+D GENES KO
#
KEGG Orthology (KO) - Campylobacter geochelonis
%
!
A09100 Metabolism
B
B 09101 Carbohydrate metabolism
C 00010 Glycolysis / Gluconeogenesis [PATH:cgeo00010]
D CGEO_1434 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CGEO_1363 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CGEO_0763 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CGEO_1591 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CGEO_1593 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CGEO_1592 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CGEO_1638 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CGEO_1860 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CGEO_0558 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CGEO_1697 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CGEO_1029 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CGEO_1028 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CGEO_0900 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CGEO_0580 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
C 00020 Citrate cycle (TCA cycle) [PATH:cgeo00020]
D CGEO_1836 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CGEO_0846 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CGEO_1033 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CGEO_1029 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CGEO_1028 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CGEO_1027 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CGEO_1030 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CGEO_1031 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CGEO_1032 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CGEO_1123 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1122 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1124 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CGEO_1742 tartrate dehydratase/fumarate hydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CGEO_1743 tartrate dehydratase/fumarate hydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CGEO_1059 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CGEO_0556 mqo; malate:quinone-oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D CGEO_0896 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CGEO_0554 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CGEO_0580 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CGEO_1697 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
C 00030 Pentose phosphate pathway [PATH:cgeo00030]
D CGEO_1434 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CGEO_0674 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CGEO_1912 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CGEO_0288 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CGEO_1349 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CGEO_0900 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CGEO_0414 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CGEO_0763 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CGEO_1363 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
C 00040 Pentose and glucuronate interconversions [PATH:cgeo00040]
D CGEO_0773 uxaA; altronate hydrolase K16850 uxaA2; altronate dehydratase large subunit [EC:4.2.1.7]
D CGEO_1435 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CGEO_0674 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CGEO_0772 dihydrodipicolinate synthase family protein K22397 yjhH; 2-dehydro-3-deoxy-D-pentonate aldolase [EC:4.1.2.28]
D CGEO_1223 putative aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
C 00051 Fructose and mannose metabolism [PATH:cgeo00051]
D CGEO_0900 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CGEO_1223 putative aldolase K01628 fucA; L-fuculose-phosphate aldolase [EC:4.1.2.17]
D CGEO_0774 short-chain dehydrogenase/reductase K18333 E1.1.1.435; L-fucose dehydrogenase [EC:1.1.1.435]
D CGEO_1363 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CGEO_0763 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CGEO_1591 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CGEO_1349 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
C 00052 Galactose metabolism [PATH:cgeo00052]
D CGEO_1584 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CGEO_1435 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CGEO_0900 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
C 00053 Ascorbate and aldarate metabolism
C 00500 Starch and sucrose metabolism [PATH:cgeo00500]
D CGEO_1435 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CGEO_0900 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CGEO_1434 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00520 Amino sugar and nucleotide sugar metabolism [PATH:cgeo00520]
D CGEO_1103 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CGEO_0139 glmM; phosphoglucosamine mutase K03431 glmM; phosphoglucosamine mutase [EC:5.4.2.10]
D CGEO_0862 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CGEO_0985 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CGEO_1863 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CGEO_0899 polysaccharide biosynthesis protein, nucleotide sugar dehydrogenase, TviB family K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
D CGEO_1568 pglF; UDP-N-acetylglucosamine C-6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D CGEO_1569 pglE; UDP-4-amino-4,6-dideoxy-alpha-D-N-acetyl-D-glucosamine transaminase K15910 pglE; UDP-N-acetylbacillosamine transaminase [EC:2.6.1.34]
D CGEO_1571 pglD; UDP-4-amino-4,6-dideoxy-alpha-D-N-acetyl-D-glucosamine N-acetyltransferase K15913 pglD; UDP-N-acetylbacillosamine N-acetyltransferase [EC:2.3.1.203]
D CGEO_0900 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CGEO_1435 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CGEO_1584 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CGEO_1434 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
C 00620 Pyruvate metabolism [PATH:cgeo00620]
D CGEO_1697 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CGEO_1029 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CGEO_1028 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CGEO_1002 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CGEO_1001 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CGEO_0558 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CGEO_1632 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CGEO_1815 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CGEO_1814 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CGEO_0382 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CGEO_0970 FAD/FMN-containing dehydrogenase K18930 dld; D-lactate dehydrogenase
D CGEO_0753 metallo-beta-lactamase family protein K01069 gloB; hydroxyacylglutathione hydrolase [EC:3.1.2.6]
D CGEO_1810 mez; malate oxidoreductase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
D CGEO_0896 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CGEO_0554 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CGEO_0556 mqo; malate:quinone-oxidoreductase K00116 mqo; malate dehydrogenase (quinone) [EC:1.1.5.4]
D CGEO_1742 tartrate dehydratase/fumarate hydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CGEO_1743 tartrate dehydratase/fumarate hydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CGEO_1059 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CGEO_1123 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1122 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1124 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CGEO_0580 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CGEO_1560 leuA; 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00630 Glyoxylate and dicarboxylate metabolism [PATH:cgeo00630]
D CGEO_1836 gltA; citrate synthase K01647 CS; citrate synthase [EC:2.3.3.1]
D CGEO_0846 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CGEO_1320 glycolate oxidase, subunit GlcD-related protein K00104 glcD; glycolate dehydrogenase FAD-linked subunit [EC:1.1.99.14]
D CGEO_0486 anaerobic glycerol-3-phosphate dehydrogenase K11473 glcF; glycolate dehydrogenase iron-sulfur subunit [EC:1.1.99.14]
D CGEO_0718 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
D CGEO_1151 phosphoglycolate phosphatase-like HAD superfamily hydrolase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CGEO_1698 HAD superfamily hydrolase, probable phosphatase K01091 gph; phosphoglycolate phosphatase [EC:3.1.3.18]
D CGEO_0599 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CGEO_1608 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CGEO_1840 garK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CGEO_1759 fdhA; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CGEO_1794 fdhF; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CGEO_1758 fdhB; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CGEO_1793 fdhG; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CGEO_1757 fdhC; formate dehydrogenase N, cytochrome b-556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CGEO_0789 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
C 00640 Propanoate metabolism [PATH:cgeo00640]
D CGEO_1002 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CGEO_1001 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CGEO_1632 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CGEO_1815 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CGEO_1814 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CGEO_0382 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CGEO_1211 gabT; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D CGEO_1032 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CGEO_1031 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CGEO_0846 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CGEO_0770 iron-containing alcohol dehydrogenase K08325 yqhD; NADP-dependent alcohol dehydrogenase [EC:1.1.-.-]
C 00650 Butanoate metabolism [PATH:cgeo00650]
D CGEO_1123 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1122 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1124 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CGEO_1211 gabT; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D CGEO_1212 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CGEO_1697 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CGEO_1029 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CGEO_1028 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CGEO_0999 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CGEO_0998 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
C 00660 C5-Branched dibasic acid metabolism [PATH:cgeo00660]
D CGEO_0999 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CGEO_0998 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CGEO_1032 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CGEO_1031 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CGEO_1845 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CGEO_0784 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CGEO_0785 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
C 00562 Inositol phosphate metabolism [PATH:cgeo00562]
D CGEO_0204 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D CGEO_1591 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
B
B 09102 Energy metabolism
C 00190 Oxidative phosphorylation [PATH:cgeo00190]
D CGEO_0206 nuoA; NADH:quinone oxidoreductase I, membrane subunit A K00330 nuoA; NADH-quinone oxidoreductase subunit A [EC:7.1.1.2]
D CGEO_0207 nuoB; NADH:quinone oxidoreductase I, chain B K00331 nuoB; NADH-quinone oxidoreductase subunit B [EC:7.1.1.2]
D CGEO_0208 nuoC; NADH:quinone oxidoreductase I, chain C K00332 nuoC; NADH-quinone oxidoreductase subunit C [EC:7.1.1.2]
D CGEO_0209 nuoD; NADH:quinone oxidoreductase I, chain D K00333 nuoD; NADH-quinone oxidoreductase subunit D [EC:7.1.1.2]
D CGEO_0210 putative NADH:quinone oxidoreductase I chain E (cl24924 superfamily) K00334 nuoE; NADH-quinone oxidoreductase subunit E [EC:7.1.1.2]
D CGEO_0211 NADH:quinone oxidoreductase I, chain G-like protein (cl35703 superfamily) K00335 nuoF; NADH-quinone oxidoreductase subunit F [EC:7.1.1.2]
D CGEO_0212 nuoG; NADH:quinone oxidoreductase I, chain G (cl35703 superfamily) K00336 nuoG; NADH-quinone oxidoreductase subunit G [EC:7.1.1.2]
D CGEO_0213 nuoH; NADH:quinone oxidoreductase I, membrane subunit H K00337 nuoH; NADH-quinone oxidoreductase subunit H [EC:7.1.1.2]
D CGEO_0214 nuoI; NADH:quinone oxidoreductase I, chain I K00338 nuoI; NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
D CGEO_0215 nuoJ; NADH:quinone oxidoreductase I, membrane subunit J K00339 nuoJ; NADH-quinone oxidoreductase subunit J [EC:7.1.1.2]
D CGEO_0216 nuoK; NADH:quinone oxidoreductase I, membrane subunit K K00340 nuoK; NADH-quinone oxidoreductase subunit K [EC:7.1.1.2]
D CGEO_0217 nuoL; NADH:quinone oxidoreductase I, membrane subunit L K00341 nuoL; NADH-quinone oxidoreductase subunit L [EC:7.1.1.2]
D CGEO_0218 nuoM; NADH:quinone oxidoreductase I, membrane subunit M K00342 nuoM; NADH-quinone oxidoreductase subunit M [EC:7.1.1.2]
D CGEO_0219 nuoN; NADH:quinone oxidoreductase I, membrane subunit N K00343 nuoN; NADH-quinone oxidoreductase subunit N [EC:7.1.1.2]
D CGEO_0199 ndh; NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D CGEO_1417 NADH dehydrogenase K03885 ndh; NADH:quinone reductase (non-electrogenic) [EC:1.6.5.9]
D CGEO_1123 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1122 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1124 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CGEO_0460 petA; ubiquinol cytochrome c oxidoreductase PetABC, [2Fe-2S] subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CGEO_0459 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CGEO_0458 petC; ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CGEO_1710 ccoN; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CGEO_1709 ccoO; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CGEO_1708 ccoQ; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CGEO_1707 ccoP; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CGEO_0079 cioA; cyanide-insensitive cytochrome oxidase CioAB, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D CGEO_0080 cioB; cyanide-insensitive cytochrome oxidase CioAB, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
D CGEO_1631 cccA; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D CGEO_0364 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CGEO_0366 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CGEO_0365 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CGEO_0363 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CGEO_0367 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CGEO_0811 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CGEO_0361 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CGEO_0362 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CGEO_0585 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CGEO_1394 ppa; inorganic pyrophosphatase K01507 ppa; inorganic pyrophosphatase [EC:3.6.1.1]
D CGEO_1324 ppk; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CGEO_0737 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
C 00195 Photosynthesis
C 00196 Photosynthesis - antenna proteins
C 00710 Carbon fixation by Calvin cycle [PATH:cgeo00710]
D CGEO_1592 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CGEO_1593 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CGEO_0763 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CGEO_1363 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CGEO_1912 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
D CGEO_1349 rpiB; allose-6-phosphate isomerase / ribose-5-phosphate isomerase B K01808 rpiB; ribose 5-phosphate isomerase B [EC:5.3.1.6]
D CGEO_1591 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CGEO_0674 rpe; ribulose phosphate 3-epimerase K01783 rpe; ribulose-phosphate 3-epimerase [EC:5.1.3.1]
D CGEO_0288 tal; transaldolase K00616 TALDO1; transaldolase [EC:2.2.1.2]
D CGEO_0580 pckA; phosphoenolpyruvate carboxykinase (ATP) K01610 pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
D CGEO_1810 mez; malate oxidoreductase K00029 maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
C 00720 Other carbon fixation pathways [PATH:cgeo00720]
D CGEO_1697 por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric K03737 por; pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:1.2.7.1 1.2.7.-]
D CGEO_0896 pycA; pyruvate carboxylase, subunit A K01959 pycA; pyruvate carboxylase subunit A [EC:6.4.1.1]
D CGEO_0554 pycB; pyruvate carboxylase, subunit B K01960 pycB; pyruvate carboxylase subunit B [EC:6.4.1.1]
D CGEO_1742 tartrate dehydratase/fumarate hydratase, alpha subunit K01677 E4.2.1.2AA; fumarate hydratase subunit alpha [EC:4.2.1.2]
D CGEO_1743 tartrate dehydratase/fumarate hydratase, beta subunit K01678 E4.2.1.2AB; fumarate hydratase subunit beta [EC:4.2.1.2]
D CGEO_1059 fumC; fumarate hydratase, class II K01679 E4.2.1.2B; fumarate hydratase, class II [EC:4.2.1.2]
D CGEO_1123 frdA; fumarate reductase, flavoprotein subunit K00233 frdA; succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1122 frdB; fumarate reductase, iron-sulfur subunit K25995 frdB; succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1 7.1.1.12]
D CGEO_1124 frdC; fumarate reductase, cytochrome b subunit K25996 frdC; succinate dehydrogenase subunit C
D CGEO_1031 sucD; succinyl-CoA synthetase, alpha subunit K01902 sucD; succinyl-CoA synthetase alpha subunit [EC:6.2.1.5]
D CGEO_1032 sucC; succinyl-CoA synthetase, beta subunit K01903 sucC; succinyl-CoA synthetase beta subunit [EC:6.2.1.5]
D CGEO_1029 oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit K00174 korA; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3 1.2.7.11]
D CGEO_1028 oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit K00175 korB; 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase subunit beta [EC:1.2.7.3 1.2.7.11]
D CGEO_1027 oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit K00177 korC; 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC:1.2.7.3]
D CGEO_1030 oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit K00176 korD; 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC:1.2.7.3]
D CGEO_1033 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
D CGEO_0846 acnB; aconitate hydratase 2 K01682 acnB; aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99]
D CGEO_1632 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CGEO_1815 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CGEO_1814 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CGEO_0382 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CGEO_1346 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CGEO_1001 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CGEO_1002 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00680 Methane metabolism [PATH:cgeo00680]
D CGEO_1759 fdhA; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CGEO_1794 fdhF; formate dehydrogenase N, alpha subunit, selenocysteine-containing K00123 fdoG; formate dehydrogenase major subunit [EC:1.17.1.9]
D CGEO_1758 fdhB; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CGEO_1793 fdhG; formate dehydrogenase N, beta subunit, iron-sulfur cluster subunit K00124 fdoH; formate dehydrogenase iron-sulfur subunit
D CGEO_1757 fdhC; formate dehydrogenase N, cytochrome b-556 subunit K00127 fdoI; formate dehydrogenase subunit gamma
D CGEO_1649 fdhH; formate dehydrogenase H, selenocysteine-containing K22516 fdhA; formate dehydrogenase (coenzyme F420) alpha subunit [EC:1.17.98.3 1.8.98.6]
D CGEO_1608 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CGEO_1860 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CGEO_0763 fbaA; fructose-bisphosphate aldolase, class IIA K01624 FBA; fructose-bisphosphate aldolase, class II [EC:4.1.2.13]
D CGEO_1363 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CGEO_0339 molybdopterin-containing oxidoreductase II, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CGEO_1037 molybdopterin-containing oxidoreductase I, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CGEO_1309 molybdopterin-containing oxidoreductase I, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CGEO_1581 coenzyme F420 hydrogenase/dehydrogenase, beta subunit family protein K00441 frhB; coenzyme F420 hydrogenase subunit beta [EC:1.12.98.1]
D CGEO_1002 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
D CGEO_1001 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CGEO_1638 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CGEO_0595 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CGEO_0301 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CGEO_0287 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 00910 Nitrogen metabolism [PATH:cgeo00910]
D CGEO_1479 napA; periplasmic nitrate reductase NapAB, large subunit K02567 napA; nitrate reductase (cytochrome) [EC:1.9.6.1]
D CGEO_1476 napB; periplasmic nitrate reductase NapAB, small subunit, periplasmic diheme cytochrome c550 protein K02568 napB; nitrate reductase (cytochrome), electron transfer subunit
D CGEO_0413 nrfA; formate-dependent nitrite reductase NrfAH, periplasmic pentaheme cytochrome c subunit K03385 nrfA; nitrite reductase (cytochrome c-552) [EC:1.7.2.2]
D CGEO_0412 nrfH; formate-dependent nitrite reductase NrfAH, membrane-bound tetraheme cytochrome c subunit K15876 nrfH; cytochrome c nitrite reductase small subunit
D CGEO_1901 nosZ; nitrous oxide reductase K00376 nosZ; nitrous-oxide reductase [EC:1.7.2.4]
D CGEO_1040 putative hydroxylamine reductase K05601 hcp; hydroxylamine reductase [EC:1.7.99.1]
D CGEO_1057 multiheme c-type cytochrome K10535 hao; hydroxylamine dehydrogenase [EC:1.7.2.6]
D CGEO_1401 npd; nitronate monooxygenase K00459 ncd2; nitronate monooxygenase [EC:1.13.12.16]
D CGEO_0530 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CGEO_1805 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CGEO_0599 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CGEO_0024 canB; beta carbonic anhydrase, clade B K01673 cynT; carbonic anhydrase [EC:4.2.1.1]
C 00920 Sulfur metabolism [PATH:cgeo00920]
D CGEO_1462 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CGEO_1024 cysQ1; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CGEO_1837 cysQ2; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CGEO_0186 ttrD; tetrathionate reductase TtrDE, catalytic subunit D K08357 ttrA; tetrathionate reductase subunit A
D CGEO_0187 ttrE; tetrathionate reductase TtrDE, iron sulfur cluster-containing subunit E K08358 ttrB; tetrathionate reductase subunit B
D CGEO_1111 putative thiosulfate/polysulfide reductase, molybdenum-binding subunit K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D CGEO_0993 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CGEO_1157 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CGEO_0528 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D CGEO_1855 dmsB; anaerobic DMSO reductase DmsABC, chain B, iron-sulfur subunit K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
B
B 09103 Lipid metabolism
C 00061 Fatty acid biosynthesis [PATH:cgeo00061]
D CGEO_1632 accA; acetyl-CoA carboxylase, carboxyltransferase, alpha subunit K01962 accA; acetyl-CoA carboxylase carboxyl transferase subunit alpha [EC:6.4.1.2 2.1.3.15]
D CGEO_1815 accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein K02160 accB; acetyl-CoA carboxylase biotin carboxyl carrier protein
D CGEO_1814 accC; acetyl-CoA carboxylase, biotin carboxylase K01961 accC; acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
D CGEO_0382 accD; acetyl-CoA carboxylase, carboxyltransferase, beta subunit K01963 accD; acetyl-CoA carboxylase carboxyl transferase subunit beta [EC:6.4.1.2 2.1.3.15]
D CGEO_1528 acyl carrier protein K02078 acpP; acyl carrier protein
D CGEO_1529 acyl carrier protein K02078 acpP; acyl carrier protein
D CGEO_1634 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CGEO_0375 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CGEO_0304 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CGEO_1540 3-oxoacyl-[acp] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CGEO_1537 3-oxoacyl-[acp] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CGEO_1633 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CGEO_1538 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CGEO_1635 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CGEO_0253 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CGEO_1588 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00062 Fatty acid elongation
C 00071 Fatty acid degradation
D CGEO_1677 aas; 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
C 00073 Cutin, suberine and wax biosynthesis
C 00074 Mycolic acid biosynthesis [PATH:cgeo00074]
D CGEO_0454 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CGEO_1528 acyl carrier protein K02078 acpP; acyl carrier protein
D CGEO_1529 acyl carrier protein K02078 acpP; acyl carrier protein
D CGEO_1634 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
D CGEO_0375 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
C 00100 Steroid biosynthesis
C 00120 Primary bile acid biosynthesis
C 00121 Secondary bile acid biosynthesis [PATH:cgeo00121]
D CGEO_1020 short-chain dehydrogenase/reductase K00076 hdhA; 7-alpha-hydroxysteroid dehydrogenase [EC:1.1.1.159]
C 00140 Steroid hormone biosynthesis
C 00561 Glycerolipid metabolism [PATH:cgeo00561]
D CGEO_1840 garK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CGEO_0305 plsX; acyl phosphate synthase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CGEO_0313 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CGEO_1771 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CGEO_0048 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
C 00564 Glycerophospholipid metabolism [PATH:cgeo00564]
D CGEO_0814 gpsA; glycerol-3-phosphate dehydrogenase K00057 gpsA; glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94]
D CGEO_0313 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CGEO_1771 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
D CGEO_0048 dgkA; diacylglycerol kinase K00901 dgkA; diacylglycerol kinase (ATP) [EC:2.7.1.107]
D CGEO_1843 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
D CGEO_1677 aas; 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase K05939 aas; acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase / long-chain-fatty-acid--[acyl-carrier-protein] ligase [EC:2.3.1.40 6.2.1.20]
D CGEO_1847 cdsA; CDP-diglyceride synthetase K00981 E2.7.7.41; phosphatidate cytidylyltransferase [EC:2.7.7.41]
D CGEO_1561 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CGEO_1371 psd; phosphatidylserine decarboxylase, proenzyme K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CGEO_1562 phosphatidylserine decarboxylase family protein K01613 psd; phosphatidylserine decarboxylase [EC:4.1.1.65]
D CGEO_1021 pgsA; phosphatidylglycerophosphate synthase K00995 PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
D CGEO_1463 pgpA; phosphatidylglycerophosphatase A K01095 pgpA; phosphatidylglycerophosphatase A [EC:3.1.3.27]
C 00565 Ether lipid metabolism [PATH:cgeo00565]
D CGEO_1843 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00600 Sphingolipid metabolism
C 00590 Arachidonic acid metabolism
D CGEO_1843 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00591 Linoleic acid metabolism
D CGEO_1843 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 00592 alpha-Linolenic acid metabolism [PATH:cgeo00592]
D CGEO_1843 pldA; phospholipase A1 K01058 pldA; phospholipase A1/A2 [EC:3.1.1.32 3.1.1.4]
C 01040 Biosynthesis of unsaturated fatty acids
D CGEO_1684 acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
B
B 09104 Nucleotide metabolism
C 00230 Purine metabolism [PATH:cgeo00230]
D CGEO_0900 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CGEO_0414 prs; ribose-phosphate diphosphokinase K00948 PRPS; ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
D CGEO_0241 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CGEO_0571 purD; phosphoribosylamine-glycine ligase K01945 purD; phosphoribosylamine---glycine ligase [EC:6.3.4.13]
