+E Ribosome biogenesis KO #

  Ribosome Biogenesis - Citromicrobium sp. JL477

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AEukaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B 90S particles C U3 small nucleolar RNA-associated proteins C Helicases C GTPase C RNase D WG74_11575 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C Kinase C Other 90S particles B Pre-40S particles C Kinases C Export and cytoplasmic maturation factors C Other pre-40S particles B Pre-60S particles C Helicases C GTPases C RNases D RNase MRP C Kinases C Export and cytoplasmic maturation factors C 5-FMC complex C Ribosome quality control proteins D WG74_01255 ATPase AAA K13525 VCP; transitional endoplasmic reticulum ATPase C Other pre-60S particles B Other ribosome biogenesis factors C WG74_11580 GTPase Era K03595 era; GTPase C WG74_07685 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] # AProkaryotic type B Sno RNPs C Box C/D snoRNPs C Box H/ACA snoRNPs B rRNA transcription factors C WG74_02020 molecular chaperone DnaK K06204 dksA; RNA polymerase-binding transcription factor C WG74_12565 hypothetical protein K06204 dksA; RNA polymerase-binding transcription factor C WG74_13150 transcription elongation factor NusA K02600 nusA; transcription termination/antitermination protein NusA C WG74_08400 antitermination protein NusB K03625 nusB; transcription antitermination protein NusB C WG74_15580 antitermination protein NusG K02601 nusG; transcription termination/antitermination protein NusG B rRNA modification factors C 16S rRNA modification factors D WG74_15280 16S rRNA methyltransferase K02528 ksgA; 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] D WG74_05260 SAM-dependent methlyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D WG74_11295 RNA methyltransferase K03500 rsmB; 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] D WG74_13740 methyltransferase K08316 rsmD; 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] D WG74_08970 16S rRNA methyltransferase K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] D WG74_02725 16S rRNA methyltransferase K03501 gidB; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] D WG74_07580 16S rRNA methyltransferase K03438 mraW; 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] D WG74_09665 16S rRNA methyltransferase K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] D WG74_14400 RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] C 23S rRNA modification factors D WG74_12660 pseudouridine synthase K03218 rlmB; 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] D WG74_03875 ribosomal RNA large subunit methyltransferase E K02427 rlmE; 23S rRNA (uridine2552-2'-O)-methyltransferase [EC:2.1.1.166] D WG74_02920 50S rRNA methyltransferase K00783 rlmH; 23S rRNA (pseudouridine1915-N3)-methyltransferase [EC:2.1.1.177] D WG74_08845 SAM-dependent methyltransferase K06969 rlmI; 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] D WG74_13890 RNA methyltransferase RlmN K06941 rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] D WG74_14400 RNA methyltransferase K06442 tlyA; 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] D WG74_11125 RNA methyltransferase K03215 rumA; 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] D WG74_00565 pseudouridine synthase K06177 rluA; tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] D WG74_13735 pseudouridine synthase K06178 rluB; 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] D WG74_07205 pseudouridine synthase K06179 rluC; 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] D WG74_07090 pseudouridine synthase K06180 rluD; 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] B ribosomal protein modification factors C WG74_14700 acetyltransferase K03789 rimI; [ribosomal protein S18]-alanine N-acetyltransferase [EC:2.3.1.266] C WG74_13420 ribosomal protein S6 modification protein K05844 rimK; ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-] C WG74_13530 ribosome maturation factor RimM K02860 rimM; 16S rRNA processing protein RimM C WG74_06870 ribosomal protein S12 methylthiotransferase K14441 rimO; ribosomal protein S12 methylthiotransferase [EC:2.8.4.4] C WG74_13230 ribonucleotide-diphosphate reductase subunit beta K02687 prmA; ribosomal protein L11 methyltransferase [EC:2.1.1.-] B rRNA processing factors C WG74_11575 ribonuclease III K03685 rnc; ribonuclease III [EC:3.1.26.3] C WG74_11010 ribonuclease K08300 rne; ribonuclease E [EC:3.1.26.12] C WG74_08760 Holliday junction resolvase K07447 ruvX; putative pre-16S rRNA nuclease [EC:3.1.-.-] B rRNA helicases C WG74_11880 DEAD/DEAH box helicase K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] B GTPases C WG74_11580 GTPase Era K03595 era; GTPase C WG74_07000 GTP-binding protein Der K03977 engA; GTPase C WG74_07685 obgE; GTPase CgtA K03979 obgE; GTPase [EC:3.6.5.-] C WG74_09420 GTPase HflX K03665 hflX; GTPase B Other maturation factors C WG74_02760 translation factor Sua5 K07566 tsaC; L-threonylcarbamoyladenylate synthase [EC:2.7.7.87] C WG74_04665 GTP pyrophosphokinase K01139 spoT; GTP diphosphokinase / guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [EC:2.7.6.5 3.1.7.2] C WG74_13130 ribosome-binding factor A K02834 rbfA; ribosome-binding factor A C WG74_13155 ribosome maturation protein RimP K09748 rimP; ribosome maturation factor RimP C WG74_02915 ribosome-associated protein IOJAP K09710 ybeB; ribosome-associated protein C WG74_14795 rRNA maturation factor K07042 ybeY; probable rRNA maturation factor C WG74_09870 GTP-binding protein K06942 ychF; ribosome-binding ATPase # ARelated small nucleolar RNAs B Box C/D snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for 2'-O-ribose methylation B Box H/ACA snoRNAs C SnoRNAs involved in processing reactions C SnoRNAs act as guides for pseudouridynation B Other snoRNA ! #
#[ BRITE | KEGG2 | KEGG ]
#Last updated: July 8, 2025