ABC transporter, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D CFF04554_1730 cation ABC transporter, periplasmic-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CFF04554_1727 znuB; zinc ABC transporter, integral membrane protein K09816 znuB; zinc transport system permease protein
D CFF04554_1728 znuC; zinc ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CFF04554_0730 putative Mn2+/Fe2+ ABC transporter, periplasmic substrate-binding protein K11604 sitA; manganese/iron transport system substrate-binding protein
D CFF04554_0732 putative Mn2+/Fe2+ ABC transporter, permease protein K11605 sitC; manganese/iron transport system permease protein
D CFF04554_0733 putative Mn2+/Fe2+ ABC transporter, permease protein K11606 sitD; manganese/iron transport system permease protein
D CFF04554_0731 putative Mn2+/Fe2+ ABC transporter, ATP-binding protein K11607 sitB; manganese/iron transport system ATP-binding protein
D CFF04554_0174 cbiQ; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, membrane protein CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CFF04554_0172 cbiM; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, membrane protein CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CFF04554_0175 cbiO; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D CFF04554_0171 cbiK; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, periplasmic binding protein CbiK K10094 cbiK; nickel transport protein
D CFF04554_0173 cbiL; putative ABC-type Co/Ni periplasmic permease CbiKLMQO, membrane protein CbiL K16915 cbiL; nickel transport protein
D CFF04554_0487 hypothetical protein K09690 wzm; homopolymeric O-antigen transport system permease protein
D CFF04554_0486 ABC transporter-related protein K09691 wzt; homopolymeric O-antigen transport system ATP-binding protein [EC:7.5.2.14]
D CFF04554_0755 YjgP/YjgQ family permease, possible lipopolysaccharide transport protein K07091 lptF; lipopolysaccharide export system permease protein
D CFF04554_0272 YjgP/YjgQ family permease, possible lipopolysaccharide transport protein K11720 lptG; lipopolysaccharide export system permease protein
D CFF04554_0858 putative lipopolysaccharide ABC transporter, ATP-binding protein LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CFF04554_0262 ABC transporter, permease protein K25180 ybhR; drug efflux transport system permease protein
D CFF04554_0261 ABC transporter, permease protein K25181 ybhS; drug efflux transport system permease protein
D CFF04554_0260 ABC transporter, ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein
D CFF04554_0259 ABC transporter, membrane fusion protein (HlyD family) K25183 ybhG; membrane fusion protein YbhG
D CFF04554_1244 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CFF04554_1245 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CFF04554_0446 nosY; ABC transporter NosDFY, putative permease protein NosY K01992 ABC-2.P; ABC-2 type transport system permease protein
D CFF04554_0445 nosF; ABC transporter NosDFY, putative ATP-binding protein NosF K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CFF04554_0572 lolE; LolCDE ABC lipoprotein transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CFF04554_0520 ferrirhodotorulic acid ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CFF04554_0521 ferrirhodotorulic acid ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CFF04554_1453 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CFF04554_0522 ferrirhodotorulic acid ABC transporter, ATP binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CFF04554_0345 DASS family divalent anion:sodium (Na+) symporter K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D CFF04554_1029 transporter, sodium:sulfate symporter family K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D CFF04554_0879 MATE efflux family protein K26937 dinF; MATE family, multidrug efflux pump
D CFF04554_1053 fucP; L-fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D CFF04554_0532 major facilitator superfamily transporter K03762 proP; MFS transporter, MHS family, proline/betaine transporter
D CFF04554_0011 drug resistance transporter, Bcr/CflA family K07552 bcr; MFS transporter, DHA1 family, multidrug resistance protein
D CFF04554_0575 major facilitator superfamily transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D CFF04554_0970 putative potassium channel protein (TrkA domain) K10716 kch; voltage-gated potassium channel
D CFF04554_0543 amt; ammonium transporter K03320 amt; ammonium transporter, Amt family
D CFF04554_1779 BAX inhibitor (BI)-1 like protein (UPF0005 domain) K19416 yccA; modulator of FtsH protease
D CFF04554_0389 mscS; small conductance mechanosensitive channel protein K03442 mscS; small conductance mechanosensitive channel
D CFF04554_1735 mechanosensitive ion channel family protein K16052 ynaI; MscS family membrane protein
D CFF04554_0705 Mg/Co/Ni transporter, MgtE family K06213 mgtE; magnesium transporter
D CFF04554_0230 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CFF04554_0231 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CFF04554_0509 hypothetical protein (OmpA/MotB domain) K02557 motB; chemotaxis protein MotB
D CFF04554_0280 exbB1; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CFF04554_1651 exbB3; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CFF04554_0853 exbB2; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CFF04554_1534 tolR; Tol-Pal system subunit TolR K03559 exbD; biopolymer transport protein ExbD
D CFF04554_0854 exbD2; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D CFF04554_1652 exbD3; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D CFF04554_0979 putative CorA-like Mg2+ transporter protein K16074 zntB; zinc transporter
D CFF04554_0951 crcB; camphor resistance CrcB protein K06199 crcB; fluoride exporter
D CFF04554_0151 hypothetical membrane protein (DUF21 domain), possible TlyC family hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CFF04554_0388 cadF; outer membrane fibronectin-binding protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D CFF04554_1671 outer membrane transport protein, OMPP1/FadL/TodX family K06076 fadL; long-chain fatty acid transport protein