D CGEO_0182 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CGEO_1241 purL; phosphoribosylformylglycinamidine synthase PurLQS, PurL subunit K23269 purL; phosphoribosylformylglycinamidine synthase subunit PurL [EC:6.3.5.3]
D CGEO_0950 purS; phosphoribosylformylglycinamidine synthase PurLQS, PurS subunit K23264 purS; phosphoribosylformylglycinamidine synthase subunit PurS [EC:6.3.5.3]
D CGEO_0949 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CGEO_0129 purM; phosphoribosylformylglycinamide cyclo-ligase K01933 purM; phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]
D CGEO_0601 purE2; 5-aminoimidazole ribonucleotide (AIR) carboxylase K01588 purE; 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18]
D CGEO_0951 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase K01923 purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
D CGEO_0104 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CGEO_1237 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CGEO_1351 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CGEO_0281 umpG; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CGEO_0463 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CGEO_0527 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CGEO_0308 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CGEO_1773 putative dITP/XTP pyrophosphatase K01519 rdgB; XTP/dITP diphosphohydrolase [EC:3.6.1.66]
D CGEO_1100 putative nucleotide phosphoribosyltransferase K00769 gpt; xanthine phosphoribosyltransferase [EC:2.4.2.22]
D CGEO_0569 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CGEO_0473 gmk; deoxyguanylate kinase / guanylate kinase K00942 gmk; guanylate kinase [EC:2.7.4.8]
D CGEO_0103 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CGEO_0088 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CGEO_0085 nrdD2; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CGEO_1403 spoT; ppGpp synthetase / guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CGEO_0317 gppA; guanosine-5'-triphosphate, 3'-diphosphate pyrophosphatase K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CGEO_0596 exopolyphosphatase, Ppx/GppA family K01524 ppx-gppA; exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40]
D CGEO_1716 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CGEO_0668 metallophosphoesterase (YmdB domain) K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D CGEO_1393 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CGEO_1129 histidine triad nucleotide-binding protein, Fhit branch K19710 E2.7.7.53; ATP adenylyltransferase [EC:2.7.7.53]
D CGEO_1462 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
C 00240 Pyrimidine metabolism [PATH:cgeo00240]
D CGEO_0258 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CGEO_1714 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CGEO_0447 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CGEO_0448 pyrC2; dihydroorotase, multifunctional complex type K01465 URA4; dihydroorotase [EC:3.5.2.3]
D CGEO_1017 pyrD; dihydroorotate dehydrogenase 2 K00254 DHODH; dihydroorotate dehydrogenase [EC:1.3.5.2]
D CGEO_0019 pyrE; orotate phosphoribosyltransferase K00762 pyrE; orotate phosphoribosyltransferase [EC:2.4.2.10]
D CGEO_1545 pyrF; orotidine-5'-phosphate decarboxylase K01591 pyrF; orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
D CGEO_1405 pyrH; uridylate kinase K09903 pyrH; uridylate kinase [EC:2.7.4.22]
D CGEO_0308 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CGEO_0622 maf; septum formation protein Maf K06287 yhdE; nucleoside triphosphate pyrophosphatase [EC:3.6.1.-]
D CGEO_0073 pyrG; CTP synthetase K01937 pyrG; CTP synthase [EC:6.3.4.2]
D CGEO_0281 umpG; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CGEO_1808 upp; uracil phosphoribosyltransferase K00761 upp; uracil phosphoribosyltransferase [EC:2.4.2.9]
D CGEO_0668 metallophosphoesterase (YmdB domain) K09769 ymdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16]
D CGEO_0085 nrdD2; anaerobic ribonucleoside triphosphate reductase K21636 nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]
D CGEO_1829 dcd; dCTP deaminase K01494 dcd; dCTP deaminase [EC:3.5.4.13]
D CGEO_0103 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CGEO_0088 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
D CGEO_0990 tmk; dTMP kinase K00943 tmk; dTMP kinase [EC:2.7.4.9]
D CGEO_1969 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CGEO_0848 short-chain dehydrogenase/reductase, subgroup 5 K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
B
B 09105 Amino acid metabolism
C 00250 Alanine, aspartate and glutamate metabolism [PATH:cgeo00250]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_0819 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D CGEO_0516 L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CGEO_1723 ansB; asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CGEO_0200 nitrilase domain-containing protein K13566 NIT2; omega-amidase [EC:3.5.1.3]
D CGEO_1926 aspA; aspartate ammonia-lyase K01744 aspA; aspartate ammonia-lyase [EC:4.3.1.1]
D CGEO_0921 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CGEO_0578 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CGEO_1716 purA; adenylosuccinate synthetase K01939 purA; adenylosuccinate synthase [EC:6.3.4.4]
D CGEO_0104 purB; adenylosuccinate lyase K01756 purB; adenylosuccinate lyase [EC:4.3.2.2]
D CGEO_0447 pyrB; aspartate carbamoyltransferase, catalytic subunit K00609 pyrB; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
D CGEO_1211 gabT; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D CGEO_1212 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CGEO_1805 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CGEO_0599 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CGEO_0258 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CGEO_1714 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CGEO_0949 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CGEO_1103 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CGEO_0241 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
C 00260 Glycine, serine and threonine metabolism [PATH:cgeo00260]
D CGEO_0705 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CGEO_0431 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CGEO_0234 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CGEO_0393 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CGEO_0746 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CGEO_1608 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CGEO_1840 garK; glycerate kinase K00865 glxK; glycerate 2-kinase [EC:2.7.1.165]
D CGEO_1638 pgm; phosphoglycerate mutase K15633 gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.12]
D CGEO_0595 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CGEO_0301 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CGEO_0287 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
D CGEO_0848 short-chain dehydrogenase/reductase, subgroup 5 K16066 ydfG; 3-hydroxy acid dehydrogenase / malonic semialdehyde reductase [EC:1.1.1.381 1.1.1.-]
D CGEO_1561 pssA; phosphatidylserine synthase K17103 CHO1; CDP-diacylglycerol---serine O-phosphatidyltransferase [EC:2.7.8.8]
D CGEO_0851 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CGEO_1516 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D CGEO_0319 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CGEO_0320 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
C 00270 Cysteine and methionine metabolism [PATH:cgeo00270]
D CGEO_0993 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
D CGEO_1157 cysK; cysteine synthase K01738 cysK; cysteine synthase [EC:2.5.1.47]
D CGEO_0452 mmuM; homocysteine S-methyltransferase K00547 mmuM; homocysteine S-methyltransferase [EC:2.1.1.10]
D CGEO_0411 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CGEO_0654 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CGEO_0376 pfs; multifunctional 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D CGEO_0463 multi-copper polyphenol oxidoreductase laccase K05810 LACC1; purine-nucleoside/S-methyl-5'-thioadenosine phosphorylase / adenosine deaminase [EC:2.4.2.1 2.4.2.28 3.5.4.4]
D CGEO_1554 type II cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CGEO_1691 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CGEO_0705 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CGEO_0431 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CGEO_0234 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CGEO_0393 thrB; homoserine kinase K00872 thrB; homoserine kinase [EC:2.7.1.39]
D CGEO_0528 metX; homoserine O-acetyltransferase K00641 metX; homoserine O-acetyltransferase/O-succinyltransferase [EC:2.3.1.31 2.3.1.46]
D CGEO_1155 metY; O-acetylhomoserine sulfhydrylase K01740 metY; O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
D CGEO_0247 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_0595 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CGEO_0301 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00280 Valine, leucine and isoleucine degradation [PATH:cgeo00280]
D CGEO_0247 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
C 00290 Valine, leucine and isoleucine biosynthesis [PATH:cgeo00290]
D CGEO_0851 ilvA; threonine deaminase K01754 E4.3.1.19; threonine dehydratase [EC:4.3.1.19]
D CGEO_1845 leuC; isopropylmalate isomerase, large subunit K01703 leuC; 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
D CGEO_0784 leuD; isopropylmalate isomerase, small subunit K01704 leuD; 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
D CGEO_0785 leuB; 3-isopropylmalate dehydrogenase K00052 leuB; 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
D CGEO_0999 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CGEO_0998 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CGEO_0693 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CGEO_0045 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CGEO_0247 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CGEO_1560 leuA; 2-isopropylmalate synthase, bacterial type K01649 leuA; 2-isopropylmalate synthase [EC:2.3.3.13]
C 00300 Lysine biosynthesis [PATH:cgeo00300]
D CGEO_0234 hom; homoserine dehydrogenase K00003 hom; homoserine dehydrogenase [EC:1.1.1.3]
D CGEO_0705 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CGEO_0431 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CGEO_1019 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CGEO_0240 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
D CGEO_1458 dapD; tetrahydrodipicolinate succinylase K00674 dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [EC:2.3.1.117]
D CGEO_0805 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CGEO_0537 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CGEO_0127 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CGEO_0293 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CGEO_1916 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CGEO_1005 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
C 00310 Lysine degradation [PATH:cgeo00310]
D CGEO_1212 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
D CGEO_1218 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00220 Arginine biosynthesis [PATH:cgeo00220]
D CGEO_0483 argF; ornithine carbamoyltransferase K00611 OTC; ornithine carbamoyltransferase [EC:2.1.3.3]
D CGEO_0921 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CGEO_0578 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CGEO_0949 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CGEO_0599 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CGEO_0258 carB; carbamoylphosphate synthase, large subunit K01955 carB; carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
D CGEO_1714 carA; carbamoylphosphate synthase, small subunit K01956 carA; carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
D CGEO_1805 gdhA; glutamate dehydrogenase K00262 E1.4.1.4; glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_1381 acetyltransferase K00619 argA; amino-acid N-acetyltransferase [EC:2.3.1.1]
D CGEO_0677 argJ; bifunctional ornithine acetyltransferase / N-acetylglutamate synthase K00620 argJ; glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]
D CGEO_0748 argB; acetylglutamate kinase K00930 argB; acetylglutamate kinase [EC:2.7.2.8]
D CGEO_0285 argC; N-acetyl-gamma-glutamylphosphate reductase, common form K00145 argC; N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
D CGEO_0805 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
C 00330 Arginine and proline metabolism [PATH:cgeo00330]
D CGEO_0992 speA; arginine decarboxylase K01585 speA; arginine decarboxylase [EC:4.1.1.19]
D CGEO_1296 aguA; agmatine deiminase K10536 aguA; agmatine deiminase [EC:3.5.3.12]
D CGEO_1294 aguB; N-carbamoylputrescine amidohydrolase K12251 aguB; N-carbamoylputrescine amidase [EC:3.5.1.53]
D CGEO_1778 saccharopine dehydrogenase-like protein K27502 capadh; carboxyaminopropylagmatine dehydrogenase [EC:1.5.1.55]
D CGEO_1763 nspC; carboxynorspermidine decarboxylase K27684 capadc; carboxyaminopropylagmatine decarboxylase [EC:4.1.1.127]
D CGEO_0683 proC; pyrroline-5-carboxylate reductase K00286 proC; pyrroline-5-carboxylate reductase [EC:1.5.1.2]
D CGEO_0356 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CGEO_1135 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_1218 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00340 Histidine metabolism [PATH:cgeo00340]
D CGEO_1598 hisG(S); ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, catalytic subunit K00765 hisG; ATP phosphoribosyltransferase [EC:2.4.2.17]
D CGEO_0245 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase K11755 hisIE; phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase [EC:3.5.4.19 3.6.1.31]
D CGEO_1565 hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase K01814 hisA; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
D CGEO_1566 hisH; imidazole glycerol phosphate synthase HisFH, HisH subunit K02501 hisH; imidazole glycerol-phosphate synthase subunit HisH [EC:4.3.2.10]
D CGEO_0109 hisF; imidazole glycerol phosphate synthase HisFH, HisF subunit K02500 hisF; imidazole glycerol-phosphate synthase subunit HisF [EC:4.3.2.10]
D CGEO_1386 hisB; imidazoleglycerol-phosphate dehydratase K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
D CGEO_0295 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CGEO_0767 hisD; histidinal dehydrogenase / histidinol dehydrogenase K00013 hisD; histidinol dehydrogenase [EC:1.1.1.23]
D CGEO_0071 aromatic amino acid lyase K01745 hutH; histidine ammonia-lyase [EC:4.3.1.3]
C 00350 Tyrosine metabolism [PATH:cgeo00350]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_0295 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CGEO_1212 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00360 Phenylalanine metabolism [PATH:cgeo00360]
D CGEO_0836 paaK; phenylacetate--CoA ligase K01912 paaK; phenylacetate-CoA ligase [EC:6.2.1.30]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_0295 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CGEO_1218 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
C 00380 Tryptophan metabolism [PATH:cgeo00380]
D CGEO_0530 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CGEO_0718 katA; catalase K03781 katE; catalase [EC:1.11.1.6]
C 00400 Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:cgeo00400]
D CGEO_0817 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CGEO_0881 aroB; 3-dehydroquinate synthase K01735 aroB; 3-dehydroquinate synthase [EC:4.2.3.4]
D CGEO_0404 aroD; 3-dehydroquinate dehydratase K03786 aroQ; 3-dehydroquinate dehydratase II [EC:4.2.1.10]
D CGEO_1610 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
D CGEO_1551 aroK; shikimate kinase K00891 aroK; shikimate kinase [EC:2.7.1.71]
D CGEO_0592 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase K00800 aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
D CGEO_0031 aroC; chorismate synthase K01736 aroC; chorismate synthase [EC:4.2.3.5]
D CGEO_0325 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CGEO_0324 trpDG; anthranilate phosphoribosyltransferase / anthranilate synthase component II K13497 trpGD; anthranilate synthase/phosphoribosyltransferase [EC:4.1.3.27 2.4.2.18]
D CGEO_1130 trpC; indole-3-glycerol phosphate synthase K01609 trpC; indole-3-glycerol phosphate synthase [EC:4.1.1.48]
D CGEO_0323 trpF; phosphoribosylanthranilate isomerase K13498 trpCF; indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase [EC:4.1.1.48 5.3.1.24]
D CGEO_0319 trpA; tryptophan synthase, alpha subunit K01695 trpA; tryptophan synthase alpha chain [EC:4.2.1.20]
D CGEO_0320 trpB; tryptophan synthase, beta subunit K01696 trpB; tryptophan synthase beta chain [EC:4.2.1.20]
D CGEO_0294 pheA; chorismate mutase / prephenate dehydratase K14170 pheA; chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
D CGEO_0389 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_0295 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
B
B 09106 Metabolism of other amino acids
C 00410 beta-Alanine metabolism [PATH:cgeo00410]
D CGEO_1915 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
D CGEO_1211 gabT; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D CGEO_1615 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
C 00430 Taurine and hypotaurine metabolism [PATH:cgeo00430]
D CGEO_1001 pta; phosphate acetyltransferase K13788 pta; phosphate acetyltransferase [EC:2.3.1.8]
D CGEO_1002 ackA; acetate kinase K00925 ackA; acetate kinase [EC:2.7.2.1]
C 00440 Phosphonate and phosphinate metabolism
C 00450 Selenocompound metabolism [PATH:cgeo00450]
D CGEO_0411 metE; cobalamin-independent homocysteine transmethylase K00549 metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
D CGEO_0237 trxB; thioredoxin reductase K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CGEO_1134 NADPH oxidoreductase, putative flavodoxin quinone reductase FqrB K00384 trxB; thioredoxin reductase (NADPH) [EC:1.8.1.9]
D CGEO_1854 dmsA; anaerobic DMSO reductase DmsABC, chain A K07309 ynfE; Tat-targeted selenate reductase subunit YnfE [EC:1.97.1.9]
D CGEO_1462 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CGEO_1752 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CGEO_1801 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CGEO_1361 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
C 00460 Cyanoamino acid metabolism [PATH:cgeo00460]
D CGEO_0530 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CGEO_0516 L-asparaginase, type II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CGEO_1723 ansB; asparaginase II K01424 E3.5.1.1; L-asparaginase [EC:3.5.1.1]
D CGEO_1608 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
C 00470 D-Amino acid metabolism [PATH:cgeo00470]
D CGEO_1414 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CGEO_1218 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CGEO_1008 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CGEO_0949 purQ; phosphoribosylformylglycinamidine synthase PurLQS, glutaminase subunit PurQ K23265 purQ; phosphoribosylformylglycinamidine synthase subunit PurQ / glutaminase [EC:6.3.5.3 3.5.1.2]
D CGEO_1642 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CGEO_0819 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13]
D CGEO_1516 dsdA; D-serine ammonia-lyase K01753 dsdA; D-serine dehydratase [EC:4.3.1.18]
D CGEO_0127 dapF; diaminopimelate epimerase K01778 dapF; diaminopimelate epimerase [EC:5.1.1.7]
D CGEO_0293 lysA; diaminopimelate decarboxylase K01586 lysA; diaminopimelate decarboxylase [EC:4.1.1.20]
D CGEO_0432 hypothetical protein K01780 cntK; histidine racemase [EC:5.1.1.24]
C 00480 Glutathione metabolism [PATH:cgeo00480]
D CGEO_1353 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CGEO_0760 pepD; peptidase D K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CGEO_1033 icd; isocitrate dehydrogenase, monomeric K00031 IDH1; isocitrate dehydrogenase [EC:1.1.1.42]
B
B 09107 Glycan biosynthesis and metabolism
C 00510 N-Glycan biosynthesis
C 00513 Various types of N-glycan biosynthesis
C 00512 Mucin type O-glycan biosynthesis
C 00515 Mannose type O-glycan biosynthesis
C 00514 Other types of O-glycan biosynthesis
C 00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
C 00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
C 00533 Glycosaminoglycan biosynthesis - keratan sulfate
C 00531 Glycosaminoglycan degradation
C 00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
C 00601 Glycosphingolipid biosynthesis - lacto and neolacto series
C 00603 Glycosphingolipid biosynthesis - globo and isoglobo series
C 00604 Glycosphingolipid biosynthesis - ganglio series
C 00511 Other glycan degradation
C 00540 Lipopolysaccharide biosynthesis [PATH:cgeo00540]
D CGEO_0254 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CGEO_0391 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CGEO_0997 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CGEO_0286 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CGEO_0283 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CGEO_0750 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CGEO_0112 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CGEO_1548 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CGEO_1385 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CGEO_0745 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CGEO_0605 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CGEO_1253 waaM; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CGEO_1074 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CGEO_1249 O antigen ligase family membrane protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 00542 O-Antigen repeat unit biosynthesis
C 00541 O-Antigen nucleotide sugar biosynthesis [PATH:cgeo00541]
D CGEO_1435 galU; UTP--glucose-1-phosphate uridylyltransferase K00963 UGP2; UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
D CGEO_1584 gne; UDP-GlcNAc/Glc 4-epimerase K01784 galE; UDP-glucose 4-epimerase [EC:5.1.3.2]
D CGEO_0907 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CGEO_0910 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CGEO_0908 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CGEO_0909 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
D CGEO_0862 glmU; fused N-acetylglucosamine-1-phosphate uridyltransferase and glucosamine-1-phosphate acetyltransferase K04042 glmU; bifunctional UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157]
D CGEO_1568 pglF; UDP-N-acetylglucosamine C-6 dehydratase K15912 pglF; UDP-N-acetylglucosamine 4,6-dehydratase [EC:4.2.1.135]
D CGEO_0899 polysaccharide biosynthesis protein, nucleotide sugar dehydrogenase, TviB family K02474 wbpO; UDP-N-acetyl-D-glucosamine/UDP-N-acetyl-D-galactosamine dehydrogenase [EC:1.1.1.136 1.1.1.-]
C 00550 Peptidoglycan biosynthesis [PATH:cgeo00550]
D CGEO_0985 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CGEO_1863 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CGEO_0533 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CGEO_1642 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CGEO_1916 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CGEO_1008 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CGEO_1005 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CGEO_0860 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CGEO_1495 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CGEO_1641 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CGEO_0938 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CGEO_0621 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CGEO_1063 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CGEO_1379 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CGEO_0628 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 00552 Teichoic acid biosynthesis [PATH:cgeo00552]
D CGEO_1495 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
C 00571 Lipoarabinomannan (LAM) biosynthesis
C 00572 Arabinogalactan biosynthesis - Mycobacterium
C 00543 Exopolysaccharide biosynthesis [PATH:cgeo00543]
D CGEO_0993 cysE; serine O-acetyltransferase K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30]
B
B 09108 Metabolism of cofactors and vitamins
C 00730 Thiamine metabolism [PATH:cgeo00730]
D CGEO_1777 thiC; HMP-P synthase K03147 thiC; phosphomethylpyrimidine synthase [EC:4.1.99.17]
D CGEO_1302 hydroxymethylpyrimidine kinase / phosphohydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CGEO_1858 thiD; hydroxymethylpyrimidine kinase / phosphohydroxymethylpyrimidine kinase K00941 thiD; hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7]
D CGEO_1455 thiF; ThiS adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
D CGEO_0175 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CGEO_1453 thiH; 2-iminoacetate synthase K03150 thiH; 2-iminoacetate synthase [EC:4.1.99.19]
D CGEO_0296 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CGEO_1454 thiG; 1-deoxy-D-xylulose 5-phosphate:thiol sulfurtransferase K03149 thiG; thiazole synthase [EC:2.8.1.10]
D CGEO_1724 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CGEO_1452 thiamine phosphate synthase (TMP-TENI domain) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CGEO_1494 thiE; thiamine phosphate synthase (TMP-TENI domain) K00788 thiE; thiamine-phosphate pyrophosphorylase [EC:2.5.1.3]
D CGEO_0379 thiL; thiamine monophosphate kinase K00946 thiL; thiamine-monophosphate kinase [EC:2.7.4.16]
D CGEO_1393 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CGEO_0542 transcriptional regulator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
C 00740 Riboflavin metabolism [PATH:cgeo00740]
D CGEO_0481 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CGEO_1128 ribAB; bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase / GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CGEO_0400 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CGEO_1547 ribH; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, beta subunit) K00794 ribH; 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]
D CGEO_0462 ribE; 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase, alpha subunit) K00793 ribE; riboflavin synthase [EC:2.5.1.9]
D CGEO_0712 ribF; bifunctional riboflavin kinase / FMN adenylyltransferase K11753 ribF; riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2]
D CGEO_1724 thiM; hydroxyethylthiazole kinase K00878 thiM; hydroxyethylthiazole kinase [EC:2.7.1.50]
D CGEO_0988 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00750 Vitamin B6 metabolism [PATH:cgeo00750]
D CGEO_0301 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
D CGEO_0746 thrC; threonine synthase K01733 thrC; threonine synthase [EC:4.2.3.1]
D CGEO_1789 pdxS; pyridoxal 5'-phosphate synthase PdxST, synthase subunit PdxS K06215 pdxS; pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
C 00760 Nicotinate and nicotinamide metabolism [PATH:cgeo00760]
D CGEO_1809 pncBI; nicotinate phosphoribosyltransferase, subgroup A K00763 pncB; nicotinate phosphoribosyltransferase [EC:6.3.4.21]
D CGEO_0281 umpG; broad specificity 5'(3')-nucleotidase and polyphosphatase K03787 surE; 5'/3'-nucleotidase [EC:3.1.3.5 3.1.3.6]
D CGEO_1594 nadD_rsfS; fused nicotinate-mononucleotide adenylyltransferase / ribosomal silencing factor K00969 nadD; nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
D CGEO_0752 nadE; NAD synthetase, NH3-dependent K01916 nadE; NAD+ synthase [EC:6.3.1.5]
D CGEO_0524 pncC; NMN amidohydrolase K03743 pncC; nicotinamide-nucleotide amidase [EC:3.5.1.42]
D CGEO_0102 npdA; NAD-dependent protein deacetylase, SIR2 family K12410 cobB; NAD-dependent protein deacetylase/lipoamidase [EC:2.3.1.286 2.3.1.313]
D CGEO_1391 ppnK; inorganic polyphosphate/ATP-NAD kinase K00858 ppnK; NAD+ kinase [EC:2.7.1.23]
D CGEO_1212 gabD; succinate-semialdehyde dehydrogenase K00135 gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
C 00770 Pantothenate and CoA biosynthesis [PATH:cgeo00770]
D CGEO_0999 ilvI; acetolactate synthase III, valine-sensitive, catalytic (large) subunit K01652 E2.2.1.6L; acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
