+F Repair protein KO #

  DNA Repair and Recombination Proteins - Corynebacterium glutamicum ATCC 13032 (Bielefeld)

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair D cg3331 ogt; METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D cg0728 phr; DEOXYRIBODIPYRIMIDINE PHOTOLYASE K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] C BER (base exicision repair) D DNA glycosylases E cg1496 ung; PROBABLE URACIL-DNA GLYCOSYLASE PROTEIN K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E cg0151 mag; PUTATIVE 3-METHYLPURINE DNA GLYCOSYLASE K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E cg2955 mutY; A/G-SPECIFIC ADENINE GLYCOSYLASE K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E cg0353 nth; PROBABLE ENDONUCLEASE III PROTEIN K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex E cg0933 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D cg1303 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cg1218 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cg1241 hypothetical protein predicted by Glimmer/Critica K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cg3043 NTP pyrophosphohydrolase/oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cg2086 dut; PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHY K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair D cg3331 ogt; METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] D cg0728 phr; DEOXYRIBODIPYRIMIDINE PHOTOLYASE K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] D cg0181 PUTATIVE DNA REPAIR PROTEIN K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] C BER (base exicision repair) D DNA glycosylases E cg1496 ung; PROBABLE URACIL-DNA GLYCOSYLASE PROTEIN K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E cg0151 mag; PUTATIVE 3-METHYLPURINE DNA GLYCOSYLASE K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] E cg2955 mutY; A/G-SPECIFIC ADENINE GLYCOSYLASE K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E cg3140 tagA1; PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE I PROTEIN K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E cg0182 tagA2; PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE I PROTEIN K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] E cg2272 mutM1; FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E cg3328 mutM2; PROBABLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE PROTEIN K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] E cg0969 nei; ENDONUCLEASE VIII REMOVING OXIDIZED PYRIMIDINES MA K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] E cg0353 nth; PROBABLE ENDONUCLEASE III PROTEIN K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E cg3036 xthA; EXODEOXYRIBONUCLEASE III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] E cg0773 PUTATIVE EXODEOXYRIBONUCLEASE K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E cg1956 recJ; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E cg1401 ligA; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E cg1525 polA; DNA POLYMERASE I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E cg1560 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A E cg1550 uvrB; EXCINUCLEASE ABC SUBUNIT B K03702 uvrB; excinuclease ABC subunit B E cg1795 uvrC; Nuclease subunit of the excinuclease ABC complex K03703 uvrC; excinuclease ABC subunit C E cg0976 pcrA; ATP-DEPENDENT HELICASE PCRA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cg0889 PUTATIVE DNA HELICASE RECQ K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cg0886 PROBABLE DNA HELICASE II PROTEIN K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cg1525 polA; DNA POLYMERASE I K02335 polA; DNA polymerase I [EC:2.7.7.7] E cg1401 ligA; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F cg0576 rpoB; DNA-DIRECTED RNA POLYMERASE BETA CHAIN K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F cg0577 rpoC; DNA-DIRECTED RNA POLYMERASE BETA' CHAIN K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F cg0655 rpoA; DNA-DIRECTED RNA POLYMERASE ALPHA SUBUNIT K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] F cg1809 DNA-directed RNA polymerase subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F cg1099 mfd; PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors D Molecular matchmaker D Strand discrimination factor D DNA exonucleases E cg1163 xseA; EXODEOXYRIBONUCLEASE VII LARGE SUBUNIT K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] E cg1162 xseB; PUTATIVE EXODEOXYRIBONUCLEASE PROTEIN K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] D DNA polymerase III holoenzyme E cg2338 dnaE1; PUTATIVE DNA POLYMERASE III, ALPHA CHAIN K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E cg1400 putative DNA polymerase III alpha subunit, the Gram-positive type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E cg0004 dnaN; DNA POLYMERASE III, BETA SUBUNIT K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E cg2576 putative DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E cg0376 dnaX; PUTATIVE DNA POLYMERASE III, DELTA' SUBUNIT K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E cg2321 