D CFF04554_1785 serine protease, subtilase family K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D CFF04554_0878 TonB-dependent siderophore receptor K16088 TC.FEV.OM1; outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid
D CFF04554_1650 cfrA; ferric enterobactin uptake receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D CFF04554_1756 chuA; hemin uptake system outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CFF04554_1046 TonB-dependent copper receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CFF04554_0457 sapF; S-layer protein SapF, type I secretion outer membrane protein K12340 tolC; outer membrane protein
D CFF04554_0119 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CFF04554_1513 outer membrane protein assembly complex, YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CFF04554_1048 comL; DNA uptake lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D CFF04554_0454 sapB1; surface array protein B K21449 ata; trimeric autotransporter adhesin
D CFF04554_0476 sapB6; surface array protein B K21449 ata; trimeric autotransporter adhesin
D CFF04554_1213 putative lipopolysaccharide transporter, periplasmic protein LptA K09774 lptA; lipopolysaccharide export system protein LptA
D CFF04554_1286 organic solvent tolerance protein, possible LPS assembly outer membrane complex protein LptD K04744 lptD; LPS-assembly protein
D CFF04554_1812 amino acid transporter, LysP family K11733 lysP; lysine-specific permease
D CFF04554_0019 Co/Zn/Cd efflux system component K16264 czcD; cobalt-zinc-cadmium efflux system protein
D CFF04554_0525 cation diffusion facilitator family transporter K13283 fieF; ferrous-iron efflux pump FieF
D CFF04554_0120 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CFF04554_1353 putative multidrug resistance protein, SMR family K18924 ykkC; paired small multidrug resistance pump
D CFF04554_1352 putative multidrug resistance protein, SMR family K18925 ykkD; paired small multidrug resistance pump
D CFF04554_0785 rarD; resistance permease RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D CFF04554_1310 conserved hypothetical membrane protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D CFF04554_1745 Na+/H+ antiporter family protein K07084 yuiF; putative amino acid transporter
D CFF04554_1646 anaerobic C4-dicarboxylate transporter K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D CFF04554_0147 dcuB; anaerobic C4-dicarboxylate transporter K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CFF04554_0150 lctP; L-lactate permease K03303 lutP; lactate permease
D CFF04554_0915 C4-dicarboxylate transporter/malic acid transport protein K03304 tehA; tellurite resistance protein
D CFF04554_1270 putP; sodium/proline symporter K11928 putP; sodium/proline symporter
D CFF04554_1304 actP; acetate permease K14393 actP; cation/acetate symporter
D CFF04554_0425 C4-dicarboxylate transport protein K11103 dctA; aerobic C4-dicarboxylate transport protein
D CFF04554_0728 sstT; sodium ion-motive force-driven serine/threonine transporter K07862 sstT; serine/threonine transporter
D CFF04554_0527 gltS; sodium/glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D CFF04554_1752 nhaA2; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D CFF04554_0343 nhaA; Na+/H+ antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D CFF04554_0775 potassium/proton antiporter K11105 cvrA; potassium/hydrogen antiporter
D CFF04554_0774 potassium/proton antiporter K03455 KEA1_2_3; K+:H+ antiporter
D CFF04554_1643 ktrB; TRK system potassium uptake protein K03498 trkH; trk/ktr system potassium uptake protein
D CFF04554_1644 ktrA; TRK system potassium uptake protein K03499 trkA; trk/ktr system potassium uptake protein
D CFF04554_0212 xanthine/uracil permease K02824 uraA; uracil permease
D CFF04554_0577 xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D CFF04554_0422 sdaC; L-serine transporter K03837 sdaC; serine transporter
D CFF04554_1301 Na+/Pi-cotransporter K03324 yjbB; phosphate:Na+ symporter
D CFF04554_1659 arsB; arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D CFF04554_0796 mviN; integral membrane protein (MviN family) K03980 murJ; putative peptidoglycan lipid II flippase
D CFF04554_1016 transporter, CPA/AT superfamily K13936 mdcF; malonate transporter and related proteins
D CFF04554_0763 putative membrane protein, predicted permease K24180 mleP; malate permease and related proteins
D CFF04554_0619 transporter, LysE family K06895 lysE; L-lysine exporter family protein LysE/ArgO
D CFF04554_1011 transporter, LysE family K05834 rhtB; homoserine/homoserine lactone efflux protein
D CFF04554_0943 branched-chain amino acid transport protein, AzlC family K26605 azlC; branched chain amino acid efflux pump
D CFF04554_0942 branched-chain amino acid transport protein, AzlD family K26606 azlD; branched chain amino acid efflux pump
D CFF04554_0905 putative tripartite tricarboxylate transport protein TctABC, membrane-spanning subunit TctB K07794 tctB; putative tricarboxylic transport membrane protein
D CFF04554_0904 putative tripartite tricarboxylate transport protein TctABC, extracytoplasmic tricarboxylate-binding receptor TctC K07795 tctC; putative tricarboxylic transport membrane protein
D CFF04554_0850 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CFF04554_1725 hypothetical membrane protein (DUF204 domain) K23242 mntP; manganese efflux pump family protein
D CFF04554_0517 ferrirhodotorulic acid transporter, inner membrane protein K07243 FTR; high-affinity iron transporter
D CFF04554_0518 p19; ferrirhodotorulic acid transporter, periplasmic substrate-binding protein K07230 p19; periplasmic iron binding protein
D CFF04554_1729 hypothetical protein, putative nickel/cobalt transporter K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D CFF04554_1533 tolA; Tol-Pal system subunit TolA K03832 tonB; periplasmic protein TonB
D CFF04554_1653 tonB3; energy transduction protein TonB K03832 tonB; periplasmic protein TonB