D CGEO_0998 ilvH; acetolactate synthase III, valine-sensitive, regulatory (small) subunit K01653 E2.2.1.6S; acetolactate synthase I/III small subunit [EC:2.2.1.6]
D CGEO_0693 ilvC; acetohydroxy acid isomeroreductase K00053 ilvC; ketol-acid reductoisomerase [EC:1.1.1.86]
D CGEO_0045 ilvD; dihydroxyacid dehydratase K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9]
D CGEO_1289 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase K00606 panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
D CGEO_1273 panE; 2-dehydropantoate 2-reductase K00077 panE; 2-dehydropantoate 2-reductase [EC:1.1.1.169]
D CGEO_1615 panC; pantothenate synthetase K01918 panC; pantoate--beta-alanine ligase [EC:6.3.2.1]
D CGEO_1599 coaX; pantothenate kinase, type III K03525 coaX; type III pantothenate kinase [EC:2.7.1.33]
D CGEO_0861 dfp; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase K13038 coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate---cysteine ligase [EC:4.1.1.36 6.3.2.5]
D CGEO_0989 coaD; phosphopantetheine adenylyltransferase K00954 E2.7.7.3A; pantetheine-phosphate adenylyltransferase [EC:2.7.7.3]
D CGEO_0128 coaE; dephospho-CoA kinase K00859 coaE; dephospho-CoA kinase [EC:2.7.1.24]
D CGEO_0454 acpS; holo-(acyl-carrier-protein) synthase K00997 acpS; holo-[acyl-carrier protein] synthase [EC:2.7.8.7]
D CGEO_1542 phosphopantetheinyl transferase family protein K06133 LYS5; 4'-phosphopantetheinyl transferase [EC:2.7.8.-]
D CGEO_0247 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CGEO_1915 panD; aspartate 1-decarboxylase K01579 panD; aspartate 1-decarboxylase [EC:4.1.1.11]
C 00780 Biotin metabolism [PATH:cgeo00780]
D CGEO_1303 bioC; malonyl-[acp] methyltransferase K02169 bioC; malonyl-CoA O-methyltransferase [EC:2.1.1.197]
D CGEO_1540 3-oxoacyl-[acp] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CGEO_1537 3-oxoacyl-[acp] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CGEO_1633 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CGEO_1538 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CGEO_1635 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CGEO_0253 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CGEO_1588 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CGEO_1304 DUF452 domain-containing protein K09789 bioG; pimeloyl-[acyl-carrier protein] methyl ester esterase [EC:3.1.1.85]
D CGEO_1305 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CGEO_0378 bioAD; bifunctional 7,8-diaminopelargonic acid synthase / dethiobiotin synthetase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CGEO_0106 bioB; biotin synthetase K01012 bioB; biotin synthase [EC:2.8.1.6]
D CGEO_0358 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
C 00785 Lipoic acid metabolism
C 00790 Folate biosynthesis [PATH:cgeo00790]
D CGEO_0176 folE; GTP cyclohydrolase I K01495 GCH1; GTP cyclohydrolase IA [EC:3.5.4.16]
D CGEO_0603 Nif3-like dinuclear metal center protein, putative GTP cyclohydrolase K22391 E3.5.4.16; GTP cyclohydrolase I [EC:3.5.4.16]
D CGEO_0314 folB; dihydroneopterin aldolase K01633 folB; 7,8-dihydroneopterin aldolase/epimerase/oxygenase [EC:4.1.2.25 5.1.99.8 1.13.11.81]
D CGEO_0406 folK; 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase K00950 folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
D CGEO_0708 folP; dihydropteroate synthase K00796 folP; dihydropteroate synthase [EC:2.5.1.15]
D CGEO_0664 folC; bifunctional folypolyglutamate synthetase / dihydrofolate synthetase K11754 folC; dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17]
D CGEO_0481 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CGEO_1128 ribAB; bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase / GTP cyclohydrolase II protein K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
D CGEO_1509 pabB; aminodeoxychorismate synthase, component I K01665 pabB; para-aminobenzoate synthetase component I [EC:2.6.1.85]
D CGEO_1510 branched-chain amino acid aminotransferase, possible 4-amino-4-deoxychorismate lyase PabC K02619 pabC; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38]
D CGEO_0225 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CGEO_0224 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CGEO_1376 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CGEO_0005 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CGEO_0223 moaA; GTP 3',8'-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CGEO_1887 moaC; cyclic pyranopterin monophosphate synthase K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CGEO_1765 moaE; molybdopterin synthase, catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CGEO_0885 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CGEO_0986 moeA1; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CGEO_1766 moeA2; molybdopterin molybdenumtransferase K03750 moeA; molybdopterin molybdotransferase [EC:2.10.1.1]
D CGEO_1844 mobA; molybdenum cofactor guanylyltransferase protein A K03752 mobA; molybdenum cofactor guanylyltransferase [EC:2.7.7.77]
C 00670 One carbon pool by folate [PATH:cgeo00670]
D CGEO_1346 folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase / 5,10-methylene-tetrahydrofolate cyclohydrolase K01491 folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
D CGEO_1608 glyA; serine hydroxymethyltransferase K00600 glyA; glycine hydroxymethyltransferase [EC:2.1.2.1]
D CGEO_0182 purN; phosphoribosylglycinamide formyltransferase 1 K11175 purN; phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2]
D CGEO_1237 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CGEO_0357 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CGEO_1969 thyX; thymidylate synthase, flavin-dependent K03465 thyX; thymidylate synthase (FAD) [EC:2.1.1.148]
D CGEO_0789 purU; formyltetrahydrofolate deformylase K01433 purU; formyltetrahydrofolate deformylase [EC:3.5.1.10]
D CGEO_1428 fau; 5-formyltetrahydrofolate cycloligase K01934 MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]
C 00830 Retinol metabolism
C 00860 Porphyrin metabolism [PATH:cgeo00860]
D CGEO_1367 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_1811 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_1148 hemA; glutamyl-tRNA reductase K02492 hemA; glutamyl-tRNA reductase [EC:1.2.1.70]
D CGEO_1344 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CGEO_0482 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CGEO_1145 hemC; hydroxymethylbilane synthase K01749 hemC; hydroxymethylbilane synthase [EC:2.5.1.61]
D CGEO_0570 hemD; uroporphyrinogen III synthase K01719 hemD; uroporphyrinogen-III synthase [EC:4.2.1.75]
D CGEO_0436 hemE; uroporphyrinogen decarboxylase K01599 hemE; uroporphyrinogen decarboxylase [EC:4.1.1.37]
D CGEO_0485 hemN2; oxygen-independent coproporphyrinogen III oxidase K02495 hemN; oxygen-independent coproporphyrinogen III oxidase [EC:1.3.98.3]
D CGEO_0329 UPF0093 domain-containing membrane protein K08973 hemJ; protoporphyrinogen IX oxidase [EC:1.3.99.-]
D CGEO_0626 hemH; ferrochelatase K01772 hemH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9]
D CGEO_1906 hypothetical protein K02303 cobA; uroporphyrin-III C-methyltransferase [EC:2.1.1.107]
D CGEO_1413 heme oxygenase, HugZ family K07226 hutZ; heme oxygenase (biliverdin-IX-beta and delta-forming) [EC:1.14.99.58]
C 00130 Ubiquinone and other terpenoid-quinone biosynthesis [PATH:cgeo00130]
D CGEO_0221 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
D CGEO_1143 menA; 1,4-dihydroxy-2-naphthoate octaprenyltransferase K03182 ubiD; 4-hydroxy-3-polyprenylbenzoate decarboxylase [EC:4.1.1.98]
D CGEO_0988 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CGEO_0299 ubiE; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / S-adenosylmethionine:2-DMK methyltransferase K03183 ubiE; demethylmenaquinone methyltransferase / 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase [EC:2.1.1.163 2.1.1.201]
D CGEO_1806 mqnA2; 6-amino-6-deoxyfutalosine synthase K11782 mqnA; chorismate dehydratase [EC:4.2.1.151]
D CGEO_1102 menaquinone biosynthesis protein, SCO4494 family K18285 mqnE; aminodeoxyfutalosine synthase [EC:2.5.1.120]
D CGEO_0403 metallo-dependent hydrolase, subgroup D K20810 mqnX; aminodeoxyfutalosine deaminase [EC:3.5.4.40]
D CGEO_0376 pfs; multifunctional 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase / 6-amino-6-deoxyfutalosine hydrolase K18284 K18284; adenosylhomocysteine/aminodeoxyfutalosine nucleosidase [EC:3.2.2.9 3.2.2.30]
D CGEO_1329 mqnC; dehypoxanthinylfutalosine cyclase K11784 mqnC; cyclic dehypoxanthinyl futalosine synthase [EC:1.21.98.1]
D CGEO_1862 mqnD; 1,4-dihydroxy-6-naphthoate synthase K11785 mqnD; 5,8-dihydroxy-2-naphthoate synthase [EC:4.1.99.29]
B
B 09109 Metabolism of terpenoids and polyketides
C 00900 Terpenoid backbone biosynthesis [PATH:cgeo00900]
D CGEO_0296 dxs; 1-deoxyxylulose-5-phosphate synthase K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
D CGEO_1848 dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]
D CGEO_1460 ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein K12506 ispDF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase / 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:2.7.7.60 4.6.1.12]
D CGEO_0641 ispE; 4-diphosphocytidyl-2-C-methylerythritol kinase K00919 ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
D CGEO_1301 ispG; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase K03526 gcpE; (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1 1.17.7.3]
D CGEO_0593 ispH; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase K03527 ispH; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase [EC:1.17.7.4]
D CGEO_0988 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
D CGEO_1913 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CGEO_1149 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CGEO_0860 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
C 00902 Monoterpenoid biosynthesis
C 00909 Sesquiterpenoid and triterpenoid biosynthesis
C 00904 Diterpenoid biosynthesis
C 00906 Carotenoid biosynthesis
C 00905 Brassinosteroid biosynthesis
C 00981 Insect hormone biosynthesis
C 00908 Zeatin biosynthesis
C 00903 Limonene degradation
C 00907 Pinene, camphor and geraniol degradation
C 01052 Type I polyketide structures
C 00522 Biosynthesis of 12-, 14- and 16-membered macrolides
C 01051 Biosynthesis of ansamycins
D CGEO_1912 tkt; transketolase K00615 E2.2.1.1; transketolase [EC:2.2.1.1]
C 01059 Biosynthesis of enediyne antibiotics
C 01056 Biosynthesis of type II polyketide backbone
C 01057 Biosynthesis of type II polyketide products
C 00253 Tetracycline biosynthesis
C 00523 Polyketide sugar unit biosynthesis [PATH:cgeo00523]
D CGEO_0907 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CGEO_0910 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CGEO_0908 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CGEO_0909 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 01054 Nonribosomal peptide structures [PATH:cgeo01054]
D CGEO_0819 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01053 Biosynthesis of siderophore group nonribosomal peptides
C 01055 Biosynthesis of vancomycin group antibiotics
D CGEO_0910 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
B
B 09110 Biosynthesis of other secondary metabolites
C 00940 Phenylpropanoid biosynthesis
C 00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis
C 00941 Flavonoid biosynthesis
C 00944 Flavone and flavonol biosynthesis
C 00942 Anthocyanin biosynthesis
C 00943 Isoflavonoid biosynthesis
C 00946 Degradation of flavonoids
C 00901 Indole alkaloid biosynthesis
C 00403 Indole diterpene alkaloid biosynthesis
C 00950 Isoquinoline alkaloid biosynthesis
C 00960 Tropane, piperidine and pyridine alkaloid biosynthesis
C 00996 Biosynthesis of various alkaloids
C 00232 Caffeine metabolism
C 00965 Betalain biosynthesis
C 00966 Glucosinolate biosynthesis
C 00402 Benzoxazinoid biosynthesis
C 00311 Penicillin and cephalosporin biosynthesis
C 00332 Carbapenem biosynthesis [PATH:cgeo00332]
D CGEO_0356 proB; gamma-glutamyl kinase K00931 proB; glutamate 5-kinase [EC:2.7.2.11]
D CGEO_1135 proA; glutamate-5-semialdehyde dehydrogenase K00147 proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]
C 00261 Monobactam biosynthesis [PATH:cgeo00261]
D CGEO_1462 sat; sulfate adenylyltransferase K00958 sat; sulfate adenylyltransferase [EC:2.7.7.4]
D CGEO_0705 lysC; aspartokinase, alpha and beta subunits K00928 lysC; aspartate kinase [EC:2.7.2.4]
D CGEO_0431 asd; aspartate-semialdehyde dehydrogenase K00133 asd; aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
D CGEO_1019 dapA; 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA; 4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]
D CGEO_0240 dapB; 4-hydroxy-tetrahydrodipicolinate reductase K00215 dapB; 4-hydroxy-tetrahydrodipicolinate reductase [EC:1.17.1.8]
C 00331 Clavulanic acid biosynthesis
C 00521 Streptomycin biosynthesis [PATH:cgeo00521]
D CGEO_0900 phosphomannomutase / phosphoglucomutase K15778 pmm-pgm; phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2]
D CGEO_0204 inositol monophosphatase family protein K01092 E3.1.3.25; myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
D CGEO_0907 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CGEO_0910 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
D CGEO_0908 dTDP-4-dehydrorhamnose 3,5-epimerase K01790 rfbC; dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
D CGEO_0909 dTDP-4-dehydrorhamnose reductase K00067 rfbD; dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]
C 00524 Neomycin, kanamycin and gentamicin biosynthesis
C 00525 Acarbose and validamycin biosynthesis [PATH:cgeo00525]
D CGEO_0907 glucose-1-phosphate thymidylyltransferase, short form K00973 rfbA; glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24]
D CGEO_0910 dTDP-glucose 4,6-dehydratase K01710 rfbB; dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
C 00401 Novobiocin biosynthesis [PATH:cgeo00401]
D CGEO_0389 tyrA; chorismate mutase / prephenate dehydrogenase K04517 tyrA2; prephenate dehydrogenase [EC:1.3.1.12]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_0295 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
C 00404 Staurosporine biosynthesis
C 00405 Phenazine biosynthesis
D CGEO_0325 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
C 00333 Prodigiosin biosynthesis
D CGEO_0375 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CGEO_1538 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CGEO_1635 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CGEO_1588 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
C 00254 Aflatoxin biosynthesis
C 00998 Biosynthesis of various antibiotics
D CGEO_1528 acyl carrier protein K02078 acpP; acyl carrier protein
D CGEO_1529 acyl carrier protein K02078 acpP; acyl carrier protein
D CGEO_1634 acpP; acyl carrier protein K02078 acpP; acyl carrier protein
C 00999 Biosynthesis of various plant secondary metabolites [PATH:cgeo00999]
D CGEO_0654 metK; S-adenosylmethionine synthetase K00789 metK; S-adenosylmethionine synthetase [EC:2.5.1.6]
D CGEO_1610 aroE; shikimate dehydrogenase K00014 aroE; shikimate dehydrogenase [EC:1.1.1.25]
C 00997 Biosynthesis of various other secondary metabolites
B
B 09111 Xenobiotics biodegradation and metabolism
C 00362 Benzoate degradation
D CGEO_0248 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CGEO_0426 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00627 Aminobenzoate degradation [PATH:cgeo00627]
D CGEO_0530 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
D CGEO_0988 ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase K03186 ubiX; flavin prenyltransferase [EC:2.5.1.129]
C 00364 Fluorobenzoate degradation
C 00625 Chloroalkane and chloroalkene degradation
C 00361 Chlorocyclohexane and chlorobenzene degradation
C 00623 Toluene degradation
C 00622 Xylene degradation
D CGEO_0248 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CGEO_0426 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00633 Nitrotoluene degradation
C 00642 Ethylbenzene degradation
C 00643 Styrene degradation
D CGEO_0530 carbon-nitrogen hydrolase family protein K01501 E3.5.5.1; nitrilase [EC:3.5.5.1]
C 00791 Atrazine degradation
C 00930 Caprolactam degradation
C 00363 Bisphenol degradation
C 00621 Dioxin degradation
D CGEO_0248 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
D CGEO_0426 4-oxalocrotonate tautomerase family enzyme K01821 praC; 4-oxalocrotonate tautomerase [EC:5.3.2.6]
C 00626 Naphthalene degradation
C 00624 Polycyclic aromatic hydrocarbon degradation
C 00365 Furfural degradation
C 00984 Steroid degradation
C 00980 Metabolism of xenobiotics by cytochrome P450
C 00982 Drug metabolism - cytochrome P450
C 00983 Drug metabolism - other enzymes
B
B 09112 Not included in regular maps
C 09113 Global maps only
#
A09120 Genetic Information Processing
B
B 09121 Transcription
C 03020 RNA polymerase [PATH:cgeo03020]
D CGEO_0501 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CGEO_0502 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CGEO_1920 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CGEO_1404 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
C 03022 Basal transcription factors
C 03040 Spliceosome
B
B 09122 Translation
C 03010 Ribosome [PATH:cgeo03010]
D CGEO_0594 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CGEO_0469 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CGEO_1942 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CGEO_1921 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CGEO_1931 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CGEO_0696 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CGEO_0506 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CGEO_1934 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CGEO_1700 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CGEO_1949 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CGEO_1922 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CGEO_0505 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CGEO_1923 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CGEO_1935 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CGEO_0714 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CGEO_0608 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CGEO_1939 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CGEO_0698 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CGEO_1944 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CGEO_0140 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CGEO_0167 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CGEO_0498 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CGEO_1945 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CGEO_1948 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CGEO_1947 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CGEO_1936 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CGEO_1933 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CGEO_0500 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CGEO_0922 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CGEO_0499 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CGEO_0497 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CGEO_1701 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CGEO_1938 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CGEO_1930 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CGEO_1941 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CGEO_1919 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CGEO_1932 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CGEO_0612 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CGEO_0126 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CGEO_0351 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CGEO_1943 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CGEO_1946 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CGEO_1937 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CGEO_0290 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CGEO_0352 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CGEO_0675 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CGEO_1940 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CGEO_0228 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CGEO_0306 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CGEO_0493 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CGEO_1259 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CGEO_0125 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CGEO_1924 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CGEO_1086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1423 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1741 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CGEO_1738 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CGEO_1420 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CGEO_1079 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CGEO_1419 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CGEO_1737 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
C 00970 Aminoacyl-tRNA biosynthesis [PATH:cgeo00970]
D CGEO_1084 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CGEO_1739 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CGEO_1421 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CGEO_1963 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CGEO_0195 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CGEO_0196 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CGEO_0509 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CGEO_0895 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CGEO_0449 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CGEO_1513 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CGEO_1960 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CGEO_0735 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CGEO_1041 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CGEO_0156 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CGEO_1152 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CGEO_1511 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CGEO_0987 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CGEO_1962 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CGEO_0490 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CGEO_0197 tRNA-His K14226 tRNA-His; tRNA His
D CGEO_1085 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CGEO_1422 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CGEO_1740 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CGEO_0194 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CGEO_0586 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CGEO_0891 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CGEO_1961 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CGEO_1153 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CGEO_1512 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CGEO_1486 tRNA-Met K14230 tRNA-Met; tRNA Met
D CGEO_0101 tRNA-Met K14230 tRNA-Met; tRNA Met
D CGEO_1042 tRNA-Met K14230 tRNA-Met; tRNA Met
D CGEO_1643 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CGEO_0028 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CGEO_0198 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CGEO_1958 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CGEO_1543 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CGEO_1911 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CGEO_0491 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CGEO_0488 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CGEO_0494 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CGEO_0489 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CGEO_0135 tRNA-Val K14237 tRNA-Val; tRNA Val
D CGEO_1514 tRNA-Val K14237 tRNA-Val; tRNA Val
D CGEO_1367 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_1811 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_0526 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CGEO_0813 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CGEO_1603 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CGEO_0624 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CGEO_1392 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CGEO_0602 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CGEO_0792 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CGEO_0123 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CGEO_1557 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CGEO_1801 selA; selenocysteine synthase K01042 selA; L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1]
D CGEO_1015 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CGEO_1361 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CGEO_0357 fmt; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase K00604 MTFMT; methionyl-tRNA formyltransferase [EC:2.1.2.9]
D CGEO_1065 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CGEO_0662 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CGEO_0525 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CGEO_1607 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CGEO_0475 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CGEO_1147 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CGEO_0991 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CGEO_1717 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CGEO_0590 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CGEO_0591 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CGEO_1402 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CGEO_1552 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C 03013 Nucleocytoplasmic transport
C 03015 mRNA surveillance pathway
C 03008 Ribosome biogenesis in eukaryotes
B
B 09123 Folding, sorting and degradation
C 03060 Protein export [PATH:cgeo03060]
D CGEO_1929 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CGEO_0495 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CGEO_0021 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CGEO_0659 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CGEO_0660 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CGEO_0658 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CGEO_1256 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CGEO_1210 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CGEO_0607 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CGEO_0007 srpB; bacterial signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D CGEO_1430 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CGEO_0474 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CGEO_0701 tatB; twin arginine translocation system, TatB protein K03117 tatB; sec-independent protein translocase protein TatB
D CGEO_0700 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
D CGEO_1347 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CGEO_0138 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
C 04141 Protein processing in endoplasmic reticulum
C 04130 SNARE interactions in vesicular transport
C 04120 Ubiquitin mediated proteolysis
C 04122 Sulfur relay system [PATH:cgeo04122]
D CGEO_0175 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CGEO_0036 tRNA U34 2-thiouridine synthase, MnmA family K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CGEO_0409 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CGEO_1765 moaE; molybdopterin synthase, catalytic subunit K03635 MOCS2B; molybdopterin synthase catalytic subunit [EC:2.8.1.12]
D CGEO_0223 moaA; GTP 3',8'-cyclase K03639 moaA; GTP 3',8-cyclase [EC:4.1.99.22]
D CGEO_1764 moaD; molybdopterin synthase, sulfur carrier subunit K03636 moaD; sulfur-carrier protein
D CGEO_0531 ThiF family protein K21029 moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]
D CGEO_1887 moaC; cyclic pyranopterin monophosphate synthase K03637 moaC; cyclic pyranopterin monophosphate synthase [EC:4.6.1.17]
D CGEO_0885 mogA; molybdopterin adenylyltransferase K03831 mogA; molybdopterin adenylyltransferase [EC:2.7.7.75]