DNA polymerase III epsilon subunit or related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E cg1457 dnaQ2; DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E cg0302 DNA polymerase III epsilon subunit or related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E cg0296 dnaZX; DNA POLYMERASE III GAMMA AND TAU SUBUNITS K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E cg1401 ligA; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E cg0976 pcrA; ATP-DEPENDENT HELICASE PCRA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cg0889 PUTATIVE DNA HELICASE RECQ K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cg0886 PROBABLE DNA HELICASE II PROTEIN K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E cg3307 ssb; SINGLE-STRANDED DNA-BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein E cg2697 SINGLE-STRAND DNA BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E cg2141 recA; DNA RECOMBINATION/REPAIR K03553 recA; recombination protein RecA E cg1870 ruvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E cg1869 ruvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E cg1871 ruvC; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E cg1805 priA; Primosomal protein N' (replication factor Y)-superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] D RecFOR pathway proteins E cg2141 recA; DNA RECOMBINATION/REPAIR K03553 recA; recombination protein RecA E cg2950 radA; PROBABLE ATP-DEPENDENT PROTEASE, DNA REPAIR (ATP-B K04485 radA; DNA repair protein RadA/Sms E cg0005 recF; DNA REPAIR AND GENETIC RECOMBINATION PROTEIN K03629 recF; DNA replication and repair protein RecF E cg1498 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E cg0039 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E cg1956 recJ; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E cg2509 recO; Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O) E cg0298 recR; DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR E cg1602 recN; DNA REPAIR PROTEIN RECN K03631 recN; DNA repair protein RecN (Recombination protein N) E cg1870 ruvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA E cg1869 ruvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E cg1871 ruvC; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F cg0015 gyrA; DNA TOPOISOMERASE (ATP-HYDROLYSING) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F cg0007 gyrB; DNA GYRASE SUBUNIT B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F cg0373 topA; DNA TOPOISOMERASE K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F cg1956 recJ; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F cg2509 recO; Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O) F cg0298 recR; DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR F cg1401 ligA; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F cg1018 PROBABLE ATP-DEPENDENT DNA HELICASE PROTEIN K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F cg1560 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A F cg1550 uvrB; EXCINUCLEASE ABC SUBUNIT B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D cg2355 dinP; Nucleotidyltransferase/DNA polymerase involved in DNA repair, DinP homolog K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D cg2141 recA; DNA RECOMBINATION/REPAIR K03553 recA; recombination protein RecA D cg2114 lexA; PUTATIVE LEXA REPRESSOR TRANSCRIPTION REGULATOR PROTEIN K01356 lexA; repressor LexA [EC:3.4.21.88] D cg1602 recN; DNA REPAIR PROTEIN RECN K03631 recN; DNA repair protein RecN (Recombination protein N) D cg0714 polymerase involved in DNA repair K14161 imuB; protein ImuB D cg0738 dnaE2; PUTATIVE DNA POLYMERASE III ALPHA CHAIN K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] D cg3307 ssb; SINGLE-STRANDED DNA-BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein D cg2697 SINGLE-STRAND DNA BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein D cg2140 recX; regulatory protein involved in DNA repair, RecX family K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases D cg2776 dinG; PROBABLE ATP-DEPENDENT DNA HELICASE-RELATED PROTEIN K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] D cg0968 PUTATIVE ATP-DEPENDENT HELICASE K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] C Modulation of nucleotide pools D cg1303 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cg1218 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cg1241 hypothetical protein predicted by Glimmer/Critica K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cg3043 NTP pyrophosphohydrolase/oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] D cg1490 NTP pyrophosphohydrolases including oxidative damage repair enzymes K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] D cg1607 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] D cg2086 dut; PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHY K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D cg2786 nrdE; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D cg2781 nrdF; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D cg2174 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024