D CFF04554_0855 tonB2; energy transduction protein TonB K03832 tonB; periplasmic protein TonB
D CFF04554_1531 pal; Tol-Pal system peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D CFF04554_1532 tolB; Tol-Pal system translocation protein TolB K03641 tolB; TolB protein
D CFF04554_0427 molybdopterin-binding TMAO/DMSO/BSO reductase K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CFF04554_0458 sapE; S-layer protein SapE, type I secretion inner membrane fusion protein K12537 hasE; membrane fusion protein, type I secretion system
D CFF04554_0121 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CFF04554_0765 macA; macrolide-specific efflux protein, membrane fusion protein MacA K13888 macA; membrane fusion protein, macrolide-specific efflux system
D CFF04554_1322 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D CFF04554_0148 ABC-type long-chain fatty acid transport system, fused permease and ATPase components, SbmA family K17938 sbmA; peptide/bleomycin uptake transporter
C 02044 Secretion system [BR:cft02044]
D CFF04554_0457 sapF; S-layer protein SapF, type I secretion outer membrane protein K12340 tolC; outer membrane protein
D CFF04554_0459 sapD; S-layer protein SapD, type I secretion ATP-binding protein K12536 hasD; ATP-binding cassette, subfamily C, type I secretion system permease/ATPase
D CFF04554_0458 sapE; S-layer protein SapE, type I secretion inner membrane fusion protein K12537 hasE; membrane fusion protein, type I secretion system
D CFF04554_0997 ctsD; transformation system, type II secretion system secretin protein CtsD K02453 gspD; general secretion pathway protein D
D CFF04554_1000 ctsE; transformation system, type II secretion system ATPase CtsE K02454 gspE; general secretion pathway protein E [EC:7.4.2.8]
D CFF04554_1001 ctsF; transformation system, type II secretion system membrane protein CtsF K02455 gspF; general secretion pathway protein F
D CFF04554_0870 N-terminal methylation domain protein K02456 gspG; general secretion pathway protein G
D CFF04554_0871 N-terminal methylation domain protein K02456 gspG; general secretion pathway protein G
D CFF04554_0756 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CFF04554_0335 twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D CFF04554_1172 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D CFF04554_0107 putative membrane protein, YGGT family K02221 yggT; YggT family protein
D CFF04554_0502 HTH domain protein K02237 comEA; competence protein ComEA
D CFF04554_0589 HTH domain protein K02237 comEA; competence protein ComEA
D CFF04554_0768 putative competence locus K02238 comEC; competence protein ComEC
D CFF04554_1484 ctsW; transformation system, predicted amidophosphoribosyltransferase CtsW K02242 comFC; competence protein ComFC
D CFF04554_1081 flhA; flagellar biosynthetic protein K02400 flhA; flagellar biosynthesis protein FlhA
D CFF04554_0342 flhB; flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB
D CFF04554_1208 FlhB domain-containing protein K04061 flhB2; flagellar biosynthesis protein
D CFF04554_0267 fliF; flagellar MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CFF04554_0265 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D CFF04554_1696 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CFF04554_0355 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CFF04554_1525 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CFF04554_0761 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D CFF04554_0204 fliQ; flagellar basal body protein K02420 fliQ; flagellar biosynthesis protein FliQ
D CFF04554_1451 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR
D CFF04554_a0002 hypothetical protein K03194 virB1; type IV secretion system protein VirB1
D CFF04554_1559 putative thioredoxin-like protein, DsbA family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CFF04554_a0020 conjugative transfer protein TraB K20527 trbB; type IV secretion system protein TrbB [EC:7.4.2.8]
D CFF04554_a0021 conjugative transfer protein TrbC K20528 trbC; type IV secretion system protein TrbC
D CFF04554_a0022 conjugative transfer protein TrbD K20529 trbD; type IV secretion system protein TrbD
D CFF04554_a0023 conjugative transfer protein TrbE K20530 trbE; type IV secretion system protein TrbE [EC:7.4.2.8]
D CFF04554_a0029 conjugative transfer protein TrbF K20531 trbF; type IV secretion system protein TrbF
D CFF04554_a0030 conjugative transfer protein TrbG K20532 trbG; type IV secretion system protein TrbG
D CFF04554_a0032 conjugative transfer protein TrbI K20533 trbI; type IV secretion system protein TrbI
D CFF04554_a0026 conjugative transfer protein TrbJ K20266 trbJ; type IV secretion system protein TrbJ
D CFF04554_a0028 conjugative transfer protein TrbL K07344 trbL; type IV secretion system protein TrbL
D CFF04554_1785 serine protease, subtilase family K12685 ssp; subtilase-type serine protease [EC:3.4.21.-]
D CFF04554_0571 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CFF04554_0736 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CFF04554_1339 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CFF04554_0737 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CFF04554_1778 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CFF04554_0052 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CFF04554_1028 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CFF04554_0491 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CFF04554_0735 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CFF04554_0548 oxaA; 60 kDa inner-membrane protein K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CFF04554_1448 Sec-independent protein translocase (TatA/E family protein) K03116 tatA; sec-independent protein translocase protein TatA
D CFF04554_1146 tatB; Sec-independent protein secretion pathway component K03117 tatB; sec-independent protein translocase protein TatB
D CFF04554_1147 tatC; Sec-independent protein secretion pathway component K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:cft02042]