D CGEO_1456 thiS; thiamine biosynthesis protein K03154 thiS; sulfur carrier protein
D CGEO_1455 thiF; ThiS adenylyltransferase K03148 thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]
C 03050 Proteasome
C 03018 RNA degradation [PATH:cgeo03018]
D CGEO_0704 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
D CGEO_1860 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CGEO_0575 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CGEO_0694 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CGEO_0450 DEAD-box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CGEO_1627 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CGEO_1427 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CGEO_0111 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CGEO_0738 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CGEO_1311 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CGEO_1324 ppk; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CGEO_0737 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
B
B 09124 Replication and repair
C 03030 DNA replication [PATH:cgeo03030]
D CGEO_0673 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CGEO_1499 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CGEO_1626 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CGEO_0707 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CGEO_0695 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CGEO_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CGEO_1300 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CGEO_0035 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CGEO_0697 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CGEO_0033 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CGEO_1952 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CGEO_0709 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03410 Base excision repair [PATH:cgeo03410]
D CGEO_0761 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CGEO_0121 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CGEO_1269 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CGEO_0201 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CGEO_0158 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CGEO_0072 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CGEO_0709 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03420 Nucleotide excision repair [PATH:cgeo03420]
D CGEO_0666 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CGEO_0328 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D CGEO_1467 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D CGEO_0567 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D CGEO_0639 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CGEO_1060 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CGEO_0709 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03430 Mismatch repair [PATH:cgeo03430]
D CGEO_0535 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D CGEO_1553 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D CGEO_0639 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CGEO_1060 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CGEO_0300 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CGEO_0529 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CGEO_0072 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CGEO_0697 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CGEO_1499 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CGEO_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CGEO_1626 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CGEO_0695 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CGEO_0707 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CGEO_0673 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CGEO_0709 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
C 03440 Homologous recombination [PATH:cgeo03440]
D CGEO_0072 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CGEO_0697 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CGEO_0560 recR; recombination protein K06187 recR; recombination protein RecR
D CGEO_1861 recA; recombinase K03553 recA; recombination protein RecA
D CGEO_1009 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CGEO_1117 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CGEO_1971 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CGEO_1327 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CGEO_1499 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CGEO_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CGEO_1626 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CGEO_0695 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CGEO_0707 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CGEO_0673 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CGEO_1374 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
C 03450 Non-homologous end-joining
C 03460 Fanconi anemia pathway
B
B 09126 Chromosome
C 03082 ATP-dependent chromatin remodeling
C 03083 Polycomb repressive complex
B
B 09125 Information processing in viruses
C 03230 Viral genome structure
C 03240 Viral replication
C 03250 Viral life cycle - HIV-1
C 03260 Virion - Human immunodeficiency virus
C 03271 Virion - Rotavirus
C 03262 Virion - Coronavirus
C 03261 Virion - Influenza virus
C 03263 Virion - Enterovirus
C 03264 Virion - Flavivirus
C 03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
C 03272 Virion - Hepatitis viruses
C 03266 Virion - Herpesvirus
C 03268 Virion - Orthopoxvirus
C 03267 Virion - Adenovirus
C 03259 Virion - Bacteriophages T4 and T7
C 03258 Virion - Bacteriophage lambda
#
A09130 Environmental Information Processing
B
B 09131 Membrane transport
C 02010 ABC transporters [PATH:cgeo02010]
D CGEO_1438 tupA; tungsten ABC transporter TupABC, periplasmic tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D CGEO_1437 tupB; tungsten ABC transporter TupABC, permease protein K05773 tupB; tungstate transport system permease protein
D CGEO_1436 tupC; tungsten ABC transporter TupABC, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CGEO_0871 modA; molybdenum ABC transporter ModABC, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CGEO_0869 modB; molybdenum ABC transporter ModABC, permease protein K02018 modB; molybdate transport system permease protein
D CGEO_0868 modC; molybdenum ABC transporter ModABC, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CGEO_0467 iron(III) ABC transporter, periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CGEO_0466 iron(III) ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D CGEO_0465 iron(III) ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CGEO_1966 glycine betaine/L-proline ABC transporter, permease/substrate-binding subunit, fused OpuBB/OpuBC K05845 opuC; osmoprotectant transport system substrate-binding protein
D CGEO_1965 glycine betaine/L-proline ABC transporter, ATP binding subunit OpuBA K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CGEO_1721 mlaC; lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D CGEO_1011 mlaD; lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CGEO_1013 mlaE; lipid asymmetry ABC transporter MlaABCDEF, permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CGEO_1012 mlaF; lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CGEO_1280 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CGEO_1284 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CGEO_1283 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D CGEO_1282 pstA; phosphate ABC transporter, permease protein (DUF3333 domain) K02038 pstA; phosphate transport system permease protein
D CGEO_1281 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CGEO_1491 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CGEO_1492 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CGEO_1489 amino acid ABC transporter, permease protein K17077 artQ; arginine/lysine/histidine transport system permease protein
D CGEO_1490 amino acid ABC transporter, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CGEO_1070 metQ1; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CGEO_1071 metQ2; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CGEO_1069 metI; DL-methionine ABC transporter MetINQ, permease protein K02072 metI; D-methionine transport system permease protein
D CGEO_1067 metN; DL-methionine ABC transporter MetINQ, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CGEO_0148 metal ion ABC transporter, periplasmic metal-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CGEO_0146 metal ion ABC transporter, membrane protein K09816 znuB; zinc transport system permease protein
D CGEO_0147 metal ion ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CGEO_0722 cbiM; cobalt/nickel ECF transporter CbiMNQO, S component CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CGEO_0724 cbiQ; cobalt/nickel ECF transporter CbiMNQO, T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CGEO_0725 cbiO; cobalt/nickel ECF transporter CbiMNQO, A component, ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D CGEO_1671 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein
D CGEO_1075 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein
D CGEO_0721 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein
D CGEO_0723 cbiN; cobalt/nickel ECF transporter CbiMNQO, S component CbiN K16915 cbiL; nickel transport protein
D CGEO_1076 putative membrane protein K16915 cbiL; nickel transport protein
D CGEO_0858 lptF; lipooligosaccharide transport system, ABC transporter permease component LptF K07091 lptF; lipopolysaccharide export system permease protein
D CGEO_0292 lptG; lipooligosaccharide transport system, ABC transporter permease component LptG K11720 lptG; lipopolysaccharide export system permease protein
D CGEO_0918 lptB; lipooligosaccharide transport system, ABC transporter ATP-binding component LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CGEO_1407 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CGEO_1408 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CGEO_1016 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CGEO_1170 type I secretion system ABC transporter, HlyB family K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D CGEO_1185 type I secretion system ABC transporter, HlyB family K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D CGEO_0877 macB; macrolide-specific efflux protein, ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CGEO_1828 ABC transporter, ATP-binding/permease components K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
C 02060 Phosphotransferase system (PTS)
C 03070 Bacterial secretion system [PATH:cgeo03070]
D CGEO_1168 type I secretion system membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D
D CGEO_1183 type I secretion system membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D
D CGEO_1170 type I secretion system ABC transporter, HlyB family K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D CGEO_1185 type I secretion system ABC transporter, HlyB family K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D CGEO_0929 ctsD; transformation system protein CtsD K02453 gspD; general secretion pathway protein D
D CGEO_0934 ctsF; transformation system, membrane protein CtsF K02455 gspF; general secretion pathway protein F
D CGEO_1372 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CGEO_1373 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CGEO_1464 hypothetical protein K02456 gspG; general secretion pathway protein G
D CGEO_1485 type II secretion/transformation system, G protein K02456 gspG; general secretion pathway protein G
D CGEO_0659 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CGEO_0660 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CGEO_0495 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CGEO_0021 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CGEO_1929 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CGEO_0658 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CGEO_1256 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CGEO_1210 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CGEO_1430 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CGEO_0607 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CGEO_0474 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CGEO_0701 tatB; twin arginine translocation system, TatB protein K03117 tatB; sec-independent protein translocase protein TatB
D CGEO_0700 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
D CGEO_1515 putative lytic transglycosylase K03194 virB1; type IV secretion system protein VirB1
B
B 09132 Signal transduction
C 02020 Two-component system [PATH:cgeo02020]
D CGEO_1285 two-component system response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CGEO_1280 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CGEO_1284 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CGEO_1161 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CGEO_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CGEO_1089 two-component system response regulator K11329 rpaB; two-component system, OmpR family, response regulator RpaB
D CGEO_1955 outer membrane porin, OprD family K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D CGEO_0975 two-component system response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CGEO_0039 two-component system sensor histidine kinase K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D CGEO_0098 anaerobic C4-dicarboxylate transporter, DcuA/DcuB family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CGEO_1091 molybdopterin-dependent oxidoreductase, cytochrome b subunit K08350 fdnI; formate dehydrogenase-N, gamma subunit
D CGEO_0599 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CGEO_0976 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D CGEO_1799 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D CGEO_0956 hydC; [Ni-Fe] hydrogenase, cytochrome b subunit K03620 hyaC; Ni/Fe-hydrogenase 1 B-type cytochrome subunit
D CGEO_0186 ttrD; tetrathionate reductase TtrDE, catalytic subunit D K08357 ttrA; tetrathionate reductase subunit A
D CGEO_0187 ttrE; tetrathionate reductase TtrDE, iron sulfur cluster-containing subunit E K08358 ttrB; tetrathionate reductase subunit B
D CGEO_0565 NIT sensor-containing two component system histidine kinase/response regulator fusion protein K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3]
D CGEO_0460 petA; ubiquinol cytochrome c oxidoreductase PetABC, [2Fe-2S] subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
D CGEO_0459 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CGEO_0458 petC; ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit K00413 CYC1; ubiquinol-cytochrome c reductase cytochrome c1 subunit
D CGEO_1631 cccA; periplasmic monoheme cytochrome c553 K08738 CYC; cytochrome c
D CGEO_1710 ccoN; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit I K00404 ccoN; cytochrome c oxidase cbb3-type subunit I [EC:7.1.1.9]
D CGEO_1709 ccoO; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit II K00405 ccoO; cytochrome c oxidase cbb3-type subunit II
D CGEO_1708 ccoQ; cytochrome c oxidase CcoNOPQ, cbb3-type, subunit IV K00407 ccoQ; cytochrome c oxidase cbb3-type subunit IV
D CGEO_1707 ccoP; cytochrome c oxidase CcoNOPQ, cbb3-type, membrane-bound monoheme cytochrome c subunit III K00406 ccoP; cytochrome c oxidase cbb3-type subunit III
D CGEO_0079 cioA; cyanide-insensitive cytochrome oxidase CioAB, subunit I K00425 cydA; cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7]
D CGEO_0080 cioB; cyanide-insensitive cytochrome oxidase CioAB, subunit II K00426 cydB; cytochrome bd ubiquinol oxidase subunit II [EC:7.1.1.7]
C 04010 MAPK signaling pathway
C 04013 MAPK signaling pathway - fly
C 04016 MAPK signaling pathway - plant
C 04011 MAPK signaling pathway - yeast
C 04012 ErbB signaling pathway
C 04014 Ras signaling pathway
C 04015 Rap1 signaling pathway
C 04310 Wnt signaling pathway
C 04330 Notch signaling pathway
C 04340 Hedgehog signaling pathway
C 04341 Hedgehog signaling pathway - fly
C 04350 TGF-beta signaling pathway
C 04390 Hippo signaling pathway
C 04391 Hippo signaling pathway - fly
C 04392 Hippo signaling pathway - multiple species
C 04370 VEGF signaling pathway
C 04371 Apelin signaling pathway
C 04630 JAK-STAT signaling pathway
C 04064 NF-kappa B signaling pathway
C 04668 TNF signaling pathway
C 04066 HIF-1 signaling pathway
C 04068 FoxO signaling pathway
C 04020 Calcium signaling pathway
C 04070 Phosphatidylinositol signaling system
C 04072 Phospholipase D signaling pathway
C 04071 Sphingolipid signaling pathway
C 04024 cAMP signaling pathway
C 04022 cGMP-PKG signaling pathway
C 04151 PI3K-Akt signaling pathway
C 04152 AMPK signaling pathway
C 04150 mTOR signaling pathway
C 04075 Plant hormone signal transduction
B
B 09133 Signaling molecules and interaction
C 04080 Neuroactive ligand-receptor interaction
C 04060 Cytokine-cytokine receptor interaction
C 04061 Viral protein interaction with cytokine and cytokine receptor
C 04512 ECM-receptor interaction
C 04514 Cell adhesion molecules
#
A09140 Cellular Processes
B
B 09141 Transport and catabolism
C 04144 Endocytosis
C 04145 Phagosome
C 04142 Lysosome
C 04146 Peroxisome
C 04140 Autophagy - animal
C 04138 Autophagy - yeast
C 04136 Autophagy - other
C 04137 Mitophagy - animal
C 04139 Mitophagy - yeast
C 04148 Efferocytosis
D CGEO_0460 petA; ubiquinol cytochrome c oxidoreductase PetABC, [2Fe-2S] subunit K00411 UQCRFS1; ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
B
B 09143 Cell growth and death
C 04110 Cell cycle
C 04111 Cell cycle - yeast
C 04112 Cell cycle - Caulobacter
C 04113 Meiosis - yeast
C 04114 Oocyte meiosis
C 04210 Apoptosis
C 04214 Apoptosis - fly
C 04215 Apoptosis - multiple species
C 04216 Ferroptosis
C 04217 Necroptosis
C 04115 p53 signaling pathway
C 04218 Cellular senescence
B
B 09144 Cellular community - eukaryotes
C 04510 Focal adhesion
C 04520 Adherens junction
C 04530 Tight junction
C 04540 Gap junction
C 04550 Signaling pathways regulating pluripotency of stem cells
B
B 09145 Cellular community - prokaryotes
C 02024 Quorum sensing [PATH:cgeo02024]
D CGEO_1691 luxS; S-ribosylhomocysteine lyase K07173 luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]
D CGEO_0325 trpE; anthranilate synthase component I K01657 trpE; anthranilate synthase component I [EC:4.1.3.27]
D CGEO_0817 aroG; 2-dehydro-3-deoxyphosphoheptonate aldolase (DAHP synthetase, class II) K01626 E2.5.1.54; 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
D CGEO_0149 transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D CGEO_0481 ribA; GTP cyclohydrolase II K01497 ribA; GTP cyclohydrolase II [EC:3.5.4.25]
D CGEO_0400 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase K11752 ribD; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
D CGEO_1276 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CGEO_0172 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CGEO_1256 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CGEO_0495 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CGEO_0021 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CGEO_1929 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CGEO_0658 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CGEO_1210 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CGEO_1430 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CGEO_0607 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
C 05111 Biofilm formation - Vibrio cholerae
C 02025 Biofilm formation - Pseudomonas aeruginosa
C 02026 Biofilm formation - Escherichia coli
B
B 09142 Cell motility
C 02030 Bacterial chemotaxis
D CGEO_0765 OmpA domain-containing protein K02557 motB; chemotaxis protein MotB
C 02040 Flagellar assembly [PATH:cgeo02040]
D CGEO_0765 OmpA domain-containing protein K02557 motB; chemotaxis protein MotB
D CGEO_0778 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
C 04814 Motor proteins
C 04820 Cytoskeleton in muscle cells
D CGEO_1860 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
C 04810 Regulation of actin cytoskeleton
#
A09150 Organismal Systems
B
B 09151 Immune system
C 04640 Hematopoietic cell lineage
C 04610 Complement and coagulation cascades
C 04611 Platelet activation
C 04613 Neutrophil extracellular trap formation
C 04620 Toll-like receptor signaling pathway
C 04624 Toll and Imd signaling pathway
C 04621 NOD-like receptor signaling pathway
C 04622 RIG-I-like receptor signaling pathway
C 04623 Cytosolic DNA-sensing pathway
C 04625 C-type lectin receptor signaling pathway
C 04650 Natural killer cell mediated cytotoxicity
C 04612 Antigen processing and presentation
C 04660 T cell receptor signaling pathway
C 04658 Th1 and Th2 cell differentiation
C 04659 Th17 cell differentiation
C 04657 IL-17 signaling pathway
C 04662 B cell receptor signaling pathway
C 04664 Fc epsilon RI signaling pathway
C 04666 Fc gamma R-mediated phagocytosis
C 04670 Leukocyte transendothelial migration
C 04672 Intestinal immune network for IgA production
C 04062 Chemokine signaling pathway
B
B 09152 Endocrine system
C 04911 Insulin secretion
C 04910 Insulin signaling pathway
C 04922 Glucagon signaling pathway
C 04923 Regulation of lipolysis in adipocytes
C 04920 Adipocytokine signaling pathway
C 03320 PPAR signaling pathway
C 04929 GnRH secretion
C 04912 GnRH signaling pathway
C 04913 Ovarian steroidogenesis
C 04915 Estrogen signaling pathway
C 04914 Progesterone-mediated oocyte maturation
C 04917 Prolactin signaling pathway
C 04921 Oxytocin signaling pathway
C 04926 Relaxin signaling pathway
C 04935 Growth hormone synthesis, secretion and action
C 04918 Thyroid hormone synthesis
C 04919 Thyroid hormone signaling pathway
C 04928 Parathyroid hormone synthesis, secretion and action
C 04916 Melanogenesis
C 04924 Renin secretion
C 04614 Renin-angiotensin system
C 04925 Aldosterone synthesis and secretion
C 04927 Cortisol synthesis and secretion
B
B 09153 Circulatory system
C 04260 Cardiac muscle contraction
C 04261 Adrenergic signaling in cardiomyocytes
C 04270 Vascular smooth muscle contraction
B
B 09154 Digestive system
C 04970 Salivary secretion
C 04971 Gastric acid secretion
C 04972 Pancreatic secretion
C 04976 Bile secretion
C 04973 Carbohydrate digestion and absorption
C 04974 Protein digestion and absorption
C 04975 Fat digestion and absorption
C 04979 Cholesterol metabolism
C 04977 Vitamin digestion and absorption
C 04980 Cobalamin transport and metabolism
C 04978 Mineral absorption
B
B 09155 Excretory system
C 04962 Vasopressin-regulated water reabsorption
C 04960 Aldosterone-regulated sodium reabsorption
C 04961 Endocrine and other factor-regulated calcium reabsorption
C 04964 Proximal tubule bicarbonate reclamation
C 04966 Collecting duct acid secretion
B
B 09156 Nervous system
C 04724 Glutamatergic synapse
C 04727 GABAergic synapse
C 04725 Cholinergic synapse
C 04728 Dopaminergic synapse
C 04726 Serotonergic synapse
C 04720 Long-term potentiation
C 04730 Long-term depression
C 04723 Retrograde endocannabinoid signaling
C 04721 Synaptic vesicle cycle
C 04722 Neurotrophin signaling pathway
B
B 09157 Sensory system
C 04744 Phototransduction
C 04745 Phototransduction - fly
C 04740 Olfactory transduction
C 04742 Taste transduction
C 04750 Inflammatory mediator regulation of TRP channels
B
B 09158 Development and regeneration
C 04320 Dorso-ventral axis formation
C 04360 Axon guidance
C 04361 Axon regeneration
C 04380 Osteoclast differentiation
B
B 09149 Aging
C 04211 Longevity regulating pathway
C 04212 Longevity regulating pathway - worm
C 04213 Longevity regulating pathway - multiple species
B
B 09159 Environmental adaptation
C 04710 Circadian rhythm
C 04713 Circadian entrainment
C 04711 Circadian rhythm - fly
C 04712 Circadian rhythm - plant
C 04714 Thermogenesis
C 04626 Plant-pathogen interaction
#
A09160 Human Diseases
B
B 09161 Cancer: overview
C 05200 Pathways in cancer
C 05202 Transcriptional misregulation in cancer
C 05206 MicroRNAs in cancer
C 05205 Proteoglycans in cancer
C 05204 Chemical carcinogenesis - DNA adducts
C 05207 Chemical carcinogenesis - receptor activation
C 05208 Chemical carcinogenesis - reactive oxygen species
C 05203 Viral carcinogenesis
C 05230 Central carbon metabolism in cancer
C 05231 Choline metabolism in cancer
C 05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
B
B 09162 Cancer: specific types
C 05210 Colorectal cancer
C 05212 Pancreatic cancer
C 05225 Hepatocellular carcinoma
C 05226 Gastric cancer
C 05214 Glioma
C 05216 Thyroid cancer
C 05221 Acute myeloid leukemia
C 05220 Chronic myeloid leukemia
C 05217 Basal cell carcinoma
C 05218 Melanoma
C 05211 Renal cell carcinoma
C 05219 Bladder cancer
C 05215 Prostate cancer
C 05213 Endometrial cancer
C 05224 Breast cancer
C 05222 Small cell lung cancer
C 05223 Non-small cell lung cancer
B
B 09172 Infectious disease: viral
C 05166 Human T-cell leukemia virus 1 infection
C 05170 Human immunodeficiency virus 1 infection
C 05161 Hepatitis B
C 05160 Hepatitis C
C 05171 Coronavirus disease - COVID-19
C 05164 Influenza A
C 05162 Measles
C 05168 Herpes simplex virus 1 infection
C 05163 Human cytomegalovirus infection
C 05167 Kaposi sarcoma-associated herpesvirus infection
C 05169 Epstein-Barr virus infection
C 05165 Human papillomavirus infection
B
B 09171 Infectious disease: bacterial
C 05110 Vibrio cholerae infection
C 05120 Epithelial cell signaling in Helicobacter pylori infection
C 05130 Pathogenic Escherichia coli infection
C 05132 Salmonella infection
C 05131 Shigellosis
C 05135 Yersinia infection
C 05133 Pertussis
C 05134 Legionellosis
C 05150 Staphylococcus aureus infection
C 05152 Tuberculosis
C 05100 Bacterial invasion of epithelial cells
B
B 09174 Infectious disease: parasitic
C 05146 Amoebiasis
C 05144 Malaria
C 05145 Toxoplasmosis
C 05140 Leishmaniasis
C 05142 Chagas disease
C 05143 African trypanosomiasis
B
B 09163 Immune disease
C 05310 Asthma
C 05322 Systemic lupus erythematosus
C 05323 Rheumatoid arthritis
C 05320 Autoimmune thyroid disease
C 05321 Inflammatory bowel disease
C 05330 Allograft rejection
C 05332 Graft-versus-host disease
C 05340 Primary immunodeficiency
B
B 09164 Neurodegenerative disease
C 05010 Alzheimer disease
C 05012 Parkinson disease
C 05014 Amyotrophic lateral sclerosis
C 05016 Huntington disease
C 05017 Spinocerebellar ataxia
C 05020 Prion disease
C 05022 Pathways of neurodegeneration - multiple diseases
B
B 09165 Substance dependence
C 05030 Cocaine addiction
C 05031 Amphetamine addiction
C 05032 Morphine addiction
C 05033 Nicotine addiction
C 05034 Alcoholism
B
B 09166 Cardiovascular disease
C 05417 Lipid and atherosclerosis
C 05418 Fluid shear stress and atherosclerosis
C 05410 Hypertrophic cardiomyopathy
C 05412 Arrhythmogenic right ventricular cardiomyopathy
C 05414 Dilated cardiomyopathy
C 05415 Diabetic cardiomyopathy
C 05416 Viral myocarditis
B
B 09167 Endocrine and metabolic disease
C 04930 Type II diabetes mellitus
C 04940 Type I diabetes mellitus
C 04950 Maturity onset diabetes of the young
C 04936 Alcoholic liver disease
C 04932 Non-alcoholic fatty liver disease
C 04931 Insulin resistance
C 04933 AGE-RAGE signaling pathway in diabetic complications
C 04934 Cushing syndrome
B
B 09175 Drug resistance: antimicrobial
C 01501 beta-Lactam resistance [PATH:cgeo01501]
D CGEO_1955 outer membrane porin, OprD family K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D CGEO_0170 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CGEO_0171 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CGEO_0172 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CGEO_0621 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CGEO_1379 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CGEO_0628 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
C 01502 Vancomycin resistance [PATH:cgeo01502]
D CGEO_0975 two-component system response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CGEO_1008 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CGEO_1414 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CGEO_1005 murF; D-alanyl-D-alanine-adding enzyme K01929 murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10]
