+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Chromobacterium phragmitis IIBBL 274-1

% ! AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D DK843_00585 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D DK843_02085 oligoribonuclease K13288 orn; oligoribonuclease [EC:3.1.-.-] D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins C Other pre-60S particles B Other ribosome biogenesis factors C DK843_00590 GTPase Era K03595 era; GTPase C DK843_10655 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C DK843_14365 dksA; RNA polymerase-binding protein DksA K06204 dksA; RNA polymerase-binding transcription factor C DK843_09375 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor C DK843_20455 nusA; transcription termination/antitermination protein NusA K02600 nusA; transcription termination/antitermination protein NusA C DK843_02205 transcription antitermination factor NusB K03625 nusB; transcription antitermination protein NusB C DK843_15960 transcription termination/antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D DK843_12945 16S rRNA pseudouridine(516) synthase K06183 rsuA; 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] D DK843_14120 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D DK843_08670 SAM-dependent methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D DK843_15570 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D DK843_15920 rsmD; 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D DK843_13060 16S rRNA (uracil(1498)-N(3))-methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D DK843_11530 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D DK843_15140 16S rRNA (cytosine(1402)-N(4))-methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D DK843_07535 SAM-dependent methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D DK843_11580 rsmI; 16S rRNA (cytidine(1402)-2'-O)-methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D DK843_12565 16S rRNA methyltransferase K15984 rsmJ; 16S rRNA (guanine1516-N2)-methyltransferase [EC:2.1.1.242] D DK843_15405 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D DK843_18750 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D DK843_09615 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D DK843_12280 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D DK843_13080 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D DK843_01960 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ K07115 rlmJ; 23S rRNA (adenine2030-N6)-methyltransferase [EC:2.1.1.266] D DK843_18510 SAM-dependent methyltransferase K25136 rlmK; 23S rRNA (guanine2069-N7)-methyltransferase [EC:2.1.1.264] D DK843_09075 RNA methyltransferase K25137 rlmL; 23S rRNA (guanine2445-N2)-methyltransferase [EC:2.1.1.173] D DK843_01350 RNA methyltransferase K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D DK843_08185 rlmN; 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D DK843_15405 TlyA family rRNA (cytidine-2'-O)-methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D DK843_22320 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D DK843_18805 TIGR01621 family pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D DK843_09310 RNA pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D DK843_07325 23S rRNA pseudouridylate synthase B K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D DK843_21780 RNA pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D DK843_00950 23S rRNA pseudouridine(1911/1915/1917) synthase RluD K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] D DK843_08875 pseudouridine synthase K06181 rluE; 23S rRNA pseudouridine2457 synthase [EC:5.4.99.20] D DK843_16230 pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] D DK843_02270 pseudouridylate synthase K06182 rluF; 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21] B ribosomal protein modification factors C DK843_10360 GNAT family N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C DK843_07690 rimI; ribosomal-protein-alanine N-acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C DK843_14325 alanine acetyltransferase K03790 rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267] C DK843_19545 RimJ/RimL family protein N-acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C DK843_19550 RimJ/RimL family protein N-acetyltransferase K03817 rimL; ribosomal-protein-serine acetyltransferase [EC:2.3.1.-] C DK843_08930 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C DK843_19990 30S ribosomal protein S12 methylthiotransferase RimO K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C DK843_17875 50S ribosomal protein L11 methyltransferase K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] C DK843_00835 50S ribosomal protein L3 N(5)-glutamine methyltransferase K07320 prmB; ribosomal protein L3 glutamine methyltransferase [EC:2.1.1.298] C DK843_08470 cupin K18850 ycfD; 50S ribosomal protein L16 3-hydroxylase [EC:1.14.11.47] B rRNA processing factors C DK843_00585 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C DK843_21790 ribonuclease E/G K08300 rne; ribonuclease E [EC:3.1.26.12] C DK843_14135 ribonuclease G K08301 rng; ribonuclease G [EC:3.1.26.-] C DK843_10070 Holliday junction resolvase RuvX K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C DK843_04045 ATP-dependent RNA helicase DbpA K05591 dbpA; ATP-dependent RNA helicase DbpA [EC:5.6.2.6] B GTPases C DK843_00590 GTPase Era K03595 era; GTPase C DK843_02070 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C DK843_00645 rsgA; ribosome small subunit-dependent GTPase A K06949 rsgA; ribosome biogenesis GTPase / thiamine phosphate phosphatase [EC:3.6.1.- 3.1.3.100] C DK843_08150 der; ribosome biogenesis GTPase Der K03977 engA; GTPase C DK843_10655 obgE; GTPase ObgE K03979 obgE; GTPase [EC:3.6.5.-] C DK843_10080 ribosome biogenesis GTPase YlqF K14540 rbgA; ribosome biogenesis GTPase A C DK843_08140 GTPase HflX K03665 hflX; GTPase B Other maturation factors C DK843_12030 tRNA threonylcarbamoyladenosine biosynthesis protein RimN K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C DK843_09465 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C DK843_20465 30S ribosome-binding factor RbfA K02834 rbfA; ribosome-binding factor A C DK843_20450 ribosome maturation factor RimP K09748 rimP; ribosome maturation factor RimP C DK843_21240 RNA-binding protein K14761 rlbA; ribosome-associated protein C DK843_12275 rsfS; ribosome silencing factor K09710 ybeB; ribosome-associated protein C DK843_16195 rRNA maturation RNase YbeY K07042 ybeY; probable rRNA maturation factor C DK843_09620 ribosome assembly RNA-binding protein YhbY K07574 yhbY; RNA-binding protein C DK843_06250 ribosome-associated protein K09889 yjgA; ribosome-associated protein C DK843_07075 raiA; ribosome-associated translation inhibitor RaiA K05808 hpf; ribosome hibernation promoting factor C DK843_16740 redox-regulated ATPase YchF K06942 ychF; ribosome-binding ATPase C DK843_07525 metal-binding protein K07040 yceD; DUF177 domain-containing protein # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: April 22, 2024