+F Repair protein KO #

  DNA Repair and Recombination Proteins - Capnocytophaga haemolytica

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AEukaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E AXF12_06270 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AXF12_11370 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AXF12_08465 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases D Long Patch-BER factors E DNA polymerase delta complex E DNA polymerase epsilon complex D Short Patch-BER factors D Other BER factors C NER (nucleotide excision repair) D GGR (global genome repair) factors E XPC-HR23B-CETN2 complex E Cul4-DDB2 complex E NER4 complex D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase II complex E Cul4-CSA complex E Other TCR factor D TFIIH complex D RPA (replication factor A) D Other NER factors C MMR (mismatch excision repair) D Mismatch and loop recognition factors D MutL homologs D DNA polymerase delta complex D RPA (replication factor A) D RFC (replication factor C) D Other MMR factors B DSBR (double strand breaks repair) C HR (homologous recombination) D MRN(MRX) complex D BRCA1-core complex D BRCA1-A complex D BRCA1-B complex D BRCA1-C complex D BRCA complex D RecA family proteins D Rad52 family proteins D Rad54 family proteins D RecQ family DNA helicases D Bloom's syndrome complex (BTR) D RPA (replication factor A) D Protein phosphatase 4 D AP-5 complex D SMC5-SMC6 complex D Other HR factors C NHEJ (non-homologous end-joining) D DNA-PK complex D MRX complex D DNA Ligase 4 complex D X-family DNA polymerases D Other NHEJ factors C FA (Fanconi anemia) pathway D FA core complex D FA core complex binding factors D Bloom's syndrome complex (BTR) D FANCD2-I complex D Downstream FA components D Other FA pathway factors C Other DSBR factors D Protein phosphatase 6 D Ubiquitin ligases D Others B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases C B-family DNA polymerases C A-family DNA polymerase C Rad6 epistasis group C Other TLS factors B Check point factors C Rad9-Hus1-Rad1 complex C HRAD17(Rad24)-RFC complex C Rad17-Mec3-Ddc1 complex C FPC (fork protection complex) C Triple T complex C BAG6-UBL4A-GET4 complex C Other check point factors B Other factors with a suspected DNA repair function C DNA polymerases C Nucleases C Helicases C PSO4 complex C Modulation of nucleotide pools D AXF12_01055 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] # AProkaryotic type B SSBR (single strand breaks repair) C Direct repair C BER (base exicision repair) D DNA glycosylases E AXF12_06270 uracil-DNA glycosylase K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] E AXF12_11370 A/G-specific adenine glycosylase K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] E AXF12_08465 endonuclease III K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] D AP endonucleases E AXF12_04075 exodeoxyribonuclease III K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] D RecJ E AXF12_10045 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] D DNA ligase E AXF12_11105 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D DNA polymerase I E AXF12_00655 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] C NER (nucleotide excision repair) D GGR (global genome repair) factors E AXF12_10335 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A E AXF12_09105 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A E AXF12_10055 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B E AXF12_00965 excinuclease ABC subunit C K03703 uvrC; excinuclease ABC subunit C E AXF12_08845 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AXF12_00655 DNA polymerase I K02335 polA; DNA polymerase I [EC:2.7.7.7] E AXF12_11105 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D TCR (transcription coupled repair) factors E DNA-directed RNA polymerase complex (RNAP) F AXF12_03365 rpoB; DNA-directed RNA polymerase subunit beta K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] F AXF12_03395 DNA-directed RNA polymerase subunit beta' K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] F AXF12_11410 DNA-directed RNA polymerase subunit alpha K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] E TRCF (transcription-repair coupling factor) F AXF12_08625 transcription-repair coupling factor K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] C MMR (mismatch excision repair) D Mismatch and loop recognition factors E AXF12_00510 DNA mismatch repair protein MutS K03555 mutS; DNA mismatch repair protein MutS E AXF12_08115 DNA mismatch repair protein MutS K07456 mutS2; DNA mismatch repair protein MutS2 D Molecular matchmaker E AXF12_06175 DNA mismatch repair protein MutL K03572 mutL; DNA mismatch repair protein MutL D Strand discrimination factor D DNA exonucleases D DNA polymerase III holoenzyme E AXF12_03665 DNA polymerase III subunit alpha K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] E AXF12_05405 DNA polymerase III subunit beta K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] E AXF12_04245 DNA polymerase III subunit delta K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] E AXF12_10095 DNA polymerase III subunit delta' K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] E AXF12_08350 exonuclease K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AXF12_08890 DNA polymerase