D CGEO_1641 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CGEO_0938 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
C 01503 Cationic antimicrobial peptide (CAMP) resistance [PATH:cgeo01503]
D CGEO_1074 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CGEO_1400 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CGEO_1161 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CGEO_0170 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CGEO_0171 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CGEO_0254 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
B
B 09176 Drug resistance: antineoplastic
C 01521 EGFR tyrosine kinase inhibitor resistance
C 01524 Platinum drug resistance
C 01523 Antifolate resistance
C 01522 Endocrine resistance
#
A09180 Brite Hierarchies
B
B 09181 Protein families: metabolism
C 01000 Enzymes [BR:cgeo01000]
C 01001 Protein kinases [BR:cgeo01001]
D CGEO_0316 cosS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_0561 racS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_0803 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_1088 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_1107 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_1163 cprS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_0039 two-component system sensor histidine kinase K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D CGEO_0976 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D CGEO_1799 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D CGEO_1483 two-component system sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D CGEO_0565 NIT sensor-containing two component system histidine kinase/response regulator fusion protein K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3]
C 01009 Protein phosphatases and associated proteins [BR:cgeo01009]
D CGEO_0947 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CGEO_0287 serB; phosphoserine phosphatase K01079 serB; phosphoserine phosphatase [EC:3.1.3.3]
C 01002 Peptidases and inhibitors [BR:cgeo01002]
D CGEO_0138 lspA; prolipoprotein signal peptidase II K03101 lspA; signal peptidase II [EC:3.4.23.36]
D CGEO_0859 peptidase A24 N-terminal domain-containing protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CGEO_0957 twin arginine translocation system, TatA/E family protein K03605 hyaD; hydrogenase maturation protease [EC:3.4.23.-]
D CGEO_1872 hycI; hydrogenase maturation protease K08315 hycI; hydrogenase 3 maturation protease [EC:3.4.23.51]
D CGEO_0569 guaA; GMP synthase (glutamine-hydrolyzing) K01951 guaA; GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
D CGEO_0241 purF; amidophosphoribosyltransferase K00764 purF; amidophosphoribosyltransferase [EC:2.4.2.14]
D CGEO_1103 glmS; L-glutamine:D-fructose-6-phosphate aminotransferase K00820 glmS; glutamine---fructose-6-phosphate transaminase (isomerizing) [EC:2.6.1.16]
D CGEO_1505 DJ-1 family protein K03152 thiJ; protein deglycase [EC:3.5.1.124]
D CGEO_0729 CPBP family intramembrane metalloprotease K07052 K07052; CAAX protease family protein
D CGEO_0636 pepF; oligoendopeptidase F K08602 pepF; oligoendopeptidase F [EC:3.4.24.-]
D CGEO_0598 zinc-dependent peptidase, M16 family K07263 pqqL; zinc protease [EC:3.4.24.-]
D CGEO_1353 leucyl aminopeptidase, peptidase M17 family K01255 CARP; leucyl aminopeptidase [EC:3.4.11.1]
D CGEO_0537 dapE; N-succinyl-diaminopimelate deacylase K01439 dapE; succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
D CGEO_1776 pepT; peptidase T K01258 pepT; tripeptide aminopeptidase [EC:3.4.11.4]
D CGEO_0760 pepD; peptidase D K01270 pepD; dipeptidase D [EC:3.4.13.-]
D CGEO_0440 zinc-dependent amidase/aminoacylase/carboxypeptidase, peptidase M20 family K12940 abgA; aminobenzoyl-glutamate utilization protein A
D CGEO_1928 map; methionine aminopeptidase K01265 map; methionyl aminopeptidase [EC:3.4.11.18]
D CGEO_0405 pepQ; Xaa-Pro dipeptidase, M24 metallopeptidase family K01262 pepP; Xaa-Pro aminopeptidase [EC:3.4.11.9]
D CGEO_0504 isoaspartyl dipeptidase K01305 iadA; beta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]
D CGEO_0884 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CGEO_1563 ftsH2; integral membrane ATP-dependent zinc metallopeptidase (extracellular domain) K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CGEO_1022 RseP-like zinc metalloprotease, M50 family K11749 rseP; regulator of sigma E protease [EC:3.4.24.-]
D CGEO_1161 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CGEO_0178 clpP; serine protease ClpP K01358 clpP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]
D CGEO_0681 lon; DNA-binding, ATP-dependent protease La K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53]
D CGEO_1347 lepB; leader peptidase (signal peptidase I) K03100 lepB; signal peptidase I [EC:3.4.21.89]
D CGEO_0952 ctpA; carboxyl-terminal protease family protein K03797 E3.4.21.102; carboxyl-terminal processing protease [EC:3.4.21.102]
D CGEO_0402 sppA; signal peptide peptidase protease IV K04773 sppA; protease IV [EC:3.4.21.-]
D CGEO_1791 pepE; (alpha)-aspartyl dipeptidase (peptidase E) K05995 pepE; dipeptidase E [EC:3.4.13.21]
D CGEO_0923 hslV; heat shock protein HslVU, ATP-dependent protease subunit K01419 hslV; ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
D CGEO_0600 collagenase-like peptidase, U32 family K08303 prtC; U32 family peptidase [EC:3.4.-.-]
D CGEO_1583 putative serine protease inhibitor, Ecotin family K08276 eco; ecotin
D CGEO_1064 alpha-2-macroglobulin domain-containing protein K06894 yfhM; alpha-2-macroglobulin
C 01003 Glycosyltransferases [BR:cgeo01003]
D CGEO_1063 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CGEO_0621 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CGEO_1573 pglA; N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase K15914 pglA; N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase [EC:2.4.1.290]
D CGEO_1576 pglH1; GalNAc-alpha-(1,4)-GalNAc-alpha-(1, 3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase K17249 pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]
D CGEO_1578 pglH2; GalNAc-alpha-(1,4)-GalNAc-alpha-(1, 3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase K17249 pglH; GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase [EC:2.4.1.292]
D CGEO_1579 pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase K17250 pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase [EC:2.4.1.293]
D CGEO_1575 pglJ; N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase K17248 pglJ; N-acetylgalactosamine-N,N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase [EC:2.4.1.291]
C 01005 Lipopolysaccharide biosynthesis proteins [BR:cgeo01005]
D CGEO_0254 lpxA; UDP-N-acetylglucosamine acyltransferase K00677 lpxA; UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129]
D CGEO_0283 lpxB; lipid A disaccharide synthase K00748 lpxB; lipid-A-disaccharide synthase [EC:2.4.1.182]
D CGEO_0391 lpxC; UDP-3-O-acyl-N-acetylglucosamine deacetylase K02535 lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108]
D CGEO_0997 lpxD; UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase K02536 lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]
D CGEO_0286 lpxH; UDP-2,3-diacylglucosamine hydrolase K03269 lpxH; UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54]
D CGEO_0750 lpxK; tetraacyldisaccharide 4'-kinase K00912 lpxK; tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
D CGEO_1253 waaM; lipid A biosynthesis lauroyl acyltransferase K02517 lpxL; Kdo2-lipid IVA lauroyltransferase/acyltransferase [EC:2.3.1.241 2.3.1.-]
D CGEO_0605 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) K02527 kdtA; 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15]
D CGEO_1074 eptC; phosphoethanolamine transferase K03760 eptA; lipid A ethanolaminephosphotransferase [EC:2.7.8.43]
D CGEO_1548 kdsA; 3-deoxy-D-manno-octulosonate 8-phosphate synthase K01627 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
D CGEO_0745 kdsB; 3-deoxy-D-manno-octulosonate cytidylyltransferase K00979 kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38]
D CGEO_1385 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family K03270 kdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]
D CGEO_0112 kpsF; D-arabinose 5-phosphate isomerase K06041 kdsD; arabinose-5-phosphate isomerase [EC:5.3.1.13]
D CGEO_1249 O antigen ligase family membrane protein K02847 waaL; O-antigen ligase [EC:2.4.99.26]
C 01011 Peptidoglycan biosynthesis and degradation proteins [BR:cgeo01011]
D CGEO_0985 murA; UDP-N-acetylglucosamine enolpyruvoyl transferase K00790 murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7]
D CGEO_1863 murB; UDP-N-acetylenolpyruvoylglucosamine reductase K00075 murB; UDP-N-acetylmuramate dehydrogenase [EC:1.3.1.98]
D CGEO_0533 murC; UDP-N-acetylmuramate-alanine ligase K01924 murC; UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
D CGEO_1642 murD; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase K01925 murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
D CGEO_1916 murE; UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase K01928 murE; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]
D CGEO_1008 ddlA; D-alanine--D-alanine ligase K01921 ddl; D-alanine-D-alanine ligase [EC:6.3.2.4]
D CGEO_1414 alr; alanine racemase K01775 alr; alanine racemase [EC:5.1.1.1]
D CGEO_1641 mraY; phospho-N-acetylmuramoyl-pentapeptide transferase K01000 mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase [EC:2.7.8.13]
D CGEO_0938 murG; N-acetylglucosaminyl transferase K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227]
D CGEO_1495 bacA; undecaprenyl pyrophosphate phosphatase K06153 bacA; undecaprenyl-diphosphatase [EC:3.6.1.27]
D CGEO_1014 murJ; lipid II flippase K03980 murJ; putative peptidoglycan lipid II flippase
D CGEO_0621 pbpA; penicillin-binding protein 1A K05366 mrcA; penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
D CGEO_1063 pbpB; penicillin-binding protein 1C K05367 pbpC; penicillin-binding protein 1C [EC:2.4.99.28]
D CGEO_1379 mrdA; penicillin-binding protein 2 K05515 mrdA; penicillin-binding protein 2 [EC:3.4.16.4]
D CGEO_0628 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CGEO_1365 slt; soluble lytic murein transglycosylase K08309 slt; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CGEO_1388 mltD; membrane-bound lytic murein transglycosylase D K08307 mltD; peptidoglycan lytic transglycosylase D [EC:4.2.2.29]
D CGEO_1034 YceG-like protein K07082 mltG; peptidoglycan lytic transglycosylase G [EC:4.2.2.29]
D CGEO_1387 rlpA; septal ring lytic transglycosylase K03642 rlpA; peptidoglycan lytic transglycosylase [EC:4.2.2.29]
D CGEO_1400 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
C 01004 Lipid biosynthesis proteins [BR:cgeo01004]
D CGEO_0375 fabD; malonyl-CoA-[acp] transacylase K00645 fabD; [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]
D CGEO_0304 fabH; beta-ketoacyl-[acp] synthase III (KASIII) K00648 fabH; 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
D CGEO_1540 3-oxoacyl-[acp] synthase I K00647 fabB; 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41]
D CGEO_1537 3-oxoacyl-[acp] synthase II K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CGEO_1633 fabF; beta-ketoacyl-[acp] synthase II (KASII) K09458 fabF; 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
D CGEO_1538 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CGEO_1635 fabG; 3-oxoacyl-[acp] reductase K00059 fabG; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
D CGEO_0253 fabZ; 3-hydroxyacyl-[acp] dehydratase K02372 fabZ; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.59]
D CGEO_1588 fabI; enoyl-[acp] reductase K00208 fabI; enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9 1.3.1.10]
D CGEO_1684 acyl-CoA thioesterase K10806 yciA; acyl-CoA thioesterase YciA [EC:3.1.2.-]
D CGEO_0305 plsX; acyl phosphate synthase K03621 plsX; phosphate acyltransferase [EC:2.3.1.274]
D CGEO_0313 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase K08591 plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]
D CGEO_1771 plsC; 1-acylglycerol-3-phosphate O-acyltransferase K00655 plsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
C 01008 Polyketide biosynthesis proteins [BR:cgeo01008]
D CGEO_0819 aspartate/glutamate racemase family protein K01779 racD; aspartate racemase [EC:5.1.1.13]
C 01006 Prenyltransferases [BR:cgeo01006]
D CGEO_1913 ispA; geranyl diphosphate synthase / farnesyl diphosphate synthase K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29]
D CGEO_1149 ispB; octaprenyl-diphosphate synthase K02523 ispB; octaprenyl-diphosphate synthase [EC:2.5.1.90]
D CGEO_0860 ispU; undecaprenyl diphosphate synthetase K00806 uppS; undecaprenyl diphosphate synthase [EC:2.5.1.31]
D CGEO_0220 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CGEO_0221 ubiA; 4-hydroxybenzoate octaprenyltransferase K03179 ubiA; 4-hydroxybenzoate polyprenyltransferase [EC:2.5.1.39]
C 01007 Amino acid related enzymes [BR:cgeo01007]
D CGEO_1367 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_1811 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_1402 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CGEO_1552 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CGEO_1015 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CGEO_0475 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CGEO_1361 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CGEO_0525 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CGEO_1065 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CGEO_0662 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CGEO_1607 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CGEO_1392 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CGEO_0991 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CGEO_1717 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CGEO_0602 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CGEO_0792 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CGEO_1557 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CGEO_1147 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CGEO_0123 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CGEO_0624 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CGEO_0590 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CGEO_0591 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CGEO_0994 aspB; aspartate aminotransferase, class I and II aminotransferase K00812 aspB; aspartate aminotransferase [EC:2.6.1.1]
D CGEO_0233 aspartate aminotransferase, class I and II aminotransferase K14261 alaC; alanine-synthesizing transaminase [EC:2.6.1.-]
D CGEO_0295 hisC; histidinol-phosphate aminotransferase K00817 hisC; histidinol-phosphate aminotransferase [EC:2.6.1.9]
D CGEO_1305 bioF; 8-amino-7-oxononanoate synthase K00652 bioF; 8-amino-7-oxononanoate synthase [EC:2.3.1.47]
D CGEO_0805 argD; N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase K00821 argD; acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
D CGEO_1211 gabT; 4-aminobutyrate aminotransferase K00823 puuE; 4-aminobutyrate aminotransferase [EC:2.6.1.19]
D CGEO_0378 bioAD; bifunctional 7,8-diaminopelargonic acid synthase / dethiobiotin synthetase K00833 bioA; adenosylmethionine---8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62]
D CGEO_1344 hemL; glutamate-1-semialdehyde aminotransferase K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
D CGEO_1218 D-amino acid aminotransferase K00824 dat; D-alanine transaminase [EC:2.6.1.21]
D CGEO_0247 ilvE; branched-chain amino-acid aminotransferase K00826 E2.6.1.42; branched-chain amino acid aminotransferase [EC:2.6.1.42]
D CGEO_0301 serC; phosphohydroxythreonine aminotransferase / 3-phosphoserine aminotransferase K00831 serC; phosphoserine aminotransferase [EC:2.6.1.52]
C 00199 Cytochrome P450
C 00194 Photosynthesis proteins [BR:cgeo00194]
D CGEO_0367 atpC; ATP synthase, F1 complex, epsilon subunit K02114 ATPF1E; F-type H+-transporting ATPase subunit epsilon
D CGEO_0366 atpD; ATP synthase, F1 complex, beta subunit K02112 ATPF1B; F-type H+/Na+-transporting ATPase subunit beta [EC:7.1.2.2 7.2.2.1]
D CGEO_0365 atpG; ATP synthase, F1 complex, gamma subunit K02115 ATPF1G; F-type H+-transporting ATPase subunit gamma
D CGEO_0364 atpA; ATP synthase, F1 complex, alpha subunit K02111 ATPF1A; F-type H+/Na+-transporting ATPase subunit alpha [EC:7.1.2.2 7.2.2.1]
D CGEO_0363 atpH; ATP synthase, F1 complex, delta subunit K02113 ATPF1D; F-type H+-transporting ATPase subunit delta
D CGEO_0361 atpF'; ATP synthase, F0 complex, b' subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CGEO_0362 atpF; ATP synthase, F0 complex, b subunit K02109 ATPF0B; F-type H+-transporting ATPase subunit b
D CGEO_0585 atpE; ATP synthase, F0 complex, c subunit K02110 ATPF0C; F-type H+-transporting ATPase subunit c
D CGEO_0811 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
B
B 09182 Protein families: genetic information processing
C 03000 Transcription factors [BR:cgeo03000]
D CGEO_1554 type II cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CGEO_0275 transcriptional regulator, AraC family K20968 exsA; AraC family transcriptional regulator, exoenzyme S synthesis regulatory protein ExsA
D CGEO_1788 PLP-dependent aminotransferase K00375 K00375; GntR family transcriptional regulator / MocR family aminotransferase
D CGEO_0169 transcriptional regulator, TetR/AcrR family K18992 cmeR; TetR/AcrR family transcriptional regulator, cmeABC operon repressor
D CGEO_1159 hspR; heat shock transcriptional regulator, MerR family K13640 hspR; MerR family transcriptional regulator, heat shock protein HspR
D CGEO_1606 fur; ferric uptake regulation protein K03711 fur; Fur family transcriptional regulator, ferric uptake regulator
D CGEO_0149 transcriptional regulator, Fur family K09823 zur; Fur family transcriptional regulator, zinc uptake regulator
D CGEO_0297 perR; peroxide stress transcriptional regulator PerR K09825 perR; Fur family transcriptional regulator, peroxide stress response regulator
D CGEO_1036 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CGEO_1685 transcriptional regulator, Crp/Fnr family K01420 fnr; CRP/FNR family transcriptional regulator, anaerobic regulatory protein
D CGEO_1650 transcriptional regulator, Crp/Fnr family K21555 cooA; CRP/FNR family transcriptional regulator, carbon monoxide oxidation system transcription regulator
D CGEO_0715 transcriptional regulator, IscR/Rrf2 family K13643 iscR; Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
D CGEO_1156 transcriptional regulator, IscR/Rrf2 family K17472 cymR; Rrf2 family transcriptional regulator, cysteine metabolism repressor
D CGEO_0358 birA; biotin-[acetyl-CoA-carboxylase] ligase K03524 birA; BirA family transcriptional regulator, biotin operon repressor / biotin---[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
D CGEO_0872 modE; transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D CGEO_1755 putative transcriptional regulator, ModE family K02019 modE; molybdate transport system regulatory protein
D CGEO_0347 transcriptional regulator, XRE family K07726 K07726; putative transcriptional regulator
D CGEO_0741 putative transcriptional regulator K07726 K07726; putative transcriptional regulator
D CGEO_0960 nikR; nickel responsive regulator K07722 nikR; CopG family transcriptional regulator, nickel-responsive regulator
D CGEO_0360 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CGEO_0740 hrcA; heat-inducible transcription repressor K03705 hrcA; heat-inducible transcriptional repressor
D CGEO_0542 transcriptional regulator, TenA family K03707 tenA; thiaminase (transcriptional activator TenA) [EC:3.5.99.2]
D CGEO_0384 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
C 03021 Transcription machinery [BR:cgeo03021]
D CGEO_1920 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CGEO_0501 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CGEO_0502 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CGEO_1404 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CGEO_0778 rpoD; RNA polymerase sigma70 factor K03086 rpoD; RNA polymerase primary sigma factor
D CGEO_1625 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D CGEO_1546 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D CGEO_0496 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D CGEO_0384 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D CGEO_0284 greA; transcription elongation factor GreA K03624 greA; transcription elongation factor GreA
D CGEO_1627 rho; transcription termination factor K03628 rho; transcription termination factor Rho
C 03019 Messenger RNA biogenesis [BR:cgeo03019]
D CGEO_0032 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CGEO_0111 mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily) K12574 rnj; ribonuclease J [EC:3.1.-.-]
D CGEO_1427 ribonuclease Y K18682 rny; ribonucrease Y [EC:3.1.-.-]
D CGEO_0694 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CGEO_0450 DEAD-box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CGEO_1860 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CGEO_0575 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
D CGEO_1627 rho; transcription termination factor K03628 rho; transcription termination factor Rho
D CGEO_0738 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CGEO_1311 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CGEO_1324 ppk; polyphosphate kinase 1 K00937 ppk1; polyphosphate kinase [EC:2.7.4.1]
D CGEO_0737 ppk2; polyphosphate kinase 2 K22468 ppk2; polyphosphate kinase [EC:2.7.4.34]
D CGEO_0704 rppH; RNA pyrophosphohydrolase K08311 nudH; putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
C 03041 Spliceosome
C 03011 Ribosome [BR:cgeo03011]
D CGEO_0594 rpsA; 30S ribosomal protein S1 K02945 RP-S1; small subunit ribosomal protein S1
D CGEO_0469 rpsB; 30S ribosomal protein S2 K02967 RP-S2; small subunit ribosomal protein S2
D CGEO_1942 rpsC; 30S ribosomal protein S3 K02982 RP-S3; small subunit ribosomal protein S3
D CGEO_1921 rpsD; 30S ribosomal protein S4 K02986 RP-S4; small subunit ribosomal protein S4
D CGEO_1931 rpsE; 30S ribosomal protein S5 K02988 RP-S5; small subunit ribosomal protein S5
D CGEO_0696 rpsF; 30S ribosomal protein S6 K02990 RP-S6; small subunit ribosomal protein S6
D CGEO_0506 rpsG; 30S ribosomal protein S7 K02992 RP-S7; small subunit ribosomal protein S7
D CGEO_1934 rpsH; 30S ribosomal protein S8 K02994 RP-S8; small subunit ribosomal protein S8
D CGEO_1700 rpsI; 30S ribosomal protein S9 K02996 RP-S9; small subunit ribosomal protein S9
D CGEO_1949 rpsJ; 30S ribosomal protein S10 K02946 RP-S10; small subunit ribosomal protein S10
D CGEO_1922 rpsK; 30S ribosomal protein S11 K02948 RP-S11; small subunit ribosomal protein S11
D CGEO_0505 rpsL; 30S ribosomal protein S12 K02950 RP-S12; small subunit ribosomal protein S12
D CGEO_1923 rpsM; 30S ribosomal protein S13 K02952 RP-S13; small subunit ribosomal protein S13
D CGEO_1935 rpsN; 30S ribosomal protein S14 K02954 RP-S14; small subunit ribosomal protein S14
D CGEO_0714 rpsO; 30S ribosomal protein S15 K02956 RP-S15; small subunit ribosomal protein S15
D CGEO_0608 rpsP; 30S ribosomal protein S16 K02959 RP-S16; small subunit ribosomal protein S16
D CGEO_1939 rpsQ; 30S ribosomal protein S17 K02961 RP-S17; small subunit ribosomal protein S17
D CGEO_0698 rpsR; 30S ribosomal protein S18 K02963 RP-S18; small subunit ribosomal protein S18
D CGEO_1944 rpsS; 30S ribosomal protein S19 K02965 RP-S19; small subunit ribosomal protein S19
D CGEO_0140 rpsT; 30S ribosomal protein S20 K02968 RP-S20; small subunit ribosomal protein S20
D CGEO_0167 rpsU; 30S ribosomal protein S21 K02970 RP-S21; small subunit ribosomal protein S21
D CGEO_0498 rplA; 50S ribosomal protein L1 K02863 RP-L1; large subunit ribosomal protein L1
D CGEO_1945 rplB; 50S ribosomal protein L2 K02886 RP-L2; large subunit ribosomal protein L2
D CGEO_1948 rplC; 50S ribosomal protein L3 K02906 RP-L3; large subunit ribosomal protein L3
D CGEO_1947 rplD; 50S ribosomal protein L4 K02926 RP-L4; large subunit ribosomal protein L4
D CGEO_1936 rplE; 50S ribosomal protein L5 K02931 RP-L5; large subunit ribosomal protein L5
D CGEO_1933 rplF; 50S ribosomal protein L6 K02933 RP-L6; large subunit ribosomal protein L6
D CGEO_0922 rplI; 50S ribosomal protein L9 K02939 RP-L9; large subunit ribosomal protein L9
D CGEO_0499 rplJ; 50S ribosomal protein L10 K02864 RP-L10; large subunit ribosomal protein L10
D CGEO_0497 rplK; 50S ribosomal protein L11 K02867 RP-L11; large subunit ribosomal protein L11
D CGEO_0500 rplL; 50S ribosomal protein L7/L12 K02935 RP-L7; large subunit ribosomal protein L7/L12
D CGEO_1701 rplM; 50S ribosomal protein L13 K02871 RP-L13; large subunit ribosomal protein L13
D CGEO_1938 rplN; 50S ribosomal protein L14 K02874 RP-L14; large subunit ribosomal protein L14
D CGEO_1930 rplO; 50S ribosomal protein L15 K02876 RP-L15; large subunit ribosomal protein L15
D CGEO_1941 rplP; 50S ribosomal protein L16 K02878 RP-L16; large subunit ribosomal protein L16
D CGEO_1919 rplQ; 50S ribosomal protein L17 K02879 RP-L17; large subunit ribosomal protein L17
D CGEO_1932 rplR; 50S ribosomal protein L18 K02881 RP-L18; large subunit ribosomal protein L18
D CGEO_0612 rplS; 50S ribosomal protein L19 K02884 RP-L19; large subunit ribosomal protein L19
D CGEO_0126 rplT; 50S ribosomal protein L20 K02887 RP-L20; large subunit ribosomal protein L20
D CGEO_0351 rplU; 50S ribosomal protein L21 K02888 RP-L21; large subunit ribosomal protein L21
D CGEO_1943 rplV; 50S ribosomal protein L22 K02890 RP-L22; large subunit ribosomal protein L22
D CGEO_1946 rplW; 50S ribosomal protein L23 K02892 RP-L23; large subunit ribosomal protein L23
D CGEO_1937 rplX; 50S ribosomal protein L24 K02895 RP-L24; large subunit ribosomal protein L24
D CGEO_0352 rpmA; 50S ribosomal protein L27 K02899 RP-L27; large subunit ribosomal protein L27
D CGEO_0675 rpmB; 50S ribosomal protein L28 K02902 RP-L28; large subunit ribosomal protein L28
D CGEO_1940 rpmC; 50S ribosomal protein L29 K02904 RP-L29; large subunit ribosomal protein L29
D CGEO_0228 rpmE; 50S ribosomal protein L31 K02909 RP-L31; large subunit ribosomal protein L31
D CGEO_0306 rpmF; 50S ribosomal protein L32 K02911 RP-L32; large subunit ribosomal protein L32
D CGEO_0493 rpmG; 50S ribosomal protein L33 K02913 RP-L33; large subunit ribosomal protein L33
D CGEO_1259 rpmH; 50S ribosomal protein L34 K02914 RP-L34; large subunit ribosomal protein L34
D CGEO_0125 rpmI; 50S ribosomal protein L35 K02916 RP-L35; large subunit ribosomal protein L35
D CGEO_1924 rpmJ; 50S ribosomal protein L36 K02919 RP-L36; large subunit ribosomal protein L36
D CGEO_0290 rplY; 50S ribosomal protein L25 K02897 RP-L25; large subunit ribosomal protein L25
D CGEO_1079 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CGEO_1419 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CGEO_1737 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CGEO_1086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1423 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1741 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CGEO_1738 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CGEO_1420 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
C 03009 Ribosome biogenesis [BR:cgeo03009]
D CGEO_0032 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CGEO_0925 era; GTP-binding protein K03595 era; GTPase
D CGEO_0355 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-]
D CGEO_0384 dksA; DnaK suppressor protein K06204 dksA; RNA polymerase-binding transcription factor
D CGEO_1625 nusA; transcription termination factor K02600 nusA; transcription termination/antitermination protein NusA
D CGEO_1546 nusB; transcription antitermination protein K03625 nusB; transcription antitermination protein NusB
D CGEO_0496 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