D CFF04554_0957 cdtA3; cytolethal distending toxin, subunit CdtA K11013 cdtA; cytolethal distending toxin subunit A
D CFF04554_0026 cdtA1; cytolethal distending toxin, subunit CdtA K11013 cdtA; cytolethal distending toxin subunit A
D CFF04554_0956 cdtB3; cytolethal distending toxin, subunit CdtB K11014 cdtB; cytolethal distending toxin subunit B
D CFF04554_0953 cdtB2; cytolethal distending toxin, subunit CdtB K11014 cdtB; cytolethal distending toxin subunit B
D CFF04554_0025 cdtB1; cytolethal distending toxin, subunit CdtB K11014 cdtB; cytolethal distending toxin subunit B
D CFF04554_0952 cdtC2; cytolethal distending toxin, subunit CdtC K11015 cdtC; cytolethal distending toxin subunit C
D CFF04554_0955 cdtC3; cytolethal distending toxin, subunit CdtC K11015 cdtC; cytolethal distending toxin subunit C
D CFF04554_0024 cdtC1; cytolethal distending toxin, subunit CdtC K11015 cdtC; cytolethal distending toxin subunit C
D CFF04554_0151 hypothetical membrane protein (DUF21 domain), possible TlyC family hemolysin K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:cft02022]
D CFF04554_0243 cosS; two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_0847 two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_0769 cprS; two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_1163 racS; two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_0449 two-component system histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CFF04554_0242 cosR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CFF04554_0450 two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CFF04554_1162 racR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CFF04554_0770 cprR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CFF04554_0429 two-component system histidine kinase K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D CFF04554_1266 flgS; two-component system histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D CFF04554_1475 flgR; sigma54-dependent response regulator K02481 flgR; two-component system, NtrC family, response regulator
D CFF04554_0331 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CFF04554_1366 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CFF04554_0811 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CFF04554_0330 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CFF04554_1295 NIT sensor-containing two component system histidine kinase/response regulator fusion protein K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:cft02035]
D CFF04554_0331 cheA; chemotaxis sensory histidine kinase K03407 cheA; two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]
D CFF04554_0332 cheW; purine-binding chemotaxis protein CheW K03408 cheW; purine-binding chemotaxis protein CheW
D CFF04554_0810 cheR; MCP protein methyltransferase K00575 cheR; chemotaxis protein methyltransferase CheR [EC:2.1.1.80]
D CFF04554_0811 cheB'; MCP protein-glutamate methylesterase K03412 cheB; two-component system, chemotaxis family, protein-glutamate methylesterase/glutaminase [EC:3.1.1.61 3.5.1.44]
D CFF04554_1366 cheY; chemotaxis regulatory protein K03413 cheY; two-component system, chemotaxis family, chemotaxis protein CheY
D CFF04554_0330 cheV; chemotaxis signal transduction protein CheV K03415 cheV; two-component system, chemotaxis family, chemotaxis protein CheV
D CFF04554_0557 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1030 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1251 MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1255 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1326 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1327 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_1699 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0065 4HB_MCP sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0186 major facilitator superfamily transporter K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0191 Cache1 sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0322 PAS sensor-containing MCP-domain signal transduction protein K03406 mcp; methyl-accepting chemotaxis protein
D CFF04554_0265 fliH; flagellar assembly protein K02411 fliH; flagellar assembly protein FliH
D CFF04554_1696 fliI; flagellum-specific ATP synthase K02412 fliI; flagellum-specific ATP synthase [EC:7.4.2.8]
D CFF04554_0761 fliP; flagellar biosynthesis protein K02419 fliP; flagellar biosynthesis protein FliP
D CFF04554_0204 fliQ; flagellar basal body protein K02420 fliQ; flagellar biosynthesis protein FliQ
D CFF04554_1451 fliR; flagellar biosynthetic protein K02421 fliR; flagellar biosynthesis protein FliR
D CFF04554_1081 flhA; flagellar biosynthetic protein K02400 flhA; flagellar biosynthesis protein FlhA
D CFF04554_0342 flhB; flagellar biosynthetic protein K02401 flhB; flagellar biosynthesis protein FlhB
D CFF04554_0266 fliG; flagellar motor switch protein FliG K02410 fliG; flagellar motor switch protein FliG
D CFF04554_1524 fliM; flagellar motor switch protein K02416 fliM; flagellar motor switch protein FliM
D CFF04554_0355 fliN; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CFF04554_1525 fliY; flagellar motor switch protein K02417 fliN; flagellar motor switch protein FliN
D CFF04554_0267 fliF; flagellar MS-ring protein FliF K02409 fliF; flagellar M-ring protein FliF
D CFF04554_0097 flgI; flagellar P-ring protein FlgI K02394 flgI; flagellar P-ring protein FlgI
D CFF04554_0894 flgA; flagella basal body P-ring formation protein K02386 flgA; flagellar basal body P-ring formation protein FlgA
D CFF04554_0820 flgH; flagellar L-ring protein FlgH K02393 flgH; flagellar L-ring protein FlgH
D CFF04554_0924 fliL; flagellar basal body-associated protein K02415 fliL; flagellar protein FliL
D CFF04554_0712 fliE; flagellar proximal rod protein FliE K02408 fliE; flagellar hook-basal body complex protein FliE
D CFF04554_0010 fliK; flagellar hook-length control protein K02414 fliK; flagellar hook-length control protein FliK
D CFF04554_0714 flgB; flagellar proximal rod protein FlgB K02387 flgB; flagellar basal-body rod protein FlgB
