+F Repair protein KO
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DNA Repair and Recombination Proteins - Corynebacterium glutamicum ATCC 13032 (Bielefeld)
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AEukaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D cg3331 ogt; METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D cg0728 phr; DEOXYRIBODIPYRIMIDINE PHOTOLYASE K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
C BER (base exicision repair)
D DNA glycosylases
E cg1496 ung; PROBABLE URACIL-DNA GLYCOSYLASE PROTEIN K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E cg0151 mag; PUTATIVE 3-METHYLPURINE DNA GLYCOSYLASE K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E cg2955 mutY; A/G-SPECIFIC ADENINE GLYCOSYLASE K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E cg0353 nth; PROBABLE ENDONUCLEASE III PROTEIN K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
D Long Patch-BER factors
E DNA polymerase delta complex
E DNA polymerase epsilon complex
D Short Patch-BER factors
D Other BER factors
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E XPC-HR23B-CETN2 complex
E Cul4-DDB2 complex
E NER4 complex
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase II complex
E Cul4-CSA complex
E Other TCR factor
D TFIIH complex
E cg0933 DNA or RNA helicase of superfamily II K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4]
D RPA (replication factor A)
D Other NER factors
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D MutL homologs
D DNA polymerase delta complex
D RPA (replication factor A)
D RFC (replication factor C)
D Other MMR factors
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D MRN(MRX) complex
D BRCA1-core complex
D BRCA1-A complex
D BRCA1-B complex
D BRCA1-C complex
D BRCA complex
D RecA family proteins
D Rad52 family proteins
D Rad54 family proteins
D RecQ family DNA helicases
D Bloom's syndrome complex (BTR)
D RPA (replication factor A)
D Protein phosphatase 4
D AP-5 complex
D SMC5-SMC6 complex
D Other HR factors
C NHEJ (non-homologous end-joining)
D DNA-PK complex
D MRX complex
D DNA Ligase 4 complex
D X-family DNA polymerases
D Other NHEJ factors
C FA (Fanconi anemia) pathway
D FA core complex
D FA core complex binding factors
D Bloom's syndrome complex (BTR)
D FANCD2-I complex
D Downstream FA components
D Other FA pathway factors
C Other DSBR factors
D Protein phosphatase 6
D Ubiquitin ligases
D Others
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
C B-family DNA polymerases
C A-family DNA polymerase
C Rad6 epistasis group
C Other TLS factors
B Check point factors
C Rad9-Hus1-Rad1 complex
C HRAD17(Rad24)-RFC complex
C Rad17-Mec3-Ddc1 complex
C FPC (fork protection complex)
C Triple T complex
C BAG6-UBL4A-GET4 complex
C Other check point factors
B Other factors with a suspected DNA repair function
C DNA polymerases
C Nucleases
C Helicases
C PSO4 complex
C Modulation of nucleotide pools
D cg1303 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D cg1218 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D cg1241 hypothetical protein predicted by Glimmer/Critica K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D cg3043 NTP pyrophosphohydrolase/oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D cg2086 dut; PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHY K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
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AProkaryotic type
B SSBR (single strand breaks repair)
C Direct repair
D cg3331 ogt; METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D cg0728 phr; DEOXYRIBODIPYRIMIDINE PHOTOLYASE K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
D cg0181 PUTATIVE DNA REPAIR PROTEIN K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
C BER (base exicision repair)
D DNA glycosylases
E cg1496 ung; PROBABLE URACIL-DNA GLYCOSYLASE PROTEIN K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
E cg0151 mag; PUTATIVE 3-METHYLPURINE DNA GLYCOSYLASE K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
E cg2955 mutY; A/G-SPECIFIC ADENINE GLYCOSYLASE K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
E cg3140 tagA1; PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE I PROTEIN K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E cg0182 tagA2; PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE I PROTEIN K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
E cg2272 mutM1; FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E cg3328 mutM2; PROBABLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE PROTEIN K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
E cg0969 nei; ENDONUCLEASE VIII REMOVING OXIDIZED PYRIMIDINES MA K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
