+F Repair protein KO #

  DNA Repair and Recombination Proteins - Cystobacter fuscus

% ! AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D CYFUS_008927 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CYFUS_000365 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E CYFUS_000978 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CYFUS_008899 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CYFUS_007331 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CYFUS_008836 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CYFUS_002113 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CYFUS_005032 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D CYFUS_002853 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_007799 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_009514 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_005075 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_003696 5-methyl-dCTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_000440 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_007722 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D CYFUS_008927 cysteine methyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D CYFUS_008380 AraC family transcriptional regulator K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] D CYFUS_000365 deoxyribodipyrimidine photo-lyase K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D CYFUS_007519 hypothetical protein K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E CYFUS_000978 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E CYFUS_008886 mismatch-specific DNA-glycosylase K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] E CYFUS_005696 uracil-DNA glycosylase family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CYFUS_004672 uracil-DNA glycosylase K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] E CYFUS_002282 DNA-3-methyladenine glycosylase II K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CYFUS_008928 adenosine deaminase K13529 ada-alkA; AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:3.2.2.21] E CYFUS_008899 3-methyladenine DNA glycosylase K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E CYFUS_007331 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E CYFUS_008751 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CYFUS_008258 formamidopyrimidine-DNA glycosylase K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E CYFUS_008836 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CYFUS_002113 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] E CYFUS_005032 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E CYFUS_007022 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CYFUS_005418 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E CYFUS_000689 endonuclease V K05982 E3.1.21.7; deoxyribonuclease V [EC:3.1.21.7] D RecJ E CYFUS_006122 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E CYFUS_007856 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E CYFUS_006270 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E CYFUS_002492 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CYFUS_003897 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A E CYFUS_002938 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A E CYFUS_002971 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E CYFUS_003422 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CYFUS_002972 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E CYFUS_007318 helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYFUS_002213 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYFUS_002748 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYFUS_006270 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E CYFUS_007856 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F CYFUS_006287 DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F CYFUS_006286 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F CYFUS_004213 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F CYFUS_006652 DNA-directed RNA polymerase subunit omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F CYFUS_001380 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E CYFUS_004741 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E CYFUS_003765 Recombination inhibitory protein MutS2 K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E CYFUS_004249 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases E CYFUS_006045 exodeoxyribonuclease VII large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E CYFUS_006044 exodeoxyribonuclease VII small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E CYFUS_008103 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E CYFUS_000322 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E CYFUS_003325 DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E CYFUS_003324 DNA polymerase III delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E CYFUS_002434 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E CYFUS_007856 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E CYFUS_007318 helicase UvrD K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYFUS_002213 ATP-dependent DNA helicase UvrD/PcrA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYFUS_002748 UvrD/REP helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E CYFUS_001426 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E CYFUS_004835 very short patch repair endonuclease K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E CYFUS_002034 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E CYFUS_002123 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E CYFUS_005507 RecA protein K03553 recA; recombination protein RecA E CYFUS_006782 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CYFUS_006779 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CYFUS_006783 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E CYFUS_002110 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E CYFUS_001272 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E CYFUS_001271 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E CYFUS_002034 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E CYFUS_002123 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E CYFUS_005507 RecA protein K03553 recA; recombination protein RecA E CYFUS_001807 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E CYFUS_009659 DNA recombination protein RecF K03629 recF; DNA replication and repair protein RecF E CYFUS_004256 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CYFUS_000398 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CYFUS_000542 hypothetical protein K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CYFUS_000953 transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CYFUS_008854 ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E CYFUS_006122 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E CYFUS_006279 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E CYFUS_002431 recombination protein RecR K06187 recR; recombination protein RecR E CYFUS_007134 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E CYFUS_007272 hypothetical protein K03554 rdgC; recombination associated protein RdgC E CYFUS_006782 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E CYFUS_006779 Holliday junction DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E CYFUS_006783 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins E CYFUS_002948 ATP-dependent DNA helicase, UvrD/REP family K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-] E CYFUS_002947 hypothetical protein K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-] D Other HR factor D Archaeal homologous recombinant proteins E CYFUS_001272 exonuclease SbcC K03546 sbcC; DNA repair protein SbcC/Rad50 E CYFUS_001271 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex E CYFUS_001959 DNA ligase K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F CYFUS_000981 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CYFUS_002775 Topoisomerase IV subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F CYFUS_009631 DNA gyrase subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CYFUS_002774 DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F CYFUS_004629 DNA topoisomerase IB (poxvirus type) K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F CYFUS_002116 integration host factor K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F CYFUS_006122 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F CYFUS_006279 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F CYFUS_002431 recombination protein RecR K06187 recR; recombination protein RecR F CYFUS_007856 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator F CYFUS_004680 integration host factor subunit alpha K04764 ihfA; integration host factor subunit alpha F CYFUS_007861 integration host factor subunit beta K05788 ihfB; integration host factor subunit beta E Supressor F CYFUS_002474 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CYFUS_005158 ATP-dependent DNA helicase RecQ family K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F CYFUS_002492 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CYFUS_003897 excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A F CYFUS_002938 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A F CYFUS_002971 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D CYFUS_002826 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D CYFUS_002034 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D CYFUS_002123 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D CYFUS_005507 RecA protein K03553 recA; recombination protein RecA D CYFUS_004407 repressor LexA K01356 lexA; repressor LexA [EC:3.4.21.88] D CYFUS_007134 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D CYFUS_005506 hypothetical protein K14161 imuB; protein ImuB D CYFUS_005437 error-prone DNA polymerase K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D CYFUS_001426 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D CYFUS_006171 regulatory protein RecX K03565 recX; regulatory protein D CYFUS_007313 regulatory protein RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase D CYFUS_003302 phosphoesterase K02347 polX; DNA polymerase (family X) C DNA helicases D CYFUS_009277 DNA damage-inducible protein DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CYFUS_008053 DNA damage-inducible protein DinG K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D CYFUS_001863 DNA ligase-associated DEXH box helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] D CYFUS_001300 ATP-dependent DNA helicase K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D CYFUS_002853 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_007799 NUDIX domain-containing protein K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_009514 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_005075 DNA mismatch repair protein MutT K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_003696 5-methyl-dCTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_000440 NUDIX hydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D CYFUS_007722 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D CYFUS_006565 ribonucleotide reductase of class II (coenzyme B12-dependent) K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CYFUS_002032 ribonucleotide reductase of class Ia (aerobic), subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D CYFUS_002031 ribonucleoside-diphosphate reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024