D CFF04554_0713 flgC; flagellar proximal rod protein FlgC K02388 flgC; flagellar basal-body rod protein FlgC
D CFF04554_0009 flgD; flagellar hook assembly protein FlgD K02389 flgD; flagellar basal-body rod modification protein FlgD
D CFF04554_0515 flgG2; flagellar basal body rod protein FlgG K02391 flgF; flagellar basal-body rod protein FlgF
D CFF04554_0516 flgG; flagellar basal body rod protein FlgG K02392 flgG; flagellar basal-body rod protein FlgG
D CFF04554_0098 hypothetical protein, possible flagellar protein FlgJ K02395 flgJ; peptidoglycan hydrolase FlgJ
D CFF04554_1764 flgE2; flagellar hook protein, epsilonproteobacterial variant K02390 flgE; flagellar hook protein FlgE
D CFF04554_0008 flgE; flagellar hook protein K02390 flgE; flagellar hook protein FlgE
D CFF04554_0101 flgK; flagellar hook-associated protein FlgK K02396 flgK; flagellar hook-associated protein 1
D CFF04554_0692 flgL; flagellar hook-associated protein FlgL K02397 flgL; flagellar hook-associated protein 3 FlgL
D CFF04554_1477 conserved hypothetical lipoprotein K09860 flgP; outer membrane protein FlgP
D CFF04554_1476 hypothetical protein K24346 flgQ; flagellar motility protein FlgQ
D CFF04554_1637 flaA; flagellin K02406 fliC; flagellin
D CFF04554_1638 flaB; flagellin K02406 fliC; flagellin
D CFF04554_0512 flaC; flagellin K02406 fliC; flagellin
D CFF04554_0093 fliD; flagellar filament cap protein FliD K02407 fliD; flagellar hook-associated protein 2
D CFF04554_0092 fliS; flagellar protein FliS K02422 fliS; flagellar secretion chaperone FliS
D CFF04554_1523 fliA; RNA polymerase sigma factor for flagellar operon, sigmaF K02405 fliA; RNA polymerase sigma factor FliA
D CFF04554_0230 motA; flagellar motor protein K02556 motA; chemotaxis protein MotA
D CFF04554_0231 motB; flagellar motor protein K02557 motB; chemotaxis protein MotB
D CFF04554_0509 hypothetical protein (OmpA/MotB domain) K02557 motB; chemotaxis protein MotB
D CFF04554_0788 amino acid ABC transporter, periplasmic substrate-binding protein K02424 tcyA; L-cystine transport system substrate-binding protein
D CFF04554_1055 fliW; flagellar assembly protein K13626 fliW; flagellar assembly factor FliW
D CFF04554_0094 flaG; flagellar protein FlaG K06603 flaG; flagellar protein FlaG
D CFF04554_1520 flhF; flagellar biosynthesis (GTP-binding) protein FlhF K02404 flhF; flagellar biosynthesis protein FlhF
D CFF04554_1521 flhG; flagellar biosynthesis protein K04562 flhG; flagellar biosynthesis protein FlhG
D CFF04554_0335 twitching motility protein PilT K02669 pilT; twitching motility protein PilT
D CFF04554_1172 pilT; twitching motility protein K02669 pilT; twitching motility protein PilT
D CFF04554_0756 peptidase A24 N-terminal domain protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:cft04812]
D CFF04554_0315 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CFF04554_0566 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CFF04554_0565 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CFF04554_a0011 plasmid partitioning protein ParA K03496 parA; chromosome partitioning protein
D CFF04554_1544 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D CFF04554_1543 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:cft04147]
D CFF04554_0958 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CFF04554_0201 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CFF04554_1442 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CFF04554_1441 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CFF04554_0623 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CFF04554_0252 ahpC; alkyl hydroperoxide reductase C22 protein, AhpC/TsaA family K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D CFF04554_0709 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CFF04554_1075 dnaK; chaperone and heat shock protein 70 K04043 dnaK; molecular chaperone DnaK
D CFF04554_0079 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CFF04554_0605 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CFF04554_1342 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CFF04554_1282 PKCI-related HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CFF04554_1670 long-chain-fatty-acid--CoA ligase K01897 ACSL; long-chain acyl-CoA synthetase [EC:6.2.1.3]
D CFF04554_1224 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CFF04554_1196 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CFF04554_1321 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CFF04554_0848 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CFF04554_0800 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CFF04554_1042 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CFF04554_1583 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CFF04554_1275 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CFF04554_0553 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CFF04554_1440 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
C 02048 Prokaryotic defense system [BR:cft02048]
D CFF04554_1463 hypothetical protein K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D CFF04554_0318 type II restriction endonuclease, MboI family K01155 E3.1.21.4; type II restriction enzyme [EC:3.1.21.4]
D CFF04554_0833 adenine-specific DNA methyltransferase (EcoRI methylase) K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CFF04554_0319 DNA methylase K00571 E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
D CFF04554_1799 hypothetical protein K07448 mrr; restriction system protein
D CFF04554_0479 addiction module toxin, RelE/StbE family K06218 relE; mRNA interferase RelE/StbE
D CFF04554_0478 addiction module antitoxin (RHH domain) K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D CFF04554_1469 hypothetical protein K18918 relB; RHH-type transcriptional regulator, rel operon repressor / antitoxin RelB
D CFF04554_0462 sapB4; surface array protein B K07154 hipA; serine/threonine-protein kinase HipA [EC:2.7.11.1]