D CGEO_0110 rsmA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D CGEO_0227 rsmE; 16S rRNA m3U1498 methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D CGEO_0480 rsmG; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CGEO_1222 rsmH; 16S rRNA m4C1402 methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D CGEO_0229 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D CGEO_0710 tlyA; 16S/23S rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D CGEO_0230 rRNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D CGEO_0383 SPOUT methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177]
D CGEO_0107 rlmN; 23S rRNA m2A2503 methyltransferase / tRNA m2A37 methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D CGEO_0113 rluB; 23S rRNA pseudouridine 2605 synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
D CGEO_0105 RNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CGEO_0606 rluA; 23S rRNA and tRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CGEO_1411 rluD; 23S rRNA pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D CGEO_1728 rimI; ribosomal-protein-S18-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
D CGEO_0610 rimM; 16S rRNA processing protein K02860 rimM; 16S rRNA processing protein RimM
D CGEO_1616 radical SAM methylthiotransferase, MiaB/RimO family K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
D CGEO_1564 prmA; 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
D CGEO_0690 Holliday junction resolvase-like protein (UPF0081 domain) K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
D CGEO_0450 DEAD-box ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
D CGEO_1550 engA; GTP-binding protein K03977 engA; GTPase
D CGEO_1403 spoT; ppGpp synthetase / guanosine-3',5'-bis(diphosphate) 3' pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
D CGEO_0395 rbfA; ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
D CGEO_0396 DUF150 domain-containing protein K09748 rimP; ribosome maturation factor RimP
D CGEO_1377 ybeY; rRNA maturation RNase K07042 ybeY; probable rRNA maturation factor
D CGEO_0687 raiA; translation inhibitor protein RaiA K05808 hpf; ribosome hibernation promoting factor
D CGEO_1354 ychF; GTP-binding protein, putative GTP-dependent translation factor K06942 ychF; ribosome-binding ATPase
C 03016 Transfer RNA biogenesis [BR:cgeo03016]
D CGEO_0788 cca; multifunctional tRNA nucleotidyl transferase / 2'3'-cyclic phosphodiesterase / 2'nucleotidase / phosphatase K00974 cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
D CGEO_1367 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_1811 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_1147 proS; prolyl-tRNA synthetase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D CGEO_0525 ileS; isoleucyl-tRNA synthetase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D CGEO_0662 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CGEO_1361 metS; methionyl-tRNA synthetase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D CGEO_0475 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CGEO_1607 lysS; lysyl-tRNA synthetase K04567 KARS; lysyl-tRNA synthetase, class II [EC:6.1.1.6]
D CGEO_1392 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CGEO_0624 alaS; alanyl-tRNA synthetase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D CGEO_0123 thrS; threonyl-tRNA synthetase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D CGEO_1557 serS; seryl-tRNA synthetase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D CGEO_1015 cysS; cysteinyl-tRNA synthetase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D CGEO_1065 valS; valyl-tRNA synthetase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D CGEO_0991 hisS; histidyl-tRNA synthetase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CGEO_1717 hisZ; ATP phosphoribosyltransferase HisG(S)Z, hetero-octameric short form, regulatory subunit K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D CGEO_0590 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D CGEO_0591 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D CGEO_1402 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CGEO_1552 trpS; tryptophanyl-tRNA synthetase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D CGEO_0588 histidine triad nucleotide-binding protein, Hint/PKCI branch K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CGEO_1409 trmI; tRNA m7G46 methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D CGEO_0857 truA; tRNA pseudouridine(38-40) synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D CGEO_0640 truB; tRNA pseudouridine 55 synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
D CGEO_1140 truD; tRNA pseudouridine 13 synthase K06176 truD; tRNA pseudouridine13 synthase [EC:5.4.99.27]
D CGEO_0175 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CGEO_0220 miaA; tRNA(i6A37) synthase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D CGEO_1254 mnmE; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, GTPase component K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D CGEO_0461 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CGEO_1752 selD; selenophosphate synthetase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D CGEO_1024 cysQ1; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CGEO_1837 cysQ2; adenosine-3'(2'),5'-bisphosphate nucleotidase K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
D CGEO_1139 rnpB; ribonuclease P, RNA component K01978 rnpB; M1 RNA
D CGEO_0602 glyQ; glycyl-tRNA synthetase, alpha chain K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D CGEO_0792 glyS; glycyl-tRNA synthetase, beta chain K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D CGEO_0820 ybaK; cysteinyl-tRNA(Pro) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D CGEO_0386 dusB; tRNA-dihydrouridine synthase B K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
D CGEO_1623 miaB; isopentenyl-adenosine A37 tRNA methylthiolase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D CGEO_0713 cmoA; carboxy-S-adenosyl-L-methionine synthase K15256 cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
D CGEO_0759 cmoB; tRNA (cmo5U34)-carboxymethyltransferase K15257 cmoB; tRNA (mo5U34)-methyltransferase [EC:2.1.1.-]
D CGEO_0849 trmA; tRNA m5U54 methyltransferase K00557 trmA; tRNA (uracil-5-)-methyltransferase [EC:2.1.1.35]
D CGEO_0611 trmD; tRNA m1G37 methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D CGEO_0790 rRNA methylase, SpoU family K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D CGEO_1133 yfiC; tRNA m6A37 methyltransferase K15460 yfiC; tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223]
D CGEO_0036 tRNA U34 2-thiouridine synthase, MnmA family K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CGEO_0409 mnmA; tRNA U34 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D CGEO_0377 ttcA; tRNA cytosine32 2-sulfurtransferase K14058 ttcA; tRNA 2-thiocytidine biosynthesis protein TtcA
D CGEO_1399 mnmC; bifunctional 5-methylaminomethyl-2-thiouridine-forming methyltransferase / FAD-dependent demodification enzyme K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D CGEO_0699 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D CGEO_1376 queC; 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D CGEO_0225 queD; 6-carboxy-5,6,7,8-tetrahydropterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D CGEO_0224 queE; 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D CGEO_0005 queF; 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D CGEO_0252 DUF208 domain-containing protein K09765 queH; epoxyqueuosine reductase [EC:1.17.99.6]
D CGEO_0879 tgt; queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D CGEO_1617 tilS; tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D CGEO_1851 tsaD; N6-L-threonylcarbamoyladenine synthase, TsaD subunit K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D CGEO_0919 tsaE; N6-L-threonylcarbamoyladenine synthase, TsaE subunit K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
D CGEO_0280 tcdA; tRNA threonylcarbamoyladenosine dehydratase K22132 tcdA; tRNA threonylcarbamoyladenosine dehydratase
D CGEO_0694 rnr; ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
D CGEO_0575 pnp; polynucleotide phosphorylase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
C 03012 Translation factors [BR:cgeo03012]
D CGEO_0394 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CGEO_0124 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CGEO_0470 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D CGEO_0492 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CGEO_0507 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CGEO_1802 selB; selenocysteine-specific elongation factor K03833 selB; selenocysteine-specific elongation factor
D CGEO_0141 prfA; peptide chain release factor 1 K02835 prfA; peptide chain release factor 1
D CGEO_0020 frr; ribosome releasing factor K02838 frr; ribosome recycling factor
D CGEO_1270 hemK; protein-(glutamine-N5) methyltransferase K02493 hemK; release factor glutamine methyltransferase [EC:2.1.1.297]
D CGEO_0291 pth; peptidyl-tRNA hydrolase K01056 PTH1; peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
D CGEO_1925 infA; translation initiation factor IF-1 K02518 infA; translation initiation factor IF-1
D CGEO_1507 efp; translation elongation factor EF-P K02356 efp; elongation factor P
D CGEO_1613 prfB; peptide chain release factor 2 K02836 prfB; peptide chain release factor 2
C 03110 Chaperones and folding catalysts [BR:cgeo03110]
D CGEO_0645 clpA; ATP-dependent protease specificity component and chaperone K03694 clpA; ATP-dependent Clp protease ATP-binding subunit ClpA
D CGEO_0953 clpB; ClpB chaperone K03695 clpB; ATP-dependent Clp protease ATP-binding subunit ClpB
D CGEO_0255 clpX; ATP-dependent protease specificity component and chaperone K03544 clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
D CGEO_0924 hslU; heat shock protein HslVU, ATPase subunit K03667 hslU; ATP-dependent HslUV protease ATP-binding subunit HslU
D CGEO_0947 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CGEO_0738 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CGEO_1311 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CGEO_0563 dnaJ; DnaK system heat shock co-chaperone K03686 dnaJ; molecular chaperone DnaJ
D CGEO_1160 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D CGEO_1239 djlA; DnaJ-like membrane chaperone protein K05801 djlA; DnaJ like chaperone protein
D CGEO_0739 grpE; DnaK system nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D CGEO_1312 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D CGEO_1161 htrA; periplasmic heat shock serine protease HtrA, Do family K04771 degP; serine protease Do [EC:3.4.21.107]
D CGEO_0884 ftsH1; integral membrane ATP-dependent zinc metallopeptidase K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CGEO_1563 ftsH2; integral membrane ATP-dependent zinc metallopeptidase (extracellular domain) K03798 ftsH; cell division protease FtsH [EC:3.4.24.-]
D CGEO_0811 atpB; ATP synthase, F0 complex, a subunit K02108 ATPF0A; F-type H+-transporting ATPase subunit a
D CGEO_0969 hypA; hydrogenase nickel insertion protein HypA K04651 hypA; hydrogenase nickel incorporation protein HypA/HybF
D CGEO_0963 hypB; hydrogenase nickel insertion protein HypB K04652 hypB; hydrogenase nickel incorporation protein HypB
D CGEO_1090 Nitrate_red_del domain-containing protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D CGEO_1857 hypothetical protein K23349 dmsD; putative dimethyl sulfoxide reductase chaperone
D CGEO_0839 ppiB1; peptidyl-prolyl cis-trans isomerase B K03768 PPIB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
D CGEO_1224 putative periplasmic folding chaperone K03770 ppiD; peptidyl-prolyl cis-trans isomerase D [EC:5.2.1.8]
D CGEO_0374 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase K03775 slyD; FKBP-type peptidyl-prolyl cis-trans isomerase SlyD [EC:5.2.1.8]
D CGEO_0762 peb4; major antigenic peptide / PpiC-type peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CGEO_1072 SurA-like chaperone / peptidyl-prolyl cis-trans isomerase K03769 ppiC; peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8]
D CGEO_0236 trxA; thioredoxin K03671 TXN; thioredoxin
D CGEO_1508 protein disulfide isomerase, DsbG family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CGEO_1803 protein disulfide isomerase, DsbG family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CGEO_0736 dsbD; thiol:disulfide interchange protein DsbD K04084 dsbD; thioredoxin:protein disulfide reductase [EC:1.8.4.16]
C 04131 Membrane trafficking [BR:cgeo04131]
D CGEO_0308 ndk; nucleoside diphosphate kinase K00940 ndk; nucleoside-diphosphate kinase [EC:2.7.4.6]
D CGEO_0834 putative flotillin family protein, SPFH superfamily K07192 FLOT; flotillin
D CGEO_1593 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CGEO_0558 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CGEO_0947 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CGEO_0798 putative lipid-binding protein (SYLF/DUF500 domain) K20523 SH3YL1; SH3 domain-containing YSC84-like protein 1
C 04121 Ubiquitin system
C 03051 Proteasome [BR:cgeo03051]
D CGEO_0947 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
C 03032 DNA replication proteins [BR:cgeo03032]
D CGEO_0033 rnhA; ribonuclease HI K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
D CGEO_1554 type II cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CGEO_1216 PIF1-like helicase K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D CGEO_0893 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CGEO_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CGEO_1300 dnaB; replicative DNA helicase K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
D CGEO_0035 dnaG; DNA primase K02316 dnaG; DNA primase [EC:2.7.7.101]
D CGEO_0697 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CGEO_1499 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CGEO_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CGEO_0695 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CGEO_0707 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CGEO_0673 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CGEO_1626 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CGEO_1952 rnhB; ribonuclease HII K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
D CGEO_0709 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CGEO_0430 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CGEO_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CGEO_1833 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
C 03036 Chromosome and associated proteins [BR:cgeo03036]
D CGEO_1554 type II cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CGEO_0032 rnc; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D CGEO_0834 putative flotillin family protein, SPFH superfamily K07192 FLOT; flotillin
D CGEO_0893 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CGEO_1160 cbpA; co-chaperone-curved DNA binding protein A K05516 cbpA; curved DNA-binding protein
D CGEO_0001 dnaA; chromosomal replication initiator protein K02313 dnaA; chromosomal replication initiator protein
D CGEO_1433 DNA-binding ferritin-like protein K04047 dps; starvation-inducible DNA-binding protein
D CGEO_1225 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CGEO_1408 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CGEO_0628 ftsI; cell division protein FtsI / penicillin-binding protein K03587 ftsI; cell division protein FtsI (penicillin-binding protein 3) [EC:3.4.16.4]
D CGEO_0935 ftsK; DNA segregation ATPase FtsK/SpoIIIE K03466 ftsK; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
D CGEO_0937 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CGEO_1407 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CGEO_1226 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CGEO_1400 amiA; N-acetylmuramoyl-L-alanine amidase K01448 amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]
D CGEO_0170 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CGEO_0256 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CGEO_0257 mreC; rod shape-determining protein MreC K03570 mreC; rod shape-determining protein MreC
D CGEO_1412 rodA; rod shape-determining protein K05837 rodA; rod shape determining protein RodA
D CGEO_0359 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D CGEO_0360 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
D CGEO_0461 mnmG; 5-carboxymethylaminomethyluridine-tRNA synthase MnmEG, MnmG component K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D CGEO_0480 rsmG; 16S rRNA m7G527 methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D CGEO_1039 xerH; integrase / recombinase K04763 xerD; integrase/recombinase XerD
D CGEO_1459 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CGEO_1382 engB; ribosome biogenesis GTP-binding protein YsxC/EngB K03978 engB; GTP-binding protein
C 03400 DNA repair and recombination proteins [BR:cgeo03400]
D CGEO_0845 ogt; O6-alkylguanine-DNA-alkyltransferase K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
D CGEO_0121 ung; uracil-DNA glycosylase, family 1 K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
D CGEO_0761 nth; endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
D CGEO_1269 uracil-DNA glycosylase, family 4 K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
D CGEO_0201 xth; exodeoxyribonuclease III (exonuclease III) K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
D CGEO_0158 nfo; endonuclease IV K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
D CGEO_0072 recJ; single-stranded DNA-specific exonuclease K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
D CGEO_0709 ligA; DNA ligase, NAD-dependent K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
D CGEO_0328 uvrA; UvrABC nucleotide excision repair complex, subunit UvrA K03701 uvrA; excinuclease ABC subunit A
D CGEO_1467 uvrB; UvrABC nucleotide excision repair complex, subunit UvrB K03702 uvrB; excinuclease ABC subunit B
D CGEO_0567 uvrC; UvrABC nucleotide excision repair complex, subunit UvrC K03703 uvrC; excinuclease ABC subunit C
D CGEO_0639 UvrD/REP family helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CGEO_1060 rep; ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
D CGEO_0501 rpoB; DNA-directed RNA polymerase, beta subunit K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
D CGEO_0502 rpoC; DNA-directed RNA polymerase, beta' subunit K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
D CGEO_1920 rpoA; DNA-directed RNA polymerase, alpha subunit K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
D CGEO_1404 rpoZ; DNA-directed RNA polymerase, omega subunit K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
D CGEO_0666 mfd; transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
D CGEO_0535 mutS2; DNA mismatch binding protein, MutS2 family K07456 mutS2; DNA mismatch repair protein MutS2
D CGEO_1553 mutH; DNA mismatch repair protein MutH K03573 mutH; DNA mismatch repair protein MutH
D CGEO_0300 xseA; exodeoxyribonuclease VII, large subunit K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
D CGEO_0529 xseB; exodeoxyribonuclease VII, small subunit K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
D CGEO_1499 dnaE; DNA polymerase III, alpha subunit K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
D CGEO_0002 dnaN; DNA polymerase III, beta subunit K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
D CGEO_0695 holA; DNA polymerase III, delta subunit K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
D CGEO_0707 holB; DNA polymerase III, delta prime subunit K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
D CGEO_0673 dnaQ; DNA polymerase III, epsilon subunit K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
D CGEO_1626 dnaX; DNA polymerase III, gamma and tau subunits K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
D CGEO_0697 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CGEO_1861 recA; recombinase K03553 recA; recombination protein RecA
D CGEO_1009 ruvA; RuvABC resolvasome, subunit RuvA K03550 ruvA; holliday junction DNA helicase RuvA
D CGEO_1117 ruvB; RuvABC resolvasome, subunit RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
D CGEO_1971 ruvC; RuvABC resolvasome, subunit RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
D CGEO_1374 priA; primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
D CGEO_1431 radA; DNA repair and recombination protein K04485 radA; DNA repair protein RadA/Sms
D CGEO_1327 recG; ATP-dependent DNA helicase K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
D CGEO_0560 recR; recombination protein K06187 recR; recombination protein RecR
D CGEO_1390 recN; DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N)
D CGEO_0115 cas1b; CRISPR/Cas system-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D CGEO_0652 cas1; CRISPR/Cas system-associated endonuclease Cas1, type I-B K15342 cas1; CRISP-associated protein Cas1
D CGEO_0430 gyrA; DNA gyrase, subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
D CGEO_0003 gyrB; DNA gyrase, subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
D CGEO_1833 topA; DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
D CGEO_0893 hup; DNA-binding protein HU K03530 hupB; DNA-binding protein HU-beta
D CGEO_1127 dinP; DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
D CGEO_0346 DNA-damage-inducible protein D K14623 dinD; DNA-damage-inducible protein D
D CGEO_0103 nrdA; aerobic ribonucleoside-diphosphate reductase Ia, B1 protein subunit NrdA K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
D CGEO_0088 nrdB; aerobic ribonucleoside-diphosphate reductase Ia, B2 protein subunit NrdB K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
C 03029 Mitochondrial biogenesis [BR:cgeo03029]
D CGEO_0459 petB; ubiquinol cytochrome c oxidoreductase PetABC, cytochrome b subunit K00412 CYTB; ubiquinol-cytochrome c reductase cytochrome b subunit
D CGEO_0394 infB; translation initiation factor IF-2 K02519 infB; translation initiation factor IF-2
D CGEO_0124 infC; translation initiation factor IF-3 K02520 infC; translation initiation factor IF-3
D CGEO_0470 tsf; translation elongation factor EF-Ts K02357 tsf; elongation factor Ts
D CGEO_0492 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CGEO_0507 fusA; translation elongation factor EF-G K02355 fusA; elongation factor G
D CGEO_0925 era; GTP-binding protein K03595 era; GTPase
D CGEO_1402 tyrS; tyrosyl-tRNA synthetase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D CGEO_0662 leuS; leucyl-tRNA synthetase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D CGEO_1392 aspS; aspartyl-tRNA synthetase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D CGEO_0475 argS; arginyl-tRNA synthetase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D CGEO_0526 gatA; Glu-tRNA(Gln) amidotransferase, subunit A K02433 gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
D CGEO_0813 gatB; Glu-tRNA(Gln) amidotransferase, subunit B K02434 gatB; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
D CGEO_1603 gatC; Glu-tRNA(Gln) amidotransferase, subunit C K02435 gatC; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
D CGEO_1216 PIF1-like helicase K15255 PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]
D CGEO_0697 ssb; single-stranded DNA binding protein K03111 ssb; single-strand DNA-binding protein
D CGEO_0388 beta-barrel assembly machinery complex, BamA/YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CGEO_0738 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CGEO_0739 grpE; DnaK system nucleotide exchange factor GrpE K03687 GRPE; molecular chaperone GrpE
D CGEO_1311 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CGEO_1312 groES; 10 kD chaperonin (cpn10) K04078 groES; chaperonin GroES
D CGEO_0563 dnaJ; DnaK system heat shock co-chaperone K03686 dnaJ; molecular chaperone DnaJ
D CGEO_0175 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D CGEO_1459 mrp; ATP/GTP-binding protein K03593 mrp; ATP-binding protein involved in chromosome partitioning
D CGEO_1256 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CGEO_0947 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
B
B 09183 Protein families: signaling and cellular processes
C 02000 Transporters [BR:cgeo02000]
D CGEO_1016 msbA; lipid A export ATP-binding/permease protein K11085 msbA; ATP-binding cassette, subfamily B, bacterial MsbA [EC:7.5.2.6]
D CGEO_1170 type I secretion system ABC transporter, HlyB family K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D CGEO_1185 type I secretion system ABC transporter, HlyB family K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D CGEO_0877 macB; macrolide-specific efflux protein, ATP-binding/permease protein MacB K05685 macB; macrolide transport system ATP-binding/permease protein [EC:7.6.2.-]
D CGEO_1828 ABC transporter, ATP-binding/permease components K06159 yojI; multidrug/microcin transport system ATP-binding/permease protein
D CGEO_1277 ABC transporter, ATP-binding protein K15738 uup; ABC transport system ATP-binding/permease protein
D CGEO_0871 modA; molybdenum ABC transporter ModABC, periplasmic molybdate-binding protein K02020 modA; molybdate transport system substrate-binding protein
D CGEO_0869 modB; molybdenum ABC transporter ModABC, permease protein K02018 modB; molybdate transport system permease protein
D CGEO_0868 modC; molybdenum ABC transporter ModABC, ATP-binding protein K02017 modC; molybdate transport system ATP-binding protein [EC:7.3.2.5]
D CGEO_1438 tupA; tungsten ABC transporter TupABC, periplasmic tungstate-binding protein K05772 tupA; tungstate transport system substrate-binding protein
D CGEO_1437 tupB; tungsten ABC transporter TupABC, permease protein K05773 tupB; tungstate transport system permease protein
D CGEO_1436 tupC; tungsten ABC transporter TupABC, ATP-binding protein K06857 tupC; tungstate transport system ATP-binding protein [EC:7.3.2.6]
D CGEO_0467 iron(III) ABC transporter, periplasmic iron-binding protein K02012 afuA; iron(III) transport system substrate-binding protein
D CGEO_0466 iron(III) ABC transporter, permease protein K02011 afuB; iron(III) transport system permease protein
D CGEO_0465 iron(III) ABC transporter, ATP-binding protein K02010 afuC; iron(III) transport system ATP-binding protein [EC:7.2.2.7]
D CGEO_1966 glycine betaine/L-proline ABC transporter, permease/substrate-binding subunit, fused OpuBB/OpuBC K05845 opuC; osmoprotectant transport system substrate-binding protein
D CGEO_1965 glycine betaine/L-proline ABC transporter, ATP binding subunit OpuBA K05847 opuA; osmoprotectant transport system ATP-binding protein [EC:7.6.2.9]
D CGEO_1052 nitrate/sulfonate/bicarbonate ABC transporter, periplasmic substrate-binding protein K02051 ABC.SN.S; NitT/TauT family transport system substrate-binding protein
D CGEO_1051 nitrate/sulfonate/bicarbonate ABC transporter, permease protein K02050 ABC.SN.P; NitT/TauT family transport system permease protein
D CGEO_1050 nitrate/sulfonate/bicarbonate ABC transporter, ATP-binding protein K02049 ABC.SN.A; NitT/TauT family transport system ATP-binding protein
D CGEO_1011 mlaD; lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaD K02067 mlaD; phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein
D CGEO_1013 mlaE; lipid asymmetry ABC transporter MlaABCDEF, permease component MlaE K02066 mlaE; phospholipid/cholesterol/gamma-HCH transport system permease protein
D CGEO_1012 mlaF; lipid asymmetry ABC transporter MlaABCDEF, ATPase component MlaF K02065 mlaF; phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein
D CGEO_1010 putative lipid asymmetry ABC transporter MlaABCDEF component MlaB K18480 linN; cholesterol transport system auxiliary component
D CGEO_1721 mlaC; lipid asymmetry ABC transporter MlaABCDEF, periplasmic component MlaC K07323 mlaC; phospholipid transport system substrate-binding protein
D CGEO_1682 monosaccharide ABC transporter, periplasmic substrate-binding protein K02058 ABC.SS.S; simple sugar transport system substrate-binding protein
D CGEO_1680 monosaccharide ABC transporter, permease protein K02057 ABC.SS.P; simple sugar transport system permease protein
D CGEO_1681 monosaccharide ABC transporter, ATP-binding protein K02056 ABC.SS.A; simple sugar transport system ATP-binding protein [EC:7.5.2.-]
