+E Ribosome biogenesis KO
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Ribosome Biogenesis - Chondrocystis sp. NIES-4102
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AEukaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B 90S particles
C U3 small nucleolar RNA-associated proteins
C Helicases
C GTPase
C RNase
D NIES4102_26210 rnc_2; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NIES4102_05450 rnc_1; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
D NIES4102_17490 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C Kinase
C Other 90S particles
B Pre-40S particles
C Kinases
C Export and cytoplasmic maturation factors
C Other pre-40S particles
B Pre-60S particles
C Helicases
C GTPases
C RNases
D RNase MRP
C Kinases
C Export and cytoplasmic maturation factors
C 5-FMC complex
C Ribosome quality control proteins
C Other pre-60S particles
B Other ribosome biogenesis factors
C NIES4102_27310 era; GTP-binding protein K03595 era; GTPase
C NIES4102_18170 small GTP-binding protein K03595 era; GTPase
C NIES4102_32620 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
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AProkaryotic type
B Sno RNPs
C Box C/D snoRNPs
C Box H/ACA snoRNPs
B rRNA transcription factors
C NIES4102_33570 nusA; transcription termination factor, N utilization substance protein K02600 nusA; transcription termination/antitermination protein NusA
C NIES4102_33060 N utilization substance protein B homolog K03625 nusB; transcription antitermination protein NusB
C NIES4102_15650 nusG; transcription antitermination protein K02601 nusG; transcription termination/antitermination protein NusG
B rRNA modification factors
C 16S rRNA modification factors
D NIES4102_03520 dimethyladenosine transferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
D NIES4102_34590 sun protein K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176]
D NIES4102_07940 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171]
D NIES4102_33980 hypothetical protein K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
D NIES4102_03200 glucose inhibited division protein B K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170]
D NIES4102_32070 S-adenosyl-methyltransferase MraW K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
D NIES4102_33710 hypothetical protein K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
D NIES4102_19860 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
C 23S rRNA modification factors
D NIES4102_22920 RNA methyltransferase, TrmH family, group 3 K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
D NIES4102_38470 putative N6-adenine-specific DNA methylase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173]
D NIES4102_29600 radical SAM enzyme, Cfr family protein K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
D NIES4102_19860 hemolysin A K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
D NIES4102_17380 RNA methyltransferase, TrmA family protein K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
D NIES4102_32600 ribosomal large subunit pseudouridine synthase D K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
D NIES4102_05040 ribosomal large subunit pseudouridine synthase E K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20]
B ribosomal protein modification factors
C NIES4102_21570 ribosomal-protein-alanine acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266]
C NIES4102_07140 alpha-L-glutamate ligase, RimK family protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
C NIES4102_27770 16S rRNA processing protein RimM K02860 rimM; 16S rRNA processing protein RimM
C NIES4102_33140 MiaB-like tRNA modifying enzyme YliG K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
C NIES4102_33240 ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-]
B rRNA processing factors
C NIES4102_26210 rnc_2; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C NIES4102_05450 rnc_1; ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C NIES4102_17490 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3]
C NIES4102_37020 rne; ribonuclease E K08300 rne; ribonuclease E [EC:3.1.26.12]
C NIES4102_10780 Holliday junction resolvase YqgF K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-]
C NIES4102_22930 ribonuclease III K11145 mrnC; mini-ribonuclease III [EC:3.1.26.-]
B rRNA helicases
C NIES4102_33130 deaD; ATP-dependent RNA helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
B GTPases
C NIES4102_27310 era; GTP-binding protein K03595 era; GTPase
C NIES4102_18170 small GTP-binding protein K03595 era; GTPase
C NIES4102_29180 ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100]
C NIES4102_36660 small GTP-binding protein K03977 engA; GTPase
C NIES4102_32620 GTP-binding protein Obg/CgtA K03979 obgE; GTPase [EC:3.6.5.-]
C NIES4102_15850 GTP-binding protein HSR1-related protein K14540 rbgA; ribosome biogenesis GTPase A
C NIES4102_37950 hflX; GTP-binding protein K03665 hflX; GTPase
B Other maturation factors
C NIES4102_04710 SUA5/yciO/yrdC domain protein K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
C NIES4102_30490 (p)ppGpp synthetase I, SpoT/RelA K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2]
C NIES4102_23930 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A
C NIES4102_33580 hypothetical protein K09748 rimP; ribosome maturation factor RimP
C NIES4102_06500 hypothetical protein K14761 rlbA; ribosome-associated protein
C NIES4102_14430 iojap-related protein K09710 ybeB; ribosome-associated protein
C NIES4102_27860 hypothetical protein K07042 ybeY; probable rRNA maturation factor
C NIES4102_09260 GTP-binding protein YchF K06942 ychF; ribosome-binding ATPase
C NIES4102_00470 hypothetical protein K07040 yceD; DUF177 domain-containing protein
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ARelated small nucleolar RNAs
B Box C/D snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for 2'-O-ribose methylation
B Box H/ACA snoRNAs
C SnoRNAs involved in processing reactions
C SnoRNAs act as guides for pseudouridynation
B Other snoRNA
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024