D CFF04554_0566 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CFF04554_0315 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CFF04554_1571 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CFF04554_1697 iscS; cysteine desulfurase/aminotransferase (IscS/NifS) K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides [BR:cft04052]
D CFF04554_0021 nadV; nicotinamide phosphoribosyltransferase K03462 NAMPT; nicotinamide phosphoribosyltransferase [EC:2.4.2.12]
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:cft01504]
D CFF04554_1479 aminoglycoside N3'-acetyltransferase K00662 aacC; aminoglycoside 3-N-acetyltransferase [EC:2.3.1.81]
D CFF04554_0213 putative D-alanyl-D-alanine carboxypeptidase VanY K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]
D CFF04554_0121 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CFF04554_0120 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CFF04554_0119 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CFF04554_0457 sapF; S-layer protein SapF, type I secretion outer membrane protein K12340 tolC; outer membrane protein
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins [BR:cft00536]
D CFF04554_0752 hemagglutinin/hemolysin-related protein K15125 fhaB; filamentous hemagglutinin
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:cft03100]
D CFF04554_0154 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CFF04554_0586 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CFF04554_1784 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CFF04554_1040 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CFF04554_1328 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CFF04554_1683 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CFF04554_1684 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CFF04554_0206 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CFF04554_1470 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CFF04554_0592 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CFF04554_0596 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CFF04554_1781 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CFF04554_1464 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CFF04554_0594 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CFF04554_0598 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CFF04554_1674 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CFF04554_1344 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CFF04554_0893 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CFF04554_1783 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CFF04554_1685 tRNA-His K14226 tRNA-His; tRNA His
D CFF04554_0499 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CFF04554_0636 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CFF04554_1309 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CFF04554_1682 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CFF04554_1782 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CFF04554_0597 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CFF04554_0590 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CFF04554_0593 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CFF04554_1256 tRNA-Met K14230 tRNA-Met; tRNA Met
D CFF04554_1465 tRNA-Met K14230 tRNA-Met; tRNA Met
D CFF04554_1762 tRNA-Met K14230 tRNA-Met; tRNA Met
D CFF04554_1373 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CFF04554_1686 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CFF04554_1348 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CFF04554_1780 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CFF04554_0142 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CFF04554_1343 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CFF04554_1346 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CFF04554_1340 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CFF04554_1345 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CFF04554_1712 tRNA-Val K14237 tRNA-Val; tRNA Val
D CFF04554_0591 tRNA-Val K14237 tRNA-Val; tRNA Val
D CFF04554_0595 tRNA-Val K14237 tRNA-Val; tRNA Val
D CFF04554_0153 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0498 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0585 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CFF04554_0155 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CFF04554_0500 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CFF04554_0587 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CFF04554_0156 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CFF04554_0588 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CFF04554_0501 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CFF04554_0090 ribonuclease P, RNA component K01978 rnpB; M1 RNA
D CFF04554_0474 10Sa RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CFF04554_1788 putative NADPH-quinone reductase (modulator of drug activity B) K03923 mdaB; NADPH dehydrogenase (quinone) [EC:1.6.5.10]
D CFF04554_0611 NADH:flavin oxidoreductase K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1]
D CFF04554_1324 putative azoreductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D CFF04554_1306 msrAB; bifunctional (RS)-methionine sulfoxide reductase A/B K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D CFF04554_1551 ccpA; cytochrome c551 peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D CFF04554_1732 cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D CFF04554_0309 bcp; bacterioferritin comigratory protein, peroxiredoxin Bcp K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CFF04554_1773 tpx; thiol peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CFF04554_0940 hydB; [NiFe] hydrogenase, large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D CFF04554_0941 hydA; [NiFe] hydrogenase, small subunit K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D CFF04554_0023 nrdG; anaerobic ribonucleoside triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CFF04554_0133 hyfB; hydrogenase-4 component B K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D CFF04554_0132 hyfC; hydrogenase-4 component C K12138 hyfC; hydrogenase-4 component C [EC:1.-.-.-]