D CGEO_1280 phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CGEO_1284 pstS; phosphate ABC transporter, periplasmic phosphate-binding protein K02040 pstS; phosphate transport system substrate-binding protein
D CGEO_1283 pstC; phosphate ABC transporter, permease protein K02037 pstC; phosphate transport system permease protein
D CGEO_1282 pstA; phosphate ABC transporter, permease protein (DUF3333 domain) K02038 pstA; phosphate transport system permease protein
D CGEO_1281 pstB; phosphate ABC transporter, ATP-binding protein K02036 pstB; phosphate transport system ATP-binding protein [EC:7.3.2.1]
D CGEO_1491 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CGEO_1492 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K23059 artP; arginine/lysine/histidine transporter system substrate-binding protein
D CGEO_1489 amino acid ABC transporter, permease protein K17077 artQ; arginine/lysine/histidine transport system permease protein
D CGEO_1490 amino acid ABC transporter, ATP-binding protein K23060 artR; arginine/lysine/histidine transport system ATP-binding protein [EC:7.4.2.1]
D CGEO_1070 metQ1; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CGEO_1071 metQ2; DL-methionine ABC transporter MetINQ, substrate-binding protein K02073 metQ; D-methionine transport system substrate-binding protein
D CGEO_1069 metI; DL-methionine ABC transporter MetINQ, permease protein K02072 metI; D-methionine transport system permease protein
D CGEO_1067 metN; DL-methionine ABC transporter MetINQ, ATP-binding protein K02071 metN; D-methionine transport system ATP-binding protein
D CGEO_0238 amino acid ABC transporter, periplasmic amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_0239 periplasmic cysteine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_0259 amino acid ABC transporter, periplasmic cysteine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_0321 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_0353 amino acid ABC transporter, periplasmic cysteine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_0539 periplasmic substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_0540 periplasmic substrate-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_1674 amino acid ABC transporter, periplasmic amino acid-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_1744 periplasmic cysteine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_1950 amino acid ABC transporter, periplasmic arginine/lysine/histidine-binding protein K02030 ABC.PA.S; polar amino acid transport system substrate-binding protein
D CGEO_1819 chuD; heme ABC transporter ChuBCD, periplasmic substrate-binding protein K25034 btuF; cobalamin transport system substrate-binding protein
D CGEO_1821 chuB; heme ABC transporter ChuBCD, permease protein K25027 btuC; cobalamin transport system permease protein
D CGEO_1820 chuC; heme ABC transporter ChuBCD, ATP-binding protein K25028 btuD; cobalamin transport system ATP-binding protein [EC:7.6.2.8]
D CGEO_0148 metal ion ABC transporter, periplasmic metal-binding protein K09815 znuA; zinc transport system substrate-binding protein
D CGEO_0146 metal ion ABC transporter, membrane protein K09816 znuB; zinc transport system permease protein
D CGEO_0147 metal ion ABC transporter, ATP-binding protein K09817 znuC; zinc transport system ATP-binding protein [EC:7.2.2.20]
D CGEO_0724 cbiQ; cobalt/nickel ECF transporter CbiMNQO, T component CbiQ K02008 cbiQ; cobalt/nickel transport system permease protein
D CGEO_0722 cbiM; cobalt/nickel ECF transporter CbiMNQO, S component CbiM K02007 cbiM; cobalt/nickel transport system permease protein
D CGEO_0725 cbiO; cobalt/nickel ECF transporter CbiMNQO, A component, ATP-binding protein CbiO K02006 cbiO; cobalt/nickel transport system ATP-binding protein
D CGEO_1671 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein
D CGEO_1075 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein
D CGEO_0721 DUF4198 domain-containing protein K10094 cbiK; nickel transport protein
D CGEO_0723 cbiN; cobalt/nickel ECF transporter CbiMNQO, S component CbiN K16915 cbiL; nickel transport protein
D CGEO_1076 putative membrane protein K16915 cbiL; nickel transport protein
D CGEO_0858 lptF; lipooligosaccharide transport system, ABC transporter permease component LptF K07091 lptF; lipopolysaccharide export system permease protein
D CGEO_0292 lptG; lipooligosaccharide transport system, ABC transporter permease component LptG K11720 lptG; lipopolysaccharide export system permease protein
D CGEO_0918 lptB; lipooligosaccharide transport system, ABC transporter ATP-binding component LptB K06861 lptB; lipopolysaccharide export system ATP-binding protein [EC:7.5.2.5]
D CGEO_0794 multidrug resistance ABC transporter, permease protein K25180 ybhR; drug efflux transport system permease protein
D CGEO_0795 multidrug resistance ABC transporter, permease protein K25181 ybhS; drug efflux transport system permease protein
D CGEO_0796 multidrug resistance ABC transporter, ATP-binding protein K25182 ybhF; drug efflux transport system ATP-binding protein
D CGEO_0797 multidrug resistance efflux protein, EmrA family K25183 ybhG; membrane fusion protein YbhG
D CGEO_1407 ftsX; cell division protein FtsX K09811 ftsX; cell division transport system permease protein
D CGEO_1408 ftsE; cell division ATP-binding protein FtsE K09812 ftsE; cell division transport system ATP-binding protein
D CGEO_1892 nosY; copper ABC transporter NosDFY, putative permease protein NosY K01992 ABC-2.P; ABC-2 type transport system permease protein
D CGEO_1676 ABC transporter, ATP-binding protein K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CGEO_1894 nosF; copper ABC transporter NosDFY, putative ATP-binding protein NosF K01990 ABC-2.A; ABC-2 type transport system ATP-binding protein
D CGEO_1209 lolC; lipoprotein releasing system, transmembrane protein, LolC/E family K02004 ABC.CD.P; putative ABC transport system permease protein
D CGEO_1664 ferrirhodotorulic acid ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CGEO_1665 ferrirhodotorulic acid ABC transporter, permease protein K02004 ABC.CD.P; putative ABC transport system permease protein
D CGEO_0471 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CGEO_0552 ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CGEO_1666 ferrirhodotorulic acid ABC transporter, ATP-binding protein K02003 ABC.CD.A; putative ABC transport system ATP-binding protein
D CGEO_0049 sodium:dicarboxylate cotransporter (permease SLC13 domain) K14445 SLC13A2_3_5; solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2/3/5
D CGEO_1288 MATE family efflux protein K26937 dinF; MATE family, multidrug efflux pump
D CGEO_0775 fucP; L-fucose permease K02429 fucP; MFS transporter, FHS family, L-fucose permease
D CGEO_1099 major facilitator superfamily transporter K08224 ynfM; MFS transporter, YNFM family, putative membrane transport protein
D CGEO_0676 putative potassium channel protein (TrkA domain) K10716 kch; voltage-gated potassium channel
D CGEO_0617 von Willebrand factor type A (vWA) domain-containing protein (BatA domain), putative oxygen tolerance protein BatA K07114 yfbK; Ca-activated chloride channel homolog
D CGEO_0618 von Willebrand factor type A (vWA) domain-containing protein (BatA domain), putative oxygen tolerance protein BatA K07114 yfbK; Ca-activated chloride channel homolog
D CGEO_0619 tetratricopeptide repeat protein K07114 yfbK; Ca-activated chloride channel homolog
D CGEO_0023 BAX inhibitor (BI)-1 like protein (UPF0005 domain) K19416 yccA; modulator of FtsH protease
D CGEO_1651 foc; formate/nitrite transporter K21993 fdhC; formate transporter
D CGEO_1368 mscL; large conductance mechanosensitive channel protein K03282 mscL; large conductance mechanosensitive channel
D CGEO_0025 mscS; small conductance mechanosensitive channel protein K16052 ynaI; MscS family membrane protein
D CGEO_1317 magnesium/cobalt/nickel transporter, MgtE family K06213 mgtE; magnesium transporter
D CGEO_0765 OmpA domain-containing protein K02557 motB; chemotaxis protein MotB
D CGEO_0190 exbB1; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CGEO_0332 exbB2; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CGEO_0368 tolQ; Tol-Pal system subunit TolQ K03561 exbB; biopolymer transport protein ExbB
D CGEO_1824 exbB3; TonB system transport protein ExbB K03561 exbB; biopolymer transport protein ExbB
D CGEO_0189 exbD1; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D CGEO_0331 exbD2; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D CGEO_0369 tolR; Tol-Pal system subunit TolR K03559 exbD; biopolymer transport protein ExbD
D CGEO_1823 exbD3; TonB system transport protein ExbD K03559 exbD; biopolymer transport protein ExbD
D CGEO_0457 corAII; magnesium and cobalt transport protein (Thermotoga maritima CorA-like family) K03284 corA; magnesium transporter
D CGEO_1770 crcB; putative fluoride ion transporter K06199 crcB; fluoride exporter
D CGEO_1871 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
D CGEO_0193 hypothetical protein K16079 omp31; outer membrane immunogenic protein
D CGEO_0548 OmpA domain-containing protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D CGEO_1699 cadF; outer membrane fibronectin-binding protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D CGEO_1775 OmpA domain-containing protein K03286 TC.OOP; OmpA-OmpF porin, OOP family
D CGEO_1326 outer membrane transporter (OMPP1/FadL/TodX family) K06076 fadL; long-chain fatty acid transport protein
D CGEO_1853 TonB-dependent receptor K16089 TC.FEV.OM2; outer membrane receptor for ferrienterochelin and colicins
D CGEO_0191 TonB-dependent receptor K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D CGEO_0333 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D CGEO_0334 TonB-dependent heme/hemoglobin receptor family protein K16087 TC.FEV.OM3; hemoglobin/transferrin/lactoferrin receptor protein
D CGEO_1119 TonB-dependent receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CGEO_1822 chuA; heme uptake system outer membrane receptor K02014 TC.FEV.OM; iron complex outermembrane recepter protein
D CGEO_0172 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
D CGEO_1955 outer membrane porin, OprD family K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D CGEO_0388 beta-barrel assembly machinery complex, BamA/YaeT protein K07277 SAM50; outer membrane protein insertion porin family
D CGEO_0682 beta-barrel assembly machinery complex, BamD/YfiO lipoprotein K05807 bamD; outer membrane protein assembly factor BamD
D CGEO_0547 putative autotransporter adhesin (YadA domain) K21449 ata; trimeric autotransporter adhesin
D CGEO_0833 RTX toxin-related calcium-binding protein (peptidase M10 serralysin domains) K21449 ata; trimeric autotransporter adhesin
D CGEO_1190 RTX toxin-related calcium-binding protein (peptidase M10 serralysin domains) K21449 ata; trimeric autotransporter adhesin
D CGEO_1639 putative autotransporter adhesin (YadA domain) K21449 ata; trimeric autotransporter adhesin
D CGEO_1383 lptA; lipooligosaccharide transport system, periplasmic component LptA K09774 lptA; lipopolysaccharide export system protein LptA
D CGEO_0573 lptD; lipooligosaccharide transport system, OM translocon component LptD K04744 lptD; LPS-assembly protein
D CGEO_0451 amino acid transporter, LysP family K16235 mmuP; S-methylmethionine transporter
D CGEO_0084 divalent metal cation transporter K16264 czcD; cobalt-zinc-cadmium efflux system protein
D CGEO_1295 divalent metal cation transporter (ZT_dimer domain) K13283 fieF; ferrous-iron efflux pump FieF
D CGEO_0398 zupT; zinc transporter K07238 TC.ZIP; zinc transporter, ZIP family
D CGEO_0171 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CGEO_0380 multidrug efflux system protein, EmrE family K11741 sugE; quaternary ammonium compound-resistance protein SugE
D CGEO_0337 rarD1; resistance permease RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D CGEO_0816 rarD2; resistance permease RarD K05786 rarD; chloramphenicol-sensitive protein RarD
D CGEO_1276 DMT family transporter K09936 TC.BAT2; bacterial/archaeal transporter family-2 protein
D CGEO_0037 UPF0060 domain-containing membrane protein K09771 TC.SMR3; small multidrug resistance family-3 protein
D CGEO_1517 putative gluconate permease, GntP family K13629 dsdX; D-serine transporter
D CGEO_1968 YuiF family protein, putative amino acid transporter K07084 yuiF; putative amino acid transporter
D CGEO_1839 GntP family permease, putative gluconate transporter K03299 TC.GNTP; gluconate:H+ symporter, GntP family
D CGEO_1927 anaerobic C4-dicarboxylate transporter, DcuA/DcuB family K07791 dcuA; anaerobic C4-dicarboxylate transporter DcuA
D CGEO_0098 anaerobic C4-dicarboxylate transporter, DcuA/DcuB family K07792 dcuB; anaerobic C4-dicarboxylate transporter DcuB
D CGEO_1359 lctP; L-lactate permease K03303 lutP; lactate permease
D CGEO_1964 BCCT (betaine/carnitine/choline) family transporter K02168 betT; choline/glycine/proline betaine transport protein
D CGEO_0720 tellurite-resistance/dicarboxylate transporter (TDT) family protein K03304 tehA; tellurite resistance protein
D CGEO_0635 sstT; sodium ion-motive force-driven serine/threonine transporter K07862 sstT; serine/threonine transporter
D CGEO_0428 gltS1; sodium:glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D CGEO_1779 gltS2; sodium:glutamate symport carrier protein K03312 gltS; glutamate:Na+ symporter, ESS family
D CGEO_0136 nhaA1; sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D CGEO_1614 nhaA2; sodium:proton antiporter K03313 nhaA; Na+:H+ antiporter, NhaA family
D CGEO_1158 potassium:proton antiporter K11105 cvrA; potassium/hydrogen antiporter
D CGEO_1500 ktrB; potassium transporter KtrAB, KtrB subunit K03498 trkH; trk/ktr system potassium uptake protein
D CGEO_1501 ktrA; potassium transporter KtrAB, KtrA subunit K03499 trkA; trk/ktr system potassium uptake protein
D CGEO_1850 xanthine/uracil permease K02824 uraA; uracil permease
D CGEO_1101 xanthine/uracil/vitamin C permease K06901 pbuG; adenine/guanine/hypoxanthine permease
D CGEO_0793 sulfate permease K03321 TC.SULP; sulfate permease, SulP family
D CGEO_1077 arsB; arsenical pump membrane protein K03893 arsB; arsenical pump membrane protein
D CGEO_1790 C4-dicarboxylate transporter, DcuC family K03326 TC.DCUC; C4-dicarboxylate transporter, DcuC family
D CGEO_1014 murJ; lipid II flippase K03980 murJ; putative peptidoglycan lipid II flippase
D CGEO_0875 putative permease K24180 mleP; malate permease and related proteins
D CGEO_1636 putative permease K24180 mleP; malate permease and related proteins
D CGEO_0536 transporter, LysE family K06895 lysE; L-lysine exporter family protein LysE/ArgO
D CGEO_1081 transporter, LysE family K06895 lysE; L-lysine exporter family protein LysE/ArgO
D CGEO_0783 transporter, LysE family K05834 rhtB; homoserine/homoserine lactone efflux protein
D CGEO_0780 branched-chain amino acid transport protein, AzlC family K26605 azlC; branched chain amino acid efflux pump
D CGEO_0781 ribosome-associated heat shock protein (S4 domain) K26606 azlD; branched chain amino acid efflux pump
D CGEO_0455 MarC family membrane protein K05595 marC; multiple antibiotic resistance protein
D CGEO_0937 ftsW; cell division protein, FtsW/RodA/SpoVE family K03588 ftsW; cell division protein FtsW
D CGEO_0144 manganese efflux pump MntP K23242 mntP; manganese efflux pump family protein
D CGEO_1661 ferrirhodotorulic acid ABC transporter, inner membrane protein K07243 FTR; high-affinity iron transporter
D CGEO_1662 p19; ferrirhodotorulic acid ABC transporter, periplasmic binding protein K07230 p19; periplasmic iron binding protein
D CGEO_0541 metal ion ABC transporter, permease protein K08970 rcnA; nickel/cobalt transporter (NicO) family protein
D CGEO_0188 tonB1; energy transduction protein TonB K03832 tonB; periplasmic protein TonB
D CGEO_0330 tonB2; energy transduction protein TonB K03832 tonB; periplasmic protein TonB
D CGEO_0370 tolA; Tol-Pal system subunit TolA K03832 tonB; periplasmic protein TonB
D CGEO_0372 pal; Tol-Pal system peptidoglycan-associated lipoprotein K03640 pal; peptidoglycan-associated lipoprotein
D CGEO_0371 tolB; Tol-Pal system translocation protein TolB K03641 tolB; TolB protein
D CGEO_1091 molybdopterin-dependent oxidoreductase, cytochrome b subunit K08350 fdnI; formate dehydrogenase-N, gamma subunit
D CGEO_1854 dmsA; anaerobic DMSO reductase DmsABC, chain A K07309 ynfE; Tat-targeted selenate reductase subunit YnfE [EC:1.97.1.9]
D CGEO_1855 dmsB; anaerobic DMSO reductase DmsABC, chain B, iron-sulfur subunit K07307 dmsB; anaerobic dimethyl sulfoxide reductase subunit B
D CGEO_0339 molybdopterin-containing oxidoreductase II, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CGEO_1037 molybdopterin-containing oxidoreductase I, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CGEO_1309 molybdopterin-containing oxidoreductase I, DMSO/TMAO/BSO reductase family, catalytic subunit K07812 torZ; trimethylamine-N-oxide reductase (cytochrome c) [EC:1.7.2.3]
D CGEO_1111 putative thiosulfate/polysulfide reductase, molybdenum-binding subunit K08352 phsA; thiosulfate reductase / polysulfide reductase chain A [EC:1.8.5.5]
D CGEO_1110 putative thiosulfate/polysulfide reductase, [4Fe-4S] iron-sulfur binding domain-containing subunit K16293 psrB; polysulfide reductase chain B
D CGEO_1109 putative thiosulfate/polysulfide reductase, membrane-anchoring subunit K16294 psrC; polysulfide reductase chain C
D CGEO_0186 ttrD; tetrathionate reductase TtrDE, catalytic subunit D K08357 ttrA; tetrathionate reductase subunit A
D CGEO_0187 ttrE; tetrathionate reductase TtrDE, iron sulfur cluster-containing subunit E K08358 ttrB; tetrathionate reductase subunit B
D CGEO_1168 type I secretion system membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D
D CGEO_1183 type I secretion system membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D
D CGEO_0170 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CGEO_0876 macA; macrolide-specific efflux protein, membrane fusion protein MacA K13888 macA; membrane fusion protein, macrolide-specific efflux system
D CGEO_1668 feoA; ferrous iron transport protein A K04758 feoA; ferrous iron transport protein A
D CGEO_1669 feoB; ferrous iron transport protein B K04759 feoB; ferrous iron transport protein B
D CGEO_1883 long-chain fatty acid ABC transporter, fused permease and ATPase components, SbmA family K17938 sbmA; peptide/bleomycin uptake transporter
C 02044 Secretion system [BR:cgeo02044]
D CGEO_1170 type I secretion system ABC transporter, HlyB family K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D CGEO_1185 type I secretion system ABC transporter, HlyB family K11004 hlyB; ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
D CGEO_1168 type I secretion system membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D
D CGEO_1183 type I secretion system membrane fusion protein, HlyD family K11003 hlyD; membrane fusion protein, hemolysin D
D CGEO_0929 ctsD; transformation system protein CtsD K02453 gspD; general secretion pathway protein D
D CGEO_0934 ctsF; transformation system, membrane protein CtsF K02455 gspF; general secretion pathway protein F
D CGEO_1372 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CGEO_1373 putative type II secretion system protein K02456 gspG; general secretion pathway protein G
D CGEO_1464 hypothetical protein K02456 gspG; general secretion pathway protein G
D CGEO_1485 type II secretion/transformation system, G protein K02456 gspG; general secretion pathway protein G
D CGEO_0859 peptidase A24 N-terminal domain-containing protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
D CGEO_0289 type II/IV secretion system protein, PilT/PilU family K02669 pilT; twitching motility protein PilT
D CGEO_1604 type II/IV secretion system protein, PilT/PilU family K02669 pilT; twitching motility protein PilT
D CGEO_1366 YggT family membrane protein K02221 yggT; YggT family protein
D CGEO_1078 competence protein, ComEA family K02237 comEA; competence protein ComEA
D CGEO_1418 competence protein, ComEA family K02237 comEA; competence protein ComEA
D CGEO_1323 competence protein, ComEC family K02238 comEC; competence protein ComEC
D CGEO_0429 ctsW; transformation system, predicted amidophosphoribosyltransferase CtsW K02242 comFC; competence protein ComFC
D CGEO_1515 putative lytic transglycosylase K03194 virB1; type IV secretion system protein VirB1
D CGEO_1508 protein disulfide isomerase, DsbG family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CGEO_1803 protein disulfide isomerase, DsbG family K03981 dsbC; thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
D CGEO_1210 secA; preprotein translocase, SecA subunit K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8]
D CGEO_0659 secD; protein-export membrane protein SecD K03072 secD; preprotein translocase subunit SecD
D CGEO_0495 secE; preprotein translocase SecYEG, SecE subunit K03073 secE; preprotein translocase subunit SecE
D CGEO_0660 secF; protein-export membrane protein SecF K03074 secF; preprotein translocase subunit SecF
D CGEO_0021 secG; preprotein translocase SecYEG, SecG subunit K03075 secG; preprotein translocase subunit SecG
D CGEO_1929 secY; preprotein translocase SecYEG, SecY subunit K03076 secY; preprotein translocase subunit SecY
D CGEO_0607 ffh; signal recognition particle protein K03106 SRP54; signal recognition particle subunit SRP54 [EC:3.6.5.4]
D CGEO_1430 ftsY; cell division protein FtsY K03110 ftsY; fused signal recognition particle receptor
D CGEO_0658 yajC; preprotein translocase subunit YajC K03210 yajC; preprotein translocase subunit YajC
D CGEO_1256 oxaA; membrane protein insertase, YidC/Oxa1 family K03217 yidC; YidC/Oxa1 family membrane protein insertase
D CGEO_0474 twin arginine translocation system, TatA/E family protein K03116 tatA; sec-independent protein translocase protein TatA
D CGEO_0701 tatB; twin arginine translocation system, TatB protein K03117 tatB; sec-independent protein translocase protein TatB
D CGEO_0700 tatC; twin arginine translocation system, TatC protein K03118 tatC; sec-independent protein translocase protein TatC
C 02042 Bacterial toxins [BR:cgeo02042]
D CGEO_0913 cdtA; cytolethal distending toxin, subunit CdtA K11013 cdtA; cytolethal distending toxin subunit A
D CGEO_0914 cdtB; cytolethal distending toxin, subunit CdtB K11014 cdtB; cytolethal distending toxin subunit B
D CGEO_0915 cdtC; cytolethal distending toxin, subunit CdtC K11015 cdtC; cytolethal distending toxin subunit C
D CGEO_1871 HlyC/CorC family transporter K03699 tlyC; magnesium and cobalt exporter, CNNM family
C 02022 Two-component system [BR:cgeo02022]
D CGEO_1285 two-component system response regulator K07658 phoB1; two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP
D CGEO_1089 two-component system response regulator K11329 rpaB; two-component system, OmpR family, response regulator RpaB
D CGEO_0975 two-component system response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CGEO_0316 cosS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_0561 racS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_0803 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_1088 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_1107 two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_1163 cprS; two-component system sensor histidine kinase K02484 K02484; two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
D CGEO_0315 cosR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CGEO_0562 racR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CGEO_1162 cprR; two-component system response regulator K02483 K02483; two-component system, OmpR family, response regulator
D CGEO_0039 two-component system sensor histidine kinase K13532 kinD; two-component system, sporulation sensor kinase D [EC:2.7.13.3]
D CGEO_0976 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D CGEO_1799 two-component system sensor histidine kinase K10125 dctB; two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
D CGEO_1483 two-component system sensor histidine kinase K02482 flgS; two-component system, NtrC family, sensor kinase [EC:2.7.13.3]
D CGEO_0565 NIT sensor-containing two component system histidine kinase/response regulator fusion protein K19691 NIK1; osomolarity two-component system, sensor histidine kinase NIK1 [EC:2.7.13.3]
C 02035 Bacterial motility proteins [BR:cgeo02035]
D CGEO_0765 OmpA domain-containing protein K02557 motB; chemotaxis protein MotB
D CGEO_0407 flhG; polar flagellar biogenesis regulatory protein FlhG K04562 flhG; flagellar biosynthesis protein FlhG
D CGEO_0289 type II/IV secretion system protein, PilT/PilU family K02669 pilT; twitching motility protein PilT
D CGEO_1604 type II/IV secretion system protein, PilT/PilU family K02669 pilT; twitching motility protein PilT
D CGEO_0859 peptidase A24 N-terminal domain-containing protein, putative prepilin signal peptidase K02654 pilD; leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-]
C 03037 Cilium and associated proteins
C 04812 Cytoskeleton proteins [BR:cgeo04812]
D CGEO_0256 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CGEO_1226 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CGEO_1225 ftsA; cell division protein FtsA K03590 ftsA; cell division protein FtsA
D CGEO_0359 parA; chromosome partitioning protein K03496 parA; chromosome partitioning protein
D CGEO_0360 parB; chromosome partitioning protein K03497 parB; ParB family transcriptional regulator, chromosome partitioning protein
C 04147 Exosome [BR:cgeo04147]
D CGEO_0947 htpG; chaperone protein HtpG K04079 HSP90A; molecular chaperone HtpG
D CGEO_1860 eno; enolase K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11]
D CGEO_1593 gapA; glyceraldehyde 3-phosphate dehydrogenase A K00134 GAPDH; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
D CGEO_1592 pgk; phosphoglycerate kinase K00927 PGK; phosphoglycerate kinase [EC:2.7.2.3]
D CGEO_0558 pykF; pyruvate kinase I K00873 PK; pyruvate kinase [EC:2.7.1.40]
D CGEO_0310 ahpC; alkyl hydroperoxide reductase protein, peroxidase component K03386 PRDX2_4; peroxiredoxin 2/4 [EC:1.11.1.24]
D CGEO_0834 putative flotillin family protein, SPFH superfamily K07192 FLOT; flotillin
D CGEO_1311 groEL; 60 kD chaperonin (cpn60) K04077 groEL; chaperonin GroEL [EC:5.6.1.7]
D CGEO_0738 dnaK; DnaK system heat shock chaperone K04043 dnaK; molecular chaperone DnaK
D CGEO_1434 pgi; phosphoglucose isomerase K01810 GPI; glucose-6-phosphate isomerase [EC:5.3.1.9]
D CGEO_0527 guaB; inosine-5'-monophosphate dehydrogenase K00088 IMPDH; IMP dehydrogenase [EC:1.1.1.205]
D CGEO_0492 tuf; translation elongation factor Tu K02358 tuf; elongation factor Tu
D CGEO_0588 histidine triad nucleotide-binding protein, Hint/PKCI branch K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
D CGEO_1393 adk; adenylate kinase K00939 adk; adenylate kinase [EC:2.7.4.3]
D CGEO_1351 apt; adenine phosphoribosyltransferase K00759 APRT; adenine phosphoribosyltransferase [EC:2.4.2.7]
D CGEO_0578 argH; argininosuccinate lyase K01755 argH; argininosuccinate lyase [EC:4.3.2.1]
D CGEO_0921 argG; argininosuccinate synthase K01940 argG; argininosuccinate synthase [EC:6.3.4.5]
D CGEO_1363 fbp; fructose-1,6-bisphosphatase I K03841 FBP; fructose-1,6-bisphosphatase I [EC:3.1.3.11]
D CGEO_0599 glnA; glutamine synthetase K01915 glnA; glutamine synthetase [EC:6.3.1.2]
D CGEO_0482 hemB; porphobilinogen synthase K01698 hemB; porphobilinogen synthase [EC:4.2.1.24]
D CGEO_0595 serA; alpha-ketoglutarate reductase / D-3-phosphoglycerate dehydrogenase K00058 serA; D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase [EC:1.1.1.95 1.1.1.399]
D CGEO_1237 purH; AICAR transformylase / IMP cyclohydrolase K00602 purH; phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]
D CGEO_1591 tpiA; triosephosphate isomerase K01803 TPI; triosephosphate isomerase (TIM) [EC:5.3.1.1]
D CGEO_0711 lipocalin domain-containing protein K03098 APOD; apolipoprotein D and lipocalin family protein
C 02048 Prokaryotic defense system [BR:cgeo02048]