E cg0353 nth; PROBABLE ENDONUCLEASE III PROTEIN K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D AP endonucleases
E cg3036 xthA; EXODEOXYRIBONUCLEASE III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
E cg0773 PUTATIVE EXODEOXYRIBONUCLEASE K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D RecJ
E cg1956 recJ; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D DNA ligase
E cg1401 ligA; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D DNA polymerase I
E cg1525 polA; DNA POLYMERASE I K02335 polA; DNA polymerase I [EC:2.7.7.7]
C NER (nucleotide excision repair)
D GGR (global genome repair) factors
E cg1560 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
E cg1550 uvrB; EXCINUCLEASE ABC SUBUNIT B K03702 uvrB; excinuclease ABC subunit B
E cg1795 uvrC; Nuclease subunit of the excinuclease ABC complex K03703 uvrC; excinuclease ABC subunit C
E cg0976 pcrA; ATP-DEPENDENT HELICASE PCRA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E cg0889 PUTATIVE DNA HELICASE RECQ K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E cg0886 PROBABLE DNA HELICASE II PROTEIN K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E cg1525 polA; DNA POLYMERASE I K02335 polA; DNA polymerase I [EC:2.7.7.7]
E cg1401 ligA; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D TCR (transcription coupled repair) factors
E DNA-directed RNA polymerase complex (RNAP)
F cg0576 rpoB; DNA-DIRECTED RNA POLYMERASE BETA CHAIN K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
F cg0577 rpoC; DNA-DIRECTED RNA POLYMERASE BETA' CHAIN K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
F cg0655 rpoA; DNA-DIRECTED RNA POLYMERASE ALPHA SUBUNIT K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
F cg1809 DNA-directed RNA polymerase subunit K/omega K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
E TRCF (transcription-repair coupling factor)
F cg1099 mfd; PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
C MMR (mismatch excision repair)
D Mismatch and loop recognition factors
D Molecular matchmaker
D Strand discrimination factor
D DNA exonucleases
E cg1163 xseA; EXODEOXYRIBONUCLEASE VII LARGE SUBUNIT K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
E cg1162 xseB; PUTATIVE EXODEOXYRIBONUCLEASE PROTEIN K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D DNA polymerase III holoenzyme
E cg2338 dnaE1; PUTATIVE DNA POLYMERASE III, ALPHA CHAIN K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E cg1400 putative DNA polymerase III alpha subunit, the Gram-positive type K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
E cg0004 dnaN; DNA POLYMERASE III, BETA SUBUNIT K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
E cg2576 putative DNA polymerase III delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
E cg0376 dnaX; PUTATIVE DNA POLYMERASE III, DELTA' SUBUNIT K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
E cg2321 DNA polymerase III epsilon subunit or related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E cg1457 dnaQ2; DNA POLYMERASE III, EPSILON SUBUNIT, PUTATIVE K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E cg0302 DNA polymerase III epsilon subunit or related 3'-5' exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
E cg0296 dnaZX; DNA POLYMERASE III GAMMA AND TAU SUBUNITS K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D DNA ligase
E cg1401 ligA; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D Other MMR factors
E cg0976 pcrA; ATP-DEPENDENT HELICASE PCRA K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E cg0889 PUTATIVE DNA HELICASE RECQ K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E cg0886 PROBABLE DNA HELICASE II PROTEIN K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
E cg3307 ssb; SINGLE-STRANDED DNA-BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein
E cg2697 SINGLE-STRAND DNA BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein
B DSBR (double strand breaks repair)
C HR (homologous recombination)
D RecBC pathway proteins
E cg2141 recA; DNA RECOMBINATION/REPAIR K03553 recA; recombination protein RecA
E cg1870 ruvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
E cg1869 ruvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E cg1871 ruvC; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
E cg1805 priA; Primosomal protein N' (replication factor Y)-superfamily II helicase K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D RecFOR pathway proteins
E cg2141 recA; DNA RECOMBINATION/REPAIR K03553 recA; recombination protein RecA
E cg2950 radA; PROBABLE ATP-DEPENDENT PROTEASE, DNA REPAIR (ATP-B K04485 radA; DNA repair protein RadA/Sms