D CFF04554_0131 hyfE; hydrogenase-4 membrane component E K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D CFF04554_0130 hyfF; hydrogenase-4 component F K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D CFF04554_0030 pcm; L-isoaspartate protein carboxylmethyltransferase, type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D CFF04554_1668 hemN3; oxygen-independent coproporphyrinogen III oxidase K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D CFF04554_0734 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D CFF04554_1226 putative acetyltransferase K03827 yjaB; putative acetyltransferase [EC:2.3.1.-]
D CFF04554_0715 aat; leucyl/phenylalanyl-tRNA--protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D CFF04554_0687 ate; arginyl-tRNA-protein transferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D CFF04554_1419 glycosyltransferase, GT1 family K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D CFF04554_0320 modD; quinolinate phosphoribosyltransferase K03813 modD; molybdenum transport protein [EC:2.4.2.-]
D CFF04554_1398 pglB; oligosaccharide transferase K17251 pglB; undecaprenyl-diphosphooligosaccharide---protein glycotransferase [EC:2.4.99.19]
D CFF04554_0416 lgt; prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CFF04554_1629 adenylylsulfate kinase K23148 E2.7.1.224; cytidine diphosphoramidate kinase [EC:2.7.1.224]
D CFF04554_1632 hypothetical protein K22424 E2.7.3.13; glutamine kinase [EC:2.7.3.13]
D CFF04554_1634 phosphoramidate cytidylyltransferase K01009 E2.7.7.103; L-glutamine-phosphate cytidylyltransferase [EC:2.7.7.103]
D CFF04554_1396 pglC; bacillosamine transferase K15915 pglC; undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase [EC:2.7.8.36]
D CFF04554_0434 astA; arylsulfate sulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D CFF04554_0539 thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CFF04554_0884 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D CFF04554_1219 tatD; TatD-related deoxyribonuclease K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CFF04554_1691 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CFF04554_0029 hydrolase, carbon-nitrogen family K11206 NIT1; deaminated glutathione amidase [EC:3.5.1.128]
D CFF04554_1768 endoribonuclease L-PSP family protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CFF04554_1689 carbohydrate kinase, YjeF related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CFF04554_0419 copA; copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D CFF04554_0887 Fe-S oxidoreductase K18928 lldE; L-lactate dehydrogenase complex protein LldE
D CFF04554_0888 4Fe-4S iron-sulfur cluster-binding protein (DUF162, DUF3390 domains) K18929 lldF; L-lactate dehydrogenase complex protein LldF
D CFF04554_0889 hypothetical protein (DUF162 domain) K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D CFF04554_1698 iscU; FeS cluster assembly scaffold protein IscU K13819 K13819; NifU-like protein
D CFF04554_0129 hyfG; hydrogenase-4 component G K15830 hycE; formate hydrogenlyase subunit 5
D CFF04554_0128 hyfH; hydrogenase-4 component H K15831 hycF; formate hydrogenlyase subunit 6
D CFF04554_0127 hyfI; hydrogenase-4 component I K15832 hycG; formate hydrogenlyase subunit 7
D CFF04554_1182 napD; periplasmic nitrate reductase assembly protein K02570 napD; periplasmic nitrate reductase NapD
D CFF04554_1184 napF; ferredoxin-type protein K02572 napF; ferredoxin-type protein NapF
D CFF04554_0903 flavodoxin K03839 fldA; flavodoxin I
D CFF04554_0112 fldA; flavodoxin K03839 fldA; flavodoxin I
D CFF04554_0805 NapC/NirT cytochrome c family protein K02569 napC; cytochrome c-type protein NapC
D CFF04554_1187 napG; menaquinol dehydrogenase NapGH, periplasmic component NapG K02573 napG; ferredoxin-type protein NapG
D CFF04554_0441 nosG; menaquinol dehydrogenase NosGH, periplasmic component NosG K02573 napG; ferredoxin-type protein NapG
D CFF04554_1186 napH; menaquinol dehydrogenase NapGH, membrane component NapH K02574 napH; ferredoxin-type protein NapH
D CFF04554_0444 nosH; menaquinol dehydrogenase NosGH, membrane component NosH K02574 napH; ferredoxin-type protein NapH
D CFF04554_1382 pyridine nucleotide-disulfide oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D CFF04554_0865 type III pyridoxal 5-phosphate (PLP)-dependent enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D CFF04554_0799 mobB; molybdopterin-guanine dinucleotide biosynthesis protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
C 99999 Others
D CFF04554_1795 DoxX family protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
D CFF04554_0126 hycH; formate hydrogenlyase family maturation protein K15834 hycH; formate hydrogenlyase maturation protein HycH
D CFF04554_0544 nitrogen regulatory protein P-II, GlnB/GlnK K04752 glnK; nitrogen regulatory protein P-II 2
C 99974 Translation
C 99975 Protein processing
D CFF04554_0718 clpS; ATP-dependent Clp protease adaptor protein K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D CFF04554_1694 tig; trigger factor (peptidyl-prolyl cis/trans isomerase, chaperone) K03545 tig; trigger factor
D CFF04554_0720 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CFF04554_0933 hypC; hydrogenase assembly chaperone HypC K04653 hypC; hydrogenase expression/formation protein HypC
D CFF04554_0932 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D CFF04554_0931 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D CFF04554_0936 hypF; [NiFe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D CFF04554_1690 Mg chelatase-related protein K07391 comM; magnesium chelatase family protein
C 99976 Replication and repair
D CFF04554_1015 rmuC; DNA recombination protein K09760 rmuC; DNA recombination protein RmuC
D CFF04554_0748 magIII; 3-methyladenine DNA glycosylase K07457 K07457; endonuclease III related protein
D CFF04554_0292 hypothetical protein (UPF0102 domain) K07460 yraN; putative endonuclease
D CFF04554_1771 rarA; recombination factor protein RarA K07478 ycaJ; putative ATPase
D CFF04554_1410 3'-5' exonuclease, PolB-like protein K07501 K07501; 3'-5' exonuclease