III subunit epsilon K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] E AXF12_08560 DNA polymerase III subunit gamma/tau K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] D DNA ligase E AXF12_11105 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] D Other MMR factors E AXF12_08845 ATP-dependent DNA helicase K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] E AXF12_11365 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein E AXF12_02505 hypothetical protein K03111 ssb; single-strand DNA-binding protein E AXF12_05920 hypothetical protein K03111 ssb; single-strand DNA-binding protein B DSBR (double strand breaks repair) C HR (homologous recombination) D RecBC pathway proteins E AXF12_01855 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E AXF12_02595 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AXF12_09975 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AXF12_08335 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] E AXF12_05610 primosomal protein N' K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] E AXF12_03070 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AXF12_02370 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 D RecFOR pathway proteins E AXF12_01855 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA E AXF12_02425 DNA repair protein RadA K04485 radA; DNA repair protein RadA/Sms E AXF12_00240 DNA recombination protein RecF K03629 recF; DNA replication and repair protein RecF E AXF12_07655 ATP-dependent DNA helicase RecG K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] E AXF12_10045 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] E AXF12_08450 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) E AXF12_11090 recombination protein RecR K06187 recR; recombination protein RecR E AXF12_06780 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) E AXF12_02595 Holliday junction ATP-dependent DNA helicase RuvA K03550 ruvA; holliday junction DNA helicase RuvA E AXF12_09975 ATP-dependent DNA helicase RuvB K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] E AXF12_08335 crossover junction endodeoxyribonuclease RuvC K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] D AddAB pathway proteins D Other HR factor D Archaeal homologous recombinant proteins E AXF12_03070 hypothetical protein K03546 sbcC; DNA repair protein SbcC/Rad50 E AXF12_02370 exonuclease sbcCD subunit D K03547 sbcD; DNA repair protein SbcD/Mre11 E AXF12_06840 ATPase K06915 herA; DNA double-strand break repair helicase HerA and related ATPase C NHEJ (non-homologous end-joining) D Two-component NHEJ DNA repair complex D SHIIR (short-homology-independent illegitimate recombination) E Facilitator F AXF12_08505 DNA gyrase subunit A K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] F AXF12_00140 gyrB; DNA topoisomerase IV subunit B K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] F AXF12_03185 DNA topoisomerase I K03168 topA; DNA topoisomerase I [EC:5.6.2.1] E Supressor F AXF12_08700 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta F AXF12_04155 DNA-binding protein K03530 hupB; DNA-binding protein HU-beta D SHDIR (short-homology-dependent illegitimate recombination) E RecET pathway F AXF12_10045 single-stranded-DNA-specific exonuclease RecJ K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-] F AXF12_08450 DNA repair protein RecO K03584 recO; DNA repair protein RecO (recombination protein O) F AXF12_11090 recombination protein RecR K06187 recR; recombination protein RecR F AXF12_11105 DNA ligase (NAD(+)) LigA K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] E Facilitator E Supressor F AXF12_08400 ATP-dependent DNA helicase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AXF12_10485 recombinase RecQ K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] F AXF12_10335 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A F AXF12_09105 ABC-ATPase UvrA K03701 uvrA; excinuclease ABC subunit A F AXF12_10055 excinuclease ABC subunit B K03702 uvrB; excinuclease ABC subunit B B TLS (translesion DNA synthesis) factors C Y-family DNA polymerases D AXF12_10180 DNA polymerase IV K02346 dinB; DNA polymerase IV [EC:2.7.7.7] C Other SOS response factors D AXF12_01855 DNA recombination/repair protein RecA K03553 recA; recombination protein RecA D AXF12_06780 DNA repair protein RecN K03631 recN; DNA repair protein RecN (Recombination protein N) D AXF12_11365 single-stranded DNA-binding protein K03111 ssb; single-strand DNA-binding protein D AXF12_02505 hypothetical protein K03111 ssb; single-strand DNA-binding protein D AXF12_05920 hypothetical protein K03111 ssb; single-strand DNA-binding protein D AXF12_00460 recombinase RecX K03565 recX; regulatory protein B Other factors with a suspected DNA repair function C DNA polymerase C DNA helicases C Modulation of nucleotide pools D AXF12_01055 deoxyuridine 5'-triphosphate nucleotidohydrolase K01520 dut; dUTP diphosphatase [EC:3.6.1.23] D AXF12_08075 ribonucleotide-diphosphate reductase subunit alpha K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] D AXF12_11675 ribonucleotide reductase K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] C Others D AXF12_09330 exopolyphosphatase K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3] ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: March 29, 2024