E cg0005 recF; DNA REPAIR AND GENETIC RECOMBINATION PROTEIN K03629 recF; DNA replication and repair protein RecF
E cg1498 RecG-like helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E cg0039 putative transcriptional regulator K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
E cg1956 recJ; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
E cg2509 recO; Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O)
E cg0298 recR; DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
E cg1602 recN; DNA REPAIR PROTEIN RECN K03631 recN; DNA repair protein RecN (Recombination protein N)
E cg1870 ruvA; Holliday junction resolvasome DNA-binding subunit K03550 ruvA; holliday junction DNA helicase RuvA
E cg1869 ruvB; Holliday junction resolvasome helicase subunit K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
E cg1871 ruvC; CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D AddAB pathway proteins
D Other HR factor
D Archaeal homologous recombinant proteins
C NHEJ (non-homologous end-joining)
D Two-component NHEJ DNA repair complex
D SHIIR (short-homology-independent illegitimate recombination)
E Facilitator
F cg0015 gyrA; DNA TOPOISOMERASE (ATP-HYDROLYSING) K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
F cg0007 gyrB; DNA GYRASE SUBUNIT B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
F cg0373 topA; DNA TOPOISOMERASE K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
E Supressor
D SHDIR (short-homology-dependent illegitimate recombination)
E RecET pathway
F cg1956 recJ; SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
F cg2509 recO; Recombinational DNA repair protein (RecF pathway) K03584 recO; DNA repair protein RecO (recombination protein O)
F cg0298 recR; DNA repair protein (RecF pathway) K06187 recR; recombination protein RecR
F cg1401 ligA; DNA LIGASE K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
E Facilitator
E Supressor
F cg1018 PROBABLE ATP-DEPENDENT DNA HELICASE PROTEIN K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
F cg1560 uvrA; Excinuclease ATPase subunit K03701 uvrA; excinuclease ABC subunit A
F cg1550 uvrB; EXCINUCLEASE ABC SUBUNIT B K03702 uvrB; excinuclease ABC subunit B
B TLS (translesion DNA synthesis) factors
C Y-family DNA polymerases
D cg2355 dinP; Nucleotidyltransferase/DNA polymerase involved in DNA repair, DinP homolog K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
C Other SOS response factors
D cg2141 recA; DNA RECOMBINATION/REPAIR K03553 recA; recombination protein RecA
D cg2114 lexA; PUTATIVE LEXA REPRESSOR TRANSCRIPTION REGULATOR PROTEIN K01356 lexA; repressor LexA [EC:3.4.21.88]
D cg1602 recN; DNA REPAIR PROTEIN RECN K03631 recN; DNA repair protein RecN (Recombination protein N)
D cg0714 polymerase involved in DNA repair K14161 imuB; protein ImuB
D cg0738 dnaE2; PUTATIVE DNA POLYMERASE III ALPHA CHAIN K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
D cg3307 ssb; SINGLE-STRANDED DNA-BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein
D cg2697 SINGLE-STRAND DNA BINDING PROTEIN K03111 ssb; single-strand DNA-binding protein
D cg2140 recX; regulatory protein involved in DNA repair, RecX family K03565 recX; regulatory protein
B Other factors with a suspected DNA repair function
C DNA polymerase
C DNA helicases
D cg2776 dinG; PROBABLE ATP-DEPENDENT DNA HELICASE-RELATED PROTEIN K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
D cg0968 PUTATIVE ATP-DEPENDENT HELICASE K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
C Modulation of nucleotide pools
D cg1303 NTP pyrophosphohydrolase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D cg1218 ADP-ribose pyrophosphatase K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D cg1241 hypothetical protein predicted by Glimmer/Critica K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D cg3043 NTP pyrophosphohydrolase/oxidative damage repair enzyme K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
D cg1490 NTP pyrophosphohydrolases including oxidative damage repair enzymes K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
D cg1607 NTP pyrophosphohydrolases including oxidative damage repair enzymes K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
D cg2086 dut; PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHY K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
D cg2786 nrdE; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE ALPHA CHAIN K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D cg2781 nrdF; RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 2 BETA CHAIN K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C Others
D cg2174 Exopolyphosphatase-related protein K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024