C 99979 Viral proteins
C 99998 Others
D CFF04554_0066 YbaB/EbfC DNA-binding family protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CFF04554_0691 inorganic phosphate transporter, PitA family K03306 TC.PIT; inorganic phosphate transporter, PiT family
D CFF04554_0534 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CFF04554_1318 Na+-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CFF04554_0836 sodium/alanine symporter family protein K03310 TC.AGCS; alanine or glycine:cation symporter, AGCS family
D CFF04554_1179 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
C 99978 Cell growth
D CFF04554_0549 putative RNA-binding protein (Jag domain) K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
C 99995 Signaling proteins
D CFF04554_0072 cstA; carbon starvation protein A, large variant K06200 cstA; carbon starvation protein
D CFF04554_0012 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D CFF04554_1666 putative nucleotide-binding protein (DUF520 domain) K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D CFF04554_0570 lolA; outer membrane lipoprotein carrier protein K03634 lolA; outer membrane lipoprotein carrier protein
D CFF04554_0363 VacJ family lipoprotein K04754 mlaA; phospholipid-binding lipoprotein MlaA
D CFF04554_1485 hypothetical protein K07286 yajG; uncharacterized lipoprotein
D CFF04554_1642 putative autoinducer 2 transporter K11744 tqsA; AI-2 transport protein TqsA
C 99994 Others
D CFF04554_1700 hemerythrin-like metal-binding domain protein K07216 hr; hemerythrin
D CFF04554_0440 nosD; ABC transporter NosDFY, periplasmic copper-binding protein NosD K07218 nosD; nitrous oxidase accessory protein
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CFF04554_1171 conserved hypothetical membrane protein, CvpA family K03558 cvpA; membrane protein required for colicin V production
D CFF04554_1765 putative FlgJ-related protein (Bax domain) K03796 bax; Bax protein
D CFF04554_0366 conserved hypothetical lipoprotein (BON/OsmY domain) K04065 osmY; hyperosmotically inducible periplasmic protein
D CFF04554_0985 ctb; group III truncated hemoglobin K06886 glbN; hemoglobin
D CFF04554_1770 patatin-like phospholipase K07001 K07001; NTE family protein
D CFF04554_0701 rbn; ribonuclease BN K07058 K07058; membrane protein
D CFF04554_1285 hypothetical protein, putative phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D CFF04554_1166 hypothetical protein (sporulation domain) K03749 dedD; DedD protein
D CFF04554_1017 PhnA domain-containing protein K06193 phnA; protein PhnA
C 99997 Function unknown
D CFF04554_0976 hypothetical protein (ankyrin domain) K06867 K06867; uncharacterized protein
D CFF04554_1044 hypothetical protein (ankyrin domain) K06867 K06867; uncharacterized protein
D CFF04554_1247 fibronectin type III domain-containing protein K06882 K06882; uncharacterized protein
D CFF04554_1265 hypothetical protein (DUF234 domain) K06921 K06921; uncharacterized protein
D CFF04554_0747 ATPase (AAA+ superfamily, DUF815 domain) K06923 K06923; uncharacterized protein
D CFF04554_0750 CoA-binding domain protein K06929 K06929; uncharacterized protein
D CFF04554_0631 hypothetical protein K06940 K06940; uncharacterized protein
D CFF04554_1026 putative RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein
D CFF04554_0365 RND superfamily exporter K07003 K07003; uncharacterized protein
D CFF04554_0346 hypothetical protein, sulfite exporter TauE/SafE family K07090 K07090; uncharacterized protein
D CFF04554_0347 hypothetical protein, sulfite exporter TauE/SafE family K07090 K07090; uncharacterized protein
D CFF04554_0777 putative membrane protein, TauE/SafE family permease K07090 K07090; uncharacterized protein
D CFF04554_0902 phosphatase, PhoX family (DUF839 domain) K07093 K07093; uncharacterized protein
D CFF04554_1080 DHH-type phosphohydrolase K07097 K07097; uncharacterized protein
D CFF04554_1180 metallophosphatase K07098 K07098; uncharacterized protein
D CFF04554_0581 conserved hypothetical membrane protein, YedE family K07112 K07112; uncharacterized protein
D CFF04554_0187 putative selenium metabolism protein, YedE family K07112 K07112; uncharacterized protein
D CFF04554_1253 putative NADH-flavin reductase K07118 K07118; uncharacterized protein
D CFF04554_0018 TPR repeat protein, Sel1 subfamily K07126 K07126; uncharacterized protein
D CFF04554_0482 putative ATPase (AAA+ superfamily) K07133 K07133; uncharacterized protein
D CFF04554_0014 ATPase, AAA family protein K07133 K07133; uncharacterized protein
D CFF04554_1033 zinc ribbon domain protein (DUF164 domain) K07164 K07164; uncharacterized protein
D CFF04554_0547 membrane protein insertion efficiency factor K08998 K08998; uncharacterized protein
D CFF04554_0157 hypothetical protein (DrsE domain) K09004 K09004; uncharacterized protein
D CFF04554_1004 hypothetical protein, GatB/YqeY family K09117 K09117; uncharacterized protein
D CFF04554_1620 hypothetical protein (DUF354 domain) K09726 K09726; uncharacterized protein
D CFF04554_0374 conserved hypothetical membrane protein K09792 K09792; uncharacterized protein
D CFF04554_0972 hypothetical protein (DUF465 domain) K09794 K09794; uncharacterized protein
D CFF04554_1744 hypothetical protein (DUF541 domain) K09797 K09797; uncharacterized protein
D CFF04554_1153 polysaccharide deacetylase family protein K09798 K09798; uncharacterized protein
D CFF04554_0016 hypothetical membrane protein (DUF475 domain) K09799 K09799; uncharacterized protein
D CFF04554_0372 hypothetical protein (DUF507 domain) K09804 K09804; uncharacterized protein
D CFF04554_0635 hypothetical protein (DUF328 domain) K09861 K09861; uncharacterized protein
D CFF04554_0977 hypothetical protein (putative TrkA domain) K09944 K09944; uncharacterized protein
D CFF04554_1297 hypothetical protein, pyridoxine 5'-phosphate oxidase family K09979 K09979; uncharacterized protein
D CFF04554_1311 hypothetical protein K09981 K09981; uncharacterized protein
D CFF04554_0189 hypothetical protein (DUF2156 domain) K01163 K01163; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 24, 2024