+D
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Transfer RNA Biogenesis - Caulobacter henricii
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AEukaryotic type
B 5'processing factors
C Ribonucrease P
B 3'processing and CCA adding factors
C 3'processing factors
D AQ619_05955 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D AQ619_00220 ribonuclease T K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonuclease complex
C tRNA splicing ligase complex
C Other tRNA splicing factors
B tRNA transport factors
C tRNA export factors
C tRNA import factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D AQ619_08700 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AQ619_08580 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
D AQ619_02690 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AQ619_17855 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AQ619_07455 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AQ619_01470 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AQ619_09215 aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
C Other AARSs
D AQ619_05090 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AQ619_02315 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AQ619_11300 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AQ619_02300 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AQ619_09430 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AQ619_00955 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AQ619_12360 phenylalanine--tRNA ligase subunit beta K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AQ619_12370 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AQ619_09110 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AQ619_00075 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
C Trans-editing factors
C AARS associated factors
D AQ619_10415 HIT family hydrolase K02503 HINT1_2; histidine triad (HIT) family protein [EC:3.9.1.-]
B tRNA modification factors
C Deaminases
C Dihydorouridine synthases
C Methylthiotransferase
C Methyltransferases
D AQ619_00145 tRNA (guanine-N7)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
C Psudouridine synthases
D AQ619_15940 pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D AQ619_00200 pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D AQ619_09090 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
C KEOPS/EKC complex
C Elongator complex
C Elongator related proteins
C Other tRNA modification factors
D AQ619_01340 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AQ619_11805 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D AQ619_17820 tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D AQ619_17825 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D AQ619_14850 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
B tRNA degradation factors
C TRAMP complex
C Rapid tRNA decay (RTD) pathway factors
D AQ619_00485 3'(2'),5'-bisphosphate nucleotidase CysQ K01082 cysQ; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]
C Other tRNA degradation factors
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AProkaryotic type
B 5'processing factors
C Ribonucrease P
D AQ619_18115 bacterial RNase P K01978 rnpB; M1 RNA
B 3'processing and CCA adding factors
C 3'processing factors
D AQ619_05955 ribonuclease Z K00784 rnz; ribonuclease Z [EC:3.1.26.11]
D AQ619_16375 ribonuclease PH K00989 rph; ribonuclease PH [EC:2.7.7.56]
D AQ619_08300 ribonuclease D K03684 rnd; ribonuclease D [EC:3.1.13.5]
D AQ619_17220 3'-5' exonuclease K03684 rnd; ribonuclease D [EC:3.1.13.5]
D AQ619_00220 ribonuclease T K01166 RNASET2; ribonuclease T2 [EC:4.6.1.19]
C CCA adding factors
B tRNA spricing factors
C tRNA splicing endonucleases
C tRNA splicing ligases
C Other tRNA splicing factors
D AQ619_17520 2'-5' RNA ligase K01975 thpR; RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
B tRNA transport factors
C tRNA export factors
B Aminoacyl-tRNA synthetases (AARSs)
C Multi-aminoacyl-tRNA synthetase complex (MSC)
D AQ619_17855 leucine--tRNA ligase K01869 LARS; leucyl-tRNA synthetase [EC:6.1.1.4]
D AQ619_16740 lysK; lysine--tRNA ligase K04566 lysK; lysyl-tRNA synthetase, class I [EC:6.1.1.6]
D AQ619_08580 proline--tRNA ligase K01881 PARS; prolyl-tRNA synthetase [EC:6.1.1.15]
C Other AARSs
D AQ619_09110 tyrosine--tRNA ligase K01866 YARS; tyrosyl-tRNA synthetase [EC:6.1.1.1]
D AQ619_00075 tryptophan--tRNA ligase K01867 WARS; tryptophanyl-tRNA synthetase [EC:6.1.1.2]
D AQ619_02315 threonine--tRNA ligase K01868 TARS; threonyl-tRNA synthetase [EC:6.1.1.3]
D AQ619_02690 ileS; isoleucine--tRNA ligase K01870 IARS; isoleucyl-tRNA synthetase [EC:6.1.1.5]
D AQ619_05090 alanine--tRNA ligase K01872 AARS; alanyl-tRNA synthetase [EC:6.1.1.7]
D AQ619_09430 valine--tRNA ligase K01873 VARS; valyl-tRNA synthetase [EC:6.1.1.9]
D AQ619_07455 methionine--tRNA ligase K01874 MARS; methionyl-tRNA synthetase [EC:6.1.1.10]
D AQ619_11300 serine--tRNA ligase K01875 SARS; seryl-tRNA synthetase [EC:6.1.1.11]
D AQ619_09215 aspartate--tRNA(Asp/Asn) ligase K01876 DARS2; aspartyl-tRNA synthetase [EC:6.1.1.12]
D AQ619_09285 glycine--tRNA ligase subunit alpha K01878 glyQ; glycyl-tRNA synthetase alpha chain [EC:6.1.1.14]
D AQ619_09280 glycine--tRNA ligase subunit beta K01879 glyS; glycyl-tRNA synthetase beta chain [EC:6.1.1.14]