D CGEO_0115 cas1b; CRISPR/Cas system-associated endonuclease Cas1 K15342 cas1; CRISP-associated protein Cas1
D CGEO_0652 cas1; CRISPR/Cas system-associated endonuclease Cas1, type I-B K15342 cas1; CRISP-associated protein Cas1
D CGEO_0058 cas2a; CRISPR/Cas system-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D CGEO_0116 cas2b; CRISPR/Cas system-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D CGEO_0653 cas2; CRISPR/Cas system-associated endoribonuclease Cas2 K09951 cas2; CRISPR-associated protein Cas2
D CGEO_0650 cas3; CRISPR/Cas system-associated endonuclease/helicase Cas3, type I-B K07012 cas3; CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
D CGEO_0651 cas4; CRISPR/Cas system-associated RecB-like nuclease Cas4, type I-B K07464 cas4; CRISPR-associated exonuclease Cas4 [EC:3.1.12.1]
D CGEO_0646 cas6; CRISPR/Cas system-associated RAMP protein Cas6 K19091 cas6; CRISPR-associated endoribonuclease Cas6 [EC:3.1.-.-]
D CGEO_0647 cas8b1; CRISPR/Cas system-associated protein Cas8, type I-B K19114 csh1; CRISPR-associated protein Csh1
D CGEO_0648 cas7b; CRISPR/Cas system-associated RAMP protein Cas7, type I-B K19115 csh2; CRISPR-associated protein Csh2
D CGEO_0649 cas5; CRISPR/Cas system-associated RAMP protein Cas5, type I-B K19116 cas5h; CRISPR-associated protein Cas5h
D CGEO_0051 csm3a; CRISPR/Cas system-associated RAMP protein, type III-D (Csm3 domain) K19134 csx10; CRISPR-associated protein Csx10
D CGEO_0114 cas9; CRISPR/Cas system-associated RNA-guided endonuclease Cas9 K09952 csn1; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
D CGEO_0117 csn2; CRISPR/Cas system-associated protein Csn2, type II-A K19137 csn2; CRISPR-associated protein Csn2
D CGEO_0342 hsdR; type I restriction/modification system, restriction subunit K01153 hsdR; type I restriction enzyme, R subunit [EC:3.1.21.3]
D CGEO_0344 hsdS; type I restriction/modification system, specificity subunit K01154 hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]
D CGEO_0345 hsdM; type I restriction/modification system, methylation subunit K03427 hsdM; type I restriction enzyme M protein [EC:2.1.1.72]
D CGEO_0077 type II adenine-specific DNA methyltransferase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CGEO_1287 type IIP restriction/modification system, adenine-specific DNA methyltransferase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CGEO_1336 type II restriction/modification system, adenine-specific DNA methyltransferase K07318 K07318; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CGEO_1554 type II cytosine-specific DNA methyltransferase K00558 DNMT1; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]
D CGEO_1231 type III restriction/modification system, restriction subunit K01156 res; type III restriction enzyme [EC:3.1.21.5]
D CGEO_1232 type III restriction/modification system, modification subunit K07316 mod; adenine-specific DNA-methyltransferase [EC:2.1.1.72]
D CGEO_0094 putative type IV methyl-directed restriction system, component McrB K07452 mcrB; 5-methylcytosine-specific restriction enzyme B [EC:3.1.21.-]
D CGEO_0423 toxin-antitoxin system, antitoxin component, RelB family K07473 dinJ; DNA-damage-inducible protein J
D CGEO_0424 toxin-antitoxin system, toxin component, Txe/YoeB family K19158 yoeB; toxin YoeB [EC:3.1.-.-]
D CGEO_1589 Fic domain-containing protein K07341 doc; death on curing protein
D CGEO_1226 ftsZ; cell division protein FtsZ K03531 ftsZ; cell division protein FtsZ
D CGEO_0256 mrdB; cell wall shape-determining protein K03569 mreB; rod shape-determining protein MreB and related proteins
D CGEO_1367 gltX1; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_1811 gltX2; glutamyl-tRNA synthetase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D CGEO_0175 iscS; cysteine desulfurase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C 04030 G protein-coupled receptors
C 04050 Cytokine receptors
C 04054 Pattern recognition receptors
C 03310 Nuclear receptors
C 04040 Ion channels
C 04031 GTP-binding proteins
C 04052 Cytokines and neuropeptides
C 04515 Cell adhesion molecules
C 04090 CD molecules
C 01504 Antimicrobial resistance genes [BR:cgeo01504]
D CGEO_1955 outer membrane porin, OprD family K18093 oprD; imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
D CGEO_0975 two-component system response regulator K18344 vanRB; two-component system, OmpR family, response regulator VanR
D CGEO_0170 cmeA; multidrug efflux system CmeABC, periplasmic fusion protein CmeA K03585 acrA; membrane fusion protein, multidrug efflux system
D CGEO_0171 cmeB; multidrug efflux system CmeABC, inner membrane drug transporter CmeB K18138 acrB; multidrug efflux pump
D CGEO_0172 cmeC; multidrug efflux system CmeABC, outer membrane lipoprotein CmeC K18139 oprM; outer membrane protein, multidrug efflux system
C 00535 Proteoglycans
C 00536 Glycosaminoglycan binding proteins
C 00537 Glycosylphosphatidylinositol (GPI)-anchored proteins
C 04091 Lectins
C 04990 Domain-containing proteins not elsewhere classified
B
B 09185 Viral protein families
C 03200 Viral proteins
C 03210 Viral fusion proteins
B
B 09184 RNA family
C 03100 Non-coding RNAs [BR:cgeo03100]
D CGEO_1084 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CGEO_1739 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CGEO_1421 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CGEO_1963 tRNA-Ala K14218 tRNA-Ala; tRNA Ala
D CGEO_0195 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CGEO_0196 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CGEO_0509 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CGEO_0895 tRNA-Arg K14219 tRNA-Arg; tRNA Arg
D CGEO_0449 tRNA-Asn K14220 tRNA-Asn; tRNA Asn
D CGEO_1513 tRNA-Asp K14221 tRNA-Asp; tRNA Asp
D CGEO_1960 tRNA-Cys K14222 tRNA-Cys; tRNA Cys
D CGEO_0735 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CGEO_1041 tRNA-Gln K14223 tRNA-Gln; tRNA Gln
D CGEO_0156 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CGEO_1152 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CGEO_1511 tRNA-Glu K14224 tRNA-Glu; tRNA Glu
D CGEO_0987 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CGEO_1962 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CGEO_0490 tRNA-Gly K14225 tRNA-Gly; tRNA Gly
D CGEO_0197 tRNA-His K14226 tRNA-His; tRNA His
D CGEO_1085 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CGEO_1422 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CGEO_1740 tRNA-Ile K14227 tRNA-Ile; tRNA Ile
D CGEO_0194 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CGEO_0586 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CGEO_0891 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CGEO_1961 tRNA-Leu K14228 tRNA-Leu; tRNA Leu
D CGEO_1153 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CGEO_1512 tRNA-Lys K14229 tRNA-Lys; tRNA Lys
D CGEO_1486 tRNA-Met K14230 tRNA-Met; tRNA Met
D CGEO_0101 tRNA-Met K14230 tRNA-Met; tRNA Met
D CGEO_1042 tRNA-Met K14230 tRNA-Met; tRNA Met
D CGEO_1643 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CGEO_0028 tRNA-Phe K14231 tRNA-Phe; tRNA Phe
D CGEO_0198 tRNA-Pro K14232 tRNA-Pro; tRNA Pro
D CGEO_1958 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CGEO_1543 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CGEO_1911 tRNA-Ser K14233 tRNA-Ser; tRNA Ser
D CGEO_0491 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CGEO_0488 tRNA-Thr K14234 tRNA-Thr; tRNA Thr
D CGEO_0494 tRNA-Trp K14235 tRNA-Trp; tRNA Trp
D CGEO_0489 tRNA-Tyr K14236 tRNA-Tyr; tRNA Tyr
D CGEO_0135 tRNA-Val K14237 tRNA-Val; tRNA Val
D CGEO_1514 tRNA-Val K14237 tRNA-Val; tRNA Val
D CGEO_1086 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1423 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1741 16S ribosomal RNA K01977 16SrRNA; 16S ribosomal RNA
D CGEO_1080 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CGEO_1738 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CGEO_1420 23S ribosomal RNA K01980 23SrRNA; 23S ribosomal RNA
D CGEO_1079 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CGEO_1419 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CGEO_1737 5S ribosomal RNA K01985 5SrRNA; 5S ribosomal RNA
D CGEO_0007 srpB; bacterial signal recognition particle RNA (4.5S RNA) K01983 ffs; SRP RNA
D CGEO_1139 rnpB; ribonuclease P, RNA component K01978 rnpB; M1 RNA
D CGEO_1115 ssrA; 10Sa RNA K15035 ssrA; transfer-messenger RNA
#
A09190 Not Included in Pathway or Brite
B
B 09191 Unclassified: metabolism
C 99980 Enzymes with EC numbers
D CGEO_0838 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit K00179 iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
D CGEO_0837 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit K00180 iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
D CGEO_1587 old yellow enzyme (OYE)-related FMN binding domain-containing protein K00354 E1.6.99.1; NADPH2 dehydrogenase [EC:1.6.99.1]
D CGEO_0046 flavodoxin-like fold domain-containing protein, putative NAD(P)H (quinone) dehydrogenase/reductase K01118 acpD; FMN-dependent NADH-azoreductase [EC:1.7.1.17]
D CGEO_1395 cytochrome c K19713 tsdA; thiosulfate dehydrogenase [EC:1.8.2.2]
D CGEO_1233 msrAB; bifunctional (RS)-methionine sulfoxide reductase A/B K12267 msrAB; peptide methionine sulfoxide reductase msrA/msrB [EC:1.8.4.11 1.8.4.12]
D CGEO_0733 yedY; periplasmic DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit K07147 msrP; methionine sulfoxide reductase catalytic subunit [EC:1.8.-.-]
D CGEO_0341 ccpA1; periplasmic diheme cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D CGEO_0350 ccpA2; periplasmic diheme cytochrome c peroxidase K00428 E1.11.1.5; cytochrome c peroxidase [EC:1.11.1.5]
D CGEO_0249 bcp; thiol peroxidase K03564 BCP; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CGEO_0017 tpx; lipid hydroperoxide peroxidase K11065 tpx; thioredoxin-dependent peroxiredoxin [EC:1.11.1.24]
D CGEO_0703 Dyp-type peroxidase family protein K07223 yfeX; porphyrinogen peroxidase [EC:1.11.1.-]
D CGEO_0955 hydB; [Ni-Fe] hydrogenase, large subunit K05922 hydB; quinone-reactive Ni/Fe-hydrogenase large subunit [EC:1.12.5.1]
D CGEO_0954 hydA; [Ni-Fe] hydrogenase, small subunit K05927 hydA; quinone-reactive Ni/Fe-hydrogenase small subunit [EC:1.12.5.1]
D CGEO_0118 pirin family protein K06911 PIR; quercetin 2,3-dioxygenase [EC:1.13.11.24]
D CGEO_0087 nrdG; anaerobic ribonucleoside triphosphate reductase activating protein K04069 pflA; pyruvate formate lyase activating enzyme [EC:1.97.1.4]
D CGEO_1660 hyfA1; hydrogenase-4, iron-sulfur protein K12136 hyfA; hydrogenase-4 component A [EC:1.-.-.-]
D CGEO_1659 hyfB1; hydrogenase-4, transmembrane adaptor K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D CGEO_1880 hyfB2; hydrogenase-4, transmembrane adaptor K12137 hyfB; hydrogenase-4 component B [EC:1.-.-.-]
D CGEO_1879 hyfC2; hydrogenase-4, transmembrane adaptor K12138 hyfC; hydrogenase-4 component C [EC:1.-.-.-]
D CGEO_1657 hyfE1; hydrogenase-4, antiporter-like subunit K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D CGEO_1878 hyfE2; hydrogenase-4, antiporter-like subunit K12140 hyfE; hydrogenase-4 component E [EC:1.-.-.-]
D CGEO_1656 hyfF1; hydrogenase-4, antiporter-like subunit K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D CGEO_1877 hyfF2; hydrogenase-4, antiporter-like subunit K12141 hyfF; hydrogenase-4 component F [EC:1.-.-.-]
D CGEO_1652 hycH1; formate hydrogenlyase family maturation protein K12145 hyfJ; hydrogenase-4 component J [EC:1.-.-.-]
D CGEO_1873 hycH2; formate hydrogenlyase family maturation protein K12145 hyfJ; hydrogenase-4 component J [EC:1.-.-.-]
D CGEO_0093 pcm; L-isoaspartate protein carboxylmethyltransferase, type II K00573 E2.1.1.77; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77]
D CGEO_1817 putative coproporphyrinogen III oxidase K21936 chuW; anaerobilin synthase [EC:2.1.1.342]
D CGEO_0161 hemN1; oxygen-independent coproporphyrinogen III oxidase K23078 mqnK; menaquinone C8-methyltransferase [EC:2.1.1.350]
D CGEO_0657 lnt; apolipoprotein N-acyltransferase K03820 lnt; apolipoprotein N-acyltransferase [EC:2.3.1.269]
D CGEO_0629 aat; leucyl, phenylalanyl-tRNA-protein transferase K00684 aat; leucyl/phenylalanyl-tRNA---protein transferase [EC:2.3.2.6]
D CGEO_0898 ate; arginyltransferase K21420 bpt; leucyl-tRNA---protein transferase [EC:2.3.2.29]
D CGEO_0905 glycosyltransferase, family 4 K00754 bshA; L-malate glycosyltransferase [EC:2.4.1.-]
D CGEO_0867 modD; quinolinate phosphoribosyltransferase-like protein K03813 modD; molybdenum transport protein [EC:2.4.2.-]
D CGEO_1574 pglB; undecaprenyl-diphosphooligosaccharide--protein glycotransferase K17251 pglB; undecaprenyl-diphosphooligosaccharide---protein glycotransferase [EC:2.4.99.19]
D CGEO_0099 NCAIR mutase (PurE)-related protein K06898 larB; pyridinium-3,5-biscarboxylic acid mononucleotide synthase [EC:2.5.1.143]
D CGEO_1125 lgt; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase K13292 lgt; phosphatidylglycerol---prolipoprotein diacylglyceryl transferase [EC:2.5.1.145]
D CGEO_1243 lipoteichoic acid synthase-like protein K01002 mdoB; phosphoglycerol transferase [EC:2.7.8.20]
D CGEO_1866 phosphoglycerol transferase K01002 mdoB; phosphoglycerol transferase [EC:2.7.8.20]
D CGEO_1870 phosphoglycerol transferase K01002 mdoB; phosphoglycerol transferase [EC:2.7.8.20]
D CGEO_1572 pglC; N,N'-diacetylbacilliosaminyl-1-phosphate transferase K15915 pglC; undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase [EC:2.7.8.36]
D CGEO_0082 astA1; arylsulfate sulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D CGEO_0083 astA2; arylsulfate sulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D CGEO_1484 astA3; arylsulfate sulfotransferase K01023 assT; arylsulfate sulfotransferase [EC:2.8.2.22]
D CGEO_1261 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CGEO_1523 acyl-CoA thioesterase K07107 ybgC; acyl-CoA thioester hydrolase [EC:3.1.2.-]
D CGEO_0981 sixA; phosphohistidine phosphatase K08296 sixA; phosphohistidine phosphatase [EC:3.1.3.-]
D CGEO_1389 tatD; ssDNA/RNA exonuclease, 3' - 5' specific K03424 tatD; TatD DNase family protein [EC:3.1.21.-]
D CGEO_0179 def; peptide deformylase K01462 PDF; peptide deformylase [EC:3.5.1.88]
D CGEO_0538 reactive intermediate/imine deaminase K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CGEO_1518 cfiP; flagella modification protein K09022 ridA; 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10]
D CGEO_0614 MoxR-like ATPase K03924 moxR; MoxR-like ATPase [EC:3.6.3.-]
D CGEO_0181 carbohydrate kinase, YjeF-related protein K23997 nnr; ADP-dependent NAD(P)H-hydrate dehydratase / NAD(P)H-hydrate epimerase [EC:4.2.1.136 5.1.99.6]
D CGEO_0873 ppiB2; peptidyl-prolyl cis-trans isomerase B K01802 E5.2.1.8; peptidylprolyl isomerase [EC:5.2.1.8]
D CGEO_1585 lig; DNA ligase K26441 lig; DNA ligase [EC:6.5.1.1]
D CGEO_0843 copA; copper-translocating P-type ATPase K01533 copB; P-type Cu2+ transporter [EC:7.2.2.9]
C 99981 Carbohydrate metabolism
D CGEO_1358 lldE; NAD-independent L-lactate dehydrogenase LldEFG, oxidoreductase subunit K18928 lldE; L-lactate dehydrogenase complex protein LldE
D CGEO_1357 lldF; NAD-independent L-lactate dehydrogenase LldEFG, iron-sulfur cluster subunit K18929 lldF; L-lactate dehydrogenase complex protein LldF
D CGEO_1356 lldG; NAD-independent L-lactate dehydrogenase LldEFG, subunit LldG K00782 lldG; L-lactate dehydrogenase complex protein LldG
C 99982 Energy metabolism
D CGEO_1756 fdhD; formate dehydrogenase accessory protein K02379 fdhD; FdhD protein
D CGEO_1875 hyfH2; hydrogenase-4, iron-sulfur protein K12143 hyfH; hydrogenase-4 component H
D CGEO_0174 iscU; [Fe-S] cluster assembly scaffold protein K13819 K13819; NifU-like protein
D CGEO_1658 hyfC1; hydrogenase-4, transmembrane adaptor K15829 hycD; formate hydrogenlyase subunit 4
D CGEO_1655 hyfG1; hydrogenase-4, hydrogenase large subunit K15830 hycE; formate hydrogenlyase subunit 5
D CGEO_1876 hyfG2; hydrogenase-4, hydrogenase large subunit K15830 hycE; formate hydrogenlyase subunit 5
D CGEO_1654 hyfH1; hydrogenase-4, iron-sulfur protein K15831 hycF; formate hydrogenlyase subunit 6
D CGEO_1653 hyfI1; hydrogenase-4, hydrogenase small subunit K15832 hycG; formate hydrogenlyase subunit 7
D CGEO_1874 hyfI2; hydrogenase-4, hydrogenase small subunit K15832 hycG; formate hydrogenlyase subunit 7
D CGEO_1473 napD; periplasmic nitrate reductase assembly protein K02570 napD; periplasmic nitrate reductase NapD
D CGEO_1475 napF; ferredoxin-type protein K02572 napF; ferredoxin-type protein NapF
D CGEO_1026 flavodoxin K03839 fldA; flavodoxin I
D CGEO_1692 fldA; flavodoxin K03839 fldA; flavodoxin I
D CGEO_1058 NapC/NirT cytochrome c family protein K02569 napC; cytochrome c-type protein NapC
D CGEO_1478 napG; menaquinol dehydrogenase NapGH, periplasmic component NapG K02573 napG; ferredoxin-type protein NapG
D CGEO_1898 nosG; menaquinol dehydrogenase NosGH, periplasmic component NosG K02573 napG; ferredoxin-type protein NapG
D CGEO_1477 napH; menaquinol dehydrogenase NapGH, membrane component NapH K02574 napH; ferredoxin-type protein NapH
D CGEO_1895 nosH; menaquinol dehydrogenase NosGH, membrane component NosH K02574 napH; ferredoxin-type protein NapH
D CGEO_1230 NAD(P)/FAD-dependent oxidoreductase K21739 rclA; probable pyridine nucleotide-disulfide oxidoreductase
C 99983 Lipid metabolism
C 99984 Nucleotide metabolism
C 99985 Amino acid metabolism
D CGEO_1023 type III pyridoxal 5-phosphate (PLP)-dependent enzyme, YggS family K06997 yggS; PLP dependent protein
C 99986 Glycan metabolism
C 99987 Cofactor metabolism
D CGEO_1004 putative ubiquinone biosynthesis protein kinase K03688 ubiB; ubiquinone biosynthesis protein
D CGEO_1364 mobB; molybdenum cofactor guanylyltransferase protein B K03753 mobB; molybdopterin-guanine dinucleotide biosynthesis adapter protein
C 99988 Secondary metabolism
D CGEO_1274 NAD(P)H-dependent oxidoreductase K19784 chrR; chromate reductase, NAD(P)H dehydrogenase (quinone)
C 99999 Others
D CGEO_0503 DoxX family protein K15977 K15977; putative oxidoreductase
B
B 09192 Unclassified: genetic information processing
C 99973 Transcription
C 99974 Translation
C 99975 Protein processing
D CGEO_0644 clpS; ClpAP chaperone-protease complex specificity factor K06891 clpS; ATP-dependent Clp protease adaptor protein ClpS
D CGEO_0177 tig; trigger factor (peptidyl-prolyl cis/trans isomerase, chaperone) K03545 tig; trigger factor
D CGEO_0734 putative membrane protein K17247 msrQ; methionine sulfoxide reductase heme-binding subunit
D CGEO_0642 smpB; SsrA-binding protein K03664 smpB; SsrA-binding protein
D CGEO_0964 hypC; hydrogenase assembly chaperone HypC K04653 hypC; hydrogenase expression/formation protein HypC
D CGEO_0966 hypD; hydrogenase expression/formation protein HypD K04654 hypD; hydrogenase expression/formation protein HypD
D CGEO_0968 hypE; hydrogenase expression/formation protein HypE K04655 hypE; hydrogenase expression/formation protein HypE
D CGEO_0959 hypF; [Ni-Fe] hydrogenase maturation protein HypF K04656 hypF; hydrogenase maturation protein HypF
D CGEO_0180 magnesium chelatase-related protein K07391 comM; magnesium chelatase family protein
D CGEO_1506 selT/selW/selH selenoprotein K07401 K07401; selenoprotein W-related protein
C 99976 Replication and repair
D CGEO_1220 rmuC; DNA recombination protein K09760 rmuC; DNA recombination protein RmuC
D CGEO_0669 magIII; 3-methyladenine DNA glycosylase K07457 K07457; endonuclease III related protein
D CGEO_0235 UPF0102 domain-containing protein K07460 yraN; putative endonuclease
D CGEO_0691 dprA; DNA protecting protein DprA K04096 smf; DNA processing protein
D CGEO_0119 rarA; recombination factor protein RarA K07478 ycaJ; putative ATPase
D CGEO_1586 wlaX; putative polysaccharide biosynthesis protein K07501 K07501; 3'-5' exonuclease
D CGEO_1868 site-specific tyrosine recombinase, phage integrase family (INT_ICEBs1_C_like domain) K14059 int; integrase
C 99979 Viral proteins
C 99998 Others
D CGEO_1914 YbaB/EbfC DNA-binding family protein K09747 ebfC; nucleoid-associated protein EbfC
B
B 09193 Unclassified: signaling and cellular processes
C 99977 Transport
D CGEO_0202 inorganic phosphate transporter, PitA family K03306 TC.PIT; inorganic phosphate transporter, PiT family
D CGEO_1488 sodium:proline symporter K03307 TC.SSS; solute:Na+ symporter, SSS family
D CGEO_0340 sodium-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CGEO_0348 sodium-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CGEO_1138 sodium-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CGEO_1595 sodium-dependent transporter, SNF family K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family
D CGEO_1556 brnQ; branched-chain amino acid transport system II carrier protein K03311 TC.LIVCS; branched-chain amino acid:cation transporter, LIVCS family
D CGEO_1767 bile acid:sodium symporter family protein K03453 TC.BASS; bile acid:Na+ symporter, BASS family
D CGEO_0731 sodium:sulfate symporter family protein K03319 TC.DASS; divalent anion:Na+ symporter, DASS family
C 99978 Cell growth
D CGEO_1255 Jag domain-containing protein K06346 jag; spoIIIJ-associated protein
C 99993 Cell motility
D CGEO_1442 outer membrane lipoprotein, putative peptidoglycan-synthase activator LpoB K07337 K07337; penicillin-binding protein activator
C 99995 Signaling proteins
D CGEO_1749 TerD family protein K05795 terD; tellurium resistance protein TerD
D CGEO_1748 TerD family protein K05791 terZ; tellurium resistance protein TerZ
D CGEO_0434 cstA; carbon starvation protein A K06200 cstA; carbon starvation protein
D CGEO_0009 typA; GTP-binding protein TypA K06207 typA; GTP-binding protein
D CGEO_0162 putative YajQ-like nucleotide-binding protein (DUF520 domain) K09767 yajQ; cyclic-di-GMP-binding protein
C 99992 Structural proteins
D CGEO_1215 lolA; periplasmic outer membrane-specific lipoprotein chaperone K03634 lolA; outer membrane lipoprotein carrier protein
D CGEO_1722 mlaA; lipid asymmetry ABC transporter MlaABCDEF, lipoprotein MlaA K04754 mlaA; phospholipid-binding lipoprotein MlaA
D CGEO_0427 lipoprotein K07286 yajG; uncharacterized lipoprotein
D CGEO_0203 putative autoinducer 2 (AI-2E family) transporter K11744 tqsA; AI-2 transport protein TqsA
C 99994 Others
D CGEO_1746 membrane protein, TerC family K05794 terC; tellurite resistance protein TerC
D CGEO_0747 putative CutA divalent ion tolerance protein K03926 cutA; periplasmic divalent cation tolerance protein
D CGEO_1899 nosD; copper ABC transporter NosDFY, periplasmic copper-binding protein NosD K07218 nosD; nitrous oxidase accessory protein
D CGEO_1825 putative heme iron utilization protein, ChuX/HutX family K07227 chuX; heme iron utilization protein
D CGEO_1619 NosL domain-containing protein K19342 nosL; copper chaperone NosL
D CGEO_1891 nosL; nitrous oxide reductase accessory protein K19342 nosL; copper chaperone NosL
D CGEO_1893 hypothetical protein K19342 nosL; copper chaperone NosL
B
B 09194 Poorly characterized
C 99996 General function prediction only
D CGEO_1605 CvpA family membrane protein K03558 cvpA; membrane protein required for colicin V production
D CGEO_0443 Patatin-like phospholipase K07001 K07001; NTE family protein
D CGEO_1322 BrkB/YihY/UPF0761 family membrane protein, possible virulence factor K07058 K07058; membrane protein
D CGEO_0574 putative phosphoribosyltransferase K07100 K07100; putative phosphoribosyl transferase
D CGEO_0010 lemA; LemA protein K03744 lemA; LemA protein
D CGEO_0446 CreA family protein K05805 creA; CreA protein
D CGEO_1609 hypothetical protein K03749 dedD; DedD protein
D CGEO_1570 PhnA domain-containing protein K06193 phnA; protein PhnA
D CGEO_0276 DUF417 domain-containing membrane protein K21741 rclC; reactive chlorine resistance protein C
C 99997 Function unknown
D CGEO_0589 ankyrin domain-containing protein K06867 K06867; uncharacterized protein
D CGEO_0719 ankyrin domain-containing protein K06867 K06867; uncharacterized protein
D CGEO_0847 ankyrin domain-containing protein K06867 K06867; uncharacterized protein
D CGEO_1410 fibronectin type III domain-containing protein K06882 K06882; uncharacterized protein
D CGEO_1496 alpha/beta hydrolase family protein K06889 K06889; uncharacterized protein
D CGEO_0667 ATP-binding protein (AAA, DUF815 domains) K06923 K06923; uncharacterized protein
D CGEO_0850 CoA-binding domain-containing protein K06929 K06929; uncharacterized protein
D CGEO_1132 putative [Fe-S] cluster-containing protein K06940 K06940; uncharacterized protein
D CGEO_1264 YkgJ family cysteine cluster protein K06940 K06940; uncharacterized protein
D CGEO_0479 hypothetical protein K06950 K06950; uncharacterized protein
D CGEO_0609 putative RNA-binding protein (KH domain) K06960 K06960; uncharacterized protein
D CGEO_1720 RND superfamily transporter K07003 K07003; uncharacterized protein
D CGEO_0464 nitroimidazol reductase (NimA) family protein K07005 K07005; uncharacterized protein
D CGEO_0015 putative neutral zinc metallopeptidase K07054 K07054; uncharacterized protein
D CGEO_0030 nucleotidyltransferase domain-containing protein K07074 K07074; uncharacterized protein
D CGEO_1293 TRAP transporter, substrate binding protein, TAXI family K07080 K07080; uncharacterized protein
D CGEO_0942 arsP; arsenic resistance permease K07089 K07089; uncharacterized protein
D CGEO_0327 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D CGEO_0397 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D CGEO_0456 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D CGEO_0810 sulfite exporter TauE/SafE family protein K07090 K07090; uncharacterized protein
D CGEO_1297 phosphatase, PhoX family (DUF839 domain) K07093 K07093; uncharacterized protein
D CGEO_1834 metallophosphoesterase K07095 K07095; uncharacterized protein
D CGEO_0716 oligoribonuclease NrnB K07097 K07097; uncharacterized protein
D CGEO_1370 membrane-associated metallophosphoesterase (YkuE domain) K07098 K07098; uncharacterized protein
D CGEO_1559 transcriptional regulator, AbrB family K07120 K07120; uncharacterized protein
D CGEO_0546 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CGEO_1068 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CGEO_1116 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CGEO_1768 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CGEO_1787 Sel1 domain-containing protein K07126 K07126; uncharacterized protein
D CGEO_1830 hypothetical protein K07126 K07126; uncharacterized protein
D CGEO_1951 ATP-binding protein (AAA domain) K07133 K07133; uncharacterized protein
D CGEO_0604 zinc ribbon domain-containing protein (DUF164 domain) K07164 K07164; uncharacterized protein
D CGEO_1257 membrane protein insertion efficiency factor, YidD family K08998 K08998; uncharacterized protein
D CGEO_1066 intracellular sulfur oxidation protein, DsrE/DsrF family K09004 K09004; uncharacterized protein
D CGEO_0597 GatB/YqeY family protein K09117 K09117; uncharacterized protein
D CGEO_1082 ACT domain-containing protein K09707 K09707; uncharacterized protein
D CGEO_1713 sulfite exporter TauE/SafE family protein (DsbD_2 domain) K09792 K09792; uncharacterized protein
D CGEO_0678 DUF465 domain-containing protein K09794 K09794; uncharacterized protein
D CGEO_0692 divergent polysaccharide deacetylase K09798 K09798; uncharacterized protein
D CGEO_1954 DUF475 domain-containing membrane protein K09799 K09799; uncharacterized protein
D CGEO_1715 DUF507 domain-containing protein K09804 K09804; uncharacterized protein
D CGEO_1440 putative lipoprotein K09859 K09859; uncharacterized protein
D CGEO_0894 peroxide stress protein YaaA K09861 K09861; uncharacterized protein
D CGEO_0880 TrkA domain-containing protein K09944 K09944; uncharacterized protein
D CGEO_1889 DUF1508 domain-containing protein (tandem domains) K09946 K09946; uncharacterized protein
D CGEO_1690 YhbP domain-containing protein K09979 K09979; uncharacterized protein
D CGEO_1727 DUF2156 domain-containing protein K01163 K01163; uncharacterized protein
D CGEO_1252 mitochondrial fission domain-containing protein K07276 K07276; uncharacterized protein
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#[ KO | BRITE | KEGG2 | KEGG ]
#Last updated: September 22, 2024