D AQ619_02300 cysteine--tRNA ligase K01883 CARS; cysteinyl-tRNA synthetase [EC:6.1.1.16]
D AQ619_08700 glutamate--tRNA ligase K01885 EARS; glutamyl-tRNA synthetase [EC:6.1.1.17]
D AQ619_01470 arginine--tRNA ligase K01887 RARS; arginyl-tRNA synthetase [EC:6.1.1.19]
D AQ619_12360 phenylalanine--tRNA ligase subunit beta K01889 FARSA; phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
D AQ619_12370 phenylalanine--tRNA ligase subunit beta K01890 FARSB; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]
D AQ619_00955 histidine--tRNA ligase K01892 HARS; histidyl-tRNA synthetase [EC:6.1.1.21]
D AQ619_10740 glutamyl-Q tRNA(Asp) synthetase K01894 gluQ; glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
C Trans-editing factors
D AQ619_05190 cys-tRNA(pro)/cys-tRNA(cys) deacylase K03976 ybaK; Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase [EC:3.1.1.-]
D AQ619_16510 DNA-binding protein K19055 prdX; Ala-tRNA(Pro) deacylase [EC:3.1.1.-]
B tRNA modification factors
C Deaminases
D AQ619_01100 CMP deaminase K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]
C Dihydorouridine synthases
D AQ619_09520 tRNA-dihydrouridine synthase A K05539 dusA; tRNA-dihydrouridine synthase A [EC:1.-.-.-]
D AQ619_08850 tRNA-dihydrouridine synthase K05540 dusB; tRNA-dihydrouridine synthase B [EC:1.-.-.-]
C Methylthiotransferases
D AQ619_00110 (dimethylallyl)adenosine tRNA methylthiotransferase K06168 miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
D AQ619_17625 2-methylthioadenine synthase K18707 mtaB; threonylcarbamoyladenosine tRNA methylthiotransferase MtaB [EC:2.8.4.5]
C Methyltransferases
D AQ619_05225 rRNA methyltransferase K02533 lasT; tRNA/rRNA methyltransferase [EC:2.1.1.-]
D AQ619_04540 tRNA (uracil-5-)-methyltransferase K04094 trmFO; methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase [EC:2.1.1.74]
D AQ619_00145 tRNA (guanine-N7)-methyltransferase K03439 trmB; tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
D AQ619_00710 tRNA (guanine-N1)-methyltransferase K00554 trmD; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
D AQ619_17820 tRNA modification GTPase MnmE K03650 mnmE; tRNA modification GTPase [EC:3.6.-.-]
D AQ619_01745 rRNA methyltransferase K03216 trmL; tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
D AQ619_06605 RNA methyltransferase K03437 spoU; RNA methyltransferase, TrmH family
C Psudouridine synthases
D AQ619_15940 pseudouridine synthase K06173 truA; tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
D AQ619_00200 pseudouridine synthase K03177 truB; tRNA pseudouridine55 synthase [EC:5.4.99.25]
C Thiolation factors
D AQ619_13765 tRNA-specific 2-thiouridylase K00566 mnmA; tRNA-uridine 2-sulfurtransferase [EC:2.8.1.13]
D AQ619_09050 FeS assembly scaffold SufA K13628 iscA; iron-sulfur cluster assembly protein
D AQ619_09090 aminotransferase K04487 iscS; cysteine desulfurase [EC:2.8.1.7]
D AQ619_01610 glycine cleavage system protein T K06980 ygfZ; tRNA-modifying protein YgfZ
C KEOPS/EKC complex
C Other tRNA modification factors
D AQ619_17825 tRNA uridine 5-carboxymethylaminomethyl modification protein K03495 gidA; tRNA uridine 5-carboxymethylaminomethyl modification enzyme
D AQ619_11805 tRNA dimethylallyltransferase K00791 miaA; tRNA dimethylallyltransferase [EC:2.5.1.75]
D AQ619_03010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase K15461 mnmC; tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
D AQ619_07815 S-adenosylmethionine:tRNA ribosyltransferase-isomerase K07568 queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:2.4.99.17]
D AQ619_14595 7-cyano-7-deazaguanine synthase K06920 queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]
D AQ619_14585 6-pyruvoyl tetrahydrobiopterin synthase K01737 queD; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]
D AQ619_14590 7-carboxy-7-deazaguanine synthase K10026 queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]
D AQ619_04225 7-cyano-7-deazaguanine reductase K09457 queF; 7-cyano-7-deazaguanine reductase [EC:1.7.1.13]
D AQ619_17275 epoxyqueuosine reductase K18979 queG; epoxyqueuosine reductase [EC:1.17.99.6]
D AQ619_14850 selenide, water dikinase K01008 selD; selenide, water dikinase [EC:2.7.9.3]
D AQ619_14845 tRNA 2-selenouridine synthase K06917 selU; tRNA 2-selenouridine synthase [EC:2.9.1.3]
D AQ619_07820 queuine tRNA-ribosyltransferase K00773 tgt; queuine tRNA-ribosyltransferase [EC:2.4.2.29]
D AQ619_15010 tRNA(Ile)-lysidine synthetase K04075 tilS; tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
D AQ619_00095 tRNA threonylcarbamoyladenosine biosynthesis protein TsaB K14742 tsaB; tRNA threonylcarbamoyladenosine biosynthesis protein TsaB
D AQ619_01340 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87]
D AQ619_16965 tRNA threonylcarbamoyl adenosine modification protein TsaD K25706 tsaD; tRNA N6-adenosine threonylcarbamoyltransferase [EC:2.3.1.234]
D AQ619_00575 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE K06925 tsaE; tRNA threonylcarbamoyladenosine biosynthesis protein TsaE
B tRNA degradation factors
C AQ619_10330 ribonuclease R K12573 rnr; ribonuclease R [EC:3.1.13.1]
C AQ619_00210 polyribonucleotide nucleotidyltransferase K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
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#[ BRITE | KEGG2 | KEGG ]
#Last updated